Metagenome / Metatranscriptome Family F100925

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F100925
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	76 residues
Representative Sequence	MSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.65 %
% of genes near scaffold ends (potentially truncated)	34.31 %
% of genes from short scaffolds (< 2000 bps)	97.06 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (27.451 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.863 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.03% β-sheet: 12.33% Coil/Unstructured: 61.64%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF06803	DUF1232	28.43
PF10531	SLBB	3.92
PF12836	HHH_3	1.96
PF13649	Methyltransf_25	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3339	Uncharacterized membrane protein YkvA, DUF1232 family	Function unknown [S]	28.43

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	98.04 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	97.06 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	95.10 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	93.14 %
Chloroflexi bacterium RBG_16_72_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	1.96 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004081\|Ga0063454_101168227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	634	Open in IMG/M
3300004114\|Ga0062593_101506213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	725	Open in IMG/M
3300004479\|Ga0062595_102392822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300004480\|Ga0062592_102652104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	506	Open in IMG/M
3300004643\|Ga0062591_100491426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1050	Open in IMG/M
3300005093\|Ga0062594_101714025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	657	Open in IMG/M
3300005455\|Ga0070663_100870978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	776	Open in IMG/M
3300005459\|Ga0068867_100917700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	789	Open in IMG/M
3300005547\|Ga0070693_100645602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	769	Open in IMG/M
3300005564\|Ga0070664_102019669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	547	Open in IMG/M
3300005564\|Ga0070664_102044804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	544	Open in IMG/M
3300005615\|Ga0070702_101106860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	633	Open in IMG/M
3300005616\|Ga0068852_100750121	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300006755\|Ga0079222_10167936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1273	Open in IMG/M
3300006755\|Ga0079222_10636894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	825	Open in IMG/M
3300009148\|Ga0105243_10510310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1141	Open in IMG/M
3300009553\|Ga0105249_11256903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	812	Open in IMG/M
3300009789\|Ga0126307_10149371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1869	Open in IMG/M
3300009789\|Ga0126307_10308707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1272	Open in IMG/M
3300009840\|Ga0126313_11258203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	611	Open in IMG/M
3300010036\|Ga0126305_10400701	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	904	Open in IMG/M
3300010037\|Ga0126304_10551614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	775	Open in IMG/M
3300010041\|Ga0126312_10966329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	622	Open in IMG/M
3300010147\|Ga0126319_1633837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	746	Open in IMG/M
3300010147\|Ga0126319_1649185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	616	Open in IMG/M
3300010154\|Ga0127503_11079615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	549	Open in IMG/M
3300010166\|Ga0126306_10449107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1014	Open in IMG/M
3300011332\|Ga0126317_10593465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	617	Open in IMG/M
3300011332\|Ga0126317_10998894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300012212\|Ga0150985_100062080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	558	Open in IMG/M
3300012212\|Ga0150985_113256111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	749	Open in IMG/M
3300012469\|Ga0150984_107433834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	517	Open in IMG/M
3300012469\|Ga0150984_113316494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	783	Open in IMG/M
3300012891\|Ga0157305_10292964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	507	Open in IMG/M
3300012895\|Ga0157309_10263510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	567	Open in IMG/M
3300012896\|Ga0157303_10097385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	706	Open in IMG/M
3300012898\|Ga0157293_10082066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	793	Open in IMG/M
3300012898\|Ga0157293_10288232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	537	Open in IMG/M
3300012900\|Ga0157292_10187907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	683	Open in IMG/M
3300012903\|Ga0157289_10354502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	537	Open in IMG/M
3300012907\|Ga0157283_10382162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	517	Open in IMG/M
3300012911\|Ga0157301_10356091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300012912\|Ga0157306_10098087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	844	Open in IMG/M
3300012913\|Ga0157298_10172479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300012915\|Ga0157302_10043361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	1243	Open in IMG/M
3300012937\|Ga0162653_100068271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300012943\|Ga0164241_10127383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1826	Open in IMG/M
3300012955\|Ga0164298_10241696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1083	Open in IMG/M
3300012957\|Ga0164303_11382454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	525	Open in IMG/M
3300012985\|Ga0164308_10208102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_72_14	1496	Open in IMG/M
3300012985\|Ga0164308_10562764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	964	Open in IMG/M
3300012987\|Ga0164307_10070503	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2086	Open in IMG/M
3300012988\|Ga0164306_10434235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	995	Open in IMG/M
3300013306\|Ga0163162_11826510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	695	Open in IMG/M
3300014969\|Ga0157376_12057999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	609	Open in IMG/M
3300015077\|Ga0173483_10257684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	834	Open in IMG/M
3300015201\|Ga0173478_10698303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300015372\|Ga0132256_102475448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	621	Open in IMG/M
3300017965\|Ga0190266_10003675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3268	Open in IMG/M
3300018432\|Ga0190275_11099532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	868	Open in IMG/M
3300018476\|Ga0190274_10027178	All Organisms → cellular organisms → Bacteria	3853	Open in IMG/M
3300018476\|Ga0190274_11570230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	750	Open in IMG/M
3300019362\|Ga0173479_10113706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1026	Open in IMG/M
3300022906\|Ga0247766_1042846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1135	Open in IMG/M
3300022911\|Ga0247783_1261787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	503	Open in IMG/M
3300023272\|Ga0247760_1070296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	889	Open in IMG/M
3300023275\|Ga0247776_10213091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	727	Open in IMG/M
3300025925\|Ga0207650_11920856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M
3300025935\|Ga0207709_10753150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	783	Open in IMG/M
3300025945\|Ga0207679_12171669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	504	Open in IMG/M
3300025981\|Ga0207640_10852649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	793	Open in IMG/M
3300026089\|Ga0207648_11205488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	711	Open in IMG/M
3300026118\|Ga0207675_102636764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	512	Open in IMG/M
3300027787\|Ga0209074_10058100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1204	Open in IMG/M
3300028587\|Ga0247828_10735405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	618	Open in IMG/M
3300028589\|Ga0247818_11161358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	550	Open in IMG/M
3300028592\|Ga0247822_10285126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1258	Open in IMG/M
3300028597\|Ga0247820_10920052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	621	Open in IMG/M
3300028704\|Ga0307321_1101726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	584	Open in IMG/M
3300028754\|Ga0307297_10174230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	743	Open in IMG/M
3300028790\|Ga0307283_10045365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1031	Open in IMG/M
3300028803\|Ga0307281_10263792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	635	Open in IMG/M
3300028812\|Ga0247825_10467540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	895	Open in IMG/M
3300028876\|Ga0307286_10286552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	607	Open in IMG/M
3300028889\|Ga0247827_10935312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	584	Open in IMG/M
3300030336\|Ga0247826_10346158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1081	Open in IMG/M
3300030336\|Ga0247826_10538022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	888	Open in IMG/M
3300030336\|Ga0247826_10673041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	800	Open in IMG/M
3300030902\|Ga0308202_1130330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	545	Open in IMG/M
3300031092\|Ga0308204_10157260	All Organisms → cellular organisms → Bacteria → Terrabacteria group	679	Open in IMG/M
3300031854\|Ga0310904_10258377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1083	Open in IMG/M
3300031938\|Ga0308175_101796673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	687	Open in IMG/M
3300031938\|Ga0308175_102325996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	601	Open in IMG/M
3300031939\|Ga0308174_11098161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	677	Open in IMG/M
3300031940\|Ga0310901_10140049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	917	Open in IMG/M
3300031944\|Ga0310884_10406797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	783	Open in IMG/M
3300032000\|Ga0310903_10704475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	546	Open in IMG/M
3300032012\|Ga0310902_11340419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	508	Open in IMG/M
3300032074\|Ga0308173_10703260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	924	Open in IMG/M
3300032080\|Ga0326721_11045773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300032126\|Ga0307415_101689442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	610	Open in IMG/M
3300033551\|Ga0247830_10666765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	825	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.41%
Host-Associated	Host-Associated	20.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.51%
Plants	Host-Associated → Plants	20.59%
Aquatic	Environmental → Aquatic	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.84%
Freshwater	Environmental → Aquatic → Freshwater	4.90%
Plant Litter	Environmental → Terrestrial → Plant Litter	3.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	3.92%
Loam	Environmental → Terrestrial → Soil → Loam	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.20%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	18.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	18.63%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.86%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.90%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022906	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L223-509R-6	Environmental	Open in IMG/M
3300022911	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L064-202C-5	Environmental	Open in IMG/M
3300023272	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L171-409R-4	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063454_1011682272	3300004081	Soil	MPTRPVLILNPRDDVEFTGFAEAEVGAGASTAADLQLRLRERYPLANVRPRDLSSEQTSVWYVYREGHWVPSGG*
Ga0062593_1015062132	3300004114	Soil	MSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0062595_1023928221	3300004479	Soil	MSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPVAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0062592_1026521042	3300004480	Soil	GDARHGRLGPMSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRRLRERFPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0062591_1004914262	3300004643	Soil	MSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0062594_1017140252	3300005093	Soil	MSQRPVLILNPRDDTGFTAYAEQLVDSGALDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG*
Ga0070663_1008709782	3300005455	Corn Rhizosphere	MSQQPVLILNPRDDTGFTAYAEELVEIGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGHWVPSTRIEES*
Ga0068867_1009177002	3300005459	Miscanthus Rhizosphere	MSQRPVLILNPRDDNGFTAYAEELLDNGAPDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG*
Ga0070693_1006456022	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSTRPILILNPRDDTAFTGYADDLATADDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0070664_1020196692	3300005564	Corn Rhizosphere	NPRDDTAFTGYAEDLATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0070664_1020448041	3300005564	Corn Rhizosphere	MSQRPVLILNPRDDTGFTVYAEELVENGALDAQELQGKLRERYPLAIVRPRDLSSERTAVWYVYREGHWVPSTRIEES*
Ga0070702_1011068601	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LILNPRDDTGFTVYAEELVETVALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGHWVPSTRIEES*
Ga0068852_1007501211	3300005616	Corn Rhizosphere	NPRDDTAFTGYADDLATADDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0079222_101679362	3300006755	Agricultural Soil	MTTRPVLILNPRDDAEFAGYAEELAGEGGLDAQELQGKLRGRYPKAVVRPRDLSSERTAIWYVYREGSWVPSARIEEG*
Ga0079222_106368942	3300006755	Agricultural Soil	MTTRPVLILNPRDDTDFAGFAEELADTGGLDAEGLQGRLRGRYPKAVVRPRDLSSERTAVWYVYREGYWVPSTRAEET*
Ga0105243_105103103	3300009148	Miscanthus Rhizosphere	MSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRQLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0105249_112569032	3300009553	Switchgrass Rhizosphere	MSTRSILILNPRDDTAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0126307_101493713	3300009789	Serpentine Soil	MPTRPLLILNPRDDTGFATFAETLVAEGAAAATSLEAQLRERYPRAAVRPRELSSERTVVWYVYRDGHWVPHRTTKEESA*
Ga0126307_103087072	3300009789	Serpentine Soil	MPTRPVLILNPRDDTEFMVFAEDLVEEGAVDAPELQGKLRSRYSRAVVRPRDLSSERTAVWYVYREGYWVPSARSEEG*
Ga0126313_112582031	3300009840	Serpentine Soil	MLPWNRWMPTRPVLILNPRDDAEFVVFAEDLVEHGTIDARELQGKLRTRYSKAVVRPRDLSSERTAVWYVYREGSWVPSTRREEG*
Ga0126305_104007013	3300010036	Serpentine Soil	MSQRPVLILNPRDDTGFTAYAEELVVNGALDAQELQGKLRDRYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG*
Ga0126304_105516142	3300010037	Serpentine Soil	MPTRPLLILNPRDDTGFATFAETLVAEGAAAATSLEAQLRERYPRAAVRPRELSSERTVVWYVYRDWHWVPHRTTKEESA*
Ga0126312_109663291	3300010041	Serpentine Soil	MPTRPLLILNPRDDTGFATFAETLVAEGAAAATSLEAQLRERYPRAAVRPRELSSERTVVWYVYRDGHWVPHRTTKEE*
Ga0126319_16338371	3300010147	Soil	LNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0126319_16491851	3300010147	Soil	MSTRPILILNPRDDTAFTGYAEDLATADDLTPDDLQRRLRERYPQAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0127503_110796152	3300010154	Soil	ILNPRDDTAFTGWAEELATASDLTPDDLQRLLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0126306_104491072	3300010166	Serpentine Soil	MSQRPVLILNPRDDTGFTAYAEELVVNGALEAQELQGKLRDRYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG*
Ga0126317_105934651	3300011332	Soil	ECGAREGPLHFMAIRPILILNPRDDPAFTGLAQELAAGGDLAPDDLQRRLREQYPLAAVRPRDLSSERTTVWYVYRDGRWVPRA*
Ga0126317_109988941	3300011332	Soil	MSQRPVLILNPRDDTGFTAYAEELVVNALDAPELQGKLRARYPLAVVRPRDLSSERTAVWYVYREGFWVPSIRTEEG*
Ga0150985_1000620801	3300012212	Avena Fatua Rhizosphere	ILILNPRDDPAFTGLAQELAGGGDLAPDDLQRRLREQYPLAAVRPRDLSSERTTVWYVYRDGRWVPRA*
Ga0150985_1132561111	3300012212	Avena Fatua Rhizosphere	FMAIRPILILNPRDDPAFTGLAQELAGGGDLAPDDLQRRLREQYPLAAVRPRDLSSERTTVWYVYRDGRWVPRA*
Ga0150984_1074338341	3300012469	Avena Fatua Rhizosphere	MTTRPVLILNPRDDPDFAAFAEELAVDGGLDAPGLQGRLRGRYPKAVVRPRDLSSERTAVWYVYREGMWVPSARTEGS*
Ga0150984_1133164943	3300012469	Avena Fatua Rhizosphere	GRLHFMATRPILILNPRDDSAFTGLAQQLAAGGDLAPDDLQRRLREQYPLAAVRPRDLSSERTTVWYVYRDGRWVPRA*
Ga0157305_102929641	3300012891	Soil	MSSRPILILNPRDDTAFTGFAEELATTTDLTPEALQRQLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0157309_102635101	3300012895	Soil	MSTRPILILNPRDDAAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0157303_100973852	3300012896	Soil	MSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRRLRERFPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0157293_100820661	3300012898	Soil	ILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0157293_102882322	3300012898	Soil	MSQRQVLILNPRDDNGFAAYAEELVDNGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG*
Ga0157292_101879073	3300012900	Soil	RWMSQQPVLILNPRDDNGFAAYAEELVDNGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG*
Ga0157289_103545021	3300012903	Soil	MSTRPILILNPRDDTAFTGYAEDLATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRAGPP
Ga0157283_103821622	3300012907	Soil	MSQRPVLILNPRDDTGFTVYAEELVENGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEES*
Ga0157301_103560912	3300012911	Soil	MSQQPVLILNPRDDNGFAAYAEELVDNGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG*
Ga0157306_100980872	3300012912	Soil	MSQRPVLILNPRDDTGFTAHAEELVDHGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG*
Ga0157298_101724792	3300012913	Soil	MSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRAGPPVEEEQR*
Ga0157302_100433613	3300012915	Soil	RHGRLETMSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0162653_1000682711	3300012937	Soil	LNPRDDTGFTAYAEELVVNGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG*
Ga0164241_101273833	3300012943	Soil	MSQRPVLILNPRDDTGFTAYAEALVVEGALDAPELQGKLRERYPLAVVRPRDLSSESTAVWYVYREGFWVPSTRIEEG*
Ga0164298_102416963	3300012955	Soil	MSNRPILILNPRDDTTFTGYAEELATAGDLTPDDLQRLLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0164303_113824542	3300012957	Soil	MSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRLLRERYPLAAVRPRDLSSERATVWYVYRDGHWVPRA*
Ga0164308_102081021	3300012985	Soil	GRLEAMSNRPILILNPRDDTTFTGYAEELASAGDLTPDDLQRLLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0164308_105627642	3300012985	Soil	MPTRPILILNPRDDTAFTGYADDLATADDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0164307_100705031	3300012987	Soil	MSNRPILILNPRDDTTFTGYAEELATAGDLTPDDLQRRLRERYPQAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0164306_104342351	3300012988	Soil	DTTFTGYAEELASAGDLTPDDLQRLLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0163162_118265101	3300013306	Switchgrass Rhizosphere	ILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0157376_120579991	3300014969	Miscanthus Rhizosphere	VAVNASATPIAVAWRLRARSPPATLATDDLEPMSTRPILILNPRDDAAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0173483_102576841	3300015077	Soil	RLETMSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0173478_106983031	3300015201	Soil	MSQRPVLILNPRDDTGFTVYAEELVENGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG*
Ga0132256_1024754481	3300015372	Arabidopsis Rhizosphere	MSTRPILILNPRDDTTFTGYAEKLATASDLTPDDLQRLLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA*
Ga0190266_100036754	3300017965	Soil	MSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRQLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0190275_110995322	3300018432	Soil	MFQRPVLILNPRDDTGFTAYAEELVVEGALDAPELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG
Ga0190274_100271782	3300018476	Soil	MSQQPVLILNPRDDNGFAAYAEELVDNGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0190274_115702302	3300018476	Soil	MSSRPILILNPRDDTAFTGFAEELVTTDELTPDALQRQLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0173479_101137062	3300019362	Soil	MSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0247766_10428462	3300022906	Plant Litter	MSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0247783_12617872	3300022911	Plant Litter	QLLDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0247760_10702961	3300023272	Plant Litter	TDDLEPMSTRPILILNPRDDAAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0247776_102130912	3300023275	Plant Litter	MLALDEIWMSQRPVLILNPRDDAGFTVYAEELVENGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0207650_119208562	3300025925	Switchgrass Rhizosphere	QPPGDARHGRLETMSTRPILILNPRDDTAFTGYAEELATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0207709_107531502	3300025935	Miscanthus Rhizosphere	MSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRRLRERFPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0207679_121716692	3300025945	Corn Rhizosphere	RRWMSQQPVLILNPRDDTGFTAYAEELVEIGALDAQELQGKLRERYPLAIVRPRDLSSERTAVWYVYREGHWVPSTRIEES
Ga0207640_108526492	3300025981	Corn Rhizosphere	MSQQPVLILNPRDDTGFTAYAEELVEIGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0207648_112054882	3300026089	Miscanthus Rhizosphere	MSQRPVLILNPRDDNGFTAYAEELVDNGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0207675_1026367642	3300026118	Switchgrass Rhizosphere	MSQRPVLILNPRDDTGFTVYAEELVETVALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0209074_100581002	3300027787	Agricultural Soil	MTTRPVLILNPRDDAEFAGYAEELAGEGGLDAQELQGKLRGRYPKAVVRPRDLSSERTAIWYVYREGSWVPSARIEEG
Ga0247828_107354052	3300028587	Soil	MSQRPVLILNPRDDTGFTAHAEELVDNGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVP
Ga0247818_111613581	3300028589	Soil	MSQRPVLILNPRDDTGFTAHAEELVDNGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPGTRIEEG
Ga0247822_102851261	3300028592	Soil	MSQRPVLILNPRDDTGFTAHAEELVDNGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0247820_109200522	3300028597	Soil	MSTRPILILNPRHDTAFTGYAEELATASDLTPDDLQRQLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0307321_11017261	3300028704	Soil	SPAPGDARPGRSWMSQRPVLILNPRDDTGFTAYAEELVINALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG
Ga0307297_101742302	3300028754	Soil	GPMSTRPILILNPRDDTAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0307283_100453652	3300028790	Soil	MSTRPILILNPRDDTAFTGYAEDLATASDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0307281_102637922	3300028803	Soil	MSTRPILILNPRDDTAFTRYAEELAAAGFLTPDALQRGLRERYPNAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0247825_104675402	3300028812	Soil	MSQRPVLILNPRDDNGFAAYAEELVDIGALDAQELQGKLRGRYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0307286_102865522	3300028876	Soil	MSTRPILILNPRDDAAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0247827_109353121	3300028889	Soil	MSQRPVLILNPRDDTGFTAHAEELVDHGVLDARELQGKLRERYPLAVVRPRDLSSERTAAWYVY
Ga0247826_103461582	3300030336	Soil	MSQRPVLILNPRDDTGFTVYAEELVENGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRILEG
Ga0247826_105380222	3300030336	Soil	MSSRPILILNPRDDTAFTGFAEELVTTTDLTPDALQRQLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0247826_106730412	3300030336	Soil	MSQRPVLILNPRDDTGFTAHAEELVDNGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGS
Ga0308202_11303302	3300030902	Soil	SPPATLATDDLEPMSTRPILILNPRDDAAFTGYAEELATANDLTPDDLQRRLRERYPLAAVRPRDLSSERTTVWYVYRDGHWVPRA
Ga0308204_101572601	3300031092	Soil	LNPRDDTAFIGYAEDLATVVDLTPDELQRRLRERYPLAAVRPRDLSSEQTTVWYVYRDGQWVPRA
Ga0310904_102583773	3300031854	Soil	MSQRPVLILNPRDDTGFTAHAEELVDHGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGAWVPSTRVEEG
Ga0308175_1017966732	3300031938	Soil	MSTRPVLILNPRDDATFTGYAEELATAVGLTPEALQHRLRERYPQAAVRPRDLSSERTTVWYVYRDGHWVPAHDPQ
Ga0308175_1023259962	3300031938	Soil	RFRCGGMSAQPVLILNPRDDMMFISLSESLVANENLTPVELQQRLRERYPMATVRPRDLSSERTTVWYVYRDGHWVPATKSEEG
Ga0308174_110981612	3300031939	Soil	MPTRPVLILNPRDDVEFTGFAEALLGAGASTAAELQGRLRERYPLANVRPRDLSSEQTAVWYVYREGHWVPSGG
Ga0310901_101400493	3300031940	Soil	MSQRPVLILNPRDDTGFTVYAEELVENGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0310884_104067972	3300031944	Soil	MSQRPVLILNPRDDTGFTAHAEELVDNGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGAWVPSTRVEEG
Ga0310903_107044751	3300032000	Soil	MSQRPVLILNPRDDTGFTAHAEELVDHGVLDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0310902_113404191	3300032012	Soil	PRRCSPWTNIWMSQRPVLILNPRDDTGFTVYAEELVENGALDARELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0308173_107032601	3300032074	Soil	MPTRPVLILNPRDDVEFTGFAEAEVGAGASTAADLQSRLRERYPLANVRPRDLSSEQTAVWYVYREGH
Ga0326721_110457731	3300032080	Soil	MSQRPVLILNPRDDTGFTAYAEELVVNALDAPELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG
Ga0307415_1016894421	3300032126	Rhizosphere	ALDELWMSQRPVLILNPRDDNAFSAHAEELVDNGALDAQELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGSWVPSTRIEEG
Ga0247830_106667652	3300033551	Soil	MSQRPVLILNPRDDTGFTAYAEELVVAGALDAPELQGKLRERYPLAVVRPRDLSSERTAVWYVYREGFWVPSTRIEEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100925

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences