Metagenome / Metatranscriptome Family F100865

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100865
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	43 residues
Representative Sequence	HGVKIGDTKIGVQTQSSEKLPPAVGIVLLAGGVLALVLGSRKT
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.647 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (10.784 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.176 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.58% β-sheet: 0.00% Coil/Unstructured: 70.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00282	Pyridoxal_deC	8.82
PF00581	Rhodanese	3.92
PF03641	Lysine_decarbox	3.92
PF14716	HHH_8	2.94
PF02274	ADI	2.94
PF01042	Ribonuc_L-PSP	1.96
PF07238	PilZ	1.96
PF05163	DinB	1.96
PF01594	AI-2E_transport	1.96
PF02371	Transposase_20	0.98
PF02586	SRAP	0.98
PF02954	HTH_8	0.98
PF01740	STAS	0.98
PF12779	WXXGXW	0.98
PF07676	PD40	0.98
PF00202	Aminotran_3	0.98
PF00112	Peptidase_C1	0.98
PF13490	zf-HC2	0.98
PF01230	HIT	0.98
PF01165	Ribosomal_S21	0.98
PF04134	DCC1-like	0.98
PF00486	Trans_reg_C	0.98
PF00903	Glyoxalase	0.98
PF05598	DUF772	0.98
PF06202	GDE_C	0.98
PF01145	Band_7	0.98
PF00912	Transgly	0.98
PF00106	adh_short	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	8.82
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	3.92
COG1834	N-Dimethylarginine dimethylaminohydrolase	Amino acid transport and metabolism [E]	2.94
COG2235	Arginine deiminase	Amino acid transport and metabolism [E]	2.94
COG4874	Uncharacterized conserved protein	Function unknown [S]	2.94
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.96
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.96
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.96
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.98
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.98
COG3011	Predicted thiol-disulfide oxidoreductase YuxK, DCC family	General function prediction only [R]	0.98
COG3408	Glycogen debranching enzyme (alpha-1,6-glucosidase)	Carbohydrate transport and metabolism [G]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.98
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.65 %
Unclassified	root	N/A	32.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.65 %
Unclassified	root	N/A	32.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.65 %
Unclassified	root	N/A	32.35 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	54.90 %
Unclassified	root	N/A	32.35 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	32.35 %
Unclassified	root	N/A	32.35 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.35 %
Unclassified	root	N/A	32.35 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.35 %
Unclassified	root	N/A	32.35 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.35 %
Unclassified	root	N/A	32.35 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.90 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	2.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.35 %
Unclassified	root	N/A	32.35 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.92 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.98 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	32.35 %
Unclassified	root	N/A	32.35 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.92 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.98 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001170\|JGI12704J13340_1009392	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300001593\|JGI12635J15846_10622147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	626	Open in IMG/M
3300002245\|JGIcombinedJ26739_100614167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	965	Open in IMG/M
3300002245\|JGIcombinedJ26739_100954407	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300003505\|JGIcombinedJ51221_10421816	Not Available	541	Open in IMG/M
3300003505\|JGIcombinedJ51221_10482831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300004631\|Ga0058899_12172409	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	891	Open in IMG/M
3300005454\|Ga0066687_10102158	Not Available	1449	Open in IMG/M
3300005542\|Ga0070732_10549281	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	701	Open in IMG/M
3300005586\|Ga0066691_10768323	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300005602\|Ga0070762_10218889	Not Available	1172	Open in IMG/M
3300005713\|Ga0066905_100145704	All Organisms → cellular organisms → Bacteria → Acidobacteria	1697	Open in IMG/M
3300005764\|Ga0066903_101921884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1134	Open in IMG/M
3300005921\|Ga0070766_10318788	Not Available	1002	Open in IMG/M
3300005921\|Ga0070766_10637039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300006057\|Ga0075026_100983934	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300006059\|Ga0075017_100813319	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300006791\|Ga0066653_10200018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1011	Open in IMG/M
3300007788\|Ga0099795_10627522	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300009630\|Ga0116114_1035518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1446	Open in IMG/M
3300009631\|Ga0116115_1183386	Not Available	529	Open in IMG/M
3300009634\|Ga0116124_1121311	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300009639\|Ga0116122_1076849	Not Available	1101	Open in IMG/M
3300009764\|Ga0116134_1280087	Not Available	574	Open in IMG/M
3300009824\|Ga0116219_10630578	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300010343\|Ga0074044_10559605	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300010379\|Ga0136449_100281955	All Organisms → cellular organisms → Bacteria	3049	Open in IMG/M
3300010379\|Ga0136449_102616811	Not Available	719	Open in IMG/M
3300012203\|Ga0137399_11424361	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300012971\|Ga0126369_10499288	Not Available	1274	Open in IMG/M
3300013307\|Ga0157372_10328577	Not Available	1780	Open in IMG/M
3300014152\|Ga0181533_1059223	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1913	Open in IMG/M
3300014156\|Ga0181518_10172815	Not Available	1141	Open in IMG/M
3300014158\|Ga0181521_10050480	All Organisms → cellular organisms → Bacteria → Acidobacteria	2873	Open in IMG/M
3300014162\|Ga0181538_10124601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1498	Open in IMG/M
3300014165\|Ga0181523_10360642	Not Available	813	Open in IMG/M
3300014165\|Ga0181523_10639040	Not Available	583	Open in IMG/M
3300014199\|Ga0181535_10787649	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	539	Open in IMG/M
3300014638\|Ga0181536_10358413	Not Available	662	Open in IMG/M
3300014654\|Ga0181525_10117983	All Organisms → cellular organisms → Bacteria	1462	Open in IMG/M
3300015371\|Ga0132258_11559655	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1667	Open in IMG/M
3300016404\|Ga0182037_11520655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300016730\|Ga0181515_1076253	All Organisms → cellular organisms → Bacteria	7772	Open in IMG/M
3300017934\|Ga0187803_10483241	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300017946\|Ga0187879_10615729	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300017955\|Ga0187817_10991899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300018006\|Ga0187804_10448491	Not Available	576	Open in IMG/M
3300018009\|Ga0187884_10039988	Not Available	2258	Open in IMG/M
3300018012\|Ga0187810_10460388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300018019\|Ga0187874_10074434	Not Available	1518	Open in IMG/M
3300018020\|Ga0187861_10244582	Not Available	785	Open in IMG/M
3300018038\|Ga0187855_10530522	Not Available	686	Open in IMG/M
3300018042\|Ga0187871_10136176	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1394	Open in IMG/M
3300018043\|Ga0187887_10627532	Not Available	634	Open in IMG/M
3300018057\|Ga0187858_10290671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1038	Open in IMG/M
3300018057\|Ga0187858_10517994	Not Available	727	Open in IMG/M
3300018086\|Ga0187769_10940650	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300019082\|Ga0187852_1026975	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300020199\|Ga0179592_10484400	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300021407\|Ga0210383_11476760	Not Available	563	Open in IMG/M
3300021432\|Ga0210384_11361455	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300021478\|Ga0210402_10507214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1120	Open in IMG/M
3300021478\|Ga0210402_10904412	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300021559\|Ga0210409_10243393	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1630	Open in IMG/M
3300021559\|Ga0210409_10258234	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1576	Open in IMG/M
3300021559\|Ga0210409_10948041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	735	Open in IMG/M
3300021560\|Ga0126371_12890852	Not Available	582	Open in IMG/M
3300025444\|Ga0208189_1014217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1824	Open in IMG/M
3300025903\|Ga0207680_10111136	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1777	Open in IMG/M
3300025906\|Ga0207699_10288736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1142	Open in IMG/M
3300025913\|Ga0207695_11113005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300025916\|Ga0207663_10092274	All Organisms → cellular organisms → Bacteria	2013	Open in IMG/M
3300025917\|Ga0207660_10277656	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1329	Open in IMG/M
3300026294\|Ga0209839_10141832	All Organisms → cellular organisms → Bacteria → Acidobacteria	798	Open in IMG/M
3300026928\|Ga0207779_1040632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300027535\|Ga0209734_1122392	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300027590\|Ga0209116_1130565	Not Available	549	Open in IMG/M
3300027604\|Ga0208324_1038575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1419	Open in IMG/M
3300027654\|Ga0209799_1050951	Not Available	926	Open in IMG/M
3300027874\|Ga0209465_10511884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	599	Open in IMG/M
3300027874\|Ga0209465_10686245	Not Available	503	Open in IMG/M
3300027884\|Ga0209275_10228907	Not Available	1014	Open in IMG/M
3300028380\|Ga0268265_10197130	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1743	Open in IMG/M
3300029957\|Ga0265324_10158366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	769	Open in IMG/M
3300030058\|Ga0302179_10023766	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2925	Open in IMG/M
3300030760\|Ga0265762_1156809	Not Available	546	Open in IMG/M
3300031525\|Ga0302326_12802354	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300031708\|Ga0310686_113880916	Not Available	509	Open in IMG/M
3300031718\|Ga0307474_10114186	All Organisms → cellular organisms → Bacteria	2025	Open in IMG/M
3300031720\|Ga0307469_10944635	All Organisms → cellular organisms → Bacteria → Acidobacteria	801	Open in IMG/M
3300031720\|Ga0307469_12366896	Not Available	518	Open in IMG/M
3300031902\|Ga0302322_103436950	Not Available	542	Open in IMG/M
3300031918\|Ga0311367_11142677	All Organisms → cellular organisms → Bacteria → Acidobacteria	775	Open in IMG/M
3300031941\|Ga0310912_10503720	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
3300031962\|Ga0307479_11159480	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300032035\|Ga0310911_10599898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300032180\|Ga0307471_100391024	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1515	Open in IMG/M
3300032180\|Ga0307471_103479236	Not Available	557	Open in IMG/M
3300033158\|Ga0335077_11409673	Not Available	671	Open in IMG/M
3300033887\|Ga0334790_006612	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6867	Open in IMG/M
3300034090\|Ga0326723_0396099	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300034125\|Ga0370484_0030220	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.75%
Aquatic	Environmental → Aquatic	31.37%
Plants	Host-Associated → Plants	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.86%
Freshwater	Environmental → Aquatic → Freshwater	29.41%
Peat	Environmental → Terrestrial → Peat	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Sediment	Environmental → Aquatic → Sediment	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	30.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.41%
Loam	Environmental → Terrestrial → Soil → Loam	21.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	19.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	10.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.82%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001170	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009634	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016730	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025444	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300026928	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes)	Environmental	Open in IMG/M
3300027535	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300029957	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG	Host-Associated	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12704J13340_10093923	3300001170	Forest Soil	AKIGVQTQTSEKLPPAAGIILLVGGVVALALGARK*
JGI12635J15846_106221472	3300001593	Forest Soil	VPIPHSEKHGVKFGDAKISVETENSEKLPPAVGIVLLAGGIVALVLGLRKTSG*
JGIcombinedJ26739_1006141673	3300002245	Forest Soil	EDHSVKIGGAKLGVETEHTEKLPPAVGGILLVGGVLALVVGSRKA*
JGIcombinedJ26739_1009544072	3300002245	Forest Soil	GDAKIGVQTQHSEKLPPAVGIILLAGGVLALVVGVRK*
JGIcombinedJ51221_104218161	3300003505	Forest Soil	HGVKMGDTKIGEQTENSEKLPPAVDAVLLAGDVLVLVLGSRKT*
JGIcombinedJ51221_104828312	3300003505	Forest Soil	KIGDAKIGVQTEHSEKLPAGVGIVLLAGGVLALVLGSRKS*
Ga0058899_121724091	3300004631	Forest Soil	PVPHREHHGVKIGDAKIGIETENSDKLPPAAGVVLLAGGVLALVIGLRKT*
Ga0066687_101021582	3300005454	Soil	LRVGDAKVTVQTENREKLPPAVGIILIGGGVLSLVLGLRKN*
Ga0070732_105492811	3300005542	Surface Soil	PVPHREDHSVKIGDAKIGVQTENNEKLPPAVGIVLVAAGAMVLVFGARKS*
Ga0066691_107683232	3300005586	Soil	IGDAKIGVQTESSEKLPPVVGIVLLTGGVLALVLGARER*
Ga0070762_102188892	3300005602	Soil	KIGDTKIGVQTQSSEKLPPAVGIVLLAGGVLALILGSRKT*
Ga0066905_1001457043	3300005713	Tropical Forest Soil	HGVKIDNTKIGIQTETREKVPPAVGIVLLAGGAVALVLGSRKT*
Ga0066903_1019218841	3300005764	Tropical Forest Soil	KIGDTKIGVQTESSEKLPPAVGIVLLSGGVLALVLGARKT*
Ga0070766_103187882	3300005921	Soil	HGVKIGDTKIGVQTQSSEKLPPAVGIVLLAGGVLALILGSRKT*
Ga0070766_106370391	3300005921	Soil	HRESHGVKIGDAKIGVQTEHDEKLPPAVGVILLVGGVSALAAGARQA*
Ga0075026_1009839342	3300006057	Watersheds	HGVKIGDTKIGVQTEHNEKLPPAVGGILLAGGVLALVVGVRKT*
Ga0075017_1008133191	3300006059	Watersheds	RENHGIQIGDAKIGVQTQSSEKLPPAVGIVLLAGGVLALVVGLRKT*
Ga0066653_102000181	3300006791	Soil	KVGDAKFTVQTENREKLPPAVGIILIGGGVLSLVFGLRKN*
Ga0099795_106275222	3300007788	Vadose Zone Soil	QIGDAKIGVQTENSEKLPPAVGIVLLAGGILTLIIGARSA*
Ga0116114_10355181	3300009630	Peatland	ENHGVKIGDTKIGVQTQSSEKLPPAVGIVLVAGGVLALVLGSRKT*
Ga0116115_11833861	3300009631	Peatland	PHSENHGVKIGDTKIGVQTQSSEKLPPAVGIILLAGGVLALVLGSRKS*
Ga0116124_11213112	3300009634	Peatland	VKIGDTKIGVQTQSSEKLPPAVGIVLLAGGALALVLGSRKS*
Ga0116122_10768491	3300009639	Peatland	IGVQTQSSEKLPPAVGIVLLAGGALALVLGSRKS*
Ga0116134_12800871	3300009764	Peatland	HSVKIGDTKIGVQTQSSEKLPPAVGIVLLAGGALALVLGSRKS*
Ga0116219_106305782	3300009824	Peatlands Soil	NIGDAKIGVQTEHSEKLPPAVGIVLVAGGVLALVLGSRKA*
Ga0074044_105596052	3300010343	Bog Forest Soil	ENHSVKIGDTKIGVQTQSREKLPPAVGIVLLAGGVLALVLGSRKS*
Ga0136449_1002819555	3300010379	Peatlands Soil	GDAKIGVQTEHSEKLPPAVGIVLVAGGVLALVLGSRKA*
Ga0136449_1026168111	3300010379	Peatlands Soil	RESHGVRIGDANFSVQTEHSEKLPTAVGIVLVAGGVLALVLGSRKA*
Ga0137399_114243611	3300012203	Vadose Zone Soil	PHHENHGVQIGDAKIGVQTETSEKLPPAVGIVLLAGGILTLVLGARAS*
Ga0126369_104992881	3300012971	Tropical Forest Soil	KVGDAKIGIQTETSEKLPPAVGISLLSGGILVLLVGTRRS*
Ga0157372_103285773	3300013307	Corn Rhizosphere	MPHRDDHSVSIGDAKFSLQTESREKLPPAVGIVLIGGGVLSLVLGLRKN*
Ga0181533_10592231	3300014152	Bog	HGVKIGDTKIGVQTQSSEKLPPAVGIVLLAGGVLALVLGSRKT*
Ga0181518_101728152	3300014156	Bog	IGDTKIGVQTQSREKLPPAVGIVLLAGGVLALVLGGRKT*
Ga0181521_100504805	3300014158	Bog	IGVQTQSSEKLPPAVGIVLVAGGVLALVLGIRKT*
Ga0181538_101246011	3300014162	Bog	IGVQTQSSEKLPPAVGIVLVAGGVLALVLGSRKT*
Ga0181523_103606421	3300014165	Bog	DTKIGVQTQSSEKLPPAVGIVLVAGGVLALVLGSRKT*
Ga0181523_106390401	3300014165	Bog	SETHSVKIGDTKIGVQTQSREKLPPAVGIVLLAGGVLALVLGSRKS*
Ga0181535_107876492	3300014199	Bog	VKIGDTKIGVQTQSREKLPPAVGIVLVAGGILALVLGIRKT*
Ga0181536_103584131	3300014638	Bog	ENHTVRIGDTKIGVQTQSREKLPPAVGIVLLAGGVLALVLGGRKT*
Ga0181525_101179831	3300014654	Bog	IGVQTESSQKLPPAVGIVLLVGGVVALGLGARKT*
Ga0132258_115596551	3300015371	Arabidopsis Rhizosphere	PRRESHGVKINDTKIGIQTETREKLPPAVGIVLLAGGALAVVLGARKT*
Ga0182037_115206551	3300016404	Soil	VKIGDAKIGVQTEHSEKLPSGVGIVLLAGGVLALVLGSRKS
Ga0181515_10762536	3300016730	Peatland	VPHSENHSVKFGDTKIGVQTQSSEKLPPAVGIVLVAGGVLALVLGSRKT
Ga0187803_104832411	3300017934	Freshwater Sediment	GVKIGDAKISVQTESDDKLPPAAGIVLLAGGVVALILGLRKT
Ga0187879_106157292	3300017946	Peatland	VRMGDTRIGVRTEHSETLPPAAGIVLLAGGVVALILGLRKP
Ga0187817_109918991	3300017955	Freshwater Sediment	SVKIGDAKFDLQTETSEKLPPAVGIVLLAAGVVVVVAGSRKS
Ga0187804_104484911	3300018006	Freshwater Sediment	VPHSENHSVKIGDTKIGVQTQHSEKLPPAVGIVLEAGGVLALVLGSRKT
Ga0187884_100399881	3300018009	Peatland	ENHGVKIGDTKIGVQTQSSEKLPPAVGIILLAGGVLALVLGSRKS
Ga0187810_104603881	3300018012	Freshwater Sediment	KFSVQTESSQLLPSAVGVILVGGGVVALVLGLRKS
Ga0187874_100744341	3300018019	Peatland	KIGVQTQSSEKLPPAVGIVLLAGGALALVLGSRKS
Ga0187861_102445821	3300018020	Peatland	KIGVQTQSSEKLPPAVGIVLLAGGVLALVLGSRKS
Ga0187855_105305221	3300018038	Peatland	GDTKIGVQTQSSEKLPPAVGIVLLAGGVFALVLGSRKT
Ga0187871_101361761	3300018042	Peatland	VKIGDTKIGVQTQSSERLPPAVGIVLLAGGVFSLIAGARKS
Ga0187887_106275323	3300018043	Peatland	TKIGVQTQHSEKLPPAVGVVLLAGGVVALAIGARKP
Ga0187858_102906711	3300018057	Peatland	TKIGVQTQSSEKLPPAVGIVLVAGGVLALVLGSRKT
Ga0187858_105179941	3300018057	Peatland	DTKIGVQTQSSEKLPPAVGIVLLAGGVLALVLGSRKT
Ga0187769_109406502	3300018086	Tropical Peatland	GDAKFSVQTETSEKLPPGVGIVLVAAGVVVVAVAARKA
Ga0187852_10269751	3300019082	Peatland	IGDTKIGVQTQSSEKLPPAVGIVLLAGGVLALVLGSRKT
Ga0179592_104844002	3300020199	Vadose Zone Soil	LPHHETHGVQIGDAKIGVQTETSEKLPPAVGIVLLAGGVLTLVLGARA
Ga0210383_114767601	3300021407	Soil	DRTYRKGVETEHTEKLPPAVGGILLVGGVLALVVGSRKA
Ga0210384_113614551	3300021432	Soil	LVVPVPQREDHSVKIGDAKIGVQTEHSEKLPAGVGIVLLAGGVLALVLGSRKS
Ga0210402_105072142	3300021478	Soil	PVPQSENHGLKIGDAKISVQTESSQKLPPAVGIVLVAGGVVALILGLRKT
Ga0210402_109044121	3300021478	Soil	AKISVQTETSEKLPPAAGIVLLAGGVLALIVGLRKA
Ga0210409_102433931	3300021559	Soil	SHSVKIGDTRIGVQTQHSEKLPAGVGIVLLAGGVLALVLGSRRS
Ga0210409_102582343	3300021559	Soil	ESHDLKIGDTKIGVQTESREKLPPAVGVVLVAGGVLALVLGSRKS
Ga0210409_109480411	3300021559	Soil	HRENHGLKIGDAKISVETESSDKLPPAAGIVLLAGGVVALVLGLRKT
Ga0126371_128908522	3300021560	Tropical Forest Soil	LVVPVPQRETHSVKIGDTRIGVQTQHSEKLPAGVGIVLVAGGVLALVLGSRTS
Ga0208189_10142171	3300025444	Peatland	ENHGVKIGDTKIGVQTQSSEKLPPAVGIVLVAGGVLALVLGSRKT
Ga0207680_101111363	3300025903	Switchgrass Rhizosphere	HGVKVGDAKIGIQTESKEKLPPAVGIVLVAGGVIALVAGSRKG
Ga0207699_102887364	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LALTVPVPQREDHSVKIGDAKIGVQTQSSQKLPPVVGIILIAGGVLALVAGSRKS
Ga0207695_111130052	3300025913	Corn Rhizosphere	PMPHRDDHSVSIGDAKFTLQTESREKLPPAVGIVLIGGGVLSLVLGLRKN
Ga0207663_100922741	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DAKFSVQTETSEKLPPAVGIILIGGGVVALILGLRKA
Ga0207660_102776561	3300025917	Corn Rhizosphere	DAKIGIQTESKEKLPPAVGIVLVAGGVIALVAGSRKG
Ga0209839_101418323	3300026294	Soil	VPHSENHGVKIGDAKIGVQTEHSEKMPPAVGIVLLAGGVLALVFGSRKT
Ga0207779_10406321	3300026928	Tropical Forest Soil	GIKFGDAKISVRTESSEKLPPAAGIVLLAGGVVALILGLRKT
Ga0209734_11223921	3300027535	Forest Soil	GDAKISVETQSSDKLPPAVGIVLIAGGVVALVLGLRKA
Ga0209116_11305651	3300027590	Forest Soil	TKIGVQTQSSEKLPPAVGIVLLAGGVLALILGSRKT
Ga0208324_10385752	3300027604	Peatlands Soil	SENHSVKIGDTKIGVQTQSREKLPPAVGIVLLAGGVLALVLGSRKS
Ga0209799_10509511	3300027654	Tropical Forest Soil	PIPHRESRGVKMDDTKISIQRETREKLPPAVGIVLLAGSAVVLVLGSRKP
Ga0209465_105118842	3300027874	Tropical Forest Soil	HGIKVGDAKFSIQTEDSEKLPSSVGIILIGGGVVALILGLRKA
Ga0209465_106862451	3300027874	Tropical Forest Soil	TRIGVQTQHSEKLPAGVGIVLVAGGALALVLGSRTS
Ga0209275_102289071	3300027884	Soil	KIGDTKIGVQTQSSEKLPPAVGIVLLAGGVLALILGSRKT
Ga0268265_101971301	3300028380	Switchgrass Rhizosphere	HSENHGVKVGDAKIGIQTESKEKLPPAVGIVLVAGGVIALVAGSRKG
Ga0265324_101583662	3300029957	Rhizosphere	VKIGNAKLGVQTESSEKLPPAVGIVLLAGGVLALVMGSRKT
Ga0302179_100237666	3300030058	Palsa	VPVPQTENHGVKIGDTKIGVQTQHSEKLPPGVGAVLLAGGVIALVLGARKA
Ga0265762_11568091	3300030760	Soil	GDAKIGVQTQTSEKLPPAAGIILLVGGVVALALGARR
Ga0302326_128023541	3300031525	Palsa	GVKIGDTKIGVQTQHSEKLPPAVGVVLLVGGVVALALGVRKT
Ga0310686_1138809162	3300031708	Soil	VPHSENHGVKIGDTKIGVQTQSSEKLPSAVGIVLLVGGVVAVALGVRKP
Ga0307474_101141863	3300031718	Hardwood Forest Soil	ENHGVKMGDTKIGEQTENSEKLPPAVDAVLLAGDVLVLVLGSRKT
Ga0307469_109446352	3300031720	Hardwood Forest Soil	AFIVPIPHREQHGVQIGDAKIGVQTESSEKLPPVVGIVLLTGGVLALVLGARKS
Ga0307469_123668961	3300031720	Hardwood Forest Soil	VKIGDTKIGVQTENSEKHPPAVGAVLLAVGVLALVLGS
Ga0302322_1034369502	3300031902	Fen	HSEDHGVKIGDAKIGVTTQSSQKLPPAVGITLLVGGVLVLAVGSRNS
Ga0311367_111426773	3300031918	Fen	VVPIPHSEDHGVKVGDAKIGITTESSKKVPPAVGMTLVAAGVLVLFAGSRKT
Ga0310912_105037201	3300031941	Soil	KVGDAKFSIQTEDSEKLPSTVGIILIGGGVVALILGLRRG
Ga0307479_111594801	3300031962	Hardwood Forest Soil	KVGDAKFSIQTEDSEKLPPAVGIILIGGGVVALILGLRKA
Ga0310911_105998982	3300032035	Soil	IKVGDAKFSIQTEDSEKLPSTVGIILIGGGVVALILGLRRG
Ga0307471_1003910241	3300032180	Hardwood Forest Soil	ALVVPVPQRESHSVKIGDTRIGVQTQHSEKLPAGVGIVLLAGGVLALVLGSRRS
Ga0307471_1034792361	3300032180	Hardwood Forest Soil	VVPLPHRESHDLKIGDTKIGVQTESREKLPPAVGVVLVAGGVLALVLGSRKS
Ga0335077_114096732	3300033158	Soil	ERGVSIGDARFGVQIERREKLPPAVGVVLVAAGAVALLIGGRK
Ga0334790_006612_44_193	3300033887	Soil	MPHHEHHGMRIGDARVGVETEHHDMLPPAAGVVLLAGGVLALVLGLRKS
Ga0326723_0396099_510_626	3300034090	Peat Soil	GDAKIGVQTESSEKLPPAVGIVLLTSGVLALVVGSRKA
Ga0370484_0030220_2_172	3300034125	Untreated Peat Soil	LLSFLIPIPHRENHGLKIGDTKIGVQTESSEKLPPAVGIVLLAGGALALVLGSRKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100865

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences