Metagenome / Metatranscriptome Family F100680

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100680
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	53 residues
Representative Sequence	MAIGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEERP
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.97 %
% of genes near scaffold ends (potentially truncated)	87.25 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.549 % of family members)
Environment Ontology (ENVO)	Unclassified (30.392 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 31.25% Coil/Unstructured: 68.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08713	DNA_alkylation	6.86
PF00106	adh_short	4.90
PF01546	Peptidase_M20	3.92
PF00440	TetR_N	2.94
PF03061	4HBT	2.94
PF08281	Sigma70_r4_2	1.96
PF01638	HxlR	1.96
PF07690	MFS_1	1.96
PF13006	Nterm_IS4	0.98
PF07885	Ion_trans_2	0.98
PF00355	Rieske	0.98
PF00313	CSD	0.98
PF13463	HTH_27	0.98
PF03704	BTAD	0.98
PF04012	PspA_IM30	0.98
PF12697	Abhydrolase_6	0.98
PF01878	EVE	0.98
PF02558	ApbA	0.98
PF01740	STAS	0.98
PF01636	APH	0.98
PF00903	Glyoxalase	0.98
PF05598	DUF772	0.98
PF01035	DNA_binding_1	0.98
PF12680	SnoaL_2	0.98
PF00108	Thiolase_N	0.98
PF06965	Na_H_antiport_1	0.98
PF12802	MarR_2	0.98
PF04392	ABC_sub_bind	0.98
PF01790	LGT	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG4912	3-methyladenine DNA glycosylase AlkD	Replication, recombination and repair [L]	6.86
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.96
COG1842	Phage shock protein A	Transcription [K]	1.96
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.98
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.98
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1673	Predicted RNA-binding protein, contains PUA-like EVE domain	General function prediction only [R]	0.98
COG2947	Predicted RNA-binding protein, contains EVE domain	General function prediction only [R]	0.98
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.98
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.98
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.98
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.98
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.02 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	27.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.92 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	1.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.96 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.94 %
unclassified Candidatus Dormibacteraeota	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota	1.96 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.94 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Haloferacales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Microbulbiferaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.96 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	0.98 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.98 %
Haloferacaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Microbulbifer	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.96 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.98 %
Halobellus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halobellus	0.98 %
Microbulbifer variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer variabilis	0.98 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.96 %
unclassified Kribbella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella	0.98 %
Halobellus captivus	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halobellus → Halobellus captivus	0.98 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.98 %
Microbulbifer variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer variabilis	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.96 %
Kribbella sp. VKM Ac-2527	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2527	0.98 %
Halobellus captivus	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halobellus → Halobellus captivus	0.98 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.98 %
Microbulbifer variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer variabilis	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10698589	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300004092\|Ga0062389_104179167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	543	Open in IMG/M
3300005332\|Ga0066388_102284000	Not Available	978	Open in IMG/M
3300005332\|Ga0066388_102763371	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300005332\|Ga0066388_107949708	Not Available	530	Open in IMG/M
3300005436\|Ga0070713_100214175	Not Available	1745	Open in IMG/M
3300005445\|Ga0070708_100027390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	4889	Open in IMG/M
3300005554\|Ga0066661_10668514	Not Available	611	Open in IMG/M
3300005602\|Ga0070762_11226248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	519	Open in IMG/M
3300005610\|Ga0070763_10392883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	779	Open in IMG/M
3300005764\|Ga0066903_102756290	Not Available	953	Open in IMG/M
3300006059\|Ga0075017_101287497	All Organisms → cellular organisms → Bacteria → Terrabacteria group	573	Open in IMG/M
3300006804\|Ga0079221_10347202	Not Available	894	Open in IMG/M
3300006804\|Ga0079221_11012324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	625	Open in IMG/M
3300006871\|Ga0075434_100633509	Not Available	1088	Open in IMG/M
3300009088\|Ga0099830_10258923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → unclassified Kribbella → Kribbella sp. VKM Ac-2527	1379	Open in IMG/M
3300009090\|Ga0099827_10792781	Not Available	820	Open in IMG/M
3300009098\|Ga0105245_12609563	Not Available	558	Open in IMG/M
3300009520\|Ga0116214_1174048	Not Available	805	Open in IMG/M
3300009523\|Ga0116221_1332104	Not Available	659	Open in IMG/M
3300009525\|Ga0116220_10252854	Not Available	769	Open in IMG/M
3300009700\|Ga0116217_10113600	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1839	Open in IMG/M
3300010047\|Ga0126382_12259470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	525	Open in IMG/M
3300010047\|Ga0126382_12259885	Not Available	525	Open in IMG/M
3300010359\|Ga0126376_11501480	Not Available	703	Open in IMG/M
3300010376\|Ga0126381_103534883	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halobellus → Halobellus captivus	613	Open in IMG/M
3300010379\|Ga0136449_101512970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1026	Open in IMG/M
3300010379\|Ga0136449_101982865	Not Available	861	Open in IMG/M
3300010396\|Ga0134126_12111870	Not Available	615	Open in IMG/M
3300012189\|Ga0137388_10684143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	953	Open in IMG/M
3300012202\|Ga0137363_11319223	Not Available	610	Open in IMG/M
3300012206\|Ga0137380_10552383	Not Available	1011	Open in IMG/M
3300012207\|Ga0137381_10643864	Not Available	922	Open in IMG/M
3300012209\|Ga0137379_10017648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6846	Open in IMG/M
3300012683\|Ga0137398_10722031	Not Available	693	Open in IMG/M
3300012927\|Ga0137416_11402408	Not Available	633	Open in IMG/M
3300012930\|Ga0137407_11654083	Not Available	610	Open in IMG/M
3300014657\|Ga0181522_10378086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	846	Open in IMG/M
3300014657\|Ga0181522_10429774	Not Available	792	Open in IMG/M
3300015242\|Ga0137412_10143062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	1930	Open in IMG/M
3300015373\|Ga0132257_102411121	Not Available	683	Open in IMG/M
3300016341\|Ga0182035_11950026	Not Available	533	Open in IMG/M
3300016357\|Ga0182032_10766386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	814	Open in IMG/M
3300016387\|Ga0182040_11631891	Not Available	550	Open in IMG/M
3300017924\|Ga0187820_1037034	Not Available	1284	Open in IMG/M
3300017928\|Ga0187806_1254884	All Organisms → cellular organisms → Bacteria → Terrabacteria group	608	Open in IMG/M
3300017932\|Ga0187814_10233241	Not Available	695	Open in IMG/M
3300017972\|Ga0187781_10530391	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300017973\|Ga0187780_10458044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	908	Open in IMG/M
3300017974\|Ga0187777_10386791	All Organisms → cellular organisms → Bacteria → Terrabacteria group	966	Open in IMG/M
3300018086\|Ga0187769_10858197	Not Available	686	Open in IMG/M
3300020583\|Ga0210401_10425173	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300021088\|Ga0210404_10209187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1049	Open in IMG/M
3300021476\|Ga0187846_10016941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3421	Open in IMG/M
3300022840\|Ga0224549_1009280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1450	Open in IMG/M
3300024227\|Ga0228598_1084956	Not Available	636	Open in IMG/M
3300025910\|Ga0207684_10082695	All Organisms → cellular organisms → Bacteria	2735	Open in IMG/M
3300025926\|Ga0207659_10646638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	903	Open in IMG/M
3300025928\|Ga0207700_10172548	Not Available	1805	Open in IMG/M
3300027045\|Ga0207726_1043229	Not Available	614	Open in IMG/M
3300027648\|Ga0209420_1126794	Not Available	711	Open in IMG/M
3300027676\|Ga0209333_1066562	Not Available	989	Open in IMG/M
3300027825\|Ga0209039_10394032	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300027846\|Ga0209180_10279255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	959	Open in IMG/M
3300027889\|Ga0209380_10888853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300028789\|Ga0302232_10029996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2981	Open in IMG/M
3300028801\|Ga0302226_10193556	Not Available	872	Open in IMG/M
3300028806\|Ga0302221_10157468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	999	Open in IMG/M
3300028877\|Ga0302235_10032770	All Organisms → cellular organisms → Bacteria	2642	Open in IMG/M
3300030618\|Ga0311354_10151538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2529	Open in IMG/M
3300031057\|Ga0170834_112868765	Not Available	576	Open in IMG/M
3300031474\|Ga0170818_104534586	Not Available	515	Open in IMG/M
3300031545\|Ga0318541_10383167	Not Available	786	Open in IMG/M
3300031682\|Ga0318560_10213296	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300031736\|Ga0318501_10489719	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300031751\|Ga0318494_10103214	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300031751\|Ga0318494_10441897	All Organisms → cellular organisms → Bacteria → Terrabacteria group	756	Open in IMG/M
3300031764\|Ga0318535_10058798	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1623	Open in IMG/M
3300031769\|Ga0318526_10373240	Not Available	583	Open in IMG/M
3300031781\|Ga0318547_10663331	Not Available	648	Open in IMG/M
3300031782\|Ga0318552_10064236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1763	Open in IMG/M
3300031782\|Ga0318552_10667919	Not Available	530	Open in IMG/M
3300031819\|Ga0318568_10048284	Not Available	2447	Open in IMG/M
3300031846\|Ga0318512_10462376	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031890\|Ga0306925_10651297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1107	Open in IMG/M
3300031890\|Ga0306925_10922899	Not Available	896	Open in IMG/M
3300031896\|Ga0318551_10380479	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300031897\|Ga0318520_10758430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	608	Open in IMG/M
3300031946\|Ga0310910_10244815	Not Available	1401	Open in IMG/M
3300031981\|Ga0318531_10366110	Not Available	652	Open in IMG/M
3300032001\|Ga0306922_10790228	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300032008\|Ga0318562_10812078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Microbulbiferaceae → Microbulbifer → Microbulbifer variabilis	535	Open in IMG/M
3300032035\|Ga0310911_10436514	Not Available	758	Open in IMG/M
3300032060\|Ga0318505_10063110	Not Available	1616	Open in IMG/M
3300032068\|Ga0318553_10338015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	788	Open in IMG/M
3300032090\|Ga0318518_10303236	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300032160\|Ga0311301_11546471	Not Available	813	Open in IMG/M
3300032261\|Ga0306920_100297094	All Organisms → cellular organisms → Bacteria	2406	Open in IMG/M
3300032261\|Ga0306920_102191403	Not Available	769	Open in IMG/M
3300032261\|Ga0306920_103571610	Not Available	573	Open in IMG/M
3300032261\|Ga0306920_104068559	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.10%
Host-Associated	Host-Associated	4.90%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.27%
Aquatic	Environmental → Aquatic	8.82%
Plants	Host-Associated → Plants	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.41%
Freshwater	Environmental → Aquatic → Freshwater	7.84%
Peat	Environmental → Terrestrial → Peat	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Sediment	Environmental → Aquatic → Sediment	0.98%
Cave	Environmental → Terrestrial → Cave	0.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.76%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.88%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.31%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.51%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.55%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300022840	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 1-5	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027045	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_106985892	3300004080	Bog Forest Soil	DGRDLLARGTVIHRGRSMAIAISEVFNADGKKAAVATGSTVILPGRPATVTTELTLPQLDESEDDEERR*
Ga0062389_1041791672	3300004092	Bog Forest Soil	TSDVFDADGKKVAVATGSAVVLPGGPATVTTELTLPDLAGSEDDKERP*
Ga0066388_1022840002	3300005332	Tropical Forest Soil	GKKVAVATGSAVILPGRPATVTRELTLPDLGAGEDDRERRP*
Ga0066388_1027633711	3300005332	Tropical Forest Soil	VVPGQFIPAIGTSEVFDADGKKVAVATGSAVILPGRPATVTRELTLPDLGAGEDDRER
Ga0066388_1079497082	3300005332	Tropical Forest Soil	GKKVAVATGSAVILPGRPATVTRELTLPDLGAGEDDRERP*
Ga0070713_1002141751	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AIGTSDVFDADGKKVAVATGSSLILPGRPATVTTELTLPPLAGSEDDQERP*
Ga0070708_1000273907	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	IGTSEVFDADGKKVAVATGSSVILPGRPATVTTELTLPRLDGSEDDDERP*
Ga0066661_106685141	3300005554	Soil	GTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEERP*
Ga0070762_112262481	3300005602	Soil	ARGRVIHRGRTIAIGISEGFNADGKKVAVATGSAVIMPSRPATVTTELTLPALDEDDERP
Ga0070763_103928831	3300005610	Soil	VIHRGRTMAIGTSEVFDAEGKKVAVATGSAVILPGRPATVITELALPRLDESEDDGDRP*
Ga0066903_1027562902	3300005764	Tropical Forest Soil	IHRGRTVAIGTSEVFDADGKKVAVASGSALVLPGRPATVITELTPPHPLDAAHDE*
Ga0075017_1012874972	3300006059	Watersheds	DVFDADGKKVAVATGSAVILPGRPATVTTELTLPPLDGSEDDEERP*
Ga0079221_103472021	3300006804	Agricultural Soil	KVAVATGSAVILPGRPATVTTELTLPNLDRGEDDQERP*
Ga0079221_110123241	3300006804	Agricultural Soil	DGKKVAVATGSAVILPGRPATVTSELTLPDLAGSEDDEERS*
Ga0075434_1006335091	3300006871	Populus Rhizosphere	KVAVATGSAVILPGRPAAVTTELTLPDLDGSEDDQERP*
Ga0099830_102589233	3300009088	Vadose Zone Soil	SDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLARSEDDEERP*
Ga0099827_107927812	3300009090	Vadose Zone Soil	KKVAVATGSAVVLPGRPATVTTELTLPYLDGSEDDQEHP*
Ga0105245_126095631	3300009098	Miscanthus Rhizosphere	DGKKVAVATGSAVILPGRPATVTTELTFPNLDRSEDDQERP*
Ga0116214_11740481	3300009520	Peatlands Soil	IAIGTSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPQLDESEDDEERP*
Ga0116221_13321042	3300009523	Peatlands Soil	MAVGTSEVFDADGKKVAVATGSAVILPSRPATVTTELTLPPLDGSEDDEERP*
Ga0116220_102528541	3300009525	Peatlands Soil	RSMAVGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPPLDGSEDDEERP*
Ga0116217_101136003	3300009700	Peatlands Soil	MAIAISEVFNADGNKVAVATGSAVILPGRPATVTTELTLPQLDESEDDEERP*
Ga0126382_122594702	3300010047	Tropical Forest Soil	IHRGRGVAIGTSQVFDADGKKVAVASGSALILPGRPATVTTELTPAHPLDAAGED*
Ga0126382_122598851	3300010047	Tropical Forest Soil	VIHRGRSVAIGTSEVFDADGNKVAVATGSAVILPGRPATVTTELTFPDLAGSEDDEERP*
Ga0126376_115014801	3300010359	Tropical Forest Soil	HRGRTVAIGTSEVFDADGKKVAVASGSALVLPGRPATVTTELTPPHPLDAAHDE*
Ga0126381_1035348832	3300010376	Tropical Forest Soil	WRVATGSAVILPGRPATVTTELALPQLDGSEDDEERRV*
Ga0136449_1015129702	3300010379	Peatlands Soil	VARGTVIHRGRSIAIGTSEVFDADGRKVAVATGSAVILPGRPSTVTTELMLPRLDESEDDEERP*
Ga0136449_1019828651	3300010379	Peatlands Soil	MAVGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPYLDGSEDDQERPEPSLRPQSKDPP*
Ga0134126_121118702	3300010396	Terrestrial Soil	DGKKVAVATGSSLILPGRPATVTTELTLPDLAGSEDDQERP*
Ga0126344_10523001	3300010866	Boreal Forest Soil	RGTVIHRGRSMAIGTSDVFDADGEKVAVATGSSVILPGRPATVTTELALPGPGY*
Ga0137388_106841431	3300012189	Vadose Zone Soil	SMAVAASEAFDAAGKKVAVATGSAVILPGRPAAVTTELTLPDLAGNEDDEERPIPASGDNRRTGP*
Ga0137363_113192231	3300012202	Vadose Zone Soil	MAIGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEERP*
Ga0137380_105523831	3300012206	Vadose Zone Soil	GRDLMARGTVIHRGRSMAIGTSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPYLDGSEDDQEHP*
Ga0137381_106438641	3300012207	Vadose Zone Soil	EVFDADGKKVAVATGSSVILPGRPATVTTELTLPRLDGSEDDDERP*
Ga0137379_100176481	3300012209	Vadose Zone Soil	MAIGTSDVFDADGKKAAVATGSAIILPGRPATVTTELTLPDLAGSEDDEERP*
Ga0137398_107220313	3300012683	Vadose Zone Soil	RGTVIHRGRSMAIGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEERP*
Ga0137416_114024082	3300012927	Vadose Zone Soil	VAVATGSAVILPGRPATVTTELTLPPVDGSEDDEERP*
Ga0137407_116540831	3300012930	Vadose Zone Soil	AIGTSQVFDANGKTVAVATGSALILSGRPATVTTELTPPHPIGSPDDE*
Ga0181522_103780861	3300014657	Bog	VIHRGRSMAIGTSEVFDADGKKVAVATGSSVIMPGRPATVTTELTLPYLDGSEDDQ*
Ga0181522_104297742	3300014657	Bog	VIHRGRSMAIGTSDVFDADGRKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEEAWPRTSS*
Ga0137412_101430621	3300015242	Vadose Zone Soil	GRSMASGSSVVLDADGKKVAVATGSSVFLPGRPATVTTELTLPDLAGSEDDEERP*
Ga0132257_1024111212	3300015373	Arabidopsis Rhizosphere	VAEGAVIHRGRTVAIGTSEVFDADGKKVAVASGSALVLPGRPATVTTELTPPHPLDAAHDE*
Ga0182035_119500262	3300016341	Soil	GTVIHRGRSMAIGTSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPQPDESEDNEER
Ga0182032_107663862	3300016357	Soil	AIGTSDVFDADGKKVAVATGSAVILPERPATVTTELTLPYLDGSEDDQGR
Ga0182040_116318911	3300016387	Soil	GRSIAIGTSDVFDADGKKVAVATGSAVILPGRPATVTPGLTLPYLDGGET
Ga0187820_10370342	3300017924	Freshwater Sediment	FDADGKKVAVATGSAVILPGRPATVTTELTLPYLDGSEDDQERPWPSLRPRPKDQP
Ga0187806_12548842	3300017928	Freshwater Sediment	ARETLIHRGRSMAIGTSDVFDADGKKVAVATGSAVIMPGRPATVTTELTLPDLAGERG
Ga0187814_102332411	3300017932	Freshwater Sediment	IGTSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPPLDWSEDDQERP
Ga0187781_105303913	3300017972	Tropical Peatland	VFDADGKKVAVATGSAVILPGRPATVTTELALPQLDESEDDQERP
Ga0187780_104580442	3300017973	Tropical Peatland	MAIGTSDVFDADGKKVAVATGSAVIMPGRPATVTTELTLPDLAGERG
Ga0187777_103867911	3300017974	Tropical Peatland	DVFDADGKKVAVATGSAVILPGRPATVTTELILPDLGGNEDDEERP
Ga0187769_108581972	3300018086	Tropical Peatland	VIHRGRSMAIGTSEVFDANGKKVAVATGSAVILPGRPATVTTELALPQLDESEDDQERP
Ga0210401_104251731	3300020583	Soil	TSEVFDADGHKVAVASGSALMLPGRPATVTTELAPPHPPDAANDDYDR
Ga0210404_102091873	3300021088	Soil	GTVIHRGRSMAIGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEER
Ga0187846_100169414	3300021476	Biofilm	MAIATSDVFDADGRKVAVATGSAVIMPGRPATVTTELTLPDLAESEDSEEHP
Ga0224549_10092802	3300022840	Soil	MAIGTSDVFDADGKKVAVATGSAVILPGRPATVTAELTLPDLAGSQDDEERP
Ga0228598_10849561	3300024227	Rhizosphere	GTSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPQLDESEDDEERP
Ga0207684_100826951	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	ADGKKVAVATGSSVILPGRPATVTTELTLPRLDEGEDDDERP
Ga0207659_106466383	3300025926	Miscanthus Rhizosphere	SVAIGTSHVFDADGKKVAVANGSSLILPGRPATVTSELTPPPAPDGVDDE
Ga0207700_101725482	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	RGRSIAIGTSDVFDADGKKVAVATGSSLILPGRPATVTTELTLPPLAGSEDDQERP
Ga0207726_10432292	3300027045	Tropical Forest Soil	ARGTMIHRGRGMAIGISDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLGGSEDDEERP
Ga0209420_11267941	3300027648	Forest Soil	KVAVATGSAVILPGRPATVTTELTLPYLDGNEDDQEHP
Ga0209333_10665622	3300027676	Forest Soil	TSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSQDDGERP
Ga0209039_103940322	3300027825	Bog Forest Soil	KAAVATGSTVILPGRPATVTTELTLPQLDESEDDEERR
Ga0209180_102792552	3300027846	Vadose Zone Soil	GKKVAVATGSAVILPGRPATVTTELTLPYLDGSEDDQERP
Ga0209380_108888531	3300027889	Soil	DGKKVAVATGSAVILPGRPATVTTELTLPDLTRSQDDGEAWPRTSS
Ga0302232_100299963	3300028789	Palsa	VIHRGRSMAIGTSDVFDADGKKVAVATGSAVILPGRPAAVTAELTLPDLAGSQDDEERP
Ga0302226_101935561	3300028801	Palsa	ARGTVIHRGRSMAIGTSDVFDADGKKVAVATGSAVILPGRPATVTAELTLPDLAGSQDDEERP
Ga0302221_101574682	3300028806	Palsa	MAIGTSDVFDADGKKVAVATGSAVIPPGRPATVTAELTLPDLAGSQDDEERP
Ga0302235_100327702	3300028877	Palsa	VIHRGRSMAIGTSDVFDADGKKVAVATGSAVILPGRPATVTAELTLPDLAGSQDDEERP
Ga0311354_101515384	3300030618	Palsa	ADGRKVAVATGSAVILPGRPATVTTGLTLPQLDESEDDEERP
Ga0170834_1128687652	3300031057	Forest Soil	AVGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEERP
Ga0170818_1045345862	3300031474	Forest Soil	GTVIHRGRSMAVGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEER
Ga0318541_103831672	3300031545	Soil	HRGRTIAIGTSDVFDADGKKVAVATGSAVILPDRPATVTRELTLPDLGASEDDQERP
Ga0318560_102132961	3300031682	Soil	EVFDADGKKVAVATGSAVILPDRPATVTTELALPQLDESEDDQERP
Ga0318501_104897191	3300031736	Soil	KKVAVATGSAVILPDRPATVTTELALPQLDESEDDQERP
Ga0318494_101032143	3300031751	Soil	LRATGTVIHRGRSIAIGTSEVFDSGGKKVAVATGSAVILPGRPATVTTELTLPQPDESEDDGERR
Ga0318494_104418973	3300031751	Soil	FDADGKKVAVATGSSVILPGRPATVTTELTLPQLAGSEDDQER
Ga0318535_100587981	3300031764	Soil	KKVAVATGSAVILPGRPATVTTELTLPQPDESEDNEERR
Ga0318526_103732401	3300031769	Soil	SAVFDADGKKVAVATGSAVILPGRPATVTRELTLPDPGASEDEQEHS
Ga0318547_106633311	3300031781	Soil	RDLLARGTVIHRGRTIAIGTSEVFDADGKKVAVATGSAVILPGRPATVTSELTLPDPGASEDDQEAP
Ga0318552_100642363	3300031782	Soil	MHRGRSIAIGTSDVFDADGKKVAVATGSAVILPGRPATVTPELTLPYLDGGET
Ga0318552_106679191	3300031782	Soil	EVFDADGDLLAVATGSAVILPGRPATVTRELTLPDPGASEDEQEHS
Ga0318568_100482843	3300031819	Soil	RGRSIAIGTSDVFDADGKKVAVATGSAVILPGRPATVTPELTLPYLDGGET
Ga0318512_104623761	3300031846	Soil	AIGTSDVFNADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDAEEGP
Ga0306925_106512973	3300031890	Soil	SIAIGTSEVFDADGKKVAVATGSSVILPGRPATVTTELTLPQLAGSEDDQER
Ga0306925_109228992	3300031890	Soil	IGTSDVFDADGKKVAVATGSAVILPDRPATVTRELTLPDLGASEDDQERP
Ga0318551_103804792	3300031896	Soil	TMAIGTSEVFDADGKKVAVATGSAVILPGRPATVTTELALPQLDESEDDQERP
Ga0318520_107584301	3300031897	Soil	RDLLARGTVIHRGRTIAIGTSDVFDADGKKVAVATGSAVILPDRPATVTRELTLPDLGASEDDQERP
Ga0310910_102448151	3300031946	Soil	HRGRSMAIGTSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPQPDESEDNEERR
Ga0318531_103661103	3300031981	Soil	HRGRTMAIGTSEVFDADGKKVAVATGSAVILPDRPATVTTELALPQLDESEDDQERP
Ga0306922_107902281	3300032001	Soil	DLVARGTVIHRGRSIAIGTSDVFNADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDAEEGP
Ga0318562_108120781	3300032008	Soil	VSPNGRDLVAEGAVIHRGRTVAIGTSEVFDSDGKKVAVASGSALVLPGRPATVATELTPPHPLDVAHDE
Ga0310911_104365141	3300032035	Soil	RDLVARGTVIHRGRSMAIGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAASEDDEERP
Ga0318505_100631101	3300032060	Soil	SDVFDADGKKVAVATGSAVILPGRPATVTPELTLPYLDGGET
Ga0318553_103380152	3300032068	Soil	MAIGTSDVFDADGKKVAVATGSAMILPGRPATVTTELTLPDLPGSEDDEEHP
Ga0318518_103032362	3300032090	Soil	LVARGTVIHRGRSIAIGTSDVFNADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDAEEGP
Ga0311301_115464711	3300032160	Peatlands Soil	MAVGTSDVFDADGKKVAVATGSAVILPGRPATVTTELTLPYLDGSEDDQERPEPSLRPQSKDPP
Ga0306920_1002970941	3300032261	Soil	DLVARGTVIHRGRSIAIGTSDVFNADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEERP
Ga0306920_1021914032	3300032261	Soil	VPPDGRELAARGTVIHRGRSMAVGTSEVFDADGKKVAVATGSAVILPGRPATVTTELTLPDLAGSEDDEEET
Ga0306920_1035716101	3300032261	Soil	HRGRTVAIGTSEVFDADGKKVAVASGSALVLPGRPATVTTELTPRHPLDPHNDEHER
Ga0306920_1040685592	3300032261	Soil	EVFDADGKKVAVATGSAVILPGRPATVTRELTLPDLGASEDDLERS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100680

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences