Metagenome / Metatranscriptome Family F100886

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100886
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	53 residues
Representative Sequence	PWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (77.451 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.451 % of family members)
Environment Ontology (ENVO)	Unclassified (26.471 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.216 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.50% β-sheet: 0.00% Coil/Unstructured: 57.50%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12900	Pyridox_ox_2	74.51
PF00871	Acetate_kinase	6.86
PF02518	HATPase_c	4.90
PF13500	AAA_26	1.96
PF02579	Nitro_FeMo-Co	1.96
PF01512	Complex1_51K	0.98
PF04107	GCS2	0.98
PF08281	Sigma70_r4_2	0.98
PF12724	Flavodoxin_5	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0282	Acetate kinase	Energy production and conversion [C]	6.86
COG3426	Butyrate kinase	Energy production and conversion [C]	6.86
COG1894	NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F)	Energy production and conversion [C]	0.98
COG4656	Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit	Energy production and conversion [C]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.45 %
Unclassified	root	N/A	22.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	77.45 %
Unclassified	root	N/A	22.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	77.45 %
Unclassified	root	N/A	22.55 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.25 %
Unclassified	root	N/A	22.55 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.27 %
Unclassified	root	N/A	22.55 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.55 %
Unclassified	root	N/A	22.55 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	12.75 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.55 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	14.71 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	12.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.92 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.55 %
unclassified Nitriliruptorales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales	12.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.92 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	2.94 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.55 %
Nitriliruptorales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	12.75 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	3.92 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.98 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10090746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	759	Open in IMG/M
3300004468\|Ga0068977_1028132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	843	Open in IMG/M
3300004476\|Ga0068966_1492926	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300004503\|Ga0068981_1133727	Not Available	636	Open in IMG/M
3300004618\|Ga0068963_1424217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1075	Open in IMG/M
3300005330\|Ga0070690_101245104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	595	Open in IMG/M
3300005334\|Ga0068869_101204717	Not Available	665	Open in IMG/M
3300005334\|Ga0068869_101329846	Not Available	634	Open in IMG/M
3300005434\|Ga0070709_10210000	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300005435\|Ga0070714_100361210	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300005436\|Ga0070713_101464197	Not Available	662	Open in IMG/M
3300005436\|Ga0070713_101845847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	586	Open in IMG/M
3300005437\|Ga0070710_10805069	Not Available	671	Open in IMG/M
3300005437\|Ga0070710_10875874	Not Available	646	Open in IMG/M
3300005445\|Ga0070708_100552021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1087	Open in IMG/M
3300005530\|Ga0070679_101553829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	609	Open in IMG/M
3300005537\|Ga0070730_10723094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	630	Open in IMG/M
3300005560\|Ga0066670_11028730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	504	Open in IMG/M
3300005618\|Ga0068864_101652487	Not Available	645	Open in IMG/M
3300005952\|Ga0080026_10088093	Not Available	853	Open in IMG/M
3300006755\|Ga0079222_12643123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	505	Open in IMG/M
3300006806\|Ga0079220_10914593	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300006954\|Ga0079219_10800037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	740	Open in IMG/M
3300009098\|Ga0105245_12322114	Not Available	590	Open in IMG/M
3300009520\|Ga0116214_1234933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	694	Open in IMG/M
3300009700\|Ga0116217_11027053	Not Available	504	Open in IMG/M
3300009824\|Ga0116219_10811857	Not Available	510	Open in IMG/M
3300010323\|Ga0134086_10374777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	567	Open in IMG/M
3300010362\|Ga0126377_11699937	Not Available	706	Open in IMG/M
3300010373\|Ga0134128_11633830	Not Available	709	Open in IMG/M
3300010376\|Ga0126381_100528670	All Organisms → cellular organisms → Bacteria	1668	Open in IMG/M
3300010379\|Ga0136449_101178342	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300010396\|Ga0134126_10275580	All Organisms → cellular organisms → Bacteria	1983	Open in IMG/M
3300010396\|Ga0134126_11118981	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300011078\|Ga0138565_1026747	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300011089\|Ga0138573_1287222	Not Available	834	Open in IMG/M
3300012285\|Ga0137370_10278025	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300012494\|Ga0157341_1037635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	549	Open in IMG/M
3300013297\|Ga0157378_12040382	Not Available	624	Open in IMG/M
3300013307\|Ga0157372_10345263	All Organisms → cellular organisms → Bacteria	1734	Open in IMG/M
3300017970\|Ga0187783_10736131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	712	Open in IMG/M
3300017972\|Ga0187781_10408172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	970	Open in IMG/M
3300018058\|Ga0187766_10268454	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300018060\|Ga0187765_10428922	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300018062\|Ga0187784_10093209	All Organisms → cellular organisms → Bacteria	2448	Open in IMG/M
3300020582\|Ga0210395_10456104	All Organisms → cellular organisms → Bacteria → Terrabacteria group	962	Open in IMG/M
3300021420\|Ga0210394_10117070	All Organisms → cellular organisms → Bacteria	2308	Open in IMG/M
3300021476\|Ga0187846_10319460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	641	Open in IMG/M
3300021478\|Ga0210402_10379967	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300024279\|Ga0247692_1069552	Not Available	551	Open in IMG/M
3300025906\|Ga0207699_10088283	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300025914\|Ga0207671_11062506	Not Available	637	Open in IMG/M
3300025915\|Ga0207693_10794203	Not Available	730	Open in IMG/M
3300025929\|Ga0207664_10372249	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300025981\|Ga0207640_11438794	Not Available	618	Open in IMG/M
3300026095\|Ga0207676_10295226	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300026294\|Ga0209839_10047817	All Organisms → cellular organisms → Bacteria	1559	Open in IMG/M
3300026317\|Ga0209154_1207981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300027696\|Ga0208696_1266561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	529	Open in IMG/M
3300027812\|Ga0209656_10030472	All Organisms → cellular organisms → Bacteria	3203	Open in IMG/M
3300031549\|Ga0318571_10007386	All Organisms → cellular organisms → Bacteria	2446	Open in IMG/M
3300031564\|Ga0318573_10081002	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300031564\|Ga0318573_10788609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	510	Open in IMG/M
3300031572\|Ga0318515_10102757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1500	Open in IMG/M
3300031572\|Ga0318515_10206985	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300031573\|Ga0310915_10395500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	981	Open in IMG/M
3300031682\|Ga0318560_10767540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	521	Open in IMG/M
3300031736\|Ga0318501_10669059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	572	Open in IMG/M
3300031747\|Ga0318502_10257061	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300031748\|Ga0318492_10481526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	657	Open in IMG/M
3300031751\|Ga0318494_10594933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	646	Open in IMG/M
3300031769\|Ga0318526_10201581	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300031778\|Ga0318498_10031766	All Organisms → cellular organisms → Bacteria	2294	Open in IMG/M
3300031778\|Ga0318498_10234138	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300031781\|Ga0318547_10045168	All Organisms → cellular organisms → Bacteria	2347	Open in IMG/M
3300031799\|Ga0318565_10105123	All Organisms → cellular organisms → Bacteria	1356	Open in IMG/M
3300031805\|Ga0318497_10473827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	701	Open in IMG/M
3300031821\|Ga0318567_10071455	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300031823\|Ga0307478_11800491	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	503	Open in IMG/M
3300031894\|Ga0318522_10345165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	564	Open in IMG/M
3300031954\|Ga0306926_10311116	All Organisms → cellular organisms → Bacteria	1949	Open in IMG/M
3300031954\|Ga0306926_12014094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → unclassified Nitriliruptorales → Nitriliruptorales bacterium	649	Open in IMG/M
3300032054\|Ga0318570_10190935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	924	Open in IMG/M
3300032059\|Ga0318533_10481030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	910	Open in IMG/M
3300032064\|Ga0318510_10129987	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300032068\|Ga0318553_10351378	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300032074\|Ga0308173_11279764	Not Available	687	Open in IMG/M
3300032160\|Ga0311301_10771549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1329	Open in IMG/M
3300032205\|Ga0307472_100448954	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300032261\|Ga0306920_102014318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	808	Open in IMG/M
3300032770\|Ga0335085_11857444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	615	Open in IMG/M
3300032783\|Ga0335079_11229366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	752	Open in IMG/M
3300032828\|Ga0335080_10120962	All Organisms → cellular organisms → Bacteria	2906	Open in IMG/M
3300032828\|Ga0335080_10964262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	871	Open in IMG/M
3300032828\|Ga0335080_11338278	Not Available	714	Open in IMG/M
3300032829\|Ga0335070_10910837	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300032895\|Ga0335074_10046614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5991	Open in IMG/M
3300032897\|Ga0335071_11061953	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300033158\|Ga0335077_10567992	All Organisms → cellular organisms → Bacteria	1189	Open in IMG/M
3300033158\|Ga0335077_11707559	Not Available	595	Open in IMG/M
3300033158\|Ga0335077_12197465	Not Available	507	Open in IMG/M
3300033289\|Ga0310914_10295766	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.20%
Host-Associated	Host-Associated	9.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.24%
Plants	Host-Associated → Plants	9.80%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Cave	Environmental → Terrestrial → Cave	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.65%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	15.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.45%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004468	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 74 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004503	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 79 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004618	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011078	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 50 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024279	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK33	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100907463	3300003218	Bog Forest Soil	TQLSDDAYPHLVLRIGMVIQMAVSVRRDPGDVLFTPGGDHADLRRG*
Ga0068977_10281321	3300004468	Peatlands Soil	IRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0068966_14929261	3300004476	Peatlands Soil	PWLREFIRTQLSDGAYPHLVLRIGVVTQMAISVRRDPGDVLFAPSRDHADLGRG*
Ga0068981_11337272	3300004503	Peatlands Soil	TQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0068963_14242171	3300004618	Peatlands Soil	REFIRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0070690_1012451041	3300005330	Switchgrass Rhizosphere	WLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0068869_1012047171	3300005334	Miscanthus Rhizosphere	TQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0068869_1013298461	3300005334	Miscanthus Rhizosphere	RTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0070709_102100003	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0070714_1003612103	3300005435	Agricultural Soil	EVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0070713_1014641971	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ELPWLREFIRTQLSDGAHPHLVLRVGMVTQVSVSVRRDPEDVLFPAGP*
Ga0070713_1018458471	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ELPWLREFIRTQLSDGAHPHLVLRVGMVTQVSVSVRRDPGDVLFPAGP*
Ga0070710_108050691	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LRTQLGDGACPHLVLRIGLVTQVALSVRREPGDVLFPAGDDRADRGTG*
Ga0070710_108758741	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	EVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0070708_1005520213	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	CGAAVALHSQPLELPWLREFLRTQLGDGACLHLVLRIGLVAQVAVSVRRDPGDVMFPAGH
Ga0070679_1015538292	3300005530	Corn Rhizosphere	GAAVALHSQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0070730_107230941	3300005537	Surface Soil	REFVRTELSDGGYPHLVLRIGLVTQVAVSVRRDPAEILFPA*
Ga0066670_110287301	3300005560	Soil	LPWLREFIRTQLSDSAHPHLVLRVGMVTQVAVSVRRDPEDVLFPAGP*
Ga0068864_1016524871	3300005618	Switchgrass Rhizosphere	QPLELPWLREFIRTQLSDSAHPHLVLRVGMVTQVAVSVRRDPGDVLFPAGP*
Ga0080026_100880933	3300005952	Permafrost Soil	VRGRVTNGQPLELPWLRDFIRTQLSDRACPQLMRRLGTVIQVAVSVRRGPADVLY*
Ga0079222_126431231	3300006755	Agricultural Soil	ELPWLRDFLRTQLGDGACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADRGAG*
Ga0079220_109145931	3300006806	Agricultural Soil	LREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRAGPG*
Ga0079219_108000373	3300006954	Agricultural Soil	CGAAVALHSQPLELPWLREFLRTQLSDGACPHLVLRIGMVTQVAVSVRRDPDEVLFPAGGGRAAPG*
Ga0105245_123221141	3300009098	Miscanthus Rhizosphere	QLSDASCPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDHADPAPG*
Ga0116214_12349333	3300009520	Peatlands Soil	ELAWLREFIRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG*
Ga0116217_110270531	3300009700	Peatlands Soil	IRTHLSDGAYPHLVLRIGMVTQAADSVRRDPDDVLLSPDGGHAGPGRR*
Ga0116219_108118572	3300009824	Peatlands Soil	IRTKLSDGAYPHLVLRIGMVTQVAVSVRRDPRDVLLTPSGDHAGLSCG*
Ga0134086_103747772	3300010323	Grasslands Soil	RLTELELPWLREFLRTQLSDDACPHLVLRIGMVTQVAVSVRRDPGEVLFPVGGDRAAPG*
Ga0126377_116999371	3300010362	Tropical Forest Soil	FIRAQLGDGACPHLVLRIGLVTQVAVSVRRDPEDVLFPAGP*
Ga0134128_116338301	3300010373	Terrestrial Soil	SQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG
Ga0126381_1005286703	3300010376	Tropical Forest Soil	ELPWLREFIRTELSDGACPHLVLRIGLVTQVAASVRREPGDVLFATGGDSASPG*
Ga0136449_1011783423	3300010379	Peatlands Soil	PWLRDYIRTHLSDGAYPHLVLRIGMVTQAADSVRRDPDDVLLSPDDGHAGPGS*
Ga0134126_102755803	3300010396	Terrestrial Soil	REVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG*
Ga0134126_111189813	3300010396	Terrestrial Soil	REVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRAGPAPS*
Ga0138565_10267473	3300011078	Peatlands Soil	TKLSGGAYPHLVLRIGMVTQAAVSVRRHPDDVLFSSGGDHVSPARA*
Ga0138573_12872223	3300011089	Peatlands Soil	REFIRTQLSDGAYPHLVLRIGVVTQMAISVRRDPGDVLFAPSRDHADLGRG*
Ga0137370_102780251	3300012285	Vadose Zone Soil	ALDSQPLELPWLREVLRTQLSDASCPHLVLRIGLVTQVAVSVRRDPGEVLFPAGDDRACHDTG*
Ga0157341_10376352	3300012494	Arabidopsis Rhizosphere	LRTQLSDGAYPHLVLRIGLVTQVALSVRRDLGDVLFPAGDDRADRGPG*
Ga0157378_120403821	3300013297	Miscanthus Rhizosphere	PWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0157372_103452633	3300013307	Corn Rhizosphere	AVALHSQPLELPWLGEFHRKQLSDGACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG*
Ga0187783_107361313	3300017970	Tropical Peatland	QPTELPLLREFIRTKLSGGAYPHLVLRIGMVTQASVSVRRHPDDVLFSSGGGHAGLART
Ga0187781_104081723	3300017972	Tropical Peatland	ALHSQPTELPLLRDFIRTKLSSGAYPHLVLRIGMVTQASVSVRRDPDEVLFSSGGGHVGLARA
Ga0187766_102684541	3300018058	Tropical Peatland	REFIRTQLSDQAYPHLVLRIGMVTQVAVGVRRDPGDVLYASGGDHVSLGAG
Ga0187765_104289223	3300018060	Tropical Peatland	QPLELPWLREFIRTQLSDDACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0187784_100932094	3300018062	Tropical Peatland	ELPLLRDFIRTKLSSGAYPHLVLRIGMVTQASVSVRRDPDEVLFSSGGGHVGLART
Ga0210395_104561041	3300020582	Soil	WLREFIRIQLSDGAYPHLVLRFGLVTQVAVSARRDPGDVLFPTDGDAAVPSVPGR
Ga0210394_101170701	3300021420	Soil	LSAQLGDSACPHLVLRIGLVTQVALSVRRDPGDVLFPTGDDRAGRALG
Ga0187846_103194601	3300021476	Biofilm	REFIRTKLSDGAYPHVVLRIGMVTQAAVSVRRGLDEVLLSFGDDHARIALR
Ga0210402_103799673	3300021478	Soil	LKTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0247692_10695522	3300024279	Soil	SQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0207699_100882833	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AVALHSQPLELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPVGDDRADSAPG
Ga0207671_110625062	3300025914	Corn Rhizosphere	LREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRAGPAPS
Ga0207693_107942031	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GLPWLREFIRTELSDGAFPHLVLRIGLVPQVAVSVRRDPADVLFPAGP
Ga0207664_103722491	3300025929	Agricultural Soil	MRDFLRTQLGDGACPHLVLRIGLVTQVALSVRREPGDVLFPAGDDRADRGTG
Ga0207640_114387942	3300025981	Corn Rhizosphere	REVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0207676_102952261	3300026095	Switchgrass Rhizosphere	ELPWLREVLRTQLSDAACPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0209839_100478173	3300026294	Soil	VTNGQPLELPWLRDFIRTQLSDRACPQLMRRLGTVIQVAVSVRRGPADVLY
Ga0209154_12079813	3300026317	Soil	AVALHSQPLELPWLREFLRTQLGDGACPHLVLRIGLVTQVALSVRREPGDVLFPAGDDRAGRGPS
Ga0208696_12665612	3300027696	Peatlands Soil	DYIRTHLSDGAYPHLVLRIGMVTQAADSVRRDPDDVLLSPDDGHAGPGS
Ga0209656_100304721	3300027812	Bog Forest Soil	REFIRTQLSDGAYPHLVLRIGMVTQAAVSVRRDPRDVLFAPGGDHAVLGRG
Ga0318571_100073861	3300031549	Soil	IRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADVLFSPDGDGGV
Ga0318573_100810021	3300031564	Soil	IRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV
Ga0318573_107886092	3300031564	Soil	FIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRVGPG
Ga0318515_101027573	3300031572	Soil	FIRSQLSDGACPHLVLRIGLVTQMAVSVRRDLGDVLFPVGGDRAGPG
Ga0318515_102069851	3300031572	Soil	ELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRAGPG
Ga0310915_103955001	3300031573	Soil	LLTASTCGAAVALHSQPLELPWLREFIGTQLSDGACPHLVLRIGLVTQAAVSVRRDPGDLLFPIGGDRAGPG
Ga0318560_107675401	3300031682	Soil	PLELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRVGPG
Ga0318501_106690592	3300031736	Soil	TQLSDGAYPQLVLRIGMVAQVSVSVRRDLDDVLFASGGDRVGAVPS
Ga0318502_102570611	3300031747	Soil	ELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDSASPG
Ga0318492_104815261	3300031748	Soil	RTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDSASPG
Ga0318494_105949333	3300031751	Soil	QPLELPWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRVGPG
Ga0318526_102015812	3300031769	Soil	RTDLSDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV
Ga0318498_100317664	3300031778	Soil	EFIRSQLSDGACPHLVLRIGLVTQMAVSVRRDLGDVLFPVGGDRAGPG
Ga0318498_102341381	3300031778	Soil	PWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0318547_100451684	3300031781	Soil	LELPWLREFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDPGDVMFPIGGDRASPG
Ga0318565_101051231	3300031799	Soil	SDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV
Ga0318497_104738271	3300031805	Soil	PWLREFIRTQLSDGAYPHLVLRIGLVTQVAVSVRREPDEVLFSAGAVSRPVT
Ga0318567_100714553	3300031821	Soil	LRELIRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADVLFSPDGDGGV
Ga0307478_118004911	3300031823	Hardwood Forest Soil	LREFIRAQLSDGAYPHLVLRIGMITQVAVSVRRDPGDVLFPTGGDDVSADRG
Ga0318522_103451652	3300031894	Soil	LREFIRTQLSDQAYPHLVLRIGMVTQVAVGVRRDSGDVLFASGGDHVSLAAG
Ga0306926_103111163	3300031954	Soil	LPWLRELIRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADVLFSPDGDGGV
Ga0306926_120140941	3300031954	Soil	PWLREFIRTQLSDQAYPHLVLRIGMVTQVAVGVRRDPGDVLFASGGDHVSLAAG
Ga0318570_101909353	3300032054	Soil	ELPWLREFIRTQLSDSACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0318533_104810301	3300032059	Soil	GAAVALHSQPMELPWLRELIRTDLSDAAYPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRASPG
Ga0318510_101299873	3300032064	Soil	LREFIRTQLSDDACPHLVLRIGLVTQVAVSVRRDPDDVLFPIGGDRASPG
Ga0318553_103513781	3300032068	Soil	LPWLREFIRIRLSDQAYPHLVLRIGMVTQVAVSMRRDPGDVLFASGADHVGLGVG
Ga0308173_112797641	3300032074	Soil	LLTASVCGAAVALHSQPVELPWLREFLGTQLGDGACPHLVLRIGLVAQVAVSARRDPGEVLFQAGDDRAGRDPS
Ga0311301_107715493	3300032160	Peatlands Soil	FIRTQLSDGAYPHLVLRIGMVTQMAVSVRRDPGDVLFVPGGDHADLGRG
Ga0307472_1004489543	3300032205	Hardwood Forest Soil	LSDASCPHLVLRIGLVTQVALSVRRDPGDVLFPAGDDHADPAPG
Ga0306920_1020143181	3300032261	Soil	REFIRTQLSDGACPHLVLRIGLVTQVAVSVRRDLGDVLFPVGGDRAGPG
Ga0335085_118574442	3300032770	Soil	RILLTASICGAAVALDSQPLELPWLREVLRTQLSDAACPHLALRIGLVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0335079_112293662	3300032783	Soil	PMLREFIRTQLSDGAYPHLVLRIGLVIQAAVSVRRDPGDVLFASGGDRAGAGAS
Ga0335080_101209623	3300032828	Soil	PLELPWLREFIRTQLSDDGYPHLVLRFGMVAQAAVSVRRDPGDVLFASGGDRAGAGAS
Ga0335080_109642623	3300032828	Soil	PWLREFLRTQLSDGACPHLVLRIGMVTQVAVSVRRDPDEVLFPAGGDRAAPG
Ga0335080_113382783	3300032828	Soil	LDSQPLELPWLREVLRTQLSDAACPHLVLRIGMVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0335070_109108373	3300032829	Soil	EFIRTQLSDDAYPHLVLRIGMVTQAAVSVRRDPADVLFAPGGDRAALR
Ga0335074_100466145	3300032895	Soil	WLREFIRTQLSGGAYPHVVLRIGMAVQAADSVRRGVDDVLFPSDAAAPSSN
Ga0335071_110619531	3300032897	Soil	IRTQLGDDACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGPG
Ga0335077_105679923	3300033158	Soil	QPLELPWLREFIRTQLSDDACPHLVLRIGLVTQVAVSVRRDPGDVLFPIGGDRAGAG
Ga0335077_117075592	3300033158	Soil	TASVCGAAVALDSQPLELPWLREVLRTQLSDASCPHLVLRIGMVTQVALSVRRDPGDVLFPAGDDRADPAPG
Ga0335077_121974652	3300033158	Soil	IRTHLSDDAYPHLVLRIGMVTQAAVSVRRDPADVLLAPGGGHAGLG
Ga0310914_102957661	3300033289	Soil	MELPWLRELIRTDLSDAAYPHLVLRIGLVTQAASSVRRQLADILFSPDGDGGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100886

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences