Metagenome Family F100859

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100859
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	59 residues
Representative Sequence	MKTKTKEITPTPGINKTGRTRLVAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQA
Number of Associated Samples	85
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.20 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	95.10 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.275 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (23.529 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 51.14% β-sheet: 0.00% Coil/Unstructured: 48.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07676	PD40	17.65
PF07638	Sigma70_ECF	15.69
PF13884	Peptidase_S74	3.92
PF13366	PDDEXK_3	0.98
PF01527	HTH_Tnp_1	0.98
PF00069	Pkinase	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	15.69
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	51.96 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	51.96 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.98 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.98 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.98 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.98 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	48.04 %
Unclassified	root	N/A	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	4.90 %
Arthrobacter sp. ok909	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. ok909	0.98 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_109545422	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300002558\|JGI25385J37094_10175642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300002568\|C688J35102_119831265	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300004114\|Ga0062593_102431417	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	592	Open in IMG/M
3300004157\|Ga0062590_102969576	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300004463\|Ga0063356_101143451	All Organisms → cellular organisms → Bacteria → Acidobacteria	1126	Open in IMG/M
3300004479\|Ga0062595_102354522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	527	Open in IMG/M
3300004480\|Ga0062592_102692620	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300005166\|Ga0066674_10204502	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	939	Open in IMG/M
3300005172\|Ga0066683_10380968	Not Available	873	Open in IMG/M
3300005172\|Ga0066683_10502343	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300005186\|Ga0066676_10088111	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300005186\|Ga0066676_11168405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300005334\|Ga0068869_101047646	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300005450\|Ga0066682_10741831	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	599	Open in IMG/M
3300005451\|Ga0066681_10119549	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300005451\|Ga0066681_10386444	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300005457\|Ga0070662_101046277	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005457\|Ga0070662_101559294	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	570	Open in IMG/M
3300005536\|Ga0070697_102030378	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300005544\|Ga0070686_101967284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300005560\|Ga0066670_10319827	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300005569\|Ga0066705_10428941	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005578\|Ga0068854_101617987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300006032\|Ga0066696_10158030	Not Available	1419	Open in IMG/M
3300006034\|Ga0066656_10777459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. ok909	613	Open in IMG/M
3300006046\|Ga0066652_100865155	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300006791\|Ga0066653_10351398	Not Available	747	Open in IMG/M
3300006796\|Ga0066665_11116997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	600	Open in IMG/M
3300006797\|Ga0066659_11546860	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300006797\|Ga0066659_11781210	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	521	Open in IMG/M
3300009012\|Ga0066710_102648894	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300010040\|Ga0126308_10447157	All Organisms → cellular organisms → Bacteria → Acidobacteria	867	Open in IMG/M
3300010333\|Ga0134080_10030000	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
3300010399\|Ga0134127_11038973	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	881	Open in IMG/M
3300012198\|Ga0137364_10573015	Not Available	850	Open in IMG/M
3300012198\|Ga0137364_11219358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300012199\|Ga0137383_11314389	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300012208\|Ga0137376_10246907	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300012208\|Ga0137376_11749124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300012208\|Ga0137376_11814566	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300012211\|Ga0137377_11582262	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	580	Open in IMG/M
3300012350\|Ga0137372_10200356	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300012350\|Ga0137372_10710523	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	727	Open in IMG/M
3300012350\|Ga0137372_10847325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300012353\|Ga0137367_11089590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300012356\|Ga0137371_10417092	Not Available	1040	Open in IMG/M
3300012685\|Ga0137397_11142423	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300012896\|Ga0157303_10282371	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	522	Open in IMG/M
3300012915\|Ga0157302_10285557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300012929\|Ga0137404_11521967	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300012930\|Ga0137407_10566785	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1064	Open in IMG/M
3300012958\|Ga0164299_11341500	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300012960\|Ga0164301_10717423	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754	Open in IMG/M
3300012961\|Ga0164302_11073231	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	634	Open in IMG/M
3300012961\|Ga0164302_11386958	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	573	Open in IMG/M
3300012976\|Ga0134076_10055348	All Organisms → cellular organisms → Bacteria	1504	Open in IMG/M
3300012986\|Ga0164304_10963660	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	672	Open in IMG/M
3300013297\|Ga0157378_11121465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	824	Open in IMG/M
3300013503\|Ga0120127_10121162	Not Available	603	Open in IMG/M
3300014969\|Ga0157376_12837470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	524	Open in IMG/M
3300015264\|Ga0137403_10599722	All Organisms → cellular organisms → Bacteria → Acidobacteria	967	Open in IMG/M
3300015357\|Ga0134072_10292384	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	604	Open in IMG/M
3300015358\|Ga0134089_10497794	Not Available	533	Open in IMG/M
3300015373\|Ga0132257_100721410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1240	Open in IMG/M
3300015374\|Ga0132255_105859764	Not Available	520	Open in IMG/M
3300017654\|Ga0134069_1171388	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	732	Open in IMG/M
3300018054\|Ga0184621_10095969	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300018431\|Ga0066655_11208360	Not Available	536	Open in IMG/M
3300018431\|Ga0066655_11388695	Not Available	509	Open in IMG/M
3300018433\|Ga0066667_11007434	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300018433\|Ga0066667_11412783	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300018482\|Ga0066669_10198216	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300019361\|Ga0173482_10242830	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	763	Open in IMG/M
3300019879\|Ga0193723_1014896	All Organisms → cellular organisms → Bacteria	2430	Open in IMG/M
3300019890\|Ga0193728_1008139	All Organisms → cellular organisms → Bacteria	5301	Open in IMG/M
3300020002\|Ga0193730_1020428	All Organisms → cellular organisms → Bacteria	1910	Open in IMG/M
3300020002\|Ga0193730_1027894	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300020015\|Ga0193734_1088598	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300020021\|Ga0193726_1252295	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300021344\|Ga0193719_10029034	All Organisms → cellular organisms → Bacteria	2382	Open in IMG/M
3300025315\|Ga0207697_10018014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2899	Open in IMG/M
3300025920\|Ga0207649_11509184	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300025933\|Ga0207706_10416490	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300025933\|Ga0207706_11073451	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300025938\|Ga0207704_10742684	Not Available	816	Open in IMG/M
3300025942\|Ga0207689_10436150	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1094	Open in IMG/M
3300025986\|Ga0207658_10328126	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1327	Open in IMG/M
3300026307\|Ga0209469_1114820	Not Available	694	Open in IMG/M
3300026323\|Ga0209472_1240514	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	581	Open in IMG/M
3300026324\|Ga0209470_1114147	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1203	Open in IMG/M
3300026342\|Ga0209057_1210532	Not Available	552	Open in IMG/M
3300026343\|Ga0209159_1184362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	721	Open in IMG/M
3300026538\|Ga0209056_10351497	Not Available	967	Open in IMG/M
3300028793\|Ga0307299_10365855	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300028807\|Ga0307305_10142731	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300028807\|Ga0307305_10217437	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300031231\|Ga0170824_107636282	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300031231\|Ga0170824_122003460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	680	Open in IMG/M
3300031474\|Ga0170818_112065249	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	598	Open in IMG/M
3300031720\|Ga0307469_10510709	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300033412\|Ga0310810_10507552	All Organisms → cellular organisms → Bacteria → Acidobacteria	1196	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.31%
Host-Associated	Host-Associated	15.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Plants	Host-Associated → Plants	15.69%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.84%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Loam	Environmental → Terrestrial → Soil → Loam	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	41.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	30.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	23.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020002	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1095454222	3300000956	Soil	MKTKTKEITSTPGINKTGRARLAAIFGWPLLLALVILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWI
JGI25385J37094_101756422	3300002558	Grasslands Soil	MKTKTKEITPIPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVG
C688J35102_1198312651	3300002568	Soil	MTMKGKLMKTKTKEITPTPGMNKTGRTQLAAIFRWPLLLTLLILPQMVQAQ
Ga0062593_1024314172	3300004114	Soil	MKTKTKEITSTEGINKTGRTRLVAIFRWPLLLALLILPEMVQAQWTATVGAQTDEKGI
Ga0062590_1029695761	3300004157	Soil	MKTNRKKIASTVGANKSGRTRLIAFFRWPLLLALLILPQMVQAQWTATVGAQTDEK
Ga0063356_1011434511	3300004463	Arabidopsis Thaliana Rhizosphere	MKTKTKEITSTEGINKTGRTRLVAIFRWPLLLALLILPEMVQAQW
Ga0062595_1023545221	3300004479	Soil	MKTNRKKIASTVGANKSGRTRLIAFFRWPLLLALLILPQMVQAQWTATVGAQTDEKG
Ga0062592_1026926201	3300004480	Soil	MKTNRKKIASTVGANKSGRTRLIAFFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFL
Ga0066674_102045022	3300005166	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWAAIVGAQT*
Ga0066683_103809682	3300005172	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGA
Ga0066683_105023432	3300005172	Soil	MKTKAKKITPAPDINKTRRTRLAAIFRWPLLLALLILPQMMQAQWTAIAGAQTDEKGIQALAFLPNEIWIHAGDR
Ga0066676_100881111	3300005186	Soil	MKTKTKEITPIPGINKTGRTRLAAIFRWPLLLALLILPQMVQA
Ga0066676_111684051	3300005186	Soil	MKTKTKAITPTPGINKTGRTRLAAIFRWPLLLAFLILPPMLQAQWTATVGAQIDDKGIQAQFSEWSPPVN
Ga0068869_1010476461	3300005334	Miscanthus Rhizosphere	MKTKAKEIAPTLGINKTGRTRLAAIFRWPLLLALVIVPQMVQAQWTATVGAQTDEKGI
Ga0066682_107418312	3300005450	Soil	MKTKTKEITPIPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWIHAG
Ga0066681_101195491	3300005451	Soil	MKTKTKQTTPSPGINRTGRTRLVAIFRWPLLIALLTLPQMMQAQWTATVGSQTDDKAIAALAFLPNEIWIHAG
Ga0066681_103864442	3300005451	Soil	MKIKTKEMTPTPGINKTGRTRFVAIFGWPLLIGLLTLPQMMQAQWTATVGSQTDDKAIAALAFLPNEIWIHAG
Ga0070662_1010462772	3300005457	Corn Rhizosphere	MKTKTKEIAPTAGENKTGRTRLVAIVRWPLLLALFILPQMVQAQWTATVGAQ
Ga0070662_1015592942	3300005457	Corn Rhizosphere	MKTNRKKIASTVGANKSGRTRLIAFFRWPLLLALLILPQMVQAQWTATVGA
Ga0070697_1020303781	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWI
Ga0070686_1019672841	3300005544	Switchgrass Rhizosphere	MKTNRKKIASTVGANKSGRTRLIAFFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAF
Ga0066670_103198272	3300005560	Soil	MKTKTKQTTPSPGINRTGRTRLVAIFRWPLLIALLTLPQMMQAQWTATVGSQTDDKAIAALAFLPNEIWIHAGDRITW
Ga0066705_104289411	3300005569	Soil	MQGINKTGRTRLAAIFRWPLLLALLILPPMVQAQWTATVGAQTDEKGIQALAFLPNEIWIHAGERI
Ga0068854_1016179872	3300005578	Corn Rhizosphere	MKTKTKEIASSVGENKTGRTRLVAIFRWPLLLALLILPQMVQAQWTATVGAQTDEK
Ga0066696_101580303	3300006032	Soil	MKTKTKEITPSPGINKTGRTRFVAIFGWPLLIGLLTLPQMMQAQWTATVG
Ga0066656_107774591	3300006034	Soil	MKTKTKAITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDDKGIQALAFLPNEIWIHAGDRI
Ga0066652_1008651551	3300006046	Soil	MKTKTKEMTPTSGINKTGRTRLVAIFLWPLLLALLILPQMVQAQWTATVGAQTDDKGIQALAFLPNEIWIHAGDRI
Ga0066653_103513981	3300006791	Soil	MKTKTKEITPTPGINKAGRTRLAAIFRWPLLLALLILPQMVQA
Ga0066665_111169972	3300006796	Soil	MKTKTKEMTPTPGINKSGRTRLAAIFRWPLFLTLLILPQMVQAQWTATVGAQTDDKGIQA
Ga0066659_115468602	3300006797	Soil	MTMKGKLMKTKTKEITPTPSINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQT
Ga0066659_117812101	3300006797	Soil	MKTKTKPITPTPDINKTGRTRLVAIFRWPLLLALLVLPQMVQAHWTATVGAQTDEKG
Ga0066710_1026488942	3300009012	Grasslands Soil	MKTKTKEITPTPGINKTGRTRLVAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQA
Ga0126308_104471572	3300010040	Serpentine Soil	MKTKTKAITPTPGINKTGGTRLAAIFRWPLLLTLLILPHMVQAQWTATVGAQTDE
Ga0134080_100300003	3300010333	Grasslands Soil	MKTKTKEMTPTPGINKSGRTRLAAIFRWPLFLTLLILPQIVQAQWTATVGAQTDDKGIQALAFLPN
Ga0134127_110389731	3300010399	Terrestrial Soil	MKTNRKEIAPTVGANKSGRTRLLAIFRWPLLLVLVIVPQMVQAQWTATVGAQTDEKGIQALA
Ga0137364_105730152	3300012198	Vadose Zone Soil	MKTKTKQTTPSPGINKTGRTRLVAIFRWPLLIALLTLPQMMQAQWTATVGSQ
Ga0137364_112193581	3300012198	Vadose Zone Soil	MNTSSAPSSDRQITNTPGINKTWRTQLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDDKGIQALAFLPNEIW
Ga0137383_113143891	3300012199	Vadose Zone Soil	MKTKTKEITATPGINKNGRTRLAAIFRWPLLLALLILPKMVQAQWTAT
Ga0137376_102469073	3300012208	Vadose Zone Soil	MKTKTKVITPTPGINKTGRTRLAAVFRWPLLLALLILPQMMQAQWTATV
Ga0137376_117491241	3300012208	Vadose Zone Soil	MKTKTKAITPTLGINKTGRTRLAAIFRWPVLLALLILPQMVQAQWTATVGTQTDD
Ga0137376_118145661	3300012208	Vadose Zone Soil	MKTKTKAITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQA
Ga0137377_115822621	3300012211	Vadose Zone Soil	MKTKTKAITPTPGINKTGRTRLAAIFLWPLLLALLVLPQMVQ
Ga0137372_102003563	3300012350	Vadose Zone Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLTLLILPQMVQAQ
Ga0137372_107105232	3300012350	Vadose Zone Soil	MKTKTKEMTPTPGINKSGRTRLAAIFRWPLFLTLLILPQMVRAQWTATVGAQTDDKGIQALAFLPNEIW
Ga0137372_108473252	3300012350	Vadose Zone Soil	MKTKKKEITATPGINKNGRTRLAAIFRWPLLLALLILPQVVQAQWTATVGTQTDDKGIQALAFLPNEIWI
Ga0137367_110895901	3300012353	Vadose Zone Soil	MKPKTKEITPTPGINKTGRSRLAAIFHWPLLLAVLILPQMVQAQWTAIVGTQTDDKGIQALAFLPNEIWI
Ga0137371_104170921	3300012356	Vadose Zone Soil	MKTKTKEMTPTPGINKSGRTRLAAIFRWPLFLALLILPQMVQAQWTATVGAQTDDK
Ga0137397_111424232	3300012685	Vadose Zone Soil	MKTKTKEIAPTVGVSKTGRTHLVAIFRWPLLLALLILPQMVHAQWTATV
Ga0157303_102823711	3300012896	Soil	MKTKTKEITPAQGINKTGRTRLLAIFRWPLLLVLVIVPQMVQAQWTATVGAQTDEKGIQALAFL
Ga0157302_102855571	3300012915	Soil	MKTNRKEIAPTVVANKTGRTRLLAIFRWALLLVLVIVPQMVQAQWTATVGAQTDEKGIQALAFLPNE
Ga0137404_115219671	3300012929	Vadose Zone Soil	MKTKTKEITPTQGINKTGRTRLAAIFLWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEI
Ga0137407_105667851	3300012930	Vadose Zone Soil	MKTKTKEITPTPSINKTGRTRLAAIFRCPLLLALLILPQMVQAQWTATVGAQTDDKGIQTLAFLPNEIWIHTGNHIT*
Ga0164299_113415001	3300012958	Soil	MKTKTKEIAPIAGVNKTGRTRLVAIFRWSLFLALLILPQMVQAQWTATVGAQTDEKGIQALA
Ga0164301_107174231	3300012960	Soil	MKIKTKEIAPTAGGNKTGWTRLAAFRWPLFLALVILPQMVQAQWTATVGAQTDEKGIQALAF
Ga0164302_110732311	3300012961	Soil	MKTKTKEITPAQGINKTGRTRLTAIFRWPLLLALVIVPQMVQAQWTATVGAQTHEKGIQALA
Ga0164302_113869581	3300012961	Soil	MKIKTKEIAPTAGVKKTGRTRLVAIFRWPLLLALLILPEMVQAQWTATVGAQTDEKGIQALAF
Ga0134076_100553482	3300012976	Grasslands Soil	MKTKTKEMTPTAGINKTGRTRLAAIFRWLLLLALLILPQMVQAQWAAIVGAQT*
Ga0164304_109636601	3300012986	Soil	MKTKTKEIAPTAGVNKTGRTRLVAIFRWSLFLALLILPQMVQAQWTATVGAQTDEKGIQALAF
Ga0157378_111214651	3300013297	Miscanthus Rhizosphere	MKSKTKEITPAQGINKTGRTRLAAIFRWPLLLALVIVPQMVQAQWTATVGAQTDEKGIQALAFLPN
Ga0120127_101211622	3300013503	Permafrost	MKTKTKEITPAQGINKTGPTRLAAIFRWPLLLALLILPQMVQA
Ga0157376_128374701	3300014969	Miscanthus Rhizosphere	MKTKTEAITSTPGMNKTGRTRLAAIFRWPLLLALLIVPKMLQAQWTATVGAQTDEKGIQVLAFLPNEIWIHAG
Ga0137403_105997221	3300015264	Vadose Zone Soil	MKGKLMKSKTKEITPTQDINKTGRTRLAAIFLWPLLLALLILPQMVQAQWTATVGAQTDE
Ga0134072_102923841	3300015357	Grasslands Soil	MKTKTKAITPTLGINKTGRTRLAAIFRWPVLLALLILPQMMQAQWTATVGTQTDDKGIQALAFLPNEIWIHAGDRI
Ga0134089_104977942	3300015358	Grasslands Soil	MKTKTKEIAPTAGVNKTGRTRLVAIFRWPLLLALLILLQMVQAQ
Ga0132257_1007214103	3300015373	Arabidopsis Rhizosphere	MKTKTREITPTPSINKTGRTRLTAIFHWPLLLALLILPQLMQAQWTATVGAQTD
Ga0132255_1058597641	3300015374	Arabidopsis Rhizosphere	MKTKTKESTPAQGIIKTWRTRRAAIFRWPLFLVLVIVPQMVQAQWTATVGAQTDEKGI
Ga0134069_11713882	3300017654	Grasslands Soil	MKTKTKEMTPTPGINKSGRTRLAAIFRWPLFLTLLILPQMVQAQWTATVGAQTDDKGIQALAFLPN
Ga0184621_100959692	3300018054	Groundwater Sediment	MKTKTKEITPTPGINKTGRTRLAAIFSWPLLLALLIVPQML
Ga0066655_112083602	3300018431	Grasslands Soil	MKTKTKQITPSPDINKTGRTRLVASFRWPLLLALLILPQMVQAQWTATVG
Ga0066655_113886951	3300018431	Grasslands Soil	MKTITKDMTPTPGINKTGRTRLTAIFLWPLLLALLI
Ga0066667_110074341	3300018433	Grasslands Soil	MKTKTKEITSTSGINKTRRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPN
Ga0066667_114127831	3300018433	Grasslands Soil	MKTKTKAITPTLGINKTGRTRLAAIFRWPVLLALLILPQMMQAQWTATVGTQTDDKGIQALAFLPNEIWI
Ga0066669_101982161	3300018482	Grasslands Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLFLALLILPQMVQAQWTATVGAETDDKAIAALAF
Ga0173482_102428301	3300019361	Soil	MKSKTKEITPAQGINKTGRTRRAAIFRWPLLLALVIVPQMVQAQWTATVGAQTDE
Ga0193723_10148961	3300019879	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTAP
Ga0193728_10081391	3300019890	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPPMVQAQWTATVGAQTDEKG
Ga0193730_10204283	3300020002	Soil	MKTKTKEITPTPGINKTGGSRLAAIFRWPLLLALLIL
Ga0193730_10278943	3300020002	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPP
Ga0193734_10885981	3300020015	Soil	MTMKGKLMKTKTKEMTPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVG
Ga0193726_12522951	3300020021	Soil	MKTKTKEITPTPGINKTGRTRLAAIFSWPLLLVPLIVPQMLQAQWTATVGAQ
Ga0193719_100290344	3300021344	Soil	MKTKTKAITPTPGMNKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWIHAGDSI
Ga0207697_100180144	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKTNRKKIASTVGANKSGRTRLIAFFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWIHAGERIT
Ga0207649_115091841	3300025920	Corn Rhizosphere	MKSKTKEITPAQGINKTGRTRLAAIFRWPLLLALVIVPQMVQAQWTATVGAQTDEKGIQ
Ga0207706_104164903	3300025933	Corn Rhizosphere	MKTKTKEIASSVGENKTGRTRLVAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWIH
Ga0207706_110734511	3300025933	Corn Rhizosphere	MKTKTEAITSTPGINKTGRTRLAAIFRWPLLLALLIVPKMLQAQWTATVGAQTDEKGIQV
Ga0207704_107426841	3300025938	Miscanthus Rhizosphere	MKTKAKEIAPTLGINKTGRTRLVAIFRWSLFLALLILPQMVQAQWTATVGAQTDEKGIQALAFLP
Ga0207689_104361502	3300025942	Miscanthus Rhizosphere	MKTNRKEIAPTVGANKTGRTRLLAIFRWPLLLVLVIVPQMVQAQWTA
Ga0207658_103281263	3300025986	Switchgrass Rhizosphere	MKTNRKKIASTVGANKSGRTRLIAFFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWI
Ga0209469_11148201	3300026307	Soil	MKTKTKEMTPTPGINKSGRTRLAAIFRWPLFLTLLILPQIVQAQWTAT
Ga0209472_12405142	3300026323	Soil	MKTKTKEITPIPGINKTGRTRLAAIFRWPLLLALLIFPQMVQAQWTAIVGTQ
Ga0209470_11141471	3300026324	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWAAIVGAQT
Ga0209057_12105322	3300026342	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLFLALLILPQMVQAQWT
Ga0209159_11843621	3300026343	Soil	MKTKTKEITPTPGINKSGRTRLAAIFRWPLFLTLLILPQMVRAQWTATVGAQTDDKGIQALAFLPNEIWIHPGDRITWTWQA
Ga0209056_103514971	3300026538	Soil	MKTKTKEMTPTPGINKSGRTRLAAIFRWPLFLTLLILPQMVQAQWTATVGAQTDDK
Ga0307299_103658551	3300028793	Soil	MKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPQMV
Ga0307305_101427312	3300028807	Soil	MTMKGKLMKTKTKEMTPTPGINKTGRTRLATIFRWPLLLALLILPQMVQAQWTATVGAQTDDKGIQALAFLPNEI
Ga0307305_102174371	3300028807	Soil	MTMKGKLMKTKTKEITPTPGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQTDDKGIQALAF
Ga0170824_1076362821	3300031231	Forest Soil	MNTSSAPSSDRQITDPPGINKTGRTRLAAIFRSPLLLALLILPQMVQAQWTATVGAQTDDEGIQ
Ga0170824_1220034602	3300031231	Forest Soil	MKTKTKEIASSVGENKTGRTRLVAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFL
Ga0170818_1120652491	3300031474	Forest Soil	MKTKTKEITHTAGVNKTGRTRLVAIFRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQA
Ga0307469_105107091	3300031720	Hardwood Forest Soil	MKTKTKEIAPTAGVNKTGRTRLVAICRWPLLLALLILPQMVQAQWTATVGAQTDEKGIQALAFLPNEIWIHAGE
Ga0310810_105075523	3300033412	Soil	MKTKTKEITPTSGINKTGRTRLAAIFRWPLLLALLILPQMVQAQWTATVGAQT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100859

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences