Metagenome / Metatranscriptome Family F100762

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100762
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	75 residues
Representative Sequence	FEHGELAPARAGIDGFIGTYNATADLLLLGVRVARAQGDRLGAQRYARKLQLDFPGTDQARALAQLDRNPG
Number of Associated Samples	96
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.14 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.80

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (32.353 % of family members)
Environment Ontology (ENVO)	Unclassified (24.510 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.941 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.54% β-sheet: 0.00% Coil/Unstructured: 46.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.80
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.80
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SCOP family	SCOP domain	Representative PDB	TM-score
a.118.8.0: automated matches	d3rkva_	3rkv	0.77904
a.118.8.1: Tetratricopeptide repeat (TPR)	d1w3ba_	1w3b	0.77317
a.118.8.0: automated matches	d6px0a_	6px0	0.77168
a.118.8.9: TPR-like repeats from PCI (proteasome / COP9 signalosome / eIF3) domains	d4lcta1	4lct	0.76316
a.118.8.1: Tetratricopeptide repeat (TPR)	d2fbna1	2fbn	0.76266

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13413	HTH_25	67.65
PF13464	DUF4115	18.63
PF13393	tRNA-synt_His	9.80
PF09976	TPR_21	1.96
PF00587	tRNA-synt_2b	0.98
PF01926	MMR_HSR1	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	96.08 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	79.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	22.55 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	3.92 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	22.55 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	3.92 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	22.55 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	3.92 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	22.55 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	3.92 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	2.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.98 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000893\|AP72_2010_repI_A001DRAFT_1052542	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300000955\|JGI1027J12803_100548380	All Organisms → cellular organisms → Bacteria → Proteobacteria	1445	Open in IMG/M
3300001593\|JGI12635J15846_10570942	All Organisms → cellular organisms → Bacteria → Proteobacteria	660	Open in IMG/M
3300002557\|JGI25381J37097_1089863	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300002558\|JGI25385J37094_10163886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	595	Open in IMG/M
3300002909\|JGI25388J43891_1042453	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300002916\|JGI25389J43894_1094410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	535	Open in IMG/M
3300004479\|Ga0062595_100631441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	843	Open in IMG/M
3300004633\|Ga0066395_10199334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1047	Open in IMG/M
3300005179\|Ga0066684_10202111	All Organisms → cellular organisms → Bacteria → Proteobacteria	1285	Open in IMG/M
3300005180\|Ga0066685_10103368	All Organisms → cellular organisms → Bacteria → Proteobacteria	1904	Open in IMG/M
3300005332\|Ga0066388_106095944	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300005332\|Ga0066388_107654718	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300005332\|Ga0066388_108679940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	505	Open in IMG/M
3300005434\|Ga0070709_10033879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3093	Open in IMG/M
3300005440\|Ga0070705_100258197	All Organisms → cellular organisms → Bacteria → Proteobacteria	1227	Open in IMG/M
3300005444\|Ga0070694_101521880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	566	Open in IMG/M
3300005444\|Ga0070694_101584663	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300005467\|Ga0070706_101136024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	719	Open in IMG/M
3300005602\|Ga0070762_10797943	All Organisms → cellular organisms → Bacteria → Proteobacteria	639	Open in IMG/M
3300005764\|Ga0066903_105946167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	640	Open in IMG/M
3300006797\|Ga0066659_10462566	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M
3300006797\|Ga0066659_11396698	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300009137\|Ga0066709_101447740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	995	Open in IMG/M
3300010048\|Ga0126373_12075899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	630	Open in IMG/M
3300010322\|Ga0134084_10125512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	842	Open in IMG/M
3300010335\|Ga0134063_10143294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1105	Open in IMG/M
3300010358\|Ga0126370_12481504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	516	Open in IMG/M
3300010360\|Ga0126372_12428628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	575	Open in IMG/M
3300010376\|Ga0126381_101809847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	881	Open in IMG/M
3300012361\|Ga0137360_11802932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	518	Open in IMG/M
3300012925\|Ga0137419_10608219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	879	Open in IMG/M
3300012929\|Ga0137404_10445688	All Organisms → cellular organisms → Bacteria → Proteobacteria	1148	Open in IMG/M
3300012971\|Ga0126369_13560283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	510	Open in IMG/M
3300014150\|Ga0134081_10133111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	805	Open in IMG/M
3300014322\|Ga0075355_1010468	All Organisms → cellular organisms → Bacteria → Proteobacteria	1800	Open in IMG/M
3300015374\|Ga0132255_105975108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	515	Open in IMG/M
3300016341\|Ga0182035_10325384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1269	Open in IMG/M
3300017657\|Ga0134074_1283691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	601	Open in IMG/M
3300017973\|Ga0187780_10064450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2522	Open in IMG/M
3300018058\|Ga0187766_10655408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	721	Open in IMG/M
3300018060\|Ga0187765_11017424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	569	Open in IMG/M
3300018085\|Ga0187772_10166584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1466	Open in IMG/M
3300020579\|Ga0210407_10630594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	834	Open in IMG/M
3300021151\|Ga0179584_1327796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	537	Open in IMG/M
3300021170\|Ga0210400_11168731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	621	Open in IMG/M
3300021180\|Ga0210396_10148905	All Organisms → cellular organisms → Bacteria → Proteobacteria	2103	Open in IMG/M
3300021180\|Ga0210396_10631337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	930	Open in IMG/M
3300021181\|Ga0210388_10508779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1057	Open in IMG/M
3300021402\|Ga0210385_10431795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	993	Open in IMG/M
3300021407\|Ga0210383_10688664	All Organisms → cellular organisms → Bacteria → Proteobacteria	879	Open in IMG/M
3300021432\|Ga0210384_10273231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1521	Open in IMG/M
3300021439\|Ga0213879_10124954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	734	Open in IMG/M
3300021478\|Ga0210402_11539263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	592	Open in IMG/M
3300021559\|Ga0210409_10383110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1260	Open in IMG/M
3300021560\|Ga0126371_10709947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1153	Open in IMG/M
3300021560\|Ga0126371_10916592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1020	Open in IMG/M
3300021953\|Ga0213880_10131475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	673	Open in IMG/M
3300024283\|Ga0247670_1060580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	685	Open in IMG/M
3300025906\|Ga0207699_10051301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2437	Open in IMG/M
3300025911\|Ga0207654_10142734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1529	Open in IMG/M
3300025916\|Ga0207663_11077321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	646	Open in IMG/M
3300025921\|Ga0207652_11062135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	710	Open in IMG/M
3300026301\|Ga0209238_1183334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	615	Open in IMG/M
3300026312\|Ga0209153_1085739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1166	Open in IMG/M
3300026322\|Ga0209687_1095600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	965	Open in IMG/M
3300026359\|Ga0257163_1055188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	635	Open in IMG/M
3300026552\|Ga0209577_10501332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	807	Open in IMG/M
3300027266\|Ga0209215_1059172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	535	Open in IMG/M
3300027591\|Ga0209733_1035850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1329	Open in IMG/M
3300028792\|Ga0307504_10128913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	837	Open in IMG/M
3300031469\|Ga0170819_14161716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	503	Open in IMG/M
3300031549\|Ga0318571_10291769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	611	Open in IMG/M
3300031561\|Ga0318528_10560513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	613	Open in IMG/M
3300031564\|Ga0318573_10670457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	558	Open in IMG/M
3300031573\|Ga0310915_10625068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	763	Open in IMG/M
3300031713\|Ga0318496_10543084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	642	Open in IMG/M
3300031723\|Ga0318493_10812487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	527	Open in IMG/M
3300031740\|Ga0307468_102147392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	539	Open in IMG/M
3300031753\|Ga0307477_10984994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	554	Open in IMG/M
3300031768\|Ga0318509_10818083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	515	Open in IMG/M
3300031792\|Ga0318529_10450910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	599	Open in IMG/M
3300031795\|Ga0318557_10481162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	570	Open in IMG/M
3300031796\|Ga0318576_10555843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	541	Open in IMG/M
3300031798\|Ga0318523_10045062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2056	Open in IMG/M
3300031805\|Ga0318497_10450812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	720	Open in IMG/M
3300031821\|Ga0318567_10689295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	580	Open in IMG/M
3300031823\|Ga0307478_11151491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	647	Open in IMG/M
3300031845\|Ga0318511_10185264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	921	Open in IMG/M
3300031893\|Ga0318536_10671082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	517	Open in IMG/M
3300031981\|Ga0318531_10343859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	674	Open in IMG/M
3300032010\|Ga0318569_10451513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	599	Open in IMG/M
3300032035\|Ga0310911_10319998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	894	Open in IMG/M
3300032065\|Ga0318513_10477740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	609	Open in IMG/M
3300032067\|Ga0318524_10618056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	571	Open in IMG/M
3300032205\|Ga0307472_100944721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	802	Open in IMG/M
3300032805\|Ga0335078_11959291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	629	Open in IMG/M
3300032892\|Ga0335081_10091995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4546	Open in IMG/M
3300032893\|Ga0335069_10859532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1017	Open in IMG/M
3300032955\|Ga0335076_11494087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	562	Open in IMG/M
3300033158\|Ga0335077_10139366	All Organisms → cellular organisms → Bacteria → Proteobacteria	2796	Open in IMG/M
3300033290\|Ga0318519_10721581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	610	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.04%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.06%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.59%
Loam	Environmental → Terrestrial → Soil → Loam	16.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.80%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	32.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014322	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailA_D1	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300024283	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AP72_2010_repI_A001DRAFT_10525422	3300000893	Forest Soil	DEEARVNFARALQLKPNFAEAQFQLANLEFDHGELAPARTGIDGFIGTYSATADLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV*
JGI1027J12803_1005483801	3300000955	Soil	HGEFAPARTGIDGFIGTYSATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV*
JGI12635J15846_105709422	3300001593	Forest Soil	GELAPARAGIDTFIGSYDATADLLLLGVRVARAQGDKIGALRYARRLQLDFPGSDQARALAELDHNPG*
JGI25381J37097_10898632	3300002557	Grasslands Soil	LRIRPNFAEAAYQLTELQFQHGELAPARAGIDAFIGSYEATADLLLLGVRVARAQGDRVGAQRYARRLQLDFPGTDQARALADLDRNPG*
JGI25385J37094_101638861	3300002558	Grasslands Soil	AAYQLTELQFQHGELAPARAGIDAFLGSYEATADLLLLGVRVARAQGDRLGAQRYARRLQLDFPGTDQARALAELERNPG*
JGI25388J43891_10424531	3300002909	Grasslands Soil	LRIRPNFAEAAYQLTELQFQHGELAPARAGIDAFIGSYEATADLLLLGVRVARAQGDRVGAQRYARRLQLDFPGTDQARALAELDRNPG*
JGI25389J43894_10944101	3300002916	Grasslands Soil	PARAGIDAFIGNYEATADLLLLGVRVARAQGDRIGAQRYARRLQLDFPGTDQAHALAELDRNPG*
Ga0062595_1006314412	3300004479	Soil	LEFHHGELPQARALLDAYFGNFGETPDLLLLAVRVARSQKDPLGAQRYARKLQLDYPGSDQTRALAALDHNPG*
Ga0066395_101993342	3300004633	Tropical Forest Soil	QLANLEFDHGELAPARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV*
Ga0066684_102021111	3300005179	Soil	ARAGIDAFIGSYEATADLLLLGVRVARAQGDRLGAQRYARRLQLDFPGTDQARALAELDRNPG*
Ga0066685_101033683	3300005180	Soil	RPNFAEAAYQLTELQFQHGELAPARAGIDAFIGNYEATADLLLLGVRVARAQGDRIGAQRYARRLQLDFPGTDQAHALAELDRNPG*
Ga0066388_1060959441	3300005332	Tropical Forest Soil	EAVYQLATLEFDHKEFALARTHVDGYLGAYTETADLLLLGVRVARAQKDPIAAQRYARKLQMNFPGTDQAKALASLDRNPG*
Ga0066388_1076547182	3300005332	Tropical Forest Soil	ALQLKPNFAEAQFQLANLEFDHGELAPARTGIDGFIGTYSATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV*
Ga0066388_1086799401	3300005332	Tropical Forest Soil	ARAGIEAFIGSFDATADLLLLAVRVARAQGDKIAAQRYARRLQLDFPGTDQARALAELDRNPG*
Ga0070709_100338791	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	HGELTPARNSIDGYIGTYNATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALEHNPG*
Ga0070705_1002581971	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	RALQLKPNFAEAQFQLANLEFDHGEFAPARTGIDGFIGTYSATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV*
Ga0070694_1015218801	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	GELPQARALLDAYFGNFGETPDLLLLAVRVARSQKDPLGAQRYARKLQLDYPGSDQTRALAALDHNPG*
Ga0070694_1015846631	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	NLEFARGELVPARQRIDAYLGSFEETPDLLLLGVRVARAQGDKMAAQRYARKLQLDFPSSDQARALAALDRG*
Ga0070706_1011360241	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VLQLADLEFHHGELPQARALLDAYFGNFGETPDLLLLAVRVARSQKDPLGAQRYARKLQLDYPGSDQTRALAALDHNPG*
Ga0070762_107979432	3300005602	Soil	KPNFSDAVLQLSDLEFQHNNLAQSRQLIDAYLGNFPATPDLLFLGVRVARAQKDAVAVQRYSRKLQLDFPGSDQTRALAGLDHNPG*
Ga0066903_1059461671	3300005764	Tropical Forest Soil	QLASLEFDHGQLAAARGRIDGYIGTFQATPDLLLLGVRVARAQRDVVAAQRFARRLQLDYPGSDQARALATLDKNRG*
Ga0066659_104625661	3300006797	Soil	DFGRALALRPNFAEAAYQLTELQFQHGELAPARAGIDAFIGNYEATADLLLLGVRVARAQGDRIGAQRYARRLQLDFPGTDQVRALAELDRNPG*
Ga0066659_113966982	3300006797	Soil	APARAAIEAFVGRYNATADLLLLAVRVARAQGDRAGAQHYARRLQLDFPGSDQVRALAELDRNPG*
Ga0066709_1014477401	3300009137	Grasslands Soil	ALALRPNFAEAAYQLTELQFQHGELAPARAGIDAFIGNYEATADLLLLGVRVARAQGDRIGAQRYARRLQLDFPGTDQAHALAELDRNPG*
Ga0126373_120758992	3300010048	Tropical Forest Soil	FQLANLEFDHGELAPARSGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV*
Ga0134084_101255122	3300010322	Grasslands Soil	GELAPARAGIDAFIGSYEATADLLLLGVRVARAQGDRLGAQRYARRLQLDFPGTDQARALAELDRNPG*
Ga0134063_101432941	3300010335	Grasslands Soil	QLTELQFQHGELAPARAGIDAFIGNYEATADLLLLGVRVARAQGDRIGAQRYARRLQLDFPGTDQAHALAELDRNPG*
Ga0126370_124815041	3300010358	Tropical Forest Soil	DEDARASFTKALQVRPSSAEAMFQFASLEFDHKEFGAARTHLDGYLGTYTETADLLLLGVRVARAQKDPVAAQRYARKLQMNFPGTDQAKALASLDRNPG*
Ga0126372_124286281	3300010360	Tropical Forest Soil	NLQFEHSEFAPARAGIDGFIGAYNATADLLLLGVRVARAQGDRLGAQRYARKLQLDFPGTDQARALAQLDRNPG*
Ga0126381_1018098472	3300010376	Tropical Forest Soil	QLLAARTRIDGYIGNYQETPDLLLLGVRVAHAQGDAVAEQRFARRLKLDYPGSDQARSLDHNPG*
Ga0137360_118029321	3300012361	Vadose Zone Soil	DEEARADFGRALAVRPNFAEAVYQLTELQFQHGELAPARAGIDAFIGSYEATADLLLLGVRVARAQGDRVGAQHYARRLQMDFPGTDQARALAELDRNPG*
Ga0137419_106082191	3300012925	Vadose Zone Soil	VRPNFAEAVYQLTELQFQHGELAPARAGIDAFIGSYEATADLLLLGVRVARAQGDKVGAQHYARRLQMDFPGTDQARALAELDHNRG*
Ga0137404_104456883	3300012929	Vadose Zone Soil	QFQHGELAPARAGIDAFIGSYEATADLLLLGVRVARAQGDKVGAQRYARRLQMDFPGTDQARALAELDHNSG*
Ga0126369_135602831	3300012971	Tropical Forest Soil	FDHKEFALARTHVDGYLGAYTETADLLLLGVRVARAQKDPVAAQRYARKLQMNFPGTDQAKALASLDRNPG*
Ga0134081_101331111	3300014150	Grasslands Soil	QLTELQFQHGELAPARAGIDAFIGSYEATADLLLLGVRVARAQGDRIGAQRYARRLQLDFPGTDQVRALAELDRNPG*
Ga0075355_10104683	3300014322	Natural And Restored Wetlands	AQSRALIDSFLGNFPQTADLLLLGVRVARAQGDALASQKYARKLQLDFPGSDQARSLAAADHPSG*
Ga0132255_1059751081	3300015374	Arabidopsis Rhizosphere	HGELVPARNGIDGYIGTYNETPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALDHNSG*
Ga0182035_103253843	3300016341	Soil	ARAGIDGFIGVYNATADLLLLGVRVARAQGDRVGAQHYARKLQLDFPGTDQARALAQLDHPG
Ga0134074_12836912	3300017657	Grasslands Soil	GELAPARASIEAFVGRYNATADLLLLAVRVARAQGDRAGAQRYARRLQLDFPGSDQARALAELDRNPG
Ga0187780_100644501	3300017973	Tropical Peatland	QARAGIDGFIGNFTATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPETPQARALAGLDHPG
Ga0187766_106554081	3300018058	Tropical Peatland	NLQFEHGELAPARAGIDGFMGTYNATADLLLLGVRVARAQGDRLGAQRYARKLQLDFPGTDQARALAQLDHNPG
Ga0187765_110174242	3300018060	Tropical Peatland	DHGELAPARNSIDGYIGTYNATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALEHNPG
Ga0187772_101665843	3300018085	Tropical Peatland	ANLQFEHGELGPARAGIDSFLGNFNATPDLLLLGVRVARAQGDRLAAQRYARKLQLDFPGTDQVRALAALDQNPG
Ga0210407_106305942	3300020579	Soil	KPSFVDAVVQLAELDMQHNNLPQARALIDAYLAHFGDNPDLLLLGVRVARAQKDQLGAQRYARKLQLNYPGTDQQRALAGLDHTG
Ga0179584_13277962	3300021151	Vadose Zone Soil	LVPARAGIDAFIGSYEATADLLLLGVRVARAQGDRVGPQHYARRLQMDFPGTDQARALAELDHNPG
Ga0210400_111687311	3300021170	Soil	LQFQHGELAPARASIDTFMGSFPETPDLLLLGVRVARAQGDRLAAQRYARKLQLDFPGTDQVRALAELDHNPG
Ga0210396_101489053	3300021180	Soil	YQLAELQMQHGDLTAARTTIDGFFGSFPATPDLLLLGVRVARAQGDRLGAQRYARKLQLDFPDTDQTRALAGLDHNPG
Ga0210396_106313372	3300021180	Soil	DFDHGQLAAARARIDTYIGTYDATPDLLLLGVRVTRAQGDAVAAQRYARRLQLDYPGSDQARALAALDKKRG
Ga0210388_105087792	3300021181	Soil	FQHNNLAQARQLIDTYLGNFPATPDLLFLGVRVARAQKDTVAVQRYSRKLQLDFPGSDQTRALAGLDRNPS
Ga0210385_104317951	3300021402	Soil	LEFQHGELPQSRALLDAYLGNFRETPDILLLAVRVARAQNDRVGAQRYARKLQMDFPGSDQVRALAGLDHNPG
Ga0210383_106886642	3300021407	Soil	SFQLATLQFQHGELVPARSSIDGFLGNNDPTPDLLLLGVRVARAQGDRMAAQRYARKLQLDFPGTEQARALANLDHNPG
Ga0210384_102732311	3300021432	Soil	GQLPAARSQMDVFLGSHEATADLLLLAVRVARAQGDRGAAQGFARRLQRDFAGTDQARELAALDHNPG
Ga0213879_101249542	3300021439	Bulk Soil	RAAAARAGIDGFIGTYNATADLLLLGVRVARAQGDRMAAQRYARKLQLDFPGTDQARALAALGPG
Ga0210402_115392631	3300021478	Soil	QLRPNYAEAAFQLATLDFDHGQLAAARTRIDGYLGTFQATPDLLLLGVRVARAQRDAVAAQRYARRLQLDYPGSDQARALAALDQNSG
Ga0210409_103831101	3300021559	Soil	ALQVRPNFAEAAFQLTELEFQHGELAPARAAIDAFIGSYDATADLLLLGVRVARAQGDKVGAQRYARRLQVDFPGTDQARALADLDHHSG
Ga0126371_107099473	3300021560	Tropical Forest Soil	FGSARTHIDGYLGTYTETADLLLLGVRVARAQKDPVAAQRYARKLQMNFPGTDQAKALAILERNPG
Ga0126371_109165922	3300021560	Tropical Forest Soil	QFERGEYPAARSGIDNFIATYQATPDLLLLGVRVAHAQGDRLAEQKYARKLKLDFPGTDQTRALAGLEHNPG
Ga0213880_101314751	3300021953	Exposed Rock	GELVPARNSIDGFIGTYNATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALASLEHNPG
Ga0247670_10605801	3300024283	Soil	RINFARALQLKPNFAEAQFQLANLEFDHGELAPARTGIDGFIGTYSATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0207699_100513011	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	ANLQFDHGELTPARNSIDGYIGTYNATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALEHNPG
Ga0207654_101427343	3300025911	Corn Rhizosphere	VLQLADLEFHHGELPQARALLDAYFGNFGETPDLLLLAVRVARSQKDPLGAQRYARKLQLDYPGSDQTRALAALDHNPG
Ga0207663_110773212	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	QFQLANLEFDHGEFGPARTGIDGFIGTYSATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0207652_110621351	3300025921	Corn Rhizosphere	QLATMEFARGELAPARKRIDAYLGTFEETPDLLLLGVRVARAQGDKMAAQRYARKLQLDFPSSDQARALAALDRG
Ga0209238_11833341	3300026301	Grasslands Soil	RPNFAEAAYQLTELQFQHGELAPARAGIDAFIGNYEATADLLLLGVRVARAQGDRIGAQRYARRLQLDFPGTDQAHALAELDRNPG
Ga0209153_10857391	3300026312	Soil	LEFQHGELAPARAAIEAFVGRYNATANLLLLAVRVARAQGDRAGAQRYARRLQLDFPGSDQARALAELDRNPG
Ga0209687_10956001	3300026322	Soil	PARAGIDAFIGNYEATADLLLLGVHVARAQGDRIGAQRYARRLQLDFPGTDQVRALAELDRNPG
Ga0257163_10551882	3300026359	Soil	QLTELEFQHGELVPARAGIDAFIGRYDATADLLLLGVRVARAQGDKIGAQRYARRLQVDFPGTDQARALAELDRNPG
Ga0209577_105013321	3300026552	Soil	LAPARAAIEAFVGRYNATADLLLLAVRVARAQGDRAGAQRYARRLQLDFPGSDQARALAELDRNPG
Ga0209215_10591722	3300027266	Forest Soil	TDLEFQHGELAPARNGIEAFIGRYTATADLLLLAVRVARAQGDRAAAQRYARRLQLDFPGSDQARALAELDRNPG
Ga0209733_10358501	3300027591	Forest Soil	EAAYQLTELEFQHGELAPARAGIDTFIGSYDATADLLLLGVRVARAQGDKIGALRYARRLQLDFPGSDQARALAELDHNPG
Ga0307504_101289131	3300028792	Soil	LEFQHGELAPARAGIDAFMGRYEATADLLLLGVRVARAQGDKIGAQRYARRLQVDFPGTDQARALAELDRNPG
Ga0170819_141617161	3300031469	Forest Soil	LPQARALIDAYLAHFGDNPDLLLLGVRVARAQKDQLGAQRYARKLQLNYPGTDQQRALAGLDHTG
Ga0318571_102917692	3300031549	Soil	FEHGELAPARAGIDGFIGTYNATADLLLLGVRVARAQGDRLGAQRYARKLQLDFPGTDQARALAQLDRNPG
Ga0318528_105605131	3300031561	Soil	INFARALQLKPNFAEAQFQLANLEFDHGELAPARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0318573_106704571	3300031564	Soil	FQLANLQFEHGELVPARTTIDSFIGTYNATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALDHNPG
Ga0310915_106250682	3300031573	Soil	AEAQFQLANLQFDHGELVPARTGIDGYISTYNATPDLLLLGVRVARAQNDRVAAQRYARKLQLDFPGTDQARALAALDHNPG
Ga0318496_105430841	3300031713	Soil	QLKPNFAEAQFQLANLEFDHGELAPARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0318493_108124872	3300031723	Soil	ANLQFEHGELAPARAGIDTFIGTYNATADLLLLGVRIARAQNDRLGAQRYARKLQLDFPGTDQARALAQLDHNPG
Ga0307468_1021473921	3300031740	Hardwood Forest Soil	FARGELAPARKRIDAYLGTFEETPDLLLLGVRVARAQGDKMAAQRYARKLQLDFPSSDQARALAALDRG
Ga0307477_109849941	3300031753	Hardwood Forest Soil	PARAGIDGFIGTYNATPDLLLLAVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALGPG
Ga0318509_108180831	3300031768	Soil	ELAPARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0318529_104509102	3300031792	Soil	ALQLKPNFAEAQFQLANLEFDHGELAPARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0318557_104811622	3300031795	Soil	APARAGIDTFIGTYNATADLLLLGVRIARAQNDRLGAQRYARKLQLDFPGTDQARALAQLDHNPG
Ga0318576_105558431	3300031796	Soil	FDHGELVPARTTIDSFIGTYNATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALDHNPG
Ga0318523_100450623	3300031798	Soil	NLQFDHGELVPARNGIDGFIGTYNATADLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALDHNAG
Ga0318497_104508122	3300031805	Soil	ELEVGELVPARNGIDGFIGTYNATADLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALDHNAG
Ga0318567_106892951	3300031821	Soil	QLANLQFEHGELVPARTTIDSFIGTYNATPDLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALDHNPG
Ga0307478_111514911	3300031823	Hardwood Forest Soil	ELAPARASIDAYMGSFTETADLLLLGVRVARAQGDRLAAQRYARKLQLDFPGTDQARALAELDHNPG
Ga0318511_101852642	3300031845	Soil	FAEAQFQLANLQFDHGELVPARNGIDGFIGTYNATADLLLLGVRVARAQGDRVAAQRYARKLQLDFPGTDQARALAALDHNAG
Ga0318536_106710821	3300031893	Soil	NFAEAQFQLANLQFEHGEFAPARAGIDSFIGTYNATADLLLLGVRVARAQGDRLGAQRYARKLQLDFPGTDQARALAQLDHNPG
Ga0318531_103438591	3300031981	Soil	ANLQFDHGELVPARTGIDGYISTYNATPDLLLLGVRVARAQNDRVAAQRYARKLQLDFPGTDQARALAALDHNPG
Ga0318569_104515132	3300032010	Soil	FAEAQFQLANLEFDHGELAPARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0310911_103199981	3300032035	Soil	NLQFDHGELAPARASIDSFIGNYNATADLLLLGVRIARAQGDRLGAQRYARKLQLDFPGTDQARALAQLDHPG
Ga0318513_104777401	3300032065	Soil	NFAEAQFQLANLEFDHGELAPARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV
Ga0318524_106180562	3300032067	Soil	LQFDHGEFAGARAGIDGFIGTYNATADLLLLAVRVARAQGDRLAAQRYARQLQLDFPGTDQARALAALERNPG
Ga0307472_1009447212	3300032205	Hardwood Forest Soil	HGELATARTQLDAFMGSYSATPDLLLLGVRVARAQGDKIAAQRYARRLQLDFPGTDQTRALAELDRNPG
Ga0335078_119592912	3300032805	Soil	DNLPQARQLIDAYLTNFGENPDLLLLGVRVARAQKDQVGAQRYARKLQMNYPGTDQQRALAELDHTG
Ga0335081_100919951	3300032892	Soil	LQFQHGELTQARAGIDGFIGNFTATPDLLLLGVRVARAQGDRLAAQRYARKLQLDFPNTPQTRALAGLDHPG
Ga0335069_108595322	3300032893	Soil	TLDFDHGQLTAARTRIDSYISTYDETPDLLLLGVRVARAQGDVLAAQRYSRRLQLDFPGSDQVRALAALDHHPG
Ga0335076_114940871	3300032955	Soil	ADLDLQHGDLTQARALVDAYLANFGENPDLLLLGVRVARAQKDQLGAQRYARKLQMNYPGTDQTRALAGLEHNPG
Ga0335077_101393661	3300033158	Soil	PQARALIDAYLTNFSENPDLLLLGVRVARAQNDALGAQRYARQLQMNYPGSDQTRALAGLEHNPG
Ga0318519_107215812	3300033290	Soil	PARTGIDGFIGTYTATPDLLLLGVRVAKAQGDRVAAQRYARKLQLDFPGTDQARALAALGPV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100762

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences