Metagenome Family F100696

Overview

Basic Information

• Family ID: F100696
• Family Type: Metagenome
• Number of Sequences: 102
• Average Sequence Length: 48 residues
• Representative Sequence: MAHFAKIENGVVREVIVVGNDDAPTEAAGQAFIASIGLDGEWVQTSYN
• Number of Associated Samples: 60
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 90.20 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 94.12 %
• Associated GOLD sequencing projects: 53
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (74.510 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (23.529 % of family members)
• Environment Ontology (ENVO): Unclassified (62.745 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (68.627 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 13.16%
  β-sheet: 28.95%
  Coil/Unstructured: 57.89%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.16.1.5: L-aminoacid/polyamine oxidase	d2ivda2	2ivd	0.62797
d.355.1.1: RplX-like	d2jxta1	2jxt	0.62621
d.58.4.9: DGPF domain (Pfam 04946)	d1s7ia1	1s7i	0.61375
d.375.1.1: NE1680-like	d2hfqa1	2hfq	0.60337
d.139.1.0: automated matches	d2v9ya2	2v9y	0.58637

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF06199	Phage_tail_2	0.98
PF13884	Peptidase_S74	0.98

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
All Organisms	root	All Organisms	25.49 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
Viruses	superkingdom	All Organisms → Viruses	22.55 %
cellular organisms	root	All Organisms → cellular organisms	2.94 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	6.86 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	6.86 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.98 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	6.86 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %
Candidatus Woesearchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota	0.98 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6.86 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.98 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	4.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.98 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.98 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.51 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	15.69 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %
Podoviridae sp. ctDWo9	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctDWo9	0.98 %
Candidatus Woesearchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	0.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003393|JGI25909J50240_1117304	Not Available	525
3300005805|Ga0079957_1246203	Not Available	832
3300006802|Ga0070749_10442889	Not Available	712
3300007216|Ga0103961_1282126	All Organisms → Viruses → Predicted Viral	1215
3300007344|Ga0070745_1132261	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Podoviridae sp. ctDWo9	956
3300007344|Ga0070745_1281995	Not Available	595
3300007541|Ga0099848_1074851	Not Available	1328
3300007541|Ga0099848_1084307	All Organisms → Viruses → Predicted Viral	1235
3300007541|Ga0099848_1178808	Not Available	771
3300007541|Ga0099848_1315709	Not Available	534
3300007542|Ga0099846_1090677	All Organisms → Viruses → Predicted Viral	1132
3300007542|Ga0099846_1092424	All Organisms → Viruses → Predicted Viral	1119
3300007542|Ga0099846_1258293	Not Available	603
3300007960|Ga0099850_1031388	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2317
3300007960|Ga0099850_1135373	Not Available	999
3300007960|Ga0099850_1237465	Not Available	706
3300009160|Ga0114981_10435354	Not Available	705
3300010370|Ga0129336_10319612	Not Available	859
3300010370|Ga0129336_10668619	Not Available	551
(restricted) 3300013126|Ga0172367_10193546	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1288
(restricted) 3300013126|Ga0172367_10242253	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1102
(restricted) 3300013126|Ga0172367_10254014	Not Available	1065
(restricted) 3300013126|Ga0172367_10564903	Not Available	616
(restricted) 3300013127|Ga0172365_10735493	Not Available	558
(restricted) 3300013128|Ga0172366_10758203	Not Available	566
(restricted) 3300013130|Ga0172363_10968351	Not Available	525
(restricted) 3300013131|Ga0172373_10284855	Not Available	1073
(restricted) 3300013131|Ga0172373_10412202	Not Available	839
(restricted) 3300013131|Ga0172373_10473340	Not Available	767
(restricted) 3300013131|Ga0172373_10748614	Not Available	573
(restricted) 3300013131|Ga0172373_10923136	Not Available	505
(restricted) 3300013132|Ga0172372_10320739	Not Available	1093
(restricted) 3300013132|Ga0172372_10360875	Not Available	1008
(restricted) 3300013132|Ga0172372_10830180	Not Available	571
(restricted) 3300013132|Ga0172372_10923428	Not Available	532
(restricted) 3300013133|Ga0172362_10922058	Not Available	577
3300013372|Ga0177922_10482316	Not Available	740
3300013372|Ga0177922_11102739	Not Available	914
(restricted) 3300014720|Ga0172376_10790629	Not Available	508
3300017701|Ga0181364_1017702	Not Available	1181
3300017723|Ga0181362_1027221	Not Available	1220
3300017723|Ga0181362_1033141	Not Available	1098
3300017723|Ga0181362_1049792	Not Available	872
3300017736|Ga0181365_1121791	Not Available	625
3300017736|Ga0181365_1164983	Not Available	521
3300017774|Ga0181358_1246556	Not Available	564
3300017777|Ga0181357_1163448	Not Available	814
3300017778|Ga0181349_1018725	All Organisms → Viruses → Predicted Viral	2837
3300017778|Ga0181349_1097876	Not Available	1101
3300017778|Ga0181349_1111623	Not Available	1014
3300017784|Ga0181348_1149473	Not Available	876
3300017784|Ga0181348_1153181	Not Available	861
3300017785|Ga0181355_1159117	Not Available	908
3300017785|Ga0181355_1176866	Not Available	850
3300017788|Ga0169931_10366875	All Organisms → Viruses → Predicted Viral	1085
3300017788|Ga0169931_10505969	Not Available	850
3300017788|Ga0169931_10846225	Not Available	582
3300019784|Ga0181359_1054325	All Organisms → Viruses → Predicted Viral	1541
3300020054|Ga0181594_10311940	Not Available	711
3300020074|Ga0194113_10216682	Not Available	1516
3300020074|Ga0194113_10396738	All Organisms → Viruses → Predicted Viral	1015
3300020074|Ga0194113_10522002	Not Available	850
3300020074|Ga0194113_10766002	Not Available	664
3300020074|Ga0194113_10950529	Not Available	577
3300020084|Ga0194110_10049741	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3798
3300020084|Ga0194110_10357863	Not Available	1004
3300020109|Ga0194112_10666865	Not Available	699
3300020109|Ga0194112_11084263	Not Available	501
3300020179|Ga0194134_10349722	Not Available	564
3300020183|Ga0194115_10015645	All Organisms → cellular organisms → Bacteria	6366
3300020183|Ga0194115_10246059	Not Available	849
3300020183|Ga0194115_10394331	Not Available	597
3300020196|Ga0194124_10392715	Not Available	638
3300020198|Ga0194120_10219598	All Organisms → Viruses → Predicted Viral	1029
3300020200|Ga0194121_10225211	Not Available	996
3300020200|Ga0194121_10470541	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	615
3300020204|Ga0194116_10004475	All Organisms → cellular organisms → Bacteria	15986
3300020220|Ga0194119_10345836	Not Available	981
3300020222|Ga0194125_10729657	Not Available	574
3300021092|Ga0194122_10373219	Not Available	724
3300021376|Ga0194130_10233787	Not Available	1061
3300021424|Ga0194117_10347109	Not Available	690
3300021959|Ga0222716_10071475	All Organisms → Viruses → Predicted Viral	2407
3300022063|Ga0212029_1023573	Not Available	839
3300022176|Ga0212031_1012266	All Organisms → Viruses → Predicted Viral	1238
3300022176|Ga0212031_1015672	All Organisms → Viruses → Predicted Viral	1134
3300022176|Ga0212031_1022070	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	996
3300022176|Ga0212031_1080277	Not Available	556
3300022179|Ga0181353_1043227	Not Available	1189
3300022190|Ga0181354_1235896	Not Available	528
3300022198|Ga0196905_1127626	Not Available	664
3300024509|Ga0255175_1090267	Not Available	541
3300025646|Ga0208161_1044622	All Organisms → Viruses → Predicted Viral	1461
3300025647|Ga0208160_1053801	All Organisms → Viruses → Predicted Viral	1136
3300025889|Ga0208644_1145205	All Organisms → Viruses → Predicted Viral	1096
3300027659|Ga0208975_1049428	Not Available	1295
3300027808|Ga0209354_10380917	Not Available	551
3300029932|Ga0119933_1036799	Not Available	618
3300029932|Ga0119933_1043805	All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	551
3300031999|Ga0315274_11506746	Not Available	639
3300033981|Ga0334982_0093420	Not Available	1594
3300034072|Ga0310127_079725	All Organisms → Viruses → Predicted Viral	1482

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.02%
Terrestrial	Environmental → Terrestrial	0.98%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	73.53%
Marine	Environmental → Aquatic → Marine	25.49%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.98%

Type

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	50.00%
Coastal	Environmental → Aquatic → Marine → Coastal	23.53%
Lentic	Environmental → Aquatic → Freshwater → Lentic	20.59%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.96%
River	Environmental → Aquatic → Freshwater → River	0.98%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.98%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	45.10%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	23.53%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	20.59%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.98%

Habitat

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	23.53%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	21.57%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	19.61%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	17.65%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	4.90%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.96%
Drinking Water Treatment Plant	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant	1.96%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	1.96%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.98%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.98%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.98%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.98%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.98%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	0.98%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300003393	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD	Environmental
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental
3300007216	Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface and Bottom layer) 16 sequencing projects	Environmental
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental
3300009160	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG	Environmental
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental
3300013126 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10m	Environmental
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental
3300013128 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm	Environmental
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental
3300013131 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10m	Environmental
3300013132 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5m	Environmental
3300013133 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2	Environmental
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental
3300014720 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35m	Environmental
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental
3300017788	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L	Environmental
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental
3300020054	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413BT metaG (spades assembly)	Environmental
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental
3300020179	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m	Environmental
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental
3300020196	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m	Environmental
3300020198	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65m	Environmental
3300020200	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015020 Mahale Deep Cast 50m	Environmental
3300020204	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface	Environmental
3300020220	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100m	Environmental
3300020222	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m	Environmental
3300021092	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10m	Environmental
3300021376	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface	Environmental
3300021424	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surface	Environmental
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental
3300022179	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.N	Environmental
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental
3300022198	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v3)	Environmental
3300024509	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8d	Environmental
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental
3300029932	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201207A	Environmental
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental
3300034072	Fracking water microbial communities from deep shales in Oklahoma, United States - MC-3-A	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25909J50240_11173042	3300003393	Freshwater Lake	MAHFAKIENGIVREVIVVSNDNAPTEAAGQAFIASIGLAGVWIQTSYNNNNVEG
Ga0079957_12462032	3300005805	Lake	MAHFAKVENGVVQQVIVVSNDDAPTEVAGQEFLASLGLN
Ga0070749_104428891	3300006802	Aqueous	MAHFAKVENGVVREVIVVGNDYAPTEAAGKQFIASIGLAGEWVQTSYNNNPVEGQDRGKF
Ga0103961_12821263	3300007216	Freshwater Lake	MAHFAKIENGIVREVIVIGNDDAPTEAAGKQFIANIGLTGEWVQTSY
Ga0070745_11322611	3300007344	Aqueous	VAHFAEIKNGIVQQVIVVSNGDAPTEAAGKAFIASI
Ga0070745_12819952	3300007344	Aqueous	MAHFAKIENGIVREVLVIGNDDAPTEAAGKAFIASIGLAGEWVQTSYNNNPVEG
Ga0099848_10748513	3300007541	Aqueous	MAHFAKVQNGIVQQVIVVSNDDAPTEAAGQTFLASLGLAGEWVQTSYN
Ga0099848_10843071	3300007541	Aqueous	MAHFAKVDNGIVSQVIVVSNDDAPTEAAGKAFIASIGLAGEWVQTSYNSNPVEGQDR
Ga0099848_11788081	3300007541	Aqueous	MAHFAKIENGIVREVIVIGNDDAPTEAAGKQFIANIGLAGEWVQTSYN
Ga0099848_13157092	3300007541	Aqueous	MAHFAKIENGIVREVLVIGNNDAPTEAAGKAFIASIGLAGEWVQTSYN
Ga0099846_10906771	3300007542	Aqueous	MAHFAKIENGIVREVIVIGNDDAPTEAAGKAFIASIGLAGEWVQTSYNNNPVEGQDRGKYAGIG
Ga0099846_10924241	3300007542	Aqueous	MAHFAKVVDGTVREVLVIGNDDAPTEAAGKAFIASIGLDGEWVQTSYNSN
Ga0099846_12582931	3300007542	Aqueous	MAHFAQISNGIVSQVIVVSNDDAPTEAAGKAFIASIGLAGEWV
Ga0099850_10313881	3300007960	Aqueous	MAHFAKVQNGIVQQVIVVSNDDASTEAAGQTFLASLGLAGEWVRTSYNNN
Ga0099850_11353731	3300007960	Aqueous	MAHFAKVVDGTVREVLVIGNDDAPTEAAGKAFIASIGLDGEWVQTSYN
Ga0099850_12374651	3300007960	Aqueous	MAHFAQISNGIVSQVIVIGNDDAPTEAAGKAFIASIGLAGE
Ga0114981_104353541	3300009160	Freshwater Lake	MAHFAKVNDENIVEQVIVVSNDDAPNEKAGKEFIASLGI
Ga0129336_103196121	3300010370	Freshwater To Marine Saline Gradient	MAHFARIQDGKVAQVIVVSNDDAPTEIAGKEFIASLGLTGEWVQTSYNNNPIEGASRGK
Ga0129336_106686192	3300010370	Freshwater To Marine Saline Gradient	MAHFAKVENGIVREVIVVGNADAPTEAAGQAFIAACGIAGEWVQTSYNSN
(restricted) Ga0172367_101935461	3300013126	Freshwater	MAHFAKIENGVVQTVIVVSNDDAPTEAAGQAFIASVGLDGEWVQT
(restricted) Ga0172367_102422532	3300013126	Freshwater	VAHFAHIVDGIVQTVIVVSNDDAPTEAAGQAFIASIGLSGEWVQTSYNNNPVEG
(restricted) Ga0172367_102540142	3300013126	Freshwater	MAHFAKIENGVVREVIVVGNDDAPTEAAGQAFIASIGLDGKWVQTSYHN
(restricted) Ga0172367_105649032	3300013126	Freshwater	MAHFAKIENGVVREVIVVGNDDAPTEAAGQAFIASVGLDGEWVQTSYNNNPV
(restricted) Ga0172365_107354931	3300013127	Sediment	MAHFARVENGSVTQVIVVSNDDAPTEAAGQAFIASIGLDGEWVQT
(restricted) Ga0172366_107582031	3300013128	Sediment	MAHFAKIENGVVREIILVGNDDAPTEAAGQAFIASIGLDGEWVQTSYNNNPVE
(restricted) Ga0172363_109683511	3300013130	Sediment	MAHFAKIENGIVREVIVIGNDDAPTEAAGQAFIVFIGLDGEWVQTSYHNNPV
(restricted) Ga0172373_102848552	3300013131	Freshwater	MAHFAKIENGVVREVIVVGNDDAPTEAAGQAFIASIGLDGEWVQTSYN
(restricted) Ga0172373_104122021	3300013131	Freshwater	MAHFAHIVDGIVQRVIVVSNDVAPTEAAGQAFIASIGLDGEWVQTSYNN
(restricted) Ga0172373_104733402	3300013131	Freshwater	MAHFAKIENGIVREVIVVGNDDAPTEAAGQAFIASIGLDGEWVMTSYNN
(restricted) Ga0172373_107486142	3300013131	Freshwater	MAHFAHIVDGIVQTVIVVSNDDAPDEATGQAFIESIGLNGEWVQTSY
(restricted) Ga0172373_109231362	3300013131	Freshwater	MAHFAKIENGVVREVIVIGNDDAPTEAAGQAFIASIGLDGEWVQTSYNNNPIEGASRGKY
(restricted) Ga0172372_103207391	3300013132	Freshwater	MAHFAKIENGVVREVIVVGNDNAPTEAAGQTFIASIGLDGEWVQTSYNNNPIEGASRGKYAGI
(restricted) Ga0172372_103608751	3300013132	Freshwater	MAHFAKIDNGIVQQVIVVSNDDAPTEAAGQAFIASTGLT
(restricted) Ga0172372_108301802	3300013132	Freshwater	MAHFARIDNGVVREVIVVGNDNAPTEAAGQAFIASIGLDGEWVQTSY
(restricted) Ga0172372_109234281	3300013132	Freshwater	MAHFAKIENSIVQQVIVVSNDDAPDEASGQEFLASIGISGEWVQTSYNNNPIEG
(restricted) Ga0172362_109220582	3300013133	Sediment	MAHFAKIENGVVREVIVIGNDNAPTEAAGQAFITSIGLDGEWVQTSYNSNPVGEP
Ga0177922_104823161	3300013372	Freshwater	MAHFAKINNNIVVEVIVVSNDDAPTEEVGQAFIAS
Ga0177922_111027394	3300013372	Freshwater	MAHFAKIENNVVREVIVVGNDDAPTEAAGQAFIASIGLLGEWV
(restricted) Ga0172376_107906291	3300014720	Freshwater	MAHFARIDNGVVREVIVVGNDNAPTEAAGQAFIASIGLDGEWVQTSYN
Ga0181364_10177022	3300017701	Freshwater Lake	MAHFAKVENGVVREVIVIGNDDAPTEAAGQAFIASIGLAGDWIQTSYNNNP
Ga0181362_10272212	3300017723	Freshwater Lake	MAHFAKVENGVVREVIVIGNDDAPDEATGQAFIASIGLTGDWV
Ga0181362_10331411	3300017723	Freshwater Lake	MAHFAKVDNGMVSQVIVVSNTDAPDEATGQAFIASLGLAGTWVQTSYNNNPIEGASRGKY
Ga0181362_10497921	3300017723	Freshwater Lake	MAHFAKIENGIVREVIVVSNDNAPTEAAGQAFIASIGLAGVWIQTSYNNNNV
Ga0181365_11217911	3300017736	Freshwater Lake	MAHFAKVENGVVREVIVIGNDDAPDEATGQAFIASIGLTGDWVQTSYNNNPVEGASRGKY
Ga0181365_11649832	3300017736	Freshwater Lake	VAHFAKVDNGIVQTVIVVSNDDAPDEATGQAFIASIGLEGDWVQ
Ga0181358_12465561	3300017774	Freshwater Lake	MAHFAKVENGVVREVIVIGNDDAPDEATGQQFIASIGLTGNWIQTSYNNNPIE
Ga0181357_11634481	3300017777	Freshwater Lake	MAHFAKIENGLVQQVIVVSNDDAPTETAGQAFIESLGLVGEWVQTSYNNN
Ga0181349_10187251	3300017778	Freshwater Lake	MAHFAKIENGVVREVIVVGNDDAPTEAAGKAFIASIGLAGEWVQTSYNANFRSKYA
Ga0181349_10978762	3300017778	Freshwater Lake	MAHFAKIENTKVVNVIVVANDYASNETEGQAFIASIGLDGVWVQTSYNN
Ga0181349_11116231	3300017778	Freshwater Lake	VAHFAKVQNGIVQTVIVVSNDDAPDEATGQAFIASLGLAGEWVQTSYNNNPVE
Ga0181348_11494731	3300017784	Freshwater Lake	MAHFAKIENGLVQQVIVVSNDDAPTETAGQAFIESLGLVGEWVQTSYNNNPIEG
Ga0181348_11531812	3300017784	Freshwater Lake	MAHFAKIENGLVQQVIVVSNDDAPTETAGQAFIESLG
Ga0181355_11591172	3300017785	Freshwater Lake	MAHFAKVENGVVREVIVIGNDDAPDEATGQAFIASIGLT
Ga0181355_11768662	3300017785	Freshwater Lake	MAHFAKIENGLVRQVIVVSNDDAPTETDGQEFIALLGLTGEWVQTSYNN
Ga0169931_103668751	3300017788	Freshwater	MAHFAKIENGIVREVIVIGNDDCAGGDFPESEAAGQAFIASIGLSGE
Ga0169931_105059691	3300017788	Freshwater	MAHFAKIENGIVREVIVVSNDNAPTEAAGQAFIASLGLDGEWVQT
Ga0169931_108462251	3300017788	Freshwater	MAHFAQIIDGIVAQVIVVHNNDAPTEADGKAFIASLGLAGEWVQTSYNNNPIEGASRGK
Ga0181359_10543251	3300019784	Freshwater Lake	MAHFAKVENGVVREVIVIGNDDAPTEAAGQAFIASIGLAGDWIQTSYNNNPIEGASRG
Ga0181594_103119402	3300020054	Salt Marsh	MAHFALIDDNNMVQEVIVVSDTDAPTEEAGQAFIASIGLTGTWMQT
Ga0194113_102166821	3300020074	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIG
Ga0194113_103967382	3300020074	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLSGEWV
Ga0194113_105220022	3300020074	Freshwater Lake	VAHFARVENGIVQTVIVVGNDDAPTEAAGKAFIASLGLDGEWVQTSYNSNPV
Ga0194113_107660022	3300020074	Freshwater Lake	MAHFARIENGIVREVNVVHNNDAPTEADGKAFLASLGLAGEWVQTSYNNNFR
Ga0194113_109505291	3300020074	Freshwater Lake	VAHFARVENGIVREVIVVGNDNAPTEAAGKAFIASIGLSGE
Ga0194110_100497415	3300020084	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFLASIGLSGEWVQTSYNSNPIEGQDR
Ga0194110_103578632	3300020084	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLDG
Ga0194112_106668652	3300020109	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLDGEWVQTSYNS
Ga0194112_110842632	3300020109	Freshwater Lake	MAHFAQIQNGIVQRVIVVSNDDAPNEAAGQAFLASIGLVGEWIQTSYNNNPIEGASRGKY
Ga0194134_103497222	3300020179	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLDGEWVQTSYNNNPVEGASRGKY
Ga0194115_100156451	3300020183	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGL
Ga0194115_102460591	3300020183	Freshwater Lake	MAHFAKIENGVVREVIVIGNDDAPTEAAGKAFIASIG
Ga0194115_103943312	3300020183	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGQAFIASI
Ga0194124_103927151	3300020196	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLDGEWVQTSYK
Ga0194120_102195982	3300020198	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLSGEWVQTSYNS
Ga0194121_102252112	3300020200	Freshwater Lake	MAHFAKIENGVVREVIVVGNDDAPTEAAGKAFIASIGLDGEWVMTS
Ga0194121_104705412	3300020200	Freshwater Lake	MAHFAKIENGVVREVIVVGNEWCAGGDFPESEAAGQAFIASIGLSGEWRQTS
Ga0194116_100044751	3300020204	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLSGEWVQTS
Ga0194119_103458361	3300020220	Freshwater Lake	MAHFAKIENGVVREVIVVGNDNAPTEAAGKAFIASIGLDGEW
Ga0194125_107296572	3300020222	Freshwater Lake	MAHFAKVENGIVQQVIVVSNDDAPNEATGQAFLASIGLVGEWVHTCY
Ga0194122_103732192	3300021092	Freshwater Lake	MAHFAKIENGVVRDVIVVSNDDAPTEAAGKAFIASIGLDGEWVQTSYNSNP
Ga0194130_102337871	3300021376	Freshwater Lake	MAHFAKIENGIVREVIVVGNDDAPTEAAGQTFIASIGLDGEWVQTSYNNNPVEGASRG
Ga0194117_103471092	3300021424	Freshwater Lake	VAHFARVENGIVREVIVVGNDNAPTEAAGKAFIASIGLSGEWVQTSYNSNPIEGQDRGKYAGI
Ga0222716_100714756	3300021959	Estuarine Water	MAHFAKVENGVVREVLVIGNDDAPTEAAGKQFIASIGLA
Ga0212029_10235732	3300022063	Aqueous	MAHFAKIENGIVREVIVIGNDDAPTEAAGKAFIASIGLAGEWVQTSYNSNPIEG
Ga0212031_10122663	3300022176	Aqueous	MAHFAKVDNGVVSQVIVVSNDDAPTEAAGKAFIASIGLDGEWVQTSF
Ga0212031_10156721	3300022176	Aqueous	MAHFAKVENGVVREVIVVGNDYAPTEAAGKQFIASIGLAGEWVQTSYNNNPVE
Ga0212031_10220702	3300022176	Aqueous	MAHFAKIENGIVQQVIVVSNDDAPTEAAGKQFIANIGLAGEW
Ga0212031_10802772	3300022176	Aqueous	MAHFAKVENNIVQQVIVVSNDDAPTEVAGQTFLASLGLTGEWVQTF
Ga0181353_10432273	3300022179	Freshwater Lake	MAHFAKVENGVVQQVIVVSNDDAPTEADGQAFIASLGLDGEWVQTSYNNNPI
Ga0181354_12358962	3300022190	Freshwater Lake	MAHFAKVENGVVREVIVIGNDDAPDEATGQAFIASIGLTG
Ga0196905_11276262	3300022198	Aqueous	MAHFAKIENGIVREVIVIGNNDAPTEAAGKAFIASIGLAGEWVQTSYNNNPVEGQDRGK
Ga0255175_10902671	3300024509	Freshwater	MAHFAKVENGIVREVIVVGNADAPTEAAGQAFIAACGIAGEWVQ
Ga0208161_10446221	3300025646	Aqueous	MAHFAKIENGIVREVIVIGNDDAPTEAAGKQFIANIGLAGEWVQT
Ga0208160_10538011	3300025647	Aqueous	MAHFAKIENGIVREVIVISNDDALTEAAGKQFIANIGLAGEWVQTSYNNNPVEGQD
Ga0208644_11452052	3300025889	Aqueous	MAHFAKIENGIVREVIVISNDDAPTEAAGKQFIANIGLAGEWVQTSYNSNPIEGAD
Ga0208975_10494282	3300027659	Freshwater Lentic	VAHFAKVDNGIVSQVIVVSNDDAPDEATGQQFIASIGLAGDWIQTS
Ga0209354_103809171	3300027808	Freshwater Lake	MAHFAKIDNGTVTQVIAVSNENAPTEEAGQAFIASLGIAGEWKQTSYNTYRKY
Ga0119933_10367991	3300029932	Drinking Water Treatment Plant	MAHFAKVDNGIVSQVIVVSNDDAPTEAAGKAFIASIGLAGEWVQ
Ga0119933_10438052	3300029932	Drinking Water Treatment Plant	MAHFAQVENGVVRQVIVVSNDDAPTEAAGKAFIASIGLSGEWVQT
Ga0315274_115067462	3300031999	Sediment	MAHFAKVENGVVREIIVIGNDDAPTEEAGQAFIASIGLDGD
Ga0334982_0093420_1451_1594	3300033981	Freshwater	MAHFAQVADGKVQQVIVVSNEDAPDEATGKAFIASIGLAGDWVQTSYN
Ga0310127_079725_1_168	3300034072	Fracking Water	MAHFAKVENGIVREVIVVGNADAPTEAAGKAFIAACGIAGEWVQTSYNSNFRGKFA