Metagenome / Metatranscriptome Family F100792

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100792
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	74 residues
Representative Sequence	MDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDSLTVIEGEEGGAAAER
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.41 %
% of genes near scaffold ends (potentially truncated)	20.59 %
% of genes from short scaffolds (< 2000 bps)	81.37 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.020 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.255 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.00% β-sheet: 22.00% Coil/Unstructured: 65.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF12802	MarR_2	15.84
PF01047	MarR	9.90
PF01546	Peptidase_M20	9.90
PF07687	M20_dimer	7.92
PF00698	Acyl_transf_1	4.95
PF02801	Ketoacyl-synt_C	2.97
PF13964	Kelch_6	1.98
PF00361	Proton_antipo_M	0.99
PF13056	DUF3918	0.99
PF05199	GMC_oxred_C	0.99
PF00296	Bac_luciferase	0.99
PF00920	ILVD_EDD	0.99
PF01035	DNA_binding_1	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.98
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.99
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.99
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.99
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	81.37 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	78.43 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.94 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	60.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	47.06 %
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	13.73 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	47.06 %
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	13.73 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.98 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	47.06 %
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	13.73 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.98 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	47.06 %
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	13.73 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.98 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	47.06 %
Chloroflexi bacterium RBG_16_69_14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	13.73 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.98 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.98 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Unclassified	root	N/A	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c0827420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	648	Open in IMG/M
3300000956\|JGI10216J12902_111382100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	522	Open in IMG/M
3300002568\|C688J35102_120424069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1058	Open in IMG/M
3300004643\|Ga0062591_100850083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	849	Open in IMG/M
3300005181\|Ga0066678_10541203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	773	Open in IMG/M
3300005295\|Ga0065707_10280366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1049	Open in IMG/M
3300005440\|Ga0070705_100196867	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005458\|Ga0070681_10667190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	955	Open in IMG/M
3300005468\|Ga0070707_101535354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	633	Open in IMG/M
3300005471\|Ga0070698_100624401	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005518\|Ga0070699_100008946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	8674	Open in IMG/M
3300005518\|Ga0070699_100107564	All Organisms → cellular organisms → Bacteria	2447	Open in IMG/M
3300005526\|Ga0073909_10137634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1006	Open in IMG/M
3300005556\|Ga0066707_10785396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	590	Open in IMG/M
3300006796\|Ga0066665_10528495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	962	Open in IMG/M
3300009012\|Ga0066710_100067474	All Organisms → cellular organisms → Bacteria	4565	Open in IMG/M
3300009012\|Ga0066710_104103038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	544	Open in IMG/M
3300009090\|Ga0099827_10460634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1090	Open in IMG/M
3300009137\|Ga0066709_100015612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7316	Open in IMG/M
3300009143\|Ga0099792_10000836	All Organisms → cellular organisms → Bacteria	11284	Open in IMG/M
3300009789\|Ga0126307_10007888	All Organisms → cellular organisms → Bacteria	7614	Open in IMG/M
3300009789\|Ga0126307_10476633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1007	Open in IMG/M
3300010036\|Ga0126305_11153593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	534	Open in IMG/M
3300010039\|Ga0126309_10031011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2429	Open in IMG/M
3300010041\|Ga0126312_10380399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1002	Open in IMG/M
3300010159\|Ga0099796_10148819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	920	Open in IMG/M
3300010333\|Ga0134080_10291566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	730	Open in IMG/M
3300010400\|Ga0134122_11101751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	787	Open in IMG/M
3300012200\|Ga0137382_10158966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1536	Open in IMG/M
3300012203\|Ga0137399_10646482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	890	Open in IMG/M
3300012205\|Ga0137362_10266493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1481	Open in IMG/M
3300012361\|Ga0137360_10428117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1119	Open in IMG/M
3300012362\|Ga0137361_11347217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	637	Open in IMG/M
3300012683\|Ga0137398_10526080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	814	Open in IMG/M
3300012944\|Ga0137410_10204246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1531	Open in IMG/M
3300017997\|Ga0184610_1087738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	973	Open in IMG/M
3300017997\|Ga0184610_1100885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	915	Open in IMG/M
3300018000\|Ga0184604_10140792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	787	Open in IMG/M
3300018000\|Ga0184604_10230142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	645	Open in IMG/M
3300018027\|Ga0184605_10118011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1180	Open in IMG/M
3300018028\|Ga0184608_10043321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1746	Open in IMG/M
3300018051\|Ga0184620_10168741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	715	Open in IMG/M
3300018052\|Ga0184638_1207079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	688	Open in IMG/M
3300018054\|Ga0184621_10268581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	605	Open in IMG/M
3300018056\|Ga0184623_10000267	All Organisms → cellular organisms → Bacteria	22230	Open in IMG/M
3300018061\|Ga0184619_10056996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1708	Open in IMG/M
3300018071\|Ga0184618_10463825	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	532	Open in IMG/M
3300018076\|Ga0184609_10008826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3688	Open in IMG/M
3300018076\|Ga0184609_10034323	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300018422\|Ga0190265_10206651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1980	Open in IMG/M
3300018422\|Ga0190265_11826975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	716	Open in IMG/M
3300018429\|Ga0190272_10287228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1264	Open in IMG/M
3300018429\|Ga0190272_12996496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300018465\|Ga0190269_10687222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	712	Open in IMG/M
3300018476\|Ga0190274_12474113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	616	Open in IMG/M
3300019269\|Ga0184644_1797610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300019377\|Ga0190264_11478919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	588	Open in IMG/M
3300019883\|Ga0193725_1017164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2001	Open in IMG/M
3300019884\|Ga0193741_1050239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1076	Open in IMG/M
3300020001\|Ga0193731_1058072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1017	Open in IMG/M
3300020003\|Ga0193739_1102235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	721	Open in IMG/M
3300021080\|Ga0210382_10295236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	713	Open in IMG/M
3300021363\|Ga0193699_10006158	All Organisms → cellular organisms → Bacteria	4327	Open in IMG/M
3300021363\|Ga0193699_10102745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1155	Open in IMG/M
3300021363\|Ga0193699_10453076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	528	Open in IMG/M
3300021415\|Ga0193694_1049137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	584	Open in IMG/M
3300022756\|Ga0222622_10158298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1468	Open in IMG/M
3300022756\|Ga0222622_10948221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	631	Open in IMG/M
3300025160\|Ga0209109_10187214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1026	Open in IMG/M
3300025912\|Ga0207707_10381228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1212	Open in IMG/M
3300026118\|Ga0207675_101894513	Not Available	615	Open in IMG/M
3300027821\|Ga0209811_10093397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1074	Open in IMG/M
3300027882\|Ga0209590_10672692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	663	Open in IMG/M
3300027903\|Ga0209488_10008408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7678	Open in IMG/M
3300028711\|Ga0307293_10293772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	515	Open in IMG/M
3300028719\|Ga0307301_10095840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	938	Open in IMG/M
3300028719\|Ga0307301_10095840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	938	Open in IMG/M
3300028768\|Ga0307280_10039824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1438	Open in IMG/M
3300028768\|Ga0307280_10403522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	510	Open in IMG/M
3300028784\|Ga0307282_10001461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	8334	Open in IMG/M
3300028784\|Ga0307282_10057520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1746	Open in IMG/M
3300028799\|Ga0307284_10013232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2514	Open in IMG/M
3300028811\|Ga0307292_10120163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300028814\|Ga0307302_10045406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	2040	Open in IMG/M
3300028824\|Ga0307310_10182680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	983	Open in IMG/M
3300028828\|Ga0307312_10147336	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300028828\|Ga0307312_10198056	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300028828\|Ga0307312_10832637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	612	Open in IMG/M
3300030006\|Ga0299907_10061658	All Organisms → cellular organisms → Bacteria	3011	Open in IMG/M
3300030006\|Ga0299907_10304289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1300	Open in IMG/M
3300030006\|Ga0299907_10632377	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	828	Open in IMG/M
3300030619\|Ga0268386_10125540	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	1971	Open in IMG/M
3300031228\|Ga0299914_11073330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	653	Open in IMG/M
3300031421\|Ga0308194_10397468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	502	Open in IMG/M
3300031548\|Ga0307408_100463884	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300031731\|Ga0307405_10031238	All Organisms → cellular organisms → Bacteria	3133	Open in IMG/M
3300031949\|Ga0214473_10934557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	922	Open in IMG/M
3300033811\|Ga0364924_000082	All Organisms → cellular organisms → Bacteria	11793	Open in IMG/M
3300034123\|Ga0370479_0093674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	789	Open in IMG/M
3300034164\|Ga0364940_0025645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_69_14	1512	Open in IMG/M
3300034169\|Ga0370480_0171345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	739	Open in IMG/M
3300034690\|Ga0364923_0113700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	687	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.41%
Aquatic	Environmental → Aquatic	17.65%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.47%
Sediment	Environmental → Aquatic → Sediment	15.69%
Floodplain	Environmental → Terrestrial → Floodplain	2.94%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	15.69%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	15.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	13.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.76%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021415	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s1	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034123	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_01D_15	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034169	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_15	Environmental	Open in IMG/M
3300034690	Sediment microbial communities from East River floodplain, Colorado, United States - 60_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_08274202	3300000033	Soil	MDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIPGEEGGPAAE*
JGI10216J12902_1113821002	3300000956	Soil	MDQARVIELALKIEHRHSDGSWGEMQEDRSHHHDSADHDPERSWGIRRIFRCKSCPEAITVIDGEEGGTIGGR*
C688J35102_1204240691	3300002568	Soil	MDQQRFLAQYRLEHAHGDGTWAPMVEERSHHDAADHDVERGWARRRIFRCTSCGEAATLVPGDEGDAEPQ*
Ga0062591_1008500832	3300004643	Soil	MDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIPGEENGPPAAE*
Ga0066678_105412031	3300005181	Soil	MAATQPPTSRTDEESTMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDSMTVIEGEEGGAAAER*
Ga0065707_102803662	3300005295	Switchgrass Rhizosphere	MDQARIELNYRVEHRHGDGSWGEMVEDQSHHNAAAHDPERNWGIRRLFRCTSCDEAVTLIPGDQTGEPED*
Ga0070705_1001968672	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MDQARIIEMALRIEHRHGDGTWGEFEEDRSHHSSTDHDPERSWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH*
Ga0070681_106671902	3300005458	Corn Rhizosphere	MDQSRIVEMALRIEHRHSDGTWGELQEERTPHSPADADPERAWGFRRIFRCTSCGDTVTVIEGEEGGDEGPR*
Ga0070707_1015353542	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	QRPAPSGRVAQWPPRSRQPAARTDEESTMDQARIIEMALRIEHRHGDGTWGEFEEDRSHHSSTDHDPERSWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH*
Ga0070698_1006244013	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDQARIELNYRVEHRHGDGSWGEMVEDQSHHDAAAHDPERNWGIRRLFRCTSCDEAVTLIPGDQTGEPED*
Ga0070699_1000089467	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDQARIELNYRVEHRHGDGSWGEMLEEQSHHDPAAHDPERNWGIRRLFRCTSCDESVTLVSGEEGGPEPEE*
Ga0070699_1001075644	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDQARIIEMALRIEHRHGDGTWGEFEEDRSHHSSTDHDPERSWGFRRIFRCTSCGDSLTVIE
Ga0073909_101376342	3300005526	Surface Soil	MAATQPPAAPPRTDEESTMDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSSTDHDPERSWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH*
Ga0066707_107853961	3300005556	Soil	MAATQPPAAPLPRMDEESTMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDAVTVVEGEEGGPEAPR*
Ga0066665_105284952	3300006796	Soil	MAATQPPAAPLPRTDEEATMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDAITVVEGEEGGPEAPR*
Ga0066710_1000674745	3300009012	Grasslands Soil	MDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDVVTVVEGEEGGLEALR
Ga0066710_1041030382	3300009012	Grasslands Soil	MAATQPPTSRTDEESTMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDSMTVIEGEEGGAAAER
Ga0099827_104606341	3300009090	Vadose Zone Soil	MDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDSMTVIEGEEGGAAAER*
Ga0066709_1000156126	3300009137	Grasslands Soil	MPRMDEESTMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDAVTVVEGEEGGPEAPR*
Ga0099792_100008363	3300009143	Vadose Zone Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRGHHSPSDHDPERDWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH*
Ga0126307_100078881	3300009789	Serpentine Soil	MDQQRFAERYRLEHRHHDGSWGEMIEQRSHHDAADHDVERGWAKRRIFRCRTCDESATIVPGDEGGAIDRR*
Ga0126307_104766332	3300009789	Serpentine Soil	VNQLRILEVAYRIDHRHKDGSWGEMVEDASHHGPAEHDPERGWARGRIFRCTSCDESVTVVPGEEGGPPAVR*
Ga0126305_111535932	3300010036	Serpentine Soil	ARRERRMDQQRFAERYRLEHRHHDGSWGEMIEQRSHHDAADHDVERGWAKRRIFRCRTCDESATIVPGDEGGAIDRR*
Ga0126309_100310113	3300010039	Serpentine Soil	MLEVAYRIDHRHKDGSWGEMVEDTSHHGPAEHDPERDWARGRIFRCTSCEESVTVVPGEEGGPPAGR*
Ga0126312_103803992	3300010041	Serpentine Soil	VNQLRILEVAYRIDHRHKDGSWGEMVEDTSHHGPAEHDPERGWARGRIFRCTSCEESVTLVPGEEGGPPSDR*
Ga0099796_101488192	3300010159	Vadose Zone Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRGHHSPSDHDPERSWGIRRIFRCSSCGDSLTVIEGEEGGAAAEH*
Ga0134080_102915661	3300010333	Grasslands Soil	MAATQPPAAPLPRTDEEATMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDAVTVV
Ga0134122_111017511	3300010400	Terrestrial Soil	MAALPPPRRSMDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEETVTLIPGDEEGPPANE*
Ga0137382_101589661	3300012200	Vadose Zone Soil	MAATQPPAAPLPRMDEESTMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDAVTVVEGEEGGPEAPR*
Ga0137399_106464822	3300012203	Vadose Zone Soil	MDQARIVEMALRIEHRHGDGSWGELQEDRSHHSPSDHDPERLWGVRRIFRCTSCGDAVTVIDGDEGGAAAKP*
Ga0137362_102664933	3300012205	Vadose Zone Soil	MAATQPPAAPPRTDEESAMDQARIIEMALRIEHRHGDGTWGEFQEDRGHHSPSDHDPERDWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH*
Ga0137360_104281172	3300012361	Vadose Zone Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERDWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH*
Ga0137361_113472172	3300012362	Vadose Zone Soil	MAATQPPTSRTDEESTMDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDSERSWGIRRIFRCTSCGDAMTVIEGEEGGAGAER*
Ga0137398_105260801	3300012683	Vadose Zone Soil	GGRVAQWPPRSRQPRRRAPDEESAMDQARIIEMALRIEHRHGDGTWGEFQEDRGHHSPSDHDPERDWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH*
Ga0137410_102042461	3300012944	Vadose Zone Soil	MAATQPPAAPPRTDEESAMDQARIIEMALRIEHRHGDGTWGEFQEDRGHHSPSDHDPERSWGIRRIFRCSSCGDSLTVIEGEEGGAAAEH*
Ga0184610_10877382	3300017997	Groundwater Sediment	MDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIPGEEDGPPAND
Ga0184610_11008851	3300017997	Groundwater Sediment	RMLAMAYRIDHRHADGSWGEMVEDRTHHSPADHDPERSWANHRIFRCTSCDSSVTVVDEEGSPTITD
Ga0184604_101407922	3300018000	Groundwater Sediment	MDQARIVEMALRIEHEHHDGTWGEMAEDRRHHESADHDPERSWGIRRIFRCTSCPETLTVIEGEEGGPPPAFER
Ga0184604_102301422	3300018000	Groundwater Sediment	MDAQARIIEMAYRIDHRHPDGSWGEMVEDRAHHDSANHDPERKWGRFRIFRCTSCDEEVAIANSAGIPVEER
Ga0184605_101180112	3300018027	Groundwater Sediment	MDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDSLTVIEGDEDGPAAER
Ga0184608_100433212	3300018028	Groundwater Sediment	MDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIPGEEGGPPAAE
Ga0184620_101687412	3300018051	Groundwater Sediment	MDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEETVTLIPGEEEGPPANE
Ga0184638_12070793	3300018052	Groundwater Sediment	SARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIPGEEDGPPANE
Ga0184621_102685813	3300018054	Groundwater Sediment	MDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIPGEEDGPPANE
Ga0184623_1000026714	3300018056	Groundwater Sediment	MDAQARMLAMAYRIDHRHADGSWGEMVEDRTHHSPADHDPERSWANHRIFRCTSCDSSVTVVDEEGSPTITD
Ga0184619_100569962	3300018061	Groundwater Sediment	MDQSRLAELLYRVDHRHKDGSWGEMLEDRGHHDAVDHDPERHWGTRRIFRCTSCDEAVTLVPGEEGGPLSPP
Ga0184618_104638252	3300018071	Groundwater Sediment	MDAQARIIEMAYRIDHRHPDGSWGEMVEDRAHHDSANHDPERKWGRFRIFRCTSCDETVVLADEDDMPVPQD
Ga0184609_100088266	3300018076	Groundwater Sediment	RIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIPGEEDGPPANE
Ga0184609_100343234	3300018076	Groundwater Sediment	MDQSVFDFRYRVEHRHKDGSWGEMVEDRAHDSSDHDPERAWEKRRIFRCTSCDEAATLNQ
Ga0190265_102066512	3300018422	Soil	MDAQARIIEMAYRIDHRHADGSWGEMVEDRTHHSPADHDPERAWSRFRIFRCTSCDASVAIANESGVPVTDPG
Ga0190265_118269751	3300018422	Soil	MDQARFEIAYRIEHRHGDGSWGEMVEDRSHHAPSDHDPERGWGLRRIFRCTSCDDVATLLPSEEASPPPPR
Ga0190272_102872283	3300018429	Soil	MDAQSRMLAMAYRIEHRHSDGSWGEMVEDRAPRSPAESDPERGWANHRIFRCTSCDTSVTLIDEDGSPPGSS
Ga0190272_129964962	3300018429	Soil	MDQASLELMYRIEHRHKDGSWGEMVESRTHHDAADHDPERGWGRHRIFRCTSCDESATLIPGDGSSDAKTD
Ga0190269_106872222	3300018465	Soil	MDQASMDHMLRLQHRHRDGSWGDMVEDRPHHAAADHDPERRWTLGRIFRCTSCEEAVTLVPGDEGGAAPER
Ga0190274_124741132	3300018476	Soil	MDQSRIVEMALRIEHRHSDGSWGELQEERTADSPANHDPERAWGFRRIFRCTSCGDAVTVIEGEEGGDVGPR
Ga0184644_17976102	3300019269	Groundwater Sediment	MDAQARIVEMAYRIDHRHPDGSWGEMVEDRSHHDPADHDPEKSWRKFRIFRCTSCDDEVAIADPAGIPVEER
Ga0190264_114789192	3300019377	Soil	MPEWPLSDSDEERLMDQTLFDLRYRIEHRHKDGSWGEMVEDRAHHSPSDHDPERAWGQRRIFRCTSCEEAATITPGEEGSSPSTR
Ga0193725_10171642	3300019883	Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRGHHSPSDHDPERSWGIRRIFRCSSCGDSLTVIEGEEGGAAAEH
Ga0193741_10502392	3300019884	Soil	MGRPSTAFEDADMDQASLELVYRIEHRHKDGSWGEMVEDRAHHAPSDHDPERGWGLRRIFRCTSCDESATLIPSEEGSPPATR
Ga0193731_10580722	3300020001	Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDAMTVIEGEEGGAAAER
Ga0193739_11022352	3300020003	Soil	MDQSLFDLRYRIEHRHKDGSWGEMVEDRAHHSPSDHDPERAWGQRRIFRCTSCEEAATITPGEEGSPPSSR
Ga0210382_102952362	3300021080	Groundwater Sediment	MDQATFELSYRVEHRHGDGSWGEMLEDRSREHDSAAHDPERNWGIRRIFRCTSCDEAVTLIPGENGGAEPEE
Ga0193699_100061583	3300021363	Soil	MDQSRIVEMALRIEHRHSDGSWGELQEDRSHHSPSDHDPERAWGFRRIFRCTSCGDAVTVVDGEEGGPPVQP
Ga0193699_101027452	3300021363	Soil	MDQSRIVEMALRIEHRHSDGTWGELQEERTADSPANHDPERAWGFRRIFRCTSCGDSVTVIEGEEGGDVGPR
Ga0193699_104530761	3300021363	Soil	KQPPAAPPRTDEESAMDQARIIEMALRIEHRHGDGSWGEFQEDRSHNSPSDHDPERLWGIRRIFRCTSCDDAVTIIEGDDEGPAAER
Ga0193694_10491371	3300021415	Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDSLTVIEGEEGGAAAER
Ga0222622_101582982	3300022756	Groundwater Sediment	MDQARLAEMVLRIEHQHADGTWGELAEDRSHHAPADHDPERLWGIRRIFRCTSCAETVTVIEGEEGGPPPAER
Ga0222622_109482212	3300022756	Groundwater Sediment	MDQARIAEIALRIEHRHSDDTWGVMQEERSHHDSADTDMERGWGIRRIFRCTSCPESVTVFDGDVGGRPGKP
Ga0209109_101872142	3300025160	Soil	VDRTLFELQYRLEHRHKDGSWAEMVEDRAHHGPADHDPERSWGLRRIFRCTSCDEAATLIPGEEASPPPSR
Ga0207707_103812282	3300025912	Corn Rhizosphere	MDQSRIVEMALRIEHRHSDGTWGELQEERTPHSPADADPERAWGFRRIFRCTSCGDTVTVIEGEEGGDEGPR
Ga0207675_1018945132	3300026118	Switchgrass Rhizosphere	RIIEMAYRIDHRHPDGSWGEMVEDRAHHDSANHDPERKWGRFRFFRCTSCDETVVLANADDLPVRDD
Ga0209811_100933972	3300027821	Surface Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSSTDHDPERSWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH
Ga0209590_106726922	3300027882	Vadose Zone Soil	MDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDSMTV
Ga0209488_100084085	3300027903	Vadose Zone Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRGHHSPSDHDPERDWGFRRIFRCTSCGDSLTVIEGEEGGAAAEH
Ga0307293_102937721	3300028711	Soil	VAQWRPITPLTPQPRTDEESAMDQARIVEMALRIEHEHHDGTWGEMAEDRRHHESADHDPERSWGIRRIFRCTSCPETLTVIEGEEGGPPPAFER
Ga0307301_100958402	3300028719	Soil	MDQASFEIYYKLQHRHKDGSWGEMSEDRSHHAPADHDPERGWALHRIFRCTSCDEAATLIPGEEASTPLTR
Ga0307301_100958403	3300028719	Soil	MDAQARILEMAYRIDHRHPDGSWGEMVEDRSHQNPADNDPEKGWRKFRIFRCTSCDEEVAIANSAGIPVEER
Ga0307280_100398242	3300028768	Soil	MDQSRIVEMALRIEHRHSDGTWGELQEDRSHHAPSDHDPERAWGFRRIFRCTSCGDSVTVVDGEEGGPPLEP
Ga0307280_104035222	3300028768	Soil	AEIALRIEHRHHDDTWGVMEEERHHGHDSAESDPERGWGIKRIFRCKTCPDTVTIFDGIVGGPPPQR
Ga0307282_100014611	3300028784	Soil	MDQARIVEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERGWGFRRIFRCTSCGDAVTVVEGEEGG
Ga0307282_100575202	3300028784	Soil	MDQSRIVEMALRIEHRHSDGTWGELQEERTADSPANHDPERAWGFRRIFRCTSCGDSVTVIEGEEGGDEGPR
Ga0307284_100132323	3300028799	Soil	MDQARIAEIALRIEHRHSDDTWGVMQEERSHHDSADTDMERGWGIRRIFRCTSCPESVTVFDGDVGCRPGKP
Ga0307292_101201632	3300028811	Soil	MDQARIIEMALRIEHRHGDGTWGEFQEDRSHHSPSDHDPERSWGIRRIFRCTSCGDAMTVIEGEEGGAAAEH
Ga0307302_100454061	3300028814	Soil	AYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEETVTLIPGEEEGPPANE
Ga0307310_101826802	3300028824	Soil	MNQSYILQEALRIEHRHKDGSWGEMVEGHEHTSVDHDPERQWRSGRIFRCTSCDESLTVVPGDEGAPAAET
Ga0307312_101473363	3300028828	Soil	MDQATFELSYRVEHRHGDGSWGEMLEDRSRDHDSAAHDPERNWGIRRIFRCTSCDEAVTLIPGENGGAEPEE
Ga0307312_101980563	3300028828	Soil	MDASARIVEMAYRIDHRHSDGSWGEMVEDRSHHSPANHDPERNWSLRRIFRCTSCEESVTLIP
Ga0307312_108326372	3300028828	Soil	MDQARLAEMVLRIEHQHADGTWGELAEDRSHHAPPDHDPERLWGIRRIFRCTSCPEKVTVIEGEEGGPSPEP
Ga0299907_100616583	3300030006	Soil	MDRSLEIDYRLQHRHRDGSWGEMVEDRAHHDAAQHDPERGWGLRRIFRCSSCDEVATITPGEEGGAPAER
Ga0299907_103042892	3300030006	Soil	ECENGPRAWSHHPHEGPPMDRSLEIDYRLQHRHRDGSWGEMVEDRAHHDAAQHDPERGWGLRRIFRCTSCDEMATITPGEEGGAPAER
Ga0299907_106323772	3300030006	Soil	MDRTFEILYRLEHRHKDGSWGEMVEDRAHHDAAQHDPERGWGFRRIFRCTSCDEVATITPGDEGGALRER
Ga0268386_101255401	3300030619	Soil	EILYRLEHRHKEGSWGEMVEDRAHHDAAQHDPERGWGFRRIFRCTSCDEVATITPGDEGGALRER
Ga0299914_110733301	3300031228	Soil	MDRSLEIDYRLQHRHRDGSWGEMVEDRAHHDAAQHDPERGWGLRRIFRCTSCDEMATITPGEEGGAPAER
Ga0308194_103974682	3300031421	Soil	MDQSRLAELLFRVDHRHHDGSWGEMLEDRSHHDARDHDPERHWGTRRIFRCTSCDEAVTLIPAEEGGPLSPP
Ga0307408_1004638841	3300031548	Rhizosphere	VNQLRILEVAYRIDHRHKDGSWGEMVEDASHHGPAEHDPERGWARGRIFRCTSCDESVTVVPGEEGGPPAV
Ga0307405_100312383	3300031731	Rhizosphere	VNQLRILEVAYRIDHRHKDGSWGEMVEDASHHGPAEHDPERGWARGRIFRCTSCDESVTVVPGEEGGPPAVR
Ga0214473_109345572	3300031949	Soil	MDSRFEIYYRIEHRHKDGSWGEMSEERAHHAPADHDPERSWGFRRIFRCTSCDEAVTVVPGEEGGPPAER
Ga0364924_000082_6749_7000	3300033811	Sediment	MGPPTIPDEEHPMDQASLEFVYRIEHRHKDGSWGELIEDRAHHDPADHDPERGWGIRRIFRCTSCDESATLMPGEESSPPATR
Ga0370479_0093674_42_257	3300034123	Untreated Peat Soil	MDQAQFELRYRIEHRHKDGSWGEMAEDRSHHDPADHDPERGWGLRRIFRCTSCDEAVTLNPGEEASPPPPR
Ga0364940_0025645_27_242	3300034164	Sediment	MDQASLEFVYRIEHRHKDGSWGELIEDRAHHDPADHDPERGWGIRRIFRCTSCDESATLMPGEESSPPATR
Ga0370480_0171345_212_427	3300034169	Untreated Peat Soil	MDQAQFELRYRIEHRHKDGSWGEMAEDRSHHDPADHDPERGWGLRRIFRCTTCDEAVTLNPGEEASPPPPR
Ga0364923_0113700_150_365	3300034690	Sediment	MDQASLEFVYRVEHRHKDGSWGEMVEDRAHHAPSDHDSERSWGIRRIFRCTSCDESTTLIPGEEGSPPAAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100792

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences