Metagenome / Metatranscriptome Family F100864

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100864
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	37 residues
Representative Sequence	MPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Number of Associated Samples	60
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.43 %
% of genes near scaffold ends (potentially truncated)	38.24 %
% of genes from short scaffolds (< 2000 bps)	85.29 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.686 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (41.176 % of family members)
Environment Ontology (ENVO)	Unclassified (40.196 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.941 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.51% β-sheet: 0.00% Coil/Unstructured: 63.49%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01555	N6_N4_Mtase	1.96
PF00072	Response_reg	1.96
PF01370	Epimerase	1.96
PF06182	ABC2_membrane_6	1.96
PF00291	PALP	1.96
PF01066	CDP-OH_P_transf	1.96
PF00701	DHDPS	1.96
PF09335	SNARE_assoc	1.96
PF02371	Transposase_20	1.96
PF07635	PSCyt1	1.96
PF01702	TGT	0.98
PF07394	DUF1501	0.98
PF13517	FG-GAP_3	0.98
PF00742	Homoserine_dh	0.98
PF00593	TonB_dep_Rec	0.98
PF09723	Zn-ribbon_8	0.98
PF01799	Fer2_2	0.98
PF13508	Acetyltransf_7	0.98
PF05198	IF3_N	0.98
PF07638	Sigma70_ECF	0.98
PF01509	TruB_N	0.98
PF12704	MacB_PCD	0.98
PF13411	MerR_1	0.98
PF00171	Aldedh	0.98
PF14236	DUF4338	0.98
PF13378	MR_MLE_C	0.98
PF01797	Y1_Tnp	0.98
PF13365	Trypsin_2	0.98
PF05685	Uma2	0.98
PF03129	HGTP_anticodon	0.98
PF13720	Acetyltransf_11	0.98
PF10110	GPDPase_memb	0.98
PF16198	TruB_C_2	0.98
PF00196	GerE	0.98
PF16177	ACAS_N	0.98
PF06325	PrmA	0.98
PF00293	NUDIX	0.98
PF01168	Ala_racemase_N	0.98
PF00034	Cytochrom_C	0.98
PF01634	HisG	0.98
PF13472	Lipase_GDSL_2	0.98
PF00892	EamA	0.98
PF00535	Glycos_transf_2	0.98
PF04461	DUF520	0.98
PF01609	DDE_Tnp_1	0.98
PF05698	Trigger_C	0.98
PF13360	PQQ_2	0.98
PF01842	ACT	0.98
PF02350	Epimerase_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	3.92
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	1.96
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	1.96
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	1.96
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	1.96
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	1.96
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	1.96
COG3694	ABC-type uncharacterized transport system, permease component	General function prediction only [R]	1.96
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.96
COG0863	DNA modification methylase	Replication, recombination and repair [L]	1.96
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	1.96
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	1.96
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.98
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.98
COG2264	Ribosomal protein L11 methylase PrmA	Translation, ribosomal structure and biogenesis [J]	0.98
COG2890	Methylase of polypeptide chain release factors	Translation, ribosomal structure and biogenesis [J]	0.98
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.98
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.98
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.98
COG3897	Protein N-terminal and lysine N-methylase, NNT1/EFM7 family	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.98
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.98
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.98
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.98
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.98
COG1666	Cyclic di-GMP-binding protein YajQ, UPF0234 family	Signal transduction mechanisms [T]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG1549	Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains	Translation, ribosomal structure and biogenesis [J]	0.98
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.98
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0544	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG0460	Homoserine dehydrogenase	Amino acid transport and metabolism [E]	0.98
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.98
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0343	Queuine/archaeosine tRNA-ribosyltransferase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0290	Translation initiation factor IF-3	Translation, ribosomal structure and biogenesis [J]	0.98
COG0130	tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA	Translation, ribosomal structure and biogenesis [J]	0.98
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0040	ATP phosphoribosyltransferase	Amino acid transport and metabolism [E]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	39.22 %
Unclassified	root	N/A	34.31 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	35.29 %
Unclassified	root	N/A	34.31 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.98 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	19.61 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	6.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	6.86 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	3.92 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	1.96 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3.92 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.98 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.98 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	19.61 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3.92 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.98 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.98 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005444\|Ga0070694_101688027	Not Available	539	Open in IMG/M
3300005451\|Ga0066681_10680893	Not Available	627	Open in IMG/M
3300005466\|Ga0070685_11030470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	619	Open in IMG/M
3300005540\|Ga0066697_10640979	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	586	Open in IMG/M
3300005553\|Ga0066695_10243785	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300005553\|Ga0066695_10288001	Not Available	1037	Open in IMG/M
3300005556\|Ga0066707_10925520	Not Available	534	Open in IMG/M
3300005557\|Ga0066704_10769402	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300005558\|Ga0066698_10748764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300005598\|Ga0066706_10437648	Not Available	1042	Open in IMG/M
3300006034\|Ga0066656_10338383	Not Available	972	Open in IMG/M
3300006791\|Ga0066653_10255710	Not Available	892	Open in IMG/M
3300006791\|Ga0066653_10764667	Not Available	506	Open in IMG/M
3300006796\|Ga0066665_11478837	Not Available	529	Open in IMG/M
3300006797\|Ga0066659_10175117	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1548	Open in IMG/M
3300006797\|Ga0066659_10535066	Not Available	944	Open in IMG/M
3300007265\|Ga0099794_10281250	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300007788\|Ga0099795_10495038	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300009012\|Ga0066710_101731015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	949	Open in IMG/M
3300009094\|Ga0111539_10094964	All Organisms → cellular organisms → Bacteria	3503	Open in IMG/M
3300009094\|Ga0111539_10218544	All Organisms → cellular organisms → Bacteria	2220	Open in IMG/M
3300009094\|Ga0111539_10894033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	1033	Open in IMG/M
3300009100\|Ga0075418_12237061	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	596	Open in IMG/M
3300009137\|Ga0066709_100162141	All Organisms → cellular organisms → Bacteria → Proteobacteria	2879	Open in IMG/M
3300009137\|Ga0066709_100837726	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1336	Open in IMG/M
3300009156\|Ga0111538_10322037	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1957	Open in IMG/M
3300010322\|Ga0134084_10258011	Not Available	632	Open in IMG/M
3300010322\|Ga0134084_10400133	Not Available	535	Open in IMG/M
3300010323\|Ga0134086_10297703	Not Available	626	Open in IMG/M
3300010329\|Ga0134111_10467513	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300010329\|Ga0134111_10517965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	525	Open in IMG/M
3300010364\|Ga0134066_10034068	Not Available	1221	Open in IMG/M
3300010364\|Ga0134066_10160629	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300010399\|Ga0134127_11051666	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	876	Open in IMG/M
3300011423\|Ga0137436_1104684	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	748	Open in IMG/M
3300012189\|Ga0137388_10143669	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300012199\|Ga0137383_10186200	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300012199\|Ga0137383_10371017	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1048	Open in IMG/M
3300012199\|Ga0137383_10634107	All Organisms → cellular organisms → Bacteria → PVC group	781	Open in IMG/M
3300012199\|Ga0137383_10684588	Not Available	749	Open in IMG/M
3300012201\|Ga0137365_10096862	All Organisms → cellular organisms → Bacteria	2220	Open in IMG/M
3300012201\|Ga0137365_10135555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1851	Open in IMG/M
3300012201\|Ga0137365_10172406	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1621	Open in IMG/M
3300012201\|Ga0137365_10488305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	905	Open in IMG/M
3300012201\|Ga0137365_10618598	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	793	Open in IMG/M
3300012204\|Ga0137374_10914340	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300012204\|Ga0137374_11274945	Not Available	509	Open in IMG/M
3300012206\|Ga0137380_10227838	All Organisms → cellular organisms → Bacteria	1684	Open in IMG/M
3300012206\|Ga0137380_11033890	Not Available	701	Open in IMG/M
3300012207\|Ga0137381_10631742	All Organisms → cellular organisms → Bacteria → PVC group	932	Open in IMG/M
3300012208\|Ga0137376_10237174	Not Available	1581	Open in IMG/M
3300012208\|Ga0137376_10441109	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1130	Open in IMG/M
3300012209\|Ga0137379_10021812	All Organisms → cellular organisms → Bacteria	6154	Open in IMG/M
3300012209\|Ga0137379_10035083	All Organisms → cellular organisms → Bacteria	4836	Open in IMG/M
3300012209\|Ga0137379_10063186	All Organisms → cellular organisms → Bacteria	3564	Open in IMG/M
3300012209\|Ga0137379_10064000	All Organisms → cellular organisms → Bacteria	3540	Open in IMG/M
3300012209\|Ga0137379_10090297	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2947	Open in IMG/M
3300012209\|Ga0137379_10228229	All Organisms → cellular organisms → Bacteria	1776	Open in IMG/M
3300012209\|Ga0137379_10253918	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300012209\|Ga0137379_11226887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	657	Open in IMG/M
3300012209\|Ga0137379_11686377	Not Available	531	Open in IMG/M
3300012210\|Ga0137378_11217821	Not Available	669	Open in IMG/M
3300012350\|Ga0137372_10466348	Not Available	945	Open in IMG/M
3300012351\|Ga0137386_10090213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2156	Open in IMG/M
3300012351\|Ga0137386_11113434	Not Available	557	Open in IMG/M
3300012353\|Ga0137367_11103027	Not Available	536	Open in IMG/M
3300012354\|Ga0137366_10089469	All Organisms → cellular organisms → Bacteria	2338	Open in IMG/M
3300012354\|Ga0137366_10753364	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	692	Open in IMG/M
3300012357\|Ga0137384_10570500	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	925	Open in IMG/M
3300012357\|Ga0137384_11181678	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300012358\|Ga0137368_10123744	All Organisms → cellular organisms → Bacteria	1955	Open in IMG/M
3300012358\|Ga0137368_10353635	Not Available	976	Open in IMG/M
3300012358\|Ga0137368_10495448	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300012358\|Ga0137368_10862584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	555	Open in IMG/M
3300012532\|Ga0137373_10088708	All Organisms → cellular organisms → Bacteria	2734	Open in IMG/M
3300014154\|Ga0134075_10365459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	634	Open in IMG/M
3300014157\|Ga0134078_10552987	Not Available	544	Open in IMG/M
3300014157\|Ga0134078_10565361	Not Available	539	Open in IMG/M
3300017656\|Ga0134112_10386161	Not Available	576	Open in IMG/M
3300018061\|Ga0184619_10219200	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300018071\|Ga0184618_10191733	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	851	Open in IMG/M
3300018071\|Ga0184618_10208062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	819	Open in IMG/M
3300018078\|Ga0184612_10455731	Not Available	635	Open in IMG/M
3300018431\|Ga0066655_11112829	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	553	Open in IMG/M
3300018469\|Ga0190270_11993253	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	639	Open in IMG/M
3300018482\|Ga0066669_11611747	Not Available	593	Open in IMG/M
3300018482\|Ga0066669_12128355	Not Available	530	Open in IMG/M
3300021080\|Ga0210382_10011309	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3039	Open in IMG/M
3300021080\|Ga0210382_10050095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1641	Open in IMG/M
3300021080\|Ga0210382_10464150	Not Available	561	Open in IMG/M
3300022756\|Ga0222622_11134826	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	575	Open in IMG/M
3300025936\|Ga0207670_10023768	All Organisms → cellular organisms → Bacteria	3820	Open in IMG/M
3300025936\|Ga0207670_10130166	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300025936\|Ga0207670_10254262	All Organisms → cellular organisms → Bacteria → PVC group	1359	Open in IMG/M
3300025936\|Ga0207670_11662068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300026298\|Ga0209236_1208016	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	719	Open in IMG/M
3300026324\|Ga0209470_1298503	Not Available	599	Open in IMG/M
3300026530\|Ga0209807_1112709	Not Available	1143	Open in IMG/M
3300026530\|Ga0209807_1210483	Not Available	674	Open in IMG/M
3300026537\|Ga0209157_1234250	Not Available	745	Open in IMG/M
3300031424\|Ga0308179_1005152	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1115	Open in IMG/M
3300034681\|Ga0370546_020602	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	872	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.10%
Host-Associated	Host-Associated	4.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.27%
Aquatic	Environmental → Aquatic	8.82%
Plants	Host-Associated → Plants	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.27%
Sediment	Environmental → Aquatic → Sediment	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Freshwater	Environmental → Aquatic → Freshwater	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	24.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	41.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	10.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070694_1016880272	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GNGRGAMPFLMSFALEPEIVTLAWTDNASVQFPLNIYATKG*
Ga0066681_106808932	3300005451	Soil	MPFLMSFALEPEIVTVAWIDNASVQFPLNIYATKGLTVLSQWN*
Ga0070685_110304702	3300005466	Switchgrass Rhizosphere	MPFIMSFAREPAIVTLAWSDSVSVAFPLNIDATKGLTRFEK
Ga0066697_106409791	3300005540	Soil	MPFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Ga0066695_102437852	3300005553	Soil	MSFVLEPEIVTLAWIDNASVQFPLNIYATKEHSKRGTATTSI*
Ga0066695_102880011	3300005553	Soil	MPFLMSFALEHEIVRLAWIDNAAVQFPLNIYATKGF
Ga0066707_109255202	3300005556	Soil	MPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA*
Ga0066704_107694022	3300005557	Soil	MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGL
Ga0066698_107487642	3300005558	Soil	MPFLMSLALEPEIVTLVDNAFVQFPLNIYATKGSTHLYLL*
Ga0066706_104376482	3300005598	Soil	MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG*
Ga0066656_103383832	3300006034	Soil	NGRGAMPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG*
Ga0066653_102557101	3300006791	Soil	MSFALEPEIVTLAWIDNASVHFPLNICATKGFKNGSR*
Ga0066653_107646672	3300006791	Soil	MPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG*
Ga0066665_114788372	3300006796	Soil	MPFLMSFALEPEIVALAWIDNAFVQFPLNSYATKGLPQ
Ga0066659_101751172	3300006797	Soil	MPFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG*
Ga0066659_105350662	3300006797	Soil	RGAMPFLMSFALEPEIVTLAWIDNVPVQFPLNIYATKG*
Ga0099794_102812502	3300007265	Vadose Zone Soil	MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGFN*
Ga0099795_104950381	3300007788	Vadose Zone Soil	MSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0066710_1017310152	3300009012	Grasslands Soil	MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKG
Ga0111539_100949642	3300009094	Populus Rhizosphere	MPFLMSFALEPEFMTLAWIDNASVQFPLNIYATKG*
Ga0111539_102185443	3300009094	Populus Rhizosphere	MPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV*
Ga0111539_108940332	3300009094	Populus Rhizosphere	MPFLMIVALELEIMTFAWIDNASVQFPLNIYPTKG*
Ga0075418_122370612	3300009100	Populus Rhizosphere	AMPFLMSFALEPEIVTLAWIHNASVQFPLNIYATKG*
Ga0066709_1001621411	3300009137	Grasslands Soil	MPFLMSFALEPEIVTFAWIDNASVQFPLNIYATNG*
Ga0066709_1008377263	3300009137	Grasslands Soil	MLFLMSFALEPEIVTVAWIDNASVPFPLNVYATKG*
Ga0111538_103220371	3300009156	Populus Rhizosphere	MPFLMSFAPEPEIVTFAWIDNASVQFPLNIYATKG*
Ga0134084_102580112	3300010322	Grasslands Soil	MPFLMSFALEPEMVTLAWIDNDSVQFPLNIYATKGVIQIASA*
Ga0134084_104001331	3300010322	Grasslands Soil	MSFLMSFALEPEIVTLAWIDNAPVQFPLNIYATKG*
Ga0134086_102977031	3300010323	Grasslands Soil	MSFLMSFAMEPEIVPLAWIDNASVQFPLNIYATKG
Ga0134111_104675131	3300010329	Grasslands Soil	MPFLMSFALEPEIVTLAWIDNISVQFPLNIYPTKGRARS
Ga0134111_105179651	3300010329	Grasslands Soil	MPFLMSFALEPEIVTLTWIDNASVQISLNIYATEE*
Ga0134066_100340681	3300010364	Grasslands Soil	MPFLMSFALEPEILTLAWIDNASVQFPLNIYATKE*
Ga0134066_101606291	3300010364	Grasslands Soil	MPFLMIVALELEIMTFAWIDNASVQFPLNIYATKG*
Ga0134127_110516663	3300010399	Terrestrial Soil	MPSLTSLALEPEIMTLAWIDNASVQFPLNIYATLGF
Ga0137436_11046842	3300011423	Soil	MPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKG*
Ga0137388_101436693	3300012189	Vadose Zone Soil	MPFLMSFALEPEIVTLAKIDNVSLQFPLNLYATKGCT*
Ga0137383_101862001	3300012199	Vadose Zone Soil	GRGAMSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137383_103710172	3300012199	Vadose Zone Soil	MPFLMSFALEPEIVTVAWIDNASVQFPLNIYAAKGLTYG*
Ga0137383_106341071	3300012199	Vadose Zone Soil	MPFLMSFALGHEIVMVAWIDNASVQFPLNIYATKG*
Ga0137383_106845881	3300012199	Vadose Zone Soil	MPFLMSFALEPEIVALAWIDNGSVQFSLNISATKG*
Ga0137365_100968622	3300012201	Vadose Zone Soil	MPFLMSFVLEPEIVTLAWIDNASVQFPLNIYSTSSGKA*
Ga0137365_101355553	3300012201	Vadose Zone Soil	MPFLMSFVLEPEIVTLAWIDNASVQFLLNIYATKE*
Ga0137365_101724062	3300012201	Vadose Zone Soil	MPFLVSFALEPEIVTMAWIENASVHFPLNIYATKG*
Ga0137365_104883052	3300012201	Vadose Zone Soil	MSFALEPEIVTLAWIDNASVQFPLNIYATLGFTFQGFN*
Ga0137365_106185981	3300012201	Vadose Zone Soil	MPFLMSLALEPEIMTLAWIDNASVQFPLNIYATKG*
Ga0137374_109143401	3300012204	Vadose Zone Soil	NGRGEMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG*
Ga0137374_112749452	3300012204	Vadose Zone Soil	MSFLMSFALEHEIVTLAWADNASVQFPLNIYATKRLIGAIFGI
Ga0137380_102278382	3300012206	Vadose Zone Soil	MPFLMSFALEHEIVTLAWIDNASVQFPLNIYPTKGFN*
Ga0137380_110338902	3300012206	Vadose Zone Soil	PFLMSFAMEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137381_106317422	3300012207	Vadose Zone Soil	MPFAMSFALEHEILTLTWIDNASVQISLNIYATEE*
Ga0137376_102371742	3300012208	Vadose Zone Soil	MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG*
Ga0137376_104411091	3300012208	Vadose Zone Soil	MPFLMSFALEHEIVTLAWIDNASVQFPLNIYANEG*
Ga0137379_100218122	3300012209	Vadose Zone Soil	MSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKGLIPR*
Ga0137379_100350834	3300012209	Vadose Zone Soil	MPFSMSFALEHEIVTLAWIDNASVQFPLNIYATKG*
Ga0137379_100631861	3300012209	Vadose Zone Soil	MPFLMSFALEHEIVTFAWIDNAFVQFPLNFYATKG
Ga0137379_100640005	3300012209	Vadose Zone Soil	MPFLMSFALEHEIVTFALIDNASVQFPLNIYATKG*
Ga0137379_100902973	3300012209	Vadose Zone Soil	MRFLMSFALEPEIVALAWIENASVQFPFNIYATKG*
Ga0137379_102282292	3300012209	Vadose Zone Soil	MSLLMSFAPEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI*
Ga0137379_102539181	3300012209	Vadose Zone Soil	GNGRGAMPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG*
Ga0137379_112268871	3300012209	Vadose Zone Soil	RGAMPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKG*
Ga0137379_116863771	3300012209	Vadose Zone Soil	GRGEMPFLKSFALEHEIVTFAWIDNAFVQFPLNFYATKG*
Ga0137378_112178211	3300012210	Vadose Zone Soil	AMSSLMSFALEPEIVTLAWIDNASVQFPLNIYATKG*
Ga0137372_104663481	3300012350	Vadose Zone Soil	MPFLMSFALEPEIVTLAWIDNVSVQFPLNVYATKG*
Ga0137386_100902132	3300012351	Vadose Zone Soil	MPLLMSFALQYESVTFAWIDNASVQFPLNIYATKG*
Ga0137386_111134341	3300012351	Vadose Zone Soil	MSFLMSFALEPEIVTLAWIDNGSVQFALNIYATKGFS
Ga0137367_111030273	3300012353	Vadose Zone Soil	MPFLMSFALEHEIVTLAWVDNASVQFPLNIYATKGLNIPRFVG*
Ga0137366_100894692	3300012354	Vadose Zone Soil	MSFALEPEIVTLTLIDNASVQFPLNIYSTSSGKA*
Ga0137366_107533641	3300012354	Vadose Zone Soil	GAMPFVMSFALEHEIVTLAWIDNASVEFPLNNYATKG*
Ga0137384_105705002	3300012357	Vadose Zone Soil	LMSFALEHEIVTFAWIDNASVQFPLNIYATKVFRLPF*
Ga0137384_111816782	3300012357	Vadose Zone Soil	MPFLMSFALEHEIVTFAWIDNAPVQFTLNIYATKG*
Ga0137368_101237444	3300012358	Vadose Zone Soil	EMPFLMSFVLEHEIITFAWIANAFVQFPLNFYATKG*
Ga0137368_103536352	3300012358	Vadose Zone Soil	MPFLMSFALEHEFVTFAWIDNDSVHFPLNFHTTKGF
Ga0137368_104954481	3300012358	Vadose Zone Soil	MPFLMSFALEHEILTLAWIDNASVQFPLNVYATKG*
Ga0137368_108625842	3300012358	Vadose Zone Soil	MSFLMSFALEPEIVTFAWIDNASVQFPLNIYATKRFILPH*
Ga0137373_100887082	3300012532	Vadose Zone Soil	MPFLMSFALQHAIVTLAWIDNASVQFPLNIYATKGFPCVVSLLK*
Ga0134075_103654591	3300014154	Grasslands Soil	MSFLMSFALEPEIVTLAWIENASVQFPLNIYATKG*
Ga0134078_105529872	3300014157	Grasslands Soil	MPFLMSFALEHEIVTFAWIDNASVQFPLNIDATKGYSYF*
Ga0134078_105653612	3300014157	Grasslands Soil	MPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG*
Ga0134112_103861612	3300017656	Grasslands Soil	MPFLMSFVLEPEIVTLAWIDNASVQFPLNIYAASSGKA
Ga0184619_102192002	3300018061	Groundwater Sediment	MPFLMSFALEHEVVTFAWIDDASVQFPLNIYATKG
Ga0184618_101917331	3300018071	Groundwater Sediment	MPFLMSFALEPEIMTLAWIDNASVQFPLNIYATKGLTRAD
Ga0184618_102080621	3300018071	Groundwater Sediment	MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKGLLLW
Ga0184612_104557311	3300018078	Groundwater Sediment	MPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG
Ga0066655_111128292	3300018431	Grasslands Soil	MSFLMSFALEPEIVTLAWIDNASVQFPLNIYATKG
Ga0190270_119932533	3300018469	Soil	MPFLMSFALEPEIMTLAWIDNASVQFLLNIYATKG
Ga0066669_116117471	3300018482	Grasslands Soil	MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKA
Ga0066669_121283552	3300018482	Grasslands Soil	MSFLVSFALEPEIVTLAWIDNDSVQFPLNFYATKG
Ga0210382_100113094	3300021080	Groundwater Sediment	MPFLMSFALEHEIVTIAWLDNASVQFPLNIYATKE
Ga0210382_100500951	3300021080	Groundwater Sediment	MPFVMSFALEHEIVTLTWIDNASVQFPLNIYATKGIT
Ga0210382_104641501	3300021080	Groundwater Sediment	MPFLMSFALEHEIVTFAWIDNASVQFPLNICATKGL
Ga0222622_111348261	3300022756	Groundwater Sediment	GNGRGAMPFLMSFALEHEIVTFAWIDNASVQFPLNIYATKG
Ga0207670_100237684	3300025936	Switchgrass Rhizosphere	MPSLMSFALEHEIVTFAWIDNASVQLPLNIYATKG
Ga0207670_101301663	3300025936	Switchgrass Rhizosphere	MPFLMSFALEHEIVTLAWIENAFAQFPINIHATKV
Ga0207670_102542621	3300025936	Switchgrass Rhizosphere	MPFLMSFALEHEIVTFAWIDNASVQFALTIYATKELFFEISR
Ga0207670_116620681	3300025936	Switchgrass Rhizosphere	MPFFMNFALEHEIVTLAWIDNASVQFPLNIYATKGFT
Ga0209236_12080162	3300026298	Grasslands Soil	MPFLMSFALEPEIVTIAWIDKASVQFPLTIYATKG
Ga0209470_12985032	3300026324	Soil	FAMEPEIVTLAWIDNASVQFQLNIYATKEHSKRGTATTSI
Ga0209807_11127092	3300026530	Soil	MPFLMSFALEHEIVTLAWIDNASVQFPLNIYATKAFTD
Ga0209807_12104832	3300026530	Soil	MPFLMSFALEREIVTLAWIDYVSVQFPLNIYATKG
Ga0209157_12342502	3300026537	Soil	MSLLMSFAPEPEIVTLAWIDNASVQFPLNIYATKGYSKRGTA
Ga0308179_10051521	3300031424	Soil	MSFLMRFALEHEIVTLAWIDNASVQFPLNIYATKGLIQK
Ga0370546_020602_157_264	3300034681	Soil	MPFLMSFALEPEIMTLAWIDNASVQFPPNIYATGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100864

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences