Metagenome / Metatranscriptome Family F100882

Basic Information
Family ID	F100882
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	40 residues
Representative Sequence	KINSADVGVDGPTSRMISMSFVALYDATEGTNLKITRPA
Number of Associated Samples	96
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	6.86 %
% of genes from short scaffolds (< 2000 bps)	6.86 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Most Common Taxonomy
Group	Unclassified (95.098 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (27.451 % of family members)
Environment Ontology (ENVO)	Unclassified (74.510 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (80.392 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF06791	TMP_2	5.88
PF13550	Phage-tail_3	4.90
PF09718	Tape_meas_lam_C	0.98
PF05367	Phage_endo_I	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG5281	Phage-related minor tail protein	Mobilome: prophages, transposons [X]	5.88

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
All Organisms	root	All Organisms	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Viruses	superkingdom	All Organisms → Viruses	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	95.10 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.96 %

Scaffold	Taxonomy	Length	IMG/M Link
3300007552\|Ga0102818_1024405	All Organisms → Viruses → Predicted Viral	1194	Open in IMG/M
3300009426\|Ga0115547_1068166	All Organisms → Viruses → Predicted Viral	1215	Open in IMG/M
3300010316\|Ga0136655_1131935	Not Available	748	Open in IMG/M
3300017824\|Ga0181552_10402048	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	656	Open in IMG/M
3300025083\|Ga0208791_1075904	Not Available	549	Open in IMG/M
3300025151\|Ga0209645_1146676	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	730	Open in IMG/M
3300028115\|Ga0233450_10393073	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	552	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	98.04%
Terrestrial	Environmental → Terrestrial	0.98%
Algae	Host-Associated → Algae	0.98%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	91.18%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.92%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.98%
Green Algae	Host-Associated → Algae → Green Algae	0.98%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	36.27%
Oceanic	Environmental → Aquatic → Marine → Oceanic	13.73%
Pelagic	Environmental → Aquatic → Marine → Pelagic	11.76%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	10.78%
Strait	Environmental → Aquatic → Marine → Strait	10.78%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.90%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.98%
Inlet	Environmental → Aquatic → Marine → Inlet	0.98%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.98%
Sediment	Environmental → Aquatic → Marine → Sediment	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.98%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	35.29%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	13.73%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	10.78%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.90%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.90%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.98%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.98%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.98%
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	27.45%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	13.73%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	10.78%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	9.80%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.90%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	4.90%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.92%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.96%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.96%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.96%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	1.96%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	0.98%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.98%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.98%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.98%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.98%
Enviromental	Environmental → Aquatic → Marine → Unclassified → Unclassified → Enviromental	0.98%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.98%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.98%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.98%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.98%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.98%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	0.98%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.98%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000418	Marine microbial community from Union City, CA, USA - Pond 2C Liquid 1	Environmental	Open in IMG/M
3300000973	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93	Host-Associated	Open in IMG/M
3300001355	Pelagic Microbial community sample from North Sea - COGITO 998_met_08	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005601	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M
3300006925	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG	Environmental	Open in IMG/M
3300007231	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007552	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.571	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300007655	Estuarine microbial communities from the Columbia River estuary - High salinity metaG S.579	Environmental	Open in IMG/M
3300007725	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_B_H2O_MG	Environmental	Open in IMG/M
3300008961	Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02	Environmental	Open in IMG/M
3300008963	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R1_B_H2O_MG	Environmental	Open in IMG/M
3300009026	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575	Environmental	Open in IMG/M
3300009077	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328	Environmental	Open in IMG/M
3300009426	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420	Environmental	Open in IMG/M
3300009434	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516	Environmental	Open in IMG/M
3300009435	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413	Environmental	Open in IMG/M
3300009442	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519	Environmental	Open in IMG/M
3300009507	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607	Environmental	Open in IMG/M
3300009508	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412	Environmental	Open in IMG/M
3300009608	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010316	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA	Environmental	Open in IMG/M
3300016703	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041407CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017735	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21	Environmental	Open in IMG/M
3300017739	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017772	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10	Environmental	Open in IMG/M
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental	Open in IMG/M
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental	Open in IMG/M
3300017786	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18	Environmental	Open in IMG/M
3300017824	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017950	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)	Environmental	Open in IMG/M
3300018629	Metatranscriptome of marine microbial communities from Baltic Sea - GS852_ls4	Environmental	Open in IMG/M
3300019739	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_8-9_MG	Environmental	Open in IMG/M
3300019741	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_6-7_MG	Environmental	Open in IMG/M
3300020165	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1	Environmental	Open in IMG/M
3300021365	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300022057	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)	Environmental	Open in IMG/M
3300022061	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)	Environmental	Open in IMG/M
3300022065	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)	Environmental	Open in IMG/M
3300022072	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)	Environmental	Open in IMG/M
3300022074	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)	Environmental	Open in IMG/M
3300022158	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v3)	Environmental	Open in IMG/M
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022308	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24	Environmental	Open in IMG/M
3300022925	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG	Environmental	Open in IMG/M
3300023501	Saline water microbial communities from Ace Lake, Antarctica - #1159	Environmental	Open in IMG/M
3300024267	Seawater microbial communities from Monterey Bay, California, United States - 28D	Environmental	Open in IMG/M
3300024508	Seawater microbial communities from Monterey Bay, California, United States - 77D	Environmental	Open in IMG/M
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental	Open in IMG/M
3300024529 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_21	Environmental	Open in IMG/M
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental	Open in IMG/M
3300025083	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)	Environmental	Open in IMG/M
3300025084	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025093	Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025151	Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)	Environmental	Open in IMG/M
3300025508	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025543	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025632	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)	Environmental	Open in IMG/M
3300025641	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506 (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025653	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025674	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025771	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025806	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025832	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes)	Environmental	Open in IMG/M
3300025887	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300027229	Estuarine microbial communities from the Columbia River estuary - metaG 1549B-3 (SPAdes)	Environmental	Open in IMG/M
3300027553	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)	Environmental	Open in IMG/M
3300028025	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC	Environmental	Open in IMG/M
3300028115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501CT (spades assembly)	Environmental	Open in IMG/M
3300028338	Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 15R (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031141	Marine microbial communities from water near the shore, Antarctic Ocean - #351	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental	Open in IMG/M
3300031626	Marine microbial communities from Western Arctic Ocean, Canada - CB21_surface	Environmental	Open in IMG/M
3300031658	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #78	Environmental	Open in IMG/M
3300031702	Marine microbial communities from David Island wharf, Antarctic Ocean - #37	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
P_2C_Liq_1_UnCtyDRAFT_100144211	3300000418	Enviromental	VKINSADVGVDGPTSRIINMSFVALYDSTEGTNLKITRPA*
BBAY93_100301521	3300000973	Macroalgal Surface	NPYTFLFPRIKINSADVGVDGPTSRMISCSFVALYDTTATATGTNLLITRTA*
JGI20158J14315_100665844	3300001355	Pelagic Marine	RVKINSADVGVDGPTSRIISLAFTALYDTTTTSNLKITRTD*
Ga0074648_12265001	3300005512	Saline Water And Sediment	NSADVGVDGPTSRIVNISFVALYDSTEGTNLSITRA*
Ga0070722_104118972	3300005601	Marine Sediment	MKFAFPRAKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA*
Ga0075466_11795302	3300006029	Aqueous	KINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSS*
Ga0098054_10670214	3300006789	Marine	DVGVDGPTSRIITMSFVALYNTADDTNLVITRSS*
Ga0075467_100494341	3300006803	Aqueous	INSADVGVDGPTSRMISMSFVALYDATEGTNLKITRPA*
Ga0070750_101278441	3300006916	Aqueous	ANAYTFLFPRVKINSADVGVDGPTSRIISLAFTALYDTTTASNLKITRTDS*
Ga0098045_11445311	3300006922	Marine	SADVGVDGPTSRIVSMEFVGLYDTGETSNMEITRTS*
Ga0098050_10514593	3300006925	Marine	RIKVNSADLGVDGPTSRIVNISFVALRDTTEATNLKITRS*
Ga0098050_11475772	3300006925	Marine	SNTLKFAFPRAKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA*
Ga0075469_100635931	3300007231	Aqueous	ADVGVDGPTSRMISLSFVALYDATEGTNLKITRPA*
Ga0070747_11743771	3300007276	Aqueous	VKINSADVGVDGPTSRMISMSFVALYDTTEGTNLKITRPV*
Ga0070752_13900741	3300007345	Aqueous	NTMKFAFPRAKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA*
Ga0099846_10120661	3300007542	Aqueous	INSADVGVDGPTSRMISLSFVALYDATEGTNLKITRPA*
Ga0099846_12501851	3300007542	Aqueous	SADVGVDGPTSRVISLSFVALYNTADASNLVITRSA*
Ga0102818_10244053	3300007552	Estuarine	NGADVPVGGQTGSRIVQMPFVAIYDATEGTNFFINRPDST*
Ga0070751_13568932	3300007640	Aqueous	ADVGVDGPTSRILNISFVALYDSTESSNLVITRA*
Ga0102825_10244671	3300007655	Estuarine	GADVPVGGQTGSRMISIPFVAIYDATEGTNFMITRPDTTV*
Ga0102951_12127431	3300007725	Water	ADVNVTGPEGRFVEMSFVSLYDSTEDTNLKITRPA*
Ga0102887_12804521	3300008961	Estuarine	KVKINSADVGVDGPTSRIINLSFVSLYDSTEGSNLVITKQV*
Ga0102930_10497413	3300008963	Pond Water	PVDGQTSRIITLPFVALYDATTETNLMIQRPDTT*
Ga0102829_10539064	3300009026	Estuarine	KINSADVGVDGPTSRMITMSFVALYDSTEGTNLKITRPA*
Ga0115552_11220581	3300009077	Pelagic Marine	VKINSADVGVDGPTSRVISLGFTALFDTTTASNLKITRTDT*
Ga0115547_10681664	3300009426	Pelagic Marine	DVGVDGPTSRVISLSFVALYNTADASNLVITRSA*
Ga0115562_12603822	3300009434	Pelagic Marine	VKINSADVGVDGPTSRMISMSFVALYDATEGTNLKITRPA*
Ga0115546_10874491	3300009435	Pelagic Marine	FPRAKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA*
Ga0115563_10217611	3300009442	Pelagic Marine	DVGVDGPTSRIISLSFTALYDTTLDTNLKIVRTPT*
Ga0115572_100511271	3300009507	Pelagic Marine	KVKINSADVGVDGPTSRMISMSFVALYDATEGTNLKITRTA*
Ga0115567_100538134	3300009508	Pelagic Marine	SADVGVDGPTSRMISMSFVALYDATEGTNLKITRTA*
Ga0115100_110997051	3300009608	Marine	AYTFQFPRVKINSADTGVDGPTSRMVTMSFVALRDTTEATNLKITRPS*
Ga0098061_12833302	3300010151	Marine	INSADTSVGGPESRMVECSFVALYDSTEATNLKITRPS*
Ga0136655_10465531	3300010316	Freshwater To Marine Saline Gradient	ADVPVDGGTGSRVITLPFVALYDATEGSNLVISRPDTSA*
Ga0136655_11319352	3300010316	Freshwater To Marine Saline Gradient	VDGGTGSRVISLPFVALYDATEGTNFYIERPDSNA*
Ga0182088_11199521	3300016703	Salt Marsh	INSADVGVDGPTSRIVNISFVALYDSTESSNLVITRA
Ga0181431_10074534	3300017735	Seawater	FPKVKINSADVGVDGPTSRMISMSFVALYDATEATNLKITRTS
Ga0181433_10219691	3300017739	Seawater	TLKFAFPRAKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA
Ga0181402_10418134	3300017743	Seawater	NSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA
Ga0181397_10023411	3300017744	Seawater	KINSADVGVDGPTSRIVNLTFVALRDNSEDTNLRITRS
Ga0181430_10115721	3300017772	Seawater	VKINSADVGVDGPTSRMISMSFVALYDATEATNLKITRPS
Ga0181394_10172711	3300017776	Seawater	AKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA
Ga0181380_12993881	3300017782	Seawater	PRAKINSADVGVDGPTSRVISLSFVALYNTTDASNLVITRSA
Ga0181424_103770322	3300017786	Seawater	KFAFPRAKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA
Ga0181552_104020481	3300017824	Salt Marsh	VKINSADVGVDGPTSRIITASFIALRDDTANTNLQITRSPDP
Ga0181607_106529672	3300017950	Salt Marsh	DVGVDGPTSRVISLSFVALYDSTEQSNLVITKPAA
Ga0188875_10110501	3300018629	Freshwater Lake	PRIKINSADVGVDGPGSRMITCSFVALYDTTATATGTNLLITRTS
Ga0194012_10411261	3300019739	Sediment	AKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA
Ga0194020_10445401	3300019741	Sediment	FPRAKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA
Ga0206125_101717742	3300020165	Seawater	ADVGVDGPTSRMISMSFVALYDATEGTNLKITRPA
Ga0206123_103016842	3300021365	Seawater	TMEFFFPRCKINSADVGVDGPTSRIVNLTFVALRDSSEATNLRITRS
Ga0213865_100253011	3300021373	Seawater	AFPRAKINSADVGVDGPTSRVISMSFVALYDTTDASNLVITRSS
Ga0212025_10294083	3300022057	Aqueous	KVNSADVGVDGPLSRLITMSFVALYDSTEGTNFKISRPETA
Ga0212023_10413621	3300022061	Aqueous	DVPVDGGTGSRVITLPFVALYDATENTNFYINRPDSNA
Ga0212024_11023261	3300022065	Aqueous	PRCKINSADVGVDGPTSRIVSMEFVGLYDTDEASNMEITRTS
Ga0196889_10623752	3300022072	Aqueous	VKINSADVGVDGPTSRMISMSFVALYDATEGTNLKITRPA
Ga0224906_10172383	3300022074	Seawater	AKINSADVGVDGPTSRVITMSFVALHNTTDASNLVITRSA
Ga0196897_10297061	3300022158	Aqueous	VGVDGPLSRLITMSFVGLYDSTEGTNFKISRPETA
Ga0196905_11255212	3300022198	Aqueous	FPRIKINSADVGVGGPESRMVECAFVGLYDTTEATNLKITRPA
Ga0196901_10134751	3300022200	Aqueous	KINSADVGVDGPTSRMISLSFVALYDATEGTNLKITRPA
Ga0224504_100403251	3300022308	Sediment	PRAKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA
Ga0255773_100084047	3300022925	Salt Marsh	FPRAKINSADVGVDGPTSRVISMSFVALYNTADASNLVITRSA
Ga0222686_10465061	3300023501	Saline Water	KINSADVGVEGPTSRIISLSFTSLFDTTTSTNLKITRTDT
Ga0228623_10437191	3300024267	Seawater	MEFFFPRCKINSADVGVDGPTSRIVNLSFVALRDPTEATNLRITRS
Ga0228663_10824422	3300024508	Seawater	RCKINSADVGLEGPTSRIVNLSFVALRDPTEATNLRITRS
(restricted) Ga0255047_106833362	3300024520	Seawater	EGTPNTMEFFFPRCKINSADVGVDGPTSRVISLSFVALRDDTEETNLRITRT
(restricted) Ga0255044_101706942	3300024529	Seawater	FPRAKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA
(restricted) Ga0255044_101874761	3300024529	Seawater	RVKINSADVGVDGPTSRMISMSFVALYDTTEGTNLKITRPS
Ga0208920_10184211	3300025072	Marine	NSADVGVGGPTSRIITMSFVALYNTADDTNLVITRSS
Ga0208791_10759042	3300025083	Marine	SADVGVDGPTSRIVSMEFVGLYDTGETSNMEITRTS
Ga0208298_10403111	3300025084	Marine	ADVGVDGPTSRVISLSFTSLFDTTTATNLKITRTDT
Ga0208794_10450341	3300025093	Marine	KINSADTSVGGPDSRMVECSFVSLYDSTEETNLKITRPS
Ga0208013_10018641	3300025103	Marine	KINSADVGVDGPNSRIINMSFVALYDSTEETNLKITRS
Ga0208793_10733921	3300025108	Marine	DVGVEGPLSRLITMSFVAIYDSTEGTNFKISRPETA
Ga0209645_11466762	3300025151	Marine	RAKINSADVGVDGPTSRVISLSFVALYNTTDASNLVITRSA
Ga0208148_10214754	3300025508	Aqueous	NTMKFAFPRAKINSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSA
Ga0208303_10598453	3300025543	Aqueous	NSADVGVDGPTSRVISMSFVALYNTTDASNLVITRSS
Ga0209194_10637371	3300025632	Pelagic Marine	PRAKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA
Ga0209833_10671414	3300025641	Pelagic Marine	TLEFFFPRCKINSADVGVDGPTSRVISLSFVALRDETEATNLRITRT
Ga0208160_10730783	3300025647	Aqueous	YIKINSADANVGGPEGRFVECSFVALYDATEESNLVIKRPDTT
Ga0208428_10404231	3300025653	Aqueous	NTMKFAFPRAKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA
Ga0208795_10146944	3300025655	Aqueous	SADVGVDGPTSRMISLSFVALYDATEGTNLKITRPA
Ga0208162_10689621	3300025674	Aqueous	SKINSADTSVGGPDSRMVECSFVSLYDSTEETNLKITRPS
Ga0208427_10112414	3300025771	Aqueous	SADVGVDGPTSRVVSMSFVALYDTTEATNLKITRSA
Ga0208545_10909122	3300025806	Aqueous	TMEFFFPRCKINSADVGVDGPTSRVISMTFVALRDDTEETNLRITRT
Ga0208545_11414572	3300025806	Aqueous	RVEINSADVGVDGPTSRMISLSFVALYDATEGTNLKITRPA
Ga0209307_10075196	3300025832	Pelagic Marine	KVKINSADVGVDGPTSRMVSMSFVALFDSTEATNLKITRPS
Ga0208544_100356294	3300025887	Aqueous	KINSADVGVDGPTSRMISMSFVALYDATEGTNLKITRPA
Ga0208644_10597581	3300025889	Aqueous	KINSADVGVDGPTSRVISMSFVALYNTADASNLVITRSA
Ga0208442_10792842	3300027229	Estuarine	VKINSADVGVDGPTSRMISLSFVALYDATEGTNLKITRPA
Ga0208947_10574103	3300027553	Marine	FFPRCKINSADVGVDGPTSRIVNLTFVALRDSSEATNLRITRS
Ga0247723_100083832	3300028025	Deep Subsurface Sediment	AYTFLFPRVKINSADVGVDGPTSRIIKMSFVSLFDTTQATNLKITRPA
Ga0233450_103930732	3300028115	Salt Marsh	AFPRAKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA
Ga0247567_11354731	3300028338	Seawater	FFFPRCKINSADVGVDGPTSRIVNLSFVALRDPTEATNLRITRS
Ga0308021_102356481	3300031141	Marine	EFFFPRCKINSADVGVDGPTSRMIAMSFVALRDDTEATSLRITRS
Ga0307488_100045831	3300031519	Sackhole Brine	SADVGVDGPTSRIVNLSFVALRDSTEATNLRITRS
Ga0307488_107941942	3300031519	Sackhole Brine	DVGVDGPTSRIISLSFTSLFDTTTSTNLKITRTDT
Ga0302114_103023082	3300031621	Marine	ADVGVDGPTSRIISLSFTSLFDTTTSTNLKITRTDT
Ga0302121_100553244	3300031626	Marine	NSADVGVDGPTSRVISMSFTALYDTTANTNLKIVRTPFT
Ga0307984_10800771	3300031658	Marine	NSADVGVDGPTSRMVTMSFVALFDSTLGTNLQITRPT
Ga0307998_10401424	3300031702	Marine	FDFPRVKINSADVGVDGPTSRMVTMSFVALFDSTLGTNLQITRPT
Ga0348337_023772_2_127	3300034418	Aqueous	RAKINSADVGVDGPTSRVISLSFVALYNTADASNLVITRSA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100882

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign