Metagenome / Metatranscriptome Family F100913

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100913
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	57 residues
Representative Sequence	MKTGNVLRRVYGVTAALIGVLFFFIIVGVFGLRFAIAGLAVFVLGAVVVCRAFPTEGAEL
Number of Associated Samples	81
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.43 %
% of genes near scaffold ends (potentially truncated)	28.43 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.098 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (26.471 % of family members)
Environment Ontology (ENVO)	Unclassified (31.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.09% β-sheet: 0.00% Coil/Unstructured: 40.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01654	Cyt_bd_oxida_I	75.49
PF02322	Cyt_bd_oxida_II	4.90
PF00857	Isochorismatase	3.92
PF03633	Glyco_hydro_65C	1.96
PF09678	Caa3_CtaG	0.98
PF07235	DUF1427	0.98
PF01568	Molydop_binding	0.98
PF07969	Amidohydro_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	75.49
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	4.90
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	3.92
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.92
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	1.96
COG4317	Xanthosine utilization system component, XapX domain	Nucleotide transport and metabolism [F]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.10 %
Unclassified	root	N/A	4.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.10 %
Unclassified	root	N/A	4.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.10 %
Unclassified	root	N/A	4.90 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.76 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.84 %
Unclassified	root	N/A	4.90 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.90 %
Unclassified	root	N/A	4.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
Unclassified	root	N/A	4.90 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
Unclassified	root	N/A	4.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.94 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.98 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
Unclassified	root	N/A	4.90 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.94 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.90 %
Unclassified	root	N/A	4.90 %
Acidobacteriaceae bacterium KBS 83	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	1.96 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.98 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10018962	All Organisms → cellular organisms → Bacteria → Proteobacteria	2795	Open in IMG/M
3300001867\|JGI12627J18819_10065561	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300001867\|JGI12627J18819_10153094	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300002245\|JGIcombinedJ26739_101787235	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300002907\|JGI25613J43889_10041770	All Organisms → cellular organisms → Bacteria	1299	Open in IMG/M
3300005177\|Ga0066690_10006537	All Organisms → cellular organisms → Bacteria → Proteobacteria	5579	Open in IMG/M
3300005178\|Ga0066688_10293027	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300005295\|Ga0065707_10265906	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300005454\|Ga0066687_10355118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	840	Open in IMG/M
3300005559\|Ga0066700_10103296	All Organisms → cellular organisms → Bacteria → Proteobacteria	1871	Open in IMG/M
3300005591\|Ga0070761_11030625	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300006755\|Ga0079222_10698021	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300006800\|Ga0066660_10107925	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1986	Open in IMG/M
3300006800\|Ga0066660_11483512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300006844\|Ga0075428_102551252	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300006845\|Ga0075421_100765928	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300006845\|Ga0075421_100799775	All Organisms → cellular organisms → Bacteria → Proteobacteria	1086	Open in IMG/M
3300006845\|Ga0075421_101169735	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300006847\|Ga0075431_100942855	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300006852\|Ga0075433_10321501	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300006854\|Ga0075425_100365419	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300006854\|Ga0075425_101385832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	796	Open in IMG/M
3300006871\|Ga0075434_101147018	Not Available	790	Open in IMG/M
3300006871\|Ga0075434_101627710	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300006871\|Ga0075434_101836101	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300006903\|Ga0075426_10404169	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300007076\|Ga0075435_101648110	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300009038\|Ga0099829_10728687	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300009147\|Ga0114129_10718079	All Organisms → cellular organisms → Bacteria → Proteobacteria	1283	Open in IMG/M
3300009147\|Ga0114129_11917456	Not Available	718	Open in IMG/M
3300009156\|Ga0111538_11785068	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300009162\|Ga0075423_11217798	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300009176\|Ga0105242_12516571	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300010403\|Ga0134123_12676622	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300012189\|Ga0137388_10556704	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300012199\|Ga0137383_10496577	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300012202\|Ga0137363_10479554	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300012202\|Ga0137363_11002775	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300012203\|Ga0137399_10020732	All Organisms → cellular organisms → Bacteria	4297	Open in IMG/M
3300012205\|Ga0137362_10865951	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300012207\|Ga0137381_10314706	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300012210\|Ga0137378_11170038	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300012354\|Ga0137366_10488715	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300012361\|Ga0137360_10527310	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300012363\|Ga0137390_11260713	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300012683\|Ga0137398_10694927	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300012685\|Ga0137397_10022016	All Organisms → cellular organisms → Bacteria → Proteobacteria	4488	Open in IMG/M
3300012685\|Ga0137397_10551975	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300012924\|Ga0137413_11733452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300012925\|Ga0137419_11581318	Not Available	557	Open in IMG/M
3300012927\|Ga0137416_10139047	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300012927\|Ga0137416_11348400	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300012929\|Ga0137404_11288332	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300012929\|Ga0137404_12314907	Not Available	503	Open in IMG/M
3300012960\|Ga0164301_11516274	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300012989\|Ga0164305_11669318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	571	Open in IMG/M
3300015241\|Ga0137418_10083262	All Organisms → cellular organisms → Bacteria	2899	Open in IMG/M
3300015242\|Ga0137412_10112596	All Organisms → cellular organisms → Bacteria	2208	Open in IMG/M
3300015245\|Ga0137409_10038797	All Organisms → cellular organisms → Bacteria	4581	Open in IMG/M
3300015245\|Ga0137409_10880265	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300015264\|Ga0137403_10855643	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300015371\|Ga0132258_11076984	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300015371\|Ga0132258_11245917	All Organisms → cellular organisms → Bacteria	1880	Open in IMG/M
3300015371\|Ga0132258_12783224	All Organisms → cellular organisms → Bacteria	1219	Open in IMG/M
3300015373\|Ga0132257_103896360	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300018058\|Ga0187766_10351113	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300018468\|Ga0066662_10368066	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300019881\|Ga0193707_1032502	All Organisms → cellular organisms → Bacteria → Proteobacteria	1704	Open in IMG/M
3300019886\|Ga0193727_1148220	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300020579\|Ga0210407_10015917	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	5585	Open in IMG/M
3300020579\|Ga0210407_10072015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2596	Open in IMG/M
3300020579\|Ga0210407_10450973	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300020581\|Ga0210399_10322141	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300020581\|Ga0210399_11300163	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300021178\|Ga0210408_11179742	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300021402\|Ga0210385_10215978	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300021405\|Ga0210387_10499467	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300021411\|Ga0193709_1099896	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300021432\|Ga0210384_10609556	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300021478\|Ga0210402_10419599	All Organisms → cellular organisms → Bacteria → Proteobacteria	1243	Open in IMG/M
3300021479\|Ga0210410_11574730	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300022557\|Ga0212123_10148025	All Organisms → cellular organisms → Bacteria	1816	Open in IMG/M
3300026351\|Ga0257170_1019136	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300026469\|Ga0257169_1004930	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300026482\|Ga0257172_1034358	All Organisms → cellular organisms → Bacteria	919	Open in IMG/M
3300026499\|Ga0257181_1091779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300026507\|Ga0257165_1036370	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300027548\|Ga0209523_1041856	Not Available	932	Open in IMG/M
3300027576\|Ga0209003_1006590	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300027605\|Ga0209329_1037782	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300027842\|Ga0209580_10152052	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1139	Open in IMG/M
3300027873\|Ga0209814_10460208	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300027903\|Ga0209488_10166514	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300027909\|Ga0209382_10635091	All Organisms → cellular organisms → Bacteria → Proteobacteria	1158	Open in IMG/M
3300029636\|Ga0222749_10375755	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300031231\|Ga0170824_101167630	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300031469\|Ga0170819_14596073	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300031708\|Ga0310686_103126407	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83	13282	Open in IMG/M
3300031962\|Ga0307479_10942038	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300032180\|Ga0307471_100224983	All Organisms → cellular organisms → Bacteria	1904	Open in IMG/M
3300032180\|Ga0307471_101585268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300032180\|Ga0307471_101618720	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.47%
Host-Associated	Host-Associated	23.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.49%
Plants	Host-Associated → Plants	23.53%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.61%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	26.47%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	18.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027576	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_100189621	3300001867	Forest Soil	YGVTAALIGVLFFFIIVGVFGLPLAIAGLAVFILGAVVVWRVFPTEGARL*
JGI12627J18819_100655612	3300001867	Forest Soil	MKASNVSRRVFGLAAALVGVLLFFIIVGVFGLPLAIAGAVVVCRAFPTEEAEL*
JGI12627J18819_101530941	3300001867	Forest Soil	MKKSNLLRRVYGGIAALIGVLFFFIIVGVFGLPLAIAGLAVFVLGALVVCRVFPTEGAKL
JGIcombinedJ26739_1017872352	3300002245	Forest Soil	KSRELMKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLRFAIAGLAVFALGAVVVCRVFPTEGARL*
JGI25613J43889_100417702	3300002907	Grasslands Soil	MKTSNVLRRVFGVTAALIGVLFFFIIVGVFGLQLAIAGLAVFVLGAVVVFRVFPTEGARL
Ga0066690_100065371	3300005177	Soil	MKTSNVLRRVYAVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFPHERAEL
Ga0066688_102930272	3300005178	Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFPHERAEL
Ga0065707_102659061	3300005295	Switchgrass Rhizosphere	GAVTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPAERVEL*
Ga0066687_103551182	3300005454	Soil	MKTSNVLRRVFGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAF
Ga0066700_101032961	3300005559	Soil	GVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFPHERAEL*
Ga0070761_110306252	3300005591	Soil	MKTSNELHRVHAVTAALLGVLFFFIIVGVFGLRFAVAGLVVFVLGAVIVCRAFPTEGARL
Ga0079222_106980211	3300006755	Agricultural Soil	NVVTAALIGVLFFFIIVGVFGLSLAIAGLAVFVLGAVVVFRAFPAQRAEL*
Ga0066660_101079251	3300006800	Soil	MKTSNVLRRVFGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFP
Ga0066660_114835122	3300006800	Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFP
Ga0075428_1025512522	3300006844	Populus Rhizosphere	LGRLGGVAAALVGVLFFFIIVGVFGVRFALAGLVVFILGAVVVYRAFPAEGAEL*
Ga0075421_1007659282	3300006845	Populus Rhizosphere	MRSSKSLGRLGGVAAALVGVLFFFIIVGVFGVRFALAGLVVFILGAVVVYRAFPAEGAEL
Ga0075421_1007997752	3300006845	Populus Rhizosphere	MRNIKELRLLSGMTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVIYRAFPAEGA*
Ga0075421_1011697352	3300006845	Populus Rhizosphere	MRSGKRLRRLGAVTAALAGALFFFIIVGVFGVRFAIAGLVVFILGVVVVYRAFPAERVEL
Ga0075431_1009428551	3300006847	Populus Rhizosphere	MRSSKRLRRLGAVTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPAERVEL
Ga0075433_103215012	3300006852	Populus Rhizosphere	MRNSKKARRLGGVAAALAGVLFFFIIVGVFGVRFAISGLVIFILGAVFIYRAFPAEGAEL
Ga0075425_1003654191	3300006854	Populus Rhizosphere	MRNSKKARRLGGVAAALAGVLFFFIIVGVFGVRFAIAGLVIFILGAVFIYRAFPAEGAEL
Ga0075425_1013858322	3300006854	Populus Rhizosphere	LRRLGGVAASILGVLFFFIIVGVFGVRFAIAGLMVFILGAVVVYRAFPAEGAEL*
Ga0075434_1011470181	3300006871	Populus Rhizosphere	MTSSKRVRKLGGVTAALVGVLFFFIIVGVFGVRFAIAGLVVFILGSVVVYRAFPAEGAEL
Ga0075434_1016277102	3300006871	Populus Rhizosphere	MRSSKSSRRLGAVAAALTGVLFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPVEGVEP
Ga0075434_1018361012	3300006871	Populus Rhizosphere	MSGSKNLRRLGGVAASILGVLFFFIIVGVFGVRFAVAGLVVFILGAVVVYRAFPAESAEL
Ga0075426_104041691	3300006903	Populus Rhizosphere	AALAGVLFFFIIVGVFGVRFAISGLVIFILGAVFIYRAFPAEGAEL*
Ga0075435_1016481102	3300007076	Populus Rhizosphere	LPRLGAVTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPVEGAEP*
Ga0099829_107286871	3300009038	Vadose Zone Soil	MLRRVFGVTAALIGVLFFFIIVGVFGLRFAISGLAVFVLGAVVVFRAFPTEGAEL*
Ga0114129_107180792	3300009147	Populus Rhizosphere	MTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVIYRAFPAEGA*
Ga0114129_119174561	3300009147	Populus Rhizosphere	MRSGKRLPRLGAVTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVVYRA
Ga0111538_117850681	3300009156	Populus Rhizosphere	MRNSHRLSRIGGVAAALVGVLFFFIIVGVFGVRFATAGLLIFIFGAVVVYRAFPAEGAEL
Ga0075423_112177982	3300009162	Populus Rhizosphere	MRSSKSSRRLGAVAAALTGVLFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPVEGAEP
Ga0105242_125165711	3300009176	Miscanthus Rhizosphere	MRNSHRLSRIGGVAAALLGVLFFFIIVGVFGVRFAIAGLAVFILAAVVVYRAFPAEGAEL
Ga0134123_126766221	3300010403	Terrestrial Soil	MRRLGGVAAALAGVLFFFIIVGVFGLRFAIAGLVVFILGAVVVYRAFPAE
Ga0137388_105567042	3300012189	Vadose Zone Soil	MKTGNVLRRVYGVTAALIGVLFFFIIVGVFGLRFAIAGLAVFVLGAVVVCRAFPTEGAEL
Ga0137383_104965772	3300012199	Vadose Zone Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRVFPTEGARL
Ga0137363_104795544	3300012202	Vadose Zone Soil	MKTGNVLRRVYGVTAALIGVLFFFIIVGVFGLRFAIAGLTLFVLGAVVVCRTFPIERAEL
Ga0137363_110027751	3300012202	Vadose Zone Soil	MKTSKELRRVYGVTTALIGVLFFFIIVGVFGLRFAIAGLAVFVLGAVVVFRAFPSEGARA
Ga0137399_100207325	3300012203	Vadose Zone Soil	MRRLGGVAAALVGVLFFFIIVGVFGLRFAIAGLVVFILGAVVVYRAFPAEGAEL*
Ga0137362_108659512	3300012205	Vadose Zone Soil	MRRLGGVAAALVGVLFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPAEGAEP*
Ga0137381_103147062	3300012207	Vadose Zone Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAYPTERAEL
Ga0137378_111700382	3300012210	Vadose Zone Soil	MKTSNLLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFPHERAEL
Ga0137366_104887152	3300012354	Vadose Zone Soil	KELRLLCGMTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPAEGAEL*
Ga0137360_105273102	3300012361	Vadose Zone Soil	MKTSNVLRRVYGVTAAPIGVLFFFIIVGVFGLQFAIGGLSVFVLGAVVVCRAFPHERAEL
Ga0137390_112607132	3300012363	Vadose Zone Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFPTEGAEL
Ga0137398_106949272	3300012683	Vadose Zone Soil	MKTSKELRRVYGVTTALIGVLFFFIIVGVFGLRFAIAGLAVFVLGALVVCRAFPTEGGRV
Ga0137397_100220165	3300012685	Vadose Zone Soil	LRRLGGVAAALVGVLFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPAEGAEL*
Ga0137397_105519751	3300012685	Vadose Zone Soil	METGNVLRRVFGVTAALTGVLFFFIIVGAFGLPLAIAGLAVFVLGAVVVCRAFPTEGAEL
Ga0137413_117334522	3300012924	Vadose Zone Soil	MKTSNVLRRVFGVTAALIGVLFFFIIVGVFGLQLAIAGLAVFVLGAVVVCRAFPTERAEL
Ga0137419_115813181	3300012925	Vadose Zone Soil	MRRLGGVAAALVGVLFFFIIVGVFGLRFAIAGLVVFILGAVVVYRAFPAEG
Ga0137416_101390475	3300012927	Vadose Zone Soil	MKTSNVLRRVYGVTAALIGVLFFFITVGVFGLQFAIGGLAVFVLGAVVVCRAFPTERAEL
Ga0137416_113484002	3300012927	Vadose Zone Soil	MRRLGGVAAALVGVLFFFIIVGVFGVRFAIAGLVVFILAAVVVYRAFPAEGAEL*
Ga0137404_112883322	3300012929	Vadose Zone Soil	MKTGNVLRRVYGVTAALIGVLFFFIIVGVFGLRFAIAGLAVFVLGAVVVCRAFPAERAEL
Ga0137404_123149071	3300012929	Vadose Zone Soil	MKTSNVLPRVFGVTAALIGVLFFLIVVGVFGLPLAIAGLAVFVLGAVVACVAFPT
Ga0164301_115162742	3300012960	Soil	MKSGNVLPRVFGVTAALIGVLFFFIIVGVFGLPFAIAGLAVFVLGTVVVCRAFPTEGAEL
Ga0164305_116693182	3300012989	Soil	MRNSQRFRRLGGVAATLVGVLFFFIIVGVFGVRLAIAGLVVFILGAVVVYRAFPAEGAEL
Ga0137418_100832624	3300015241	Vadose Zone Soil	VFGVTVALIGVLFFFIIVGVFGLPFAIAGLAVFLLGAVVVCRVFPTEGARL*
Ga0137412_101125962	3300015242	Vadose Zone Soil	MKTSNVLRRVFGVTAALIGVLFFFIIVGVFGLRFAIAGLAVFVLGAVVVCRAFPTEGARV
Ga0137409_100387976	3300015245	Vadose Zone Soil	MMGSKRLRRLGGVAAALVGVLFFFIIVGVFGLRFAIAGLVVFILGAVVVYRAFPAEGAEL
Ga0137409_108802652	3300015245	Vadose Zone Soil	MKTSKELRRVYGVTTALIGVLFFFIIVGVFGLRFAIAGLAVFVLGAVVVCRAFPTEGARV
Ga0137403_108556432	3300015264	Vadose Zone Soil	MKTSNVLPRVFGVTAALIGVLFFLIVVGVFGLPLAIAGLAVFVLGAVVVCRVFPTEGSEL
Ga0132258_110769844	3300015371	Arabidopsis Rhizosphere	MRSSKRLRRLGGVAAALVGGLFFFVIVGVFGVRFAIAGLVVFILGAVVVYRAFPAEGVEL
Ga0132258_112459172	3300015371	Arabidopsis Rhizosphere	VAALVGVLFFFIIVGVFGLRFAIAGLVVFIIGAVVVYRMFPAEGAEL*
Ga0132258_127832242	3300015371	Arabidopsis Rhizosphere	MRSSKKWRRVGGVAAALAGMLFFFLIVGVFGVRFAIAGLVAFIIGVVVVCRMFPAEGAEL
Ga0132257_1038963602	3300015373	Arabidopsis Rhizosphere	MRSSKSSRRLGAVAAALTGVLFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPAEGAEL
Ga0187766_103511132	3300018058	Tropical Peatland	MKTNNMLRRVYGMAAAFVGVLFYFVIIGVFGLQSAIAGLAVFILGAVVVFRAFPTESAKS
Ga0066662_103680662	3300018468	Grasslands Soil	MKTSNVLRRVFGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFPHERAEL
Ga0193707_10325021	3300019881	Soil	LRRVFGVTAALLGVLFFFIVVGVFGLPLAIAGLAVFVLGAVVVCCVFPTERAEL
Ga0193727_11482202	3300019886	Soil	MKTGNVLRRVFGVTAALIGVLLFFIIVGVFGLPLAISGLAVFVVGAVVVCCVFPTEGARL
Ga0210407_100159173	3300020579	Soil	MKTSNVLRRVLGVTAALIGVLFFFMIVGVFGLSLAIAGLAVFVLGAVVVCRAFPTERAEL
Ga0210407_100720153	3300020579	Soil	KVGGKPMKISNGMRRVYGVTAALIGVLFFFIIVGVFGLSLAMAGLAVFVLGAVVVCRAFPTERAEL
Ga0210407_104509732	3300020579	Soil	MKTSNVLRRVYGVTAAIIGVLFFFFFIIVGVFGLPLAIAGAAVFVLGAVVVCRVFPTEGARL
Ga0210399_103221412	3300020581	Soil	VLGVTAALIGVLFFFMIVGVFGLSLAIAGLAVFVLGAVVVCRAFPTERAEL
Ga0210399_113001632	3300020581	Soil	MRSGKGLRRLGGVAATLAGVLFFFSIVGVFGLQLAIAGLAVFIVGAVVIYLAFPVEGADL
Ga0210408_111797422	3300021178	Soil	MKTSNVLRRVYGVTAALIGVVFFFIIVGVLGLPLAIAGLAVFALGAVVVCRAFPIQRAEP
Ga0210385_102159781	3300021402	Soil	MKTGNVLRRVYGVTAALIGVLFFFIIVGVFGLSLAITGLAVFVLGAVVVCRAFPTEGARL
Ga0210387_104994671	3300021405	Soil	MKISNGMRRVYGVTAALIGVLFFFIIVGVFGLSLAIAGLAVFVLGAVVVCRAFPTERAEL
Ga0193709_10998961	3300021411	Soil	MKTSNVLRRAYGVTAALVGVLFFFIIVGVFGLPLAIAGMAVFILGASVVCRVFPTEGARL
Ga0210384_106095562	3300021432	Soil	MKAGNVLRRVYGVTAALIGVLFFFIIVGVFGLSWAMAGLAVFVLGAVLVCRAFPTERAEL
Ga0210402_104195991	3300021478	Soil	RVYGAAAVLIGVLFFFIIVGVFGLPLAIAGLAVFVLAAVVVCRVFPTESARL
Ga0210410_115747302	3300021479	Soil	MKTSKELRRVYGVTAALIGVLFFFAIVGVFGLQFAIAGLAVFVAGAVVVCRAFPTEGARL
Ga0212123_101480254	3300022557	Iron-Sulfur Acid Spring	MKTGNVLRRVYGVTAALIAVLFFFIIVGVFGLPLAIAGLAVFVLGAVIVCSVFPVE
Ga0257170_10191361	3300026351	Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAIFVLGAVVVCRAFPTERAEL
Ga0257169_10049302	3300026469	Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLRFAIAGLAVFALGAVVVCRVFPTEGARL
Ga0257172_10343582	3300026482	Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAVFVLGAVVVCRAFPTERAEL
Ga0257181_10917791	3300026499	Soil	MKTSNMLRRVFGVTAALIGVLFFFIIVGVFGLRFAISGLAVFVLGAVVVCRAFPTEGAEL
Ga0257165_10363701	3300026507	Soil	KTSNVLRRVYGGTAALIGVLFFFIIVGVFGLQFAIGGLAIFVLGAVVVCRAFPTERAEL
Ga0209523_10418561	3300027548	Forest Soil	MKTSNLLRRVYVVTAALIGVLFFFIIVGVFGLSLAIAGLAVFVLGAVVVFRAFPAQRAEL
Ga0209003_10065902	3300027576	Forest Soil	MKTSNVLRRVYGVSAALLGVLFFFIIVGVFGFPLAIAGLAVFVLGAVVVFRAFPTKDARL
Ga0209329_10377822	3300027605	Forest Soil	MKTSNVLRRVFGVTAALIGVLFFFIIVGVFGLSLAIAGLAVFVLGAVVVCRAFPTERAEL
Ga0209580_101520521	3300027842	Surface Soil	VGELMKTSNVLSRVYGVTAALIGVLFFFIIVGVFGLSLAIVGLAVFTVGAVVVCR
Ga0209814_104602081	3300027873	Populus Rhizosphere	LGRLGGVAAALVGVLFFFIIVGVFGVRFALAGLVVFILGAVVVYRAFPAEGAEL
Ga0209488_101665143	3300027903	Vadose Zone Soil	MKTSNVLRRVYGVTAALIGVLFFFIIVGVFGLQFAIGGLAIFVLGTVVVCRAFPTERAEL
Ga0209382_106350912	3300027909	Populus Rhizosphere	MRNIKELRLLSGMTAALAGALFFFIIVGVFGVRFAIAGLVVFILGAVVIYRAFPAEGA
Ga0222749_103757552	3300029636	Soil	VTAALIGVLFFFIIVGVFGLSLAITGLAVFVLGAVVVCRAFPTEGASL
Ga0170824_1011676302	3300031231	Forest Soil	MLRRLGNAAAALAGGLFFFIIVGVFGVRFAIAGLVVFVLGAVVIYRAFPAEGAEL
Ga0170819_145960732	3300031469	Forest Soil	GGVAATLAGGLFFFIIAGVFGVRFAIAGLVVFVLGAVVIYRAFPAEGAEL
Ga0310686_1031264076	3300031708	Soil	MKTSNVLRRVYGGAAAFVGVLFFFVIVGVFGLSLAIGGLAVFVLGAVVVCRVFPAERAEL
Ga0307479_109420382	3300031962	Hardwood Forest Soil	LLGALFFFLILGVFGLQFAIGGLLVFVVGAVLISQAFPAEGAEP
Ga0307471_1002249832	3300032180	Hardwood Forest Soil	MKTSNVLRRVYDVTAALLGVLFFFIIVGVFGLRFAIAGLAVFVLGAVVVFRAFPTEGAEL
Ga0307471_1015852682	3300032180	Hardwood Forest Soil	MKTSNVLRRVLGVTAALIGVLFFFMIVGVFGLSLAIAGLAVFVLGAVVVCRAFPTERARL
Ga0307471_1016187202	3300032180	Hardwood Forest Soil	MRSSKRLRRLGGVAAALVGVLFFFIIVGVFGVRFAIAGLVVFILGAVVVYRAFPAEGAEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100913

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences