Metagenome / Metatranscriptome Family F100819

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100819
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	75 residues
Representative Sequence	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDGAAAERH
Number of Associated Samples	66
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.43 %
% of genes near scaffold ends (potentially truncated)	24.51 %
% of genes from short scaffolds (< 2000 bps)	77.45 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.902 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog (24.510 % of family members)
Environment Ontology (ENVO)	Unclassified (69.608 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (41.176 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.96% β-sheet: 28.85% Coil/Unstructured: 45.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00455	DeoRC	6.86
PF02777	Sod_Fe_C	4.90
PF00081	Sod_Fe_N	3.92
PF04172	LrgB	2.94
PF08220	HTH_DeoR	2.94
PF00296	Bac_luciferase	2.94
PF03466	LysR_substrate	2.94
PF00465	Fe-ADH	1.96
PF13188	PAS_8	1.96
PF00563	EAL	1.96
PF03050	DDE_Tnp_IS66	1.96
PF13419	HAD_2	0.98
PF02653	BPD_transp_2	0.98
PF01568	Molydop_binding	0.98
PF08240	ADH_N	0.98
PF09594	GT87	0.98
PF13844	Glyco_transf_41	0.98
PF00753	Lactamase_B	0.98
PF13358	DDE_3	0.98
PF00374	NiFeSe_Hases	0.98
PF08402	TOBE_2	0.98
PF00528	BPD_transp_1	0.98
PF00005	ABC_tran	0.98
PF00486	Trans_reg_C	0.98
PF08379	Bact_transglu_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1349	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	Transcription [K]	13.73
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	8.82
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	6.86
COG1346	Putative effector of murein hydrolase	Cell wall/membrane/envelope biogenesis [M]	2.94
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.94
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	1.96
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	1.96
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	1.96
COG3436	Transposase	Mobilome: prophages, transposons [X]	1.96
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	1.96
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	1.96
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	1.96
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	1.96
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	1.96
COG3259	Coenzyme F420-reducing hydrogenase, alpha subunit	Energy production and conversion [C]	0.98
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG0374	Ni,Fe-hydrogenase I large subunit	Energy production and conversion [C]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.90 %
Unclassified	root	N/A	45.10 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.90 %
Unclassified	root	N/A	45.10 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.90 %
Unclassified	root	N/A	45.10 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	49.02 %
Unclassified	root	N/A	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.10 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.16 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.10 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28.43 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.10 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.94 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.98 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.98 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.98 %
Bartonellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bartonellaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.10 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.98 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.98 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.98 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.98 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.98 %
Bartonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bartonellaceae → Bartonella	0.98 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.10 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.96 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.98 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.98 %
Bartonella tamiae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bartonellaceae → Bartonella → Bartonella tamiae	0.98 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.98 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.98 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.98 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.10 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.96 %
unclassified Polyangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae	0.98 %
Sphingomonas sp. 8AM	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. 8AM	0.98 %
Bartonella tamiae Th239	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bartonellaceae → Bartonella → Bartonella tamiae → Bartonella tamiae Th239	0.98 %
Methylocystis sp. SC2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	0.98 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.98 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.98 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.10 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.96 %
Polyangiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	0.98 %
Sphingomonas sp. 8AM	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. 8AM	0.98 %
Bartonella tamiae Th239	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bartonellaceae → Bartonella → Bartonella tamiae → Bartonella tamiae Th239	0.98 %
Methylocystis sp. SC2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	0.98 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.98 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.98 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000313\|WSSedB1CaDRAFT_10029089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1101	Open in IMG/M
3300000313\|WSSedB1CaDRAFT_10045372	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300006795\|Ga0075520_1088248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1424	Open in IMG/M
3300006795\|Ga0075520_1248029	Not Available	741	Open in IMG/M
3300009621\|Ga0116116_1040055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1478	Open in IMG/M
3300009635\|Ga0116117_1020447	All Organisms → cellular organisms → Bacteria → Proteobacteria	1665	Open in IMG/M
3300009643\|Ga0116110_1242597	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300014158\|Ga0181521_10144307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1378	Open in IMG/M
3300014160\|Ga0181517_10000676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	43982	Open in IMG/M
3300014160\|Ga0181517_10270329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	902	Open in IMG/M
3300014160\|Ga0181517_10381862	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300014160\|Ga0181517_10545932	Not Available	583	Open in IMG/M
3300014161\|Ga0181529_10018843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5831	Open in IMG/M
3300014161\|Ga0181529_10156377	Not Available	1381	Open in IMG/M
3300014161\|Ga0181529_10162030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1349	Open in IMG/M
3300014161\|Ga0181529_10407782	Not Available	734	Open in IMG/M
3300014161\|Ga0181529_10475208	Not Available	665	Open in IMG/M
3300014167\|Ga0181528_10260298	Not Available	937	Open in IMG/M
3300014167\|Ga0181528_10306395	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300014169\|Ga0181531_10015904	All Organisms → cellular organisms → Bacteria → Proteobacteria	4314	Open in IMG/M
3300014199\|Ga0181535_10637866	Not Available	609	Open in IMG/M
3300014199\|Ga0181535_10703150	Not Available	575	Open in IMG/M
3300014199\|Ga0181535_10754438	Not Available	552	Open in IMG/M
3300014199\|Ga0181535_10815633	Not Available	528	Open in IMG/M
3300014490\|Ga0182010_10807926	Not Available	532	Open in IMG/M
3300014491\|Ga0182014_10280299	Not Available	863	Open in IMG/M
3300014491\|Ga0182014_10395955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SC2	690	Open in IMG/M
3300014492\|Ga0182013_10018199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6535	Open in IMG/M
3300014492\|Ga0182013_10039894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3746	Open in IMG/M
3300014492\|Ga0182013_10108428	All Organisms → cellular organisms → Bacteria → Proteobacteria	1852	Open in IMG/M
3300014493\|Ga0182016_10322519	Not Available	937	Open in IMG/M
3300014494\|Ga0182017_10066236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2391	Open in IMG/M
3300014498\|Ga0182019_10118651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. 8AM	1641	Open in IMG/M
3300014498\|Ga0182019_10253652	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300014502\|Ga0182021_11760342	Not Available	746	Open in IMG/M
3300014502\|Ga0182021_12421483	Not Available	631	Open in IMG/M
3300014502\|Ga0182021_12828480	Not Available	583	Open in IMG/M
3300014655\|Ga0181516_10005228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	8053	Open in IMG/M
3300014655\|Ga0181516_10396164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	705	Open in IMG/M
3300014658\|Ga0181519_10795753	Not Available	584	Open in IMG/M
3300014838\|Ga0182030_10045135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	7201	Open in IMG/M
3300014839\|Ga0182027_12065388	Not Available	544	Open in IMG/M
3300017925\|Ga0187856_1059610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1633	Open in IMG/M
3300017938\|Ga0187854_10302879	Not Available	683	Open in IMG/M
3300017946\|Ga0187879_10461632	Not Available	704	Open in IMG/M
3300017948\|Ga0187847_10093022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1667	Open in IMG/M
3300017948\|Ga0187847_10286624	Not Available	899	Open in IMG/M
3300017988\|Ga0181520_10006938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16974	Open in IMG/M
3300017988\|Ga0181520_10007190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16550	Open in IMG/M
3300017988\|Ga0181520_10027851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6058	Open in IMG/M
3300017988\|Ga0181520_10471686	Not Available	894	Open in IMG/M
3300017988\|Ga0181520_10473317	Not Available	892	Open in IMG/M
3300018016\|Ga0187880_1058408	All Organisms → cellular organisms → Bacteria	2028	Open in IMG/M
3300018022\|Ga0187864_10327930	Not Available	676	Open in IMG/M
3300018030\|Ga0187869_10314159	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300018033\|Ga0187867_10044753	All Organisms → cellular organisms → Bacteria → Proteobacteria	2684	Open in IMG/M
3300018034\|Ga0187863_10354154	Not Available	817	Open in IMG/M
3300018042\|Ga0187871_10214435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1074	Open in IMG/M
3300018042\|Ga0187871_10743125	Not Available	546	Open in IMG/M
3300019258\|Ga0181504_1403351	Not Available	639	Open in IMG/M
3300019787\|Ga0182031_1022786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1384	Open in IMG/M
3300023090\|Ga0224558_1022608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3128	Open in IMG/M
3300023091\|Ga0224559_1110062	Not Available	1012	Open in IMG/M
3300023091\|Ga0224559_1279531	Not Available	558	Open in IMG/M
3300025650\|Ga0209385_1169769	Not Available	630	Open in IMG/M
3300025812\|Ga0208457_1048432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300025878\|Ga0209584_10187679	Not Available	786	Open in IMG/M
3300025888\|Ga0209540_10184520	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	1244	Open in IMG/M
3300026381\|Ga0255357_1037217	Not Available	727	Open in IMG/M
3300028745\|Ga0302267_10211564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300028762\|Ga0302202_10155657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1220	Open in IMG/M
3300029907\|Ga0311329_10802017	Not Available	600	Open in IMG/M
3300029915\|Ga0311358_10117095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2660	Open in IMG/M
3300029992\|Ga0302276_10386431	Not Available	581	Open in IMG/M
3300030051\|Ga0302195_10161544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1061	Open in IMG/M
3300031235\|Ga0265330_10024230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2753	Open in IMG/M
3300031235\|Ga0265330_10111845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1166	Open in IMG/M
3300031235\|Ga0265330_10450498	Not Available	546	Open in IMG/M
3300031239\|Ga0265328_10456749	Not Available	505	Open in IMG/M
3300031241\|Ga0265325_10019452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3753	Open in IMG/M
3300031241\|Ga0265325_10260892	Not Available	782	Open in IMG/M
3300031247\|Ga0265340_10173047	Not Available	978	Open in IMG/M
3300031344\|Ga0265316_11245073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031344\|Ga0265316_11264538	Not Available	510	Open in IMG/M
3300031711\|Ga0265314_10491889	Not Available	647	Open in IMG/M
3300031726\|Ga0302321_103453353	Not Available	514	Open in IMG/M
3300031813\|Ga0316217_10245199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	715	Open in IMG/M
3300032561\|Ga0316222_1103329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300032722\|Ga0316231_1204302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300032829\|Ga0335070_10037415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5451	Open in IMG/M
3300032893\|Ga0335069_10096180	Not Available	3751	Open in IMG/M
3300032893\|Ga0335069_11363712	Not Available	769	Open in IMG/M
3300033402\|Ga0326728_10005789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34121	Open in IMG/M
3300033402\|Ga0326728_10242412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1732	Open in IMG/M
3300033402\|Ga0326728_10610742	Not Available	847	Open in IMG/M
3300033405\|Ga0326727_10198130	Not Available	2205	Open in IMG/M
3300033755\|Ga0371489_0333059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bartonellaceae → Bartonella → Bartonella tamiae → Bartonella tamiae Th239	720	Open in IMG/M
3300033822\|Ga0334828_113888	Not Available	654	Open in IMG/M
3300033824\|Ga0334840_038097	All Organisms → cellular organisms → Bacteria → Proteobacteria	1475	Open in IMG/M
3300033824\|Ga0334840_040509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1422	Open in IMG/M
3300034282\|Ga0370492_0003219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	6580	Open in IMG/M
3300034282\|Ga0370492_0014468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3231	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.20%
Host-Associated	Host-Associated	9.80%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	46.08%
Terrestrial	Environmental → Terrestrial	44.12%
Plants	Host-Associated → Plants	9.80%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	44.12%
Soil	Environmental → Terrestrial → Soil	25.49%
Peat	Environmental → Terrestrial → Peat	18.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Marine	Environmental → Aquatic → Marine	1.96%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	41.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	4.90%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.96%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	37.25%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	15.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.92%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	2.94%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.96%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	24.51%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	9.80%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	7.84%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	7.84%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	6.86%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	5.88%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.90%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	4.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.96%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000313	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site B1 Cattail	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009621	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014161	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019258	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023091	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 30-34	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025812	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300026381	Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T-25	Environmental	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029992	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_3	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300031235	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG	Host-Associated	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300032561	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18011	Environmental	Open in IMG/M
3300032722	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18027	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033822	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9	Environmental	Open in IMG/M
3300033824	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S2 5-9	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
WSSedB1CaDRAFT_100290892	3300000313	Wetland	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIPDSGDSSQNRADAIQAARRLALRFATEDGAAAERH*
WSSedB1CaDRAFT_100453721	3300000313	Wetland	EISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIPDSGDNRQNRADAIQAARRLALRFATEDGAAAERH*
Ga0075520_10882482	3300006795	Arctic Peat Soil	MPTHTEISSHFAQSPGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRADAILAARRLALRFATEDAAAERH*
Ga0075520_12480292	3300006795	Arctic Peat Soil	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRNEAIRAASRLALRLATDESGLDSIR*
Ga0116116_10400552	3300009621	Peatland	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRTDAIRAARRLALRFATEDSAVAERH*
Ga0116117_10204471	3300009635	Peatland	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSGQNRIDAIRAARRLALRFATDEGAVSERH*
Ga0116110_12425971	3300009643	Peatland	MPTHTEVLGRFAQSRRRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRAEAIRAARRLALRFATDEGGAAERH*
Ga0181521_101443071	3300014158	Bog	PAAVPILPGRGLAMPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGRNRADAIRAARRLALRFATDDAGAAEPH*
Ga0181517_100006765	3300014160	Bog	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDGVAAERH*
Ga0181517_102703292	3300014160	Bog	TEVSGRFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADRGDSGENRAEAIRAARRLALRFATEDGATAERH*
Ga0181517_103818622	3300014160	Bog	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADRGDSGENRAEAIRAARRLALRFATEDGAAAERH*
Ga0181517_105459322	3300014160	Bog	MPTYTEVSNRFAESRVRGRLFTTVVVCFDDATEVMHVRVGVGDSGDSIQNRKEAIRAARRLALRFATDESGLEGHL*
Ga0181529_100188432	3300014161	Bog	MPTHTEISSHFAQSPGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRTDAIRAARRLALRFATEDGAAAERH*
Ga0181529_101563772	3300014161	Bog	MPTHTEVSSRFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSNQNRTDAIRAARRLALRFATEDGVAGERH*
Ga0181529_101620301	3300014161	Bog	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDSAAAERH*
Ga0181529_104077821	3300014161	Bog	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADRGDSGENRAEAIRAARRLALRFATEDGATAERH*
Ga0181529_104752082	3300014161	Bog	AQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDGAAAERH*
Ga0181528_102602981	3300014167	Bog	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDGAAAERH*
Ga0181528_103063952	3300014167	Bog	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSGENRAEAIRAARRLALRFATEDTAAAERH*
Ga0181531_100159042	3300014169	Bog	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIPDSGDSGENRAEAIRAARRLALRFATEDGAPAERH*
Ga0181535_106378661	3300014199	Bog	NRFAESRVRGRLFTTVVVCFDDATEVMHVRVGVGDSGDSIQNRKEAIRAARRLALRFATDESGLEGHL*
Ga0181535_107031501	3300014199	Bog	MPTHTEVSSRFAESRPRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSGQNRTEAIRAARRLALRFATDDGVAGERN*
Ga0181535_107544381	3300014199	Bog	ISSHFAQSRGRGPLFTTVVVCFDDGSEVMQVRVGIPDSGDSGENRAEAIRAARRLALRFATEDGAPAERH*
Ga0181535_108156332	3300014199	Bog	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADRGDSGENRAEAIRAARRLALR
Ga0182010_108079261	3300014490	Fen	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAICAARRLALRFATDESGLDSIR*
Ga0182014_102802992	3300014491	Bog	AMPTHTEVLGRFAQSRRRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRAEAIRAARRLALRFATDEGGAAERH*
Ga0182014_103959551	3300014491	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAIRAARRLALRFATDESGLDSTR*
Ga0182013_100181995	3300014492	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFEDASEVMQVQVGIGDSGDSGRNRNEAISAARRLALRFATDEGGLDSIR*
Ga0182013_100398942	3300014492	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSGQNRKDAIRAARRLAFRFATDEGGLDSIL*
Ga0182013_101084282	3300014492	Bog	MPTHSEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRNEAIRAARRLALRFATDDSGLDSIR*
Ga0182016_103225191	3300014493	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRNEAIRAARRLALRFATDDSGLDSIR*
Ga0182017_100662363	3300014494	Fen	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAICAARRLALRFATDESGLDPIR*
Ga0182019_101186511	3300014498	Fen	MPTHTEISSHFAQSPGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRRDAIRAARRLALRFATEDAASAERH*
Ga0182019_102536521	3300014498	Fen	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRSEAIRAARRLA*
Ga0182021_117603421	3300014502	Fen	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAIHAARRLALRFATDEGGLDSIR*
Ga0182021_124214832	3300014502	Fen	MPTHTEVSSRFAESRPRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSGQNRTEAIRAARRLALRFATEDGVAGERH*
Ga0182021_128284801	3300014502	Fen	MPTHTEVSSRFAESRGRGLLCTTVVVCFDDASEVMQVRVGIDDSGDSGQNRKEAIRVARRLALRFATDESALNPILGV*
Ga0181516_100052281	3300014655	Bog	RFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDGAAAERH*
Ga0181516_103961641	3300014655	Bog	RFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDGVAAERH*
Ga0181519_107957532	3300014658	Bog	SNRFAESRVRGRLFTTVVVCFDDATEVMHVRVGVGDSGDSIQNRKEAIRAARRLALRFATDESGLEGHL*
Ga0182030_100451352	3300014838	Bog	MPTHTEVSSRFAESRPRGLLFTTVVVCFDDANEVMQVRVGIGDSGDSGQNRTEAIRAARRLALRFAKDDGAAGDRH*
Ga0182027_120653881	3300014839	Fen	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAIHATRRHALRFAIDEGGLDSIR*
Ga0187856_10596102	3300017925	Peatland	MPTHTEVLGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRADAIRAARRLALRFATDDGAAAERH
Ga0187854_103028791	3300017938	Peatland	MPTHTEVLGRFAQSRRRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRAEAIRAARRLALRFATDEGGAAERH
Ga0187879_104616321	3300017946	Peatland	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSGQNRIDAIRAARRLALRFATDEGAVSERH
Ga0187847_100930222	3300017948	Peatland	MPTHTEVSSRFAESRGRGLLFTTVDVCFEDASEVMQVQVGIGDSGDSGRNRNEAISAARRLALRFATDEGGLDSIR
Ga0187847_102866241	3300017948	Peatland	MPTYTEVSNRFAESRVRGRLFTTVVVCFDDATEVMHVRVGVGDSGDSIQNRKEAIRAARRLALRFATDESGLEGHL
Ga0181520_100069387	3300017988	Bog	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRTDAIRAARRLALRFATEDGVAAERH
Ga0181520_100071905	3300017988	Bog	MPTHTEISSHFAQSPGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRTDAIRAARRLALRFATEDGAAAERH
Ga0181520_100278514	3300017988	Bog	MPTHTEVSGRFAQSRGCGPLFTTVVVCFEDANEVMQVRVGITDSGDSGQNRAEAIRAARRLALRFATEDGAAAERH
Ga0181520_104716862	3300017988	Bog	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRSDAIRAARRLALRFATDEGAASERH
Ga0181520_104733172	3300017988	Bog	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADRGDSGENRAEAIRAARRLALRFATEDGATAERH
Ga0187880_10584083	3300018016	Peatland	MPTHTEVVGRFAQSRRRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRADAIRAARRLALRFATDDGAAAERH
Ga0187864_103279301	3300018022	Peatland	AVPMAPGRGLAMPTHTEVLGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRADAIRAARRLALRFATDDGAAAERH
Ga0187869_103141592	3300018030	Peatland	MPTHTEVLGRFAQSRRRGPLFTTVVVCFDDANEVMQVRVGIADSGDSNQNRTDAIRAARRLALRFATEDGAAGERH
Ga0187867_100447534	3300018033	Peatland	MPTHTEVLGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRAEAIRAARRLALRFATDEGGAAERH
Ga0187863_103541543	3300018034	Peatland	MPTHTEVSSRFAESRGRGLLFTTVVVCFEDASEVMQVQVGIGDSGDSGRNRNEAISAARRLALRFATDEG
Ga0187871_102144351	3300018042	Peatland	RGRGPLFTTVVVCFDDASEVMQVRVGIADRGDSGENRAEAIRAARRLALRFATEDGATAERH
Ga0187871_107431251	3300018042	Peatland	MPTHTEVSSRFAESRGRGLLFTTVVVCFEDASEVMQVQVGIGDSGDSGRNRNEAISAARRLALRFATDEGGLDSIR
Ga0181504_14033512	3300019258	Peatland	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIPDSGDSGENRAEAIRAARRLALRFATEDGAPAERH
Ga0182031_10227862	3300019787	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSGQNRKDAIRAARRLAFRFATDEGGLDSIL
Ga0224558_10226082	3300023090	Soil	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAICAARRLALRFATDESGLDSIR
Ga0224559_11100621	3300023091	Soil	THTEVSSRFAESRPRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSGQNRTEAIRAARRLALRFATDDGAAGERH
Ga0224559_12795311	3300023091	Soil	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAIRAARRLALRFATDESGLDSTR
Ga0209385_11697691	3300025650	Arctic Peat Soil	MPTQTEVSSRFAESRGRGLLFTTVFVCFDDASEVMQVRVGIRESGTSGQNREEAIRAARCLALRFATDESGLDPIH
Ga0208457_10484321	3300025812	Peatland	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRTDAIRAARRLALRFATEDSAVAERH
Ga0209584_101876792	3300025878	Arctic Peat Soil	MPTHTEVSSRFAESGGRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSRQNREEAIRAARRLALRFATDESGIQPVQELVEWDD
Ga0209540_101845202	3300025888	Arctic Peat Soil	MPTQTEVSSHFAESRGRGLLFTTVFVCFDDASEVMQVRVGIRESGDSGQNREEAIRAARCVALRFATDESGLDPIH
Ga0255357_10372171	3300026381	Soil	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKEAICAARRLALRFATDESGLDPIR
Ga0302267_102115642	3300028745	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFEDASEVMQVQVGIGDSGDSGQNRSEAIRAARRLA
Ga0302202_101556572	3300028762	Bog	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIDDSGDSSQNRTDAIRAARRLALRFATEDGAAAERH
Ga0311329_108020172	3300029907	Bog	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIDDSGDSSQNRTDAIRAARRLALRFATED
Ga0311358_101170954	3300029915	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRKDAIRAARRLAFRFATDEGGLDSIL
Ga0302276_103864311	3300029992	Bog	LELPTSTPAAVPMTPGRGLTMPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIDDSGDSSQNRTDAIRAARRLALRFATEDGAAAERH
Ga0302195_101615442	3300030051	Bog	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSGQNRKDAIRAARRLAFRFATDEGGL
Ga0265330_100242302	3300031235	Rhizosphere	MPTHTEISSHFAQSPGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRADAIRAARRLALRFATEDGAAAERH
Ga0265330_101118452	3300031235	Rhizosphere	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDNSQNRMDAIRAARRLALRFATEDNAAADRH
Ga0265330_104504982	3300031235	Rhizosphere	MPTHTEVSSHFAESRGRGLLFTTVVVCFDDASEVMQVRVGIDDSGDSGQNRKEAIRVARRLALRFATDEIDLDLIRYVCD
Ga0265328_104567491	3300031239	Rhizosphere	MPTHTEVLGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIDDSGDSGQNRAEAIRAARRLARRFANEDAGATEGGRGGLAGG
Ga0265325_100194523	3300031241	Rhizosphere	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDNTENRMEAIRAARRLALRFATEDNAAADRH
Ga0265325_102608921	3300031241	Rhizosphere	MPTHTEVSGRFAQSRARGPLFTTVVVCFDDANEVMQVRVGIDDRGDNGENRAEAIRAARRLALRFATDEGALAERH
Ga0265340_101730471	3300031247	Rhizosphere	MPTQTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRTEAIRAARRLALRFATDESGLDSIR
Ga0265316_112450731	3300031344	Rhizosphere	LTMPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDNSQNRMEAIRAARRLALRFATEDNAAADRH
Ga0265316_112645381	3300031344	Rhizosphere	MPTHTEISSQFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSGENRAEAIRAARRLALRFATEDGAAAERH
Ga0265314_104918892	3300031711	Rhizosphere	MPTQTEVSSRFAESGARGLIFTTVVVCFDDASEVMQVRVGIGDCGDSGENRQEAIRAARRLALRF
Ga0302321_1034533531	3300031726	Fen	MPTHTEVSSHFAESRGRGLLFTTVVVCFDDASEVMQVRVGIDDSGDTGQNRKEAILAARRLALRFANDEGAAAERH
Ga0316217_102451991	3300031813	Freshwater	SGHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDNSQNRMDAIRAARRLALRFATEDNAAADRH
Ga0316222_11033291	3300032561	Freshwater	MPTHTEISSHFAQSPGRGPLFTTVVVCFDDASEVMQVRVGIADSGDNSQNRADAIRAARRLALRFATEDGAAAERH
Ga0316231_12043022	3300032722	Freshwater	MPTHTEISGHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDNSQNRMDAIRAARRLALRFATEDNAAADRH
Ga0335070_100374152	3300032829	Soil	MPTHTEVSSRFAESGGRGLLFTTVVVCFDDASEVMQVRVGIGDSGDNGVNRQEAIRAARRLALRFATDDSAAGERRL
Ga0335069_100961802	3300032893	Soil	MPTHTEVSSRFAESGGRGLLFTTVVVCFDDASEVMQVRVGIGDSGDNGVNRQEAIRAARRLALRFATDDNGAGERRL
Ga0335069_113637122	3300032893	Soil	RTEVSSRFAESPGCDQLFATVIVCFDGPSGVMQVGVEIDDSGDSARNRNEAIRAARRLALRFATEDNSAADS
Ga0326728_1000578913	3300033402	Peat Soil	MPTHTEVSSRFAESRRRGELFTTVVVCFDDASEVMQVRVGIDDSGDNGQNRTEAIRAARRLALRFATDDSSLGDRH
Ga0326728_102424122	3300033402	Peat Soil	MPTHTEISSHFAQSRGRGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRTDAIRAARRLALRFATEDGAAAERH
Ga0326728_106107421	3300033402	Peat Soil	MPTHTEVSSRFAQSRGCGPLFTTVVVCFDDASEVMQVRVGIADSGDSSQNRTDAIRAARRLALRFATEDGAAGERH
Ga0326727_101981303	3300033405	Peat Soil	MPTHTEVSSRFAESRRRGELFTTVVVCFDDASEVMQVRVGIDDSGDNGQNRREAIRAARRLALRFATDDSSLADRH
Ga0371489_0333059_180_410	3300033755	Peat Soil	MPTHTEVSGRFAQSRGRGPLFTTVVVCFDDANEVMQVRVGIPDSGDSGQNRIDAIRAARRLALRFATEDVAAAERH
Ga0334828_113888_92_322	3300033822	Soil	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRNEAIRAARRLALRFATDDSGLDSIR
Ga0334840_038097_950_1180	3300033824	Soil	MPTHSEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVQVGIGDSGDSGQNRNEAIRAARRLALRFATDDSGLDSIR
Ga0334840_040509_3_230	3300033824	Soil	PTHTEVSSRFAESRGRGLLFTTVVVCFEDASEVMQVQVGIGDSGDSGRNRNEAISAARRLALRFATDEGGLDSIR
Ga0370492_0003219_4191_4421	3300034282	Untreated Peat Soil	MPTHTEISSRFAQSRERGPLFTTVVVCFDDANEVMQVRVGIADSGDSGQNRTDAIRAARRLALRFATEDSSAAERQ
Ga0370492_0014468_2218_2448	3300034282	Untreated Peat Soil	MPTHTEVSSRFAESRGRGLLFTTVVVCFDDASEVMQVRVGIGDSGDSGENRKEAIRAARRLALRFATDESGLDSIR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100819

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences