NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100673

Metagenome / Metatranscriptome Family F100673

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100673
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 75 residues
Representative Sequence MGMTAMALGLIVLTLVAGCLLWTLLFHFEEFYPAAQDGISHPRRANLLFLTLTGLITVGILAVLFLEFQQLVTS
Number of Associated Samples 53
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 71.57 %
% of genes near scaffold ends (potentially truncated) 22.55 %
% of genes from short scaffolds (< 2000 bps) 86.27 %
Associated GOLD sequencing projects 48
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (61.765 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(52.941 % of family members)
Environment Ontology (ENVO) Unclassified
(63.725 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(81.373 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 63.73%    β-sheet: 0.00%    Coil/Unstructured: 36.27%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF01694Rhomboid 5.88
PF07486Hydrolase_2 2.94
PF05974DUF892 1.96
PF07589PEP-CTERM 1.96
PF14534DUF4440 1.96
PF05960DUF885 1.96
PF01624MutS_I 0.98
PF00561Abhydrolase_1 0.98
PF07690MFS_1 0.98
PF07883Cupin_2 0.98
PF05345He_PIG 0.98
PF01625PMSR 0.98
PF11306DUF3108 0.98
PF06172Cupin_5 0.98
PF04679DNA_ligase_A_C 0.98
PF01833TIG 0.98
PF00005ABC_tran 0.98
PF03301Trp_dioxygenase 0.98
PF08439Peptidase_M3_N 0.98
PF03459TOBE 0.98
PF02540NAD_synthase 0.98
PF13545HTH_Crp_2 0.98
PF13439Glyco_transf_4 0.98
PF00583Acetyltransf_1 0.98
PF10459Peptidase_S46 0.98
PF00398RrnaAD 0.98
PF00550PP-binding 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 5.88
COG3773Cell wall hydrolase CwlJ, involved in spore germinationCell cycle control, cell division, chromosome partitioning [D] 2.94
COG3685Ferritin-like metal-binding protein YciEInorganic ion transport and metabolism [P] 1.96
COG4805Uncharacterized conserved protein, DUF885 familyFunction unknown [S] 1.96
COG003016S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)Translation, ribosomal structure and biogenesis [J] 0.98
COG0171NH3-dependent NAD+ synthetaseCoenzyme transport and metabolism [H] 0.98
COG0225Peptide methionine sulfoxide reductase MsrAPosttranslational modification, protein turnover, chaperones [O] 0.98
COG0249DNA mismatch repair ATPase MutSReplication, recombination and repair [L] 0.98
COG1164Oligoendopeptidase FAmino acid transport and metabolism [E] 0.98
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.98
COG3483Tryptophan 2,3-dioxygenase (vermilion)Amino acid transport and metabolism [E] 0.98
COG3542Predicted sugar epimerase, cupin superfamilyGeneral function prediction only [R] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A61.76 %
All OrganismsrootAll Organisms38.24 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004633|Ga0066395_10900434All Organisms → cellular organisms → Bacteria536Open in IMG/M
3300005332|Ga0066388_108028255Not Available528Open in IMG/M
3300005355|Ga0070671_100866839Not Available788Open in IMG/M
3300005363|Ga0008090_14262740Not Available660Open in IMG/M
3300005542|Ga0070732_10562899Not Available692Open in IMG/M
3300005764|Ga0066903_100240355All Organisms → cellular organisms → Bacteria2777Open in IMG/M
3300005764|Ga0066903_100341574All Organisms → cellular organisms → Bacteria2411Open in IMG/M
3300005764|Ga0066903_100655060All Organisms → cellular organisms → Bacteria1837Open in IMG/M
3300005764|Ga0066903_101879239Not Available1146Open in IMG/M
3300005764|Ga0066903_105640982Not Available659Open in IMG/M
3300005764|Ga0066903_108573924Not Available521Open in IMG/M
3300006059|Ga0075017_101227555Not Available587Open in IMG/M
3300006804|Ga0079221_11727620Not Available511Open in IMG/M
3300009792|Ga0126374_10810071Not Available716Open in IMG/M
3300010043|Ga0126380_10976265Not Available711Open in IMG/M
3300010046|Ga0126384_10218224All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Allosphingosinicella → Allosphingosinicella indica1521Open in IMG/M
3300010046|Ga0126384_10285903All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli1349Open in IMG/M
3300010046|Ga0126384_10578733Not Available980Open in IMG/M
3300010046|Ga0126384_12081399Not Available544Open in IMG/M
3300010047|Ga0126382_10523414Not Available959Open in IMG/M
3300010048|Ga0126373_10008366All Organisms → cellular organisms → Bacteria → Proteobacteria8218Open in IMG/M
3300010048|Ga0126373_10134824All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2328Open in IMG/M
3300010048|Ga0126373_10244520All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1763Open in IMG/M
3300010048|Ga0126373_10433910All Organisms → cellular organisms → Bacteria1345Open in IMG/M
3300010048|Ga0126373_10820545All Organisms → cellular organisms → Bacteria → Proteobacteria992Open in IMG/M
3300010048|Ga0126373_10976303Not Available912Open in IMG/M
3300010048|Ga0126373_11036355All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria886Open in IMG/M
3300010048|Ga0126373_11167540All Organisms → cellular organisms → Bacteria836Open in IMG/M
3300010048|Ga0126373_11231472All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300010048|Ga0126373_11716163Not Available692Open in IMG/M
3300010048|Ga0126373_12944070Not Available531Open in IMG/M
3300010358|Ga0126370_12307939Not Available532Open in IMG/M
3300010359|Ga0126376_10217404All Organisms → cellular organisms → Bacteria1598Open in IMG/M
3300010359|Ga0126376_12599564Not Available555Open in IMG/M
3300010360|Ga0126372_11992163Not Available627Open in IMG/M
3300010360|Ga0126372_12074584Not Available616Open in IMG/M
3300010361|Ga0126378_11043116Not Available920Open in IMG/M
3300010361|Ga0126378_11612564All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300010361|Ga0126378_11685173Not Available720Open in IMG/M
3300010361|Ga0126378_11690841All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria719Open in IMG/M
3300010366|Ga0126379_10233271Not Available1798Open in IMG/M
3300010366|Ga0126379_10752870Not Available1071Open in IMG/M
3300010366|Ga0126379_11224965Not Available857Open in IMG/M
3300010366|Ga0126379_11522004Not Available775Open in IMG/M
3300010376|Ga0126381_100006037All Organisms → cellular organisms → Bacteria → Proteobacteria13377Open in IMG/M
3300010376|Ga0126381_100202191All Organisms → cellular organisms → Bacteria2657Open in IMG/M
3300010376|Ga0126381_100301237Not Available2195Open in IMG/M
3300010376|Ga0126381_100392127All Organisms → cellular organisms → Bacteria1931Open in IMG/M
3300010376|Ga0126381_100878470All Organisms → cellular organisms → Bacteria1290Open in IMG/M
3300010376|Ga0126381_101509857Not Available971Open in IMG/M
3300010376|Ga0126381_102815502Not Available694Open in IMG/M
3300010398|Ga0126383_10798678All Organisms → cellular organisms → Bacteria1026Open in IMG/M
3300010398|Ga0126383_11213637Not Available844Open in IMG/M
3300010398|Ga0126383_11705100Not Available719Open in IMG/M
3300010398|Ga0126383_11723498Not Available715Open in IMG/M
3300012948|Ga0126375_10294306Not Available1124Open in IMG/M
3300012971|Ga0126369_13714182Not Available500Open in IMG/M
3300015371|Ga0132258_10366095Not Available3571Open in IMG/M
3300015372|Ga0132256_101040101All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300015374|Ga0132255_105188336Not Available551Open in IMG/M
3300016270|Ga0182036_10644006All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans853Open in IMG/M
3300016371|Ga0182034_12041698Not Available506Open in IMG/M
3300016422|Ga0182039_10087489All Organisms → cellular organisms → Bacteria2260Open in IMG/M
3300016422|Ga0182039_10247874Not Available1449Open in IMG/M
3300017927|Ga0187824_10223401Not Available647Open in IMG/M
3300017937|Ga0187809_10103005All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300017947|Ga0187785_10039819All Organisms → cellular organisms → Bacteria1730Open in IMG/M
3300017947|Ga0187785_10075093Not Available1311Open in IMG/M
3300017959|Ga0187779_10250411Not Available1121Open in IMG/M
3300018060|Ga0187765_10746170Not Available647Open in IMG/M
3300021560|Ga0126371_10053960All Organisms → cellular organisms → Bacteria3854Open in IMG/M
3300021560|Ga0126371_10231964All Organisms → cellular organisms → Bacteria → Proteobacteria1954Open in IMG/M
3300021560|Ga0126371_10268329All Organisms → cellular organisms → Bacteria1826Open in IMG/M
3300021560|Ga0126371_10413711All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1491Open in IMG/M
3300021560|Ga0126371_10609050All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1241Open in IMG/M
3300021560|Ga0126371_10810952Not Available1082Open in IMG/M
3300021560|Ga0126371_11393528Not Available832Open in IMG/M
3300021560|Ga0126371_11450249Not Available816Open in IMG/M
3300021560|Ga0126371_11509141All Organisms → cellular organisms → Bacteria → Acidobacteria800Open in IMG/M
3300021560|Ga0126371_11625766Not Available772Open in IMG/M
3300027842|Ga0209580_10383249Not Available701Open in IMG/M
3300027874|Ga0209465_10097221All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1442Open in IMG/M
3300030730|Ga0307482_1276697Not Available534Open in IMG/M
3300031545|Ga0318541_10540593Not Available652Open in IMG/M
3300031561|Ga0318528_10014792Not Available3627Open in IMG/M
3300031573|Ga0310915_10466221All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agaridevorans898Open in IMG/M
3300031640|Ga0318555_10546014Not Available628Open in IMG/M
3300031744|Ga0306918_10764314Not Available755Open in IMG/M
3300031765|Ga0318554_10650239Not Available593Open in IMG/M
3300031770|Ga0318521_10664728Not Available632Open in IMG/M
3300031781|Ga0318547_10626103Not Available668Open in IMG/M
3300031890|Ga0306925_10161107Not Available2416Open in IMG/M
3300031897|Ga0318520_10501923Not Available749Open in IMG/M
3300031910|Ga0306923_10006371All Organisms → cellular organisms → Bacteria11627Open in IMG/M
3300031910|Ga0306923_11610116Not Available675Open in IMG/M
3300031912|Ga0306921_10710523Not Available1154Open in IMG/M
3300031912|Ga0306921_11188086All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium850Open in IMG/M
3300031912|Ga0306921_12324335Not Available561Open in IMG/M
3300031945|Ga0310913_10959665Not Available600Open in IMG/M
3300032076|Ga0306924_10297230All Organisms → cellular organisms → Bacteria → Proteobacteria1853Open in IMG/M
3300032783|Ga0335079_11554334Not Available652Open in IMG/M
3300033158|Ga0335077_10136416All Organisms → cellular organisms → Bacteria2832Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil52.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil8.82%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.92%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.96%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.96%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.98%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017947Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MGEnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066395_1090043413300004633Tropical Forest SoilMGITTMALALMVLTVVAGCLLWTLVFHFEEFYPVAKDRVSHARRAGLLFRTFTGLTTVGILTVLLLEFQQIITS*
Ga0066388_10802825513300005332Tropical Forest SoilMGMTAMALGLIVLTLVAGCLLWTLLFHFEEFYPAAKHGILQARTARLLFLTLAGLTTAGILVVLFLELLQLVTS*
Ga0070671_10086683913300005355Switchgrass RhizosphereMEITAVVVALMVLTSVAGCLLWTLLSHFEEFYPVAKDRASYARRAGLLFRALTGLTTAGILVVLLLELQQLISSPL*
Ga0008090_1426274023300005363Tropical Rainforest SoilFGCPRKSVNVGNAVAKEDAMGMTLALGLIVLTVVAGCLLWTLLFHFEEFYPAARDGISHPRRARLFFLTLTGLTTVGILVLLFLEFQQLVTS*
Ga0070732_1056289923300005542Surface SoilMGITAMALGLMGLTLVAGCLLWILQLRFEEFYPAAKDGILNPRSAGLLFRALAGVTTLGILAVLALEFQQLATP*
Ga0066903_10024035553300005764Tropical Forest SoilMTLVLGLIVLTVVAGCFLWTLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLTTVGILALLFLEFQQLVTS*
Ga0066903_10034157423300005764Tropical Forest SoilMGITTMVLALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVPHARRAGLLFRTFTGLITVGILAVLLLEFQQLVTS*
Ga0066903_10065506043300005764Tropical Forest SoilMGITTMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVSHARRAGLLFRTFTGLTTVGILTVLLLEFQQIITS*
Ga0066903_10187923923300005764Tropical Forest SoilMGISAMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVSHARRAGLLFRTFTGLTAVGILTVLLLEFQQIITS*
Ga0066903_10564098223300005764Tropical Forest SoilMGMTLALGLIVLTLVAGCFLWTLLFHFEEFYPAATNGILHPRRARMLFLTLTGLTTVGILAVLLLELQQLLTS*
Ga0066903_10857392413300005764Tropical Forest SoilMEIAAVVVALIVLTSVAGCLLWTLLRHFEEFYPVAKDRVAHARRAGLLFRALTGLTTAGILVVLLLEF
Ga0075017_10122755523300006059WatershedsMGITAMALALLVLTLVAGCLQWSLLFYSEELYPAAEGGFSHPLRVRLFFRTLTGLTTVGVLAVLLLEFRLVTS*
Ga0079221_1172762023300006804Agricultural SoilMEITAVVVALMVLTSVAGCLLWTLLSHFEEFYPVAKDRASYARRAGLLFRALTGLTTAGILVVLLL
Ga0126374_1081007113300009792Tropical Forest SoilAMGMTLALGLIVLTLVAGCFLWSLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLTTVGILALLFLEFQQLVTS*
Ga0126380_1097626523300010043Tropical Forest SoilMGMTLALGLIVLTLVAGCFLWSLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLITVGILALLFLEFQQLVT
Ga0126384_1021822413300010046Tropical Forest SoilMTAMALGLIVLTLVAGCLLWTLLFHFEQFYPAAKDGISHPRRANLLFLTFTGLITVGILAVLFLELQQLVTS*
Ga0126384_1028590323300010046Tropical Forest SoilMGMTLVLGLIVLTVVAGCFLWTLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLTTVGILALLFLEFQQLVTS*
Ga0126384_1057873323300010046Tropical Forest SoilMGITAMALALMVLTLVAGCLLWTLLCHMEEFYPVPKDRISHARRAGLLFRTLTGLATVGILAVLLLEFQQLITS*
Ga0126384_1208139913300010046Tropical Forest SoilMGITTMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVSHARRAGLLFRTFTGLTTVGILAVLLLEFQQIITS*
Ga0126382_1052341423300010047Tropical Forest SoilMGITAMALALMVLTLVAGCLLWILVFHFEEFYPVAKDRVSNARRAGLLFRTFTGLTTVGILTVLLLAFQQLVTS*
Ga0126373_1000836623300010048Tropical Forest SoilVLTILTDPSKSAGTEKEDVMGITAVALALIVMTFVAGCLLWTLMFHFEEFYPTAKDGFSHPRRAKLLFLTLTGLMTFGIVAVLFLEFQQLVTS*
Ga0126373_1013482423300010048Tropical Forest SoilMSMTAAALALIVLTLVAGCLLWTLLFHFEDFYPAAKDEISSPRTAGMLFLTLTGLTTLGILAVLLLELQQLVT*
Ga0126373_1024452023300010048Tropical Forest SoilLRYEKEGTMGITAMAVALMVSTLVAGCLLWTLLFHFEELYPVAKDRVSHARRAGLLFRTLTGLSTVGILVVLFLAVQLLVTS*
Ga0126373_1043391013300010048Tropical Forest SoilRKGGAMRIAAAMAVGLMVLTLVAGCVLWTFLFHFEEFYPVAKDRVSQARRAALLFRTLTGLATVGILAVLLMEFQLLVTS*
Ga0126373_1082054523300010048Tropical Forest SoilMTLGLIFLTLMAGCLLWTLLFHFEEFYPTAKDGFSHPRRAKLLFLTFTGLITAGILAVLFLNFQQLIAS*
Ga0126373_1097630323300010048Tropical Forest SoilMGIAAAMVLALMILTLVAGCLLWTLLCHMEEFYPVPKDRISHARRAGLLFRTLTGLTTIGIVAVLLLEFRQLVTS*
Ga0126373_1103635523300010048Tropical Forest SoilMGMTLALGLIVLTVVAGCLLWTLLFHFEEFYPAAKEGISHPRRVRLLFLTLTGLTTVGILALLFLEFQQLVTS*
Ga0126373_1116754013300010048Tropical Forest SoilMGITALALALMVLTLVAGCLLWTLVSHFEEFYPVAKERVSHARRAGLVFRTFTGLTTVGILTVLLLEFQQLVTW*
Ga0126373_1123147223300010048Tropical Forest SoilTLVAGCLLWTLLFHFEEFYPVAQDGISHPRWAELLFLTLTGLITVGILVVLILEFQQLVTS*
Ga0126373_1171616313300010048Tropical Forest SoilMRIAAAMAVALMVLTLVAGCVLWTFLFHFEEFYPVARERVSQARRAALLFRTLTGLATVGIVAVLLIEFQLLVTS*
Ga0126373_1294407013300010048Tropical Forest SoilMGMTAMALGLIVLTLVAACLLWTLLFHFEEFYPAAQDGISHPRRANLLFLTLTGLITVGILAVLFLEFQQLVTS*
Ga0126370_1230793913300010358Tropical Forest SoilKVRNVVAKEDAMGMTLALGLIVLTVVAGCFLWTLLFHFEEFYPAAKHGILQPQTARLVFLALTGITTAGILTILFLEFQQLITS*
Ga0126376_1021740423300010359Tropical Forest SoilMGIAAMALALMVLTLVAGCLLWILVFHFEEFYPVAKDRVSHARRAGLLFRTFTGLTTVGILTVLLLAFQQLVTS*
Ga0126376_1259956423300010359Tropical Forest SoilMGMTAMALGLIVLTLVAGCLLWTLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLITVGILAVLFLEFQQLVTS*
Ga0126372_1199216313300010360Tropical Forest SoilMGITAMALALMVLTLVAGCLLWILVFHFEEFYPVAKDRVSHARRAGLLFRTFTGLITVGILTV
Ga0126372_1207458413300010360Tropical Forest SoilMNLGNAVATEDAMGMTLALGLIVLTVVAGCFLWTLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLTTAGILALLFLEFQQLVTS*
Ga0126378_1104311623300010361Tropical Forest SoilMDCFTVSRRKCRSKEDDMGTTAMALGLIVLTLAAGCLLWTLMFHFEEFYPAARDGILNRRRAGLLFLTLTGLTTAGILAVLFLEFQQLITS*
Ga0126378_1161256423300010361Tropical Forest SoilMGITTMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVSHARRAGLLFRAFTGLTTVGILTVLLLEFQQIITS*
Ga0126378_1168517323300010361Tropical Forest SoilMALGLIFLTLMAGCLLWTLLFHFEEFYPTAKDGFSHPRRAKLLFLTFTGLITAGILAVLFLNFQQLIAS*
Ga0126378_1169084123300010361Tropical Forest SoilMSMTAATLALIVLTLVAGCLLWTLLFHFEDFCPAAKDEISSPRTAGMLFLTLTGLTTLGILAVLLLEVQQLVTS*
Ga0126379_1023327123300010366Tropical Forest SoilMGMTLALGLIVLTLVAGCFLWSLLFHFEEFYPAAKHGILHPQRVRLLFLTLTGLTTAAILALLFLEFQQLVTS*
Ga0126379_1075287023300010366Tropical Forest SoilMGISAMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVPHARRAGLLFRTFTGLITVGILAVLLLEFQQLVTS*
Ga0126379_1122496523300010366Tropical Forest SoilMRRACREGQKCPSLSNIELSHFSTLRMTAMALGLIVLTLVAGCLLWTLLFHFEEFYPAAKDGISHPRRANLLFLTLTGLITVGILAVLFLELQQLVTS*
Ga0126379_1152200413300010366Tropical Forest SoilMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVSHARRAGLLFRTLTGLATVGILAVLLLEFQQLITS*
Ga0126381_100006037123300010376Tropical Forest SoilMSMTAATLALIVLTLVAGCLLWTLLFHFEDFYPAAKDEISSPRTAGMLFLTLTGLTTLGILAVLLLELQQLVTS*
Ga0126381_10020219143300010376Tropical Forest SoilMRIAAAMAVALMVLTLVAGCVLWTFLFHFEEFYPVSKEPVSHARRAALLFRTLAGLATVGIVAALLIEFQLLVTS*
Ga0126381_10030123723300010376Tropical Forest SoilMRRACREGQKCPSLSDIELLHFSTMGMTAMALGLIVLTLVAGCLLWTLLFHFEEFYPVAQDGISHPRWAELLFLTLTGLITVGILVVLILEFQQLVTS*
Ga0126381_10039212733300010376Tropical Forest SoilMGIKAMALALMILALVAGCLQWSLLFHLEEFYPVAADGFSHARRVGLVFRTLTGLTTVGILAVLLLELQQLLTS*
Ga0126381_10087847013300010376Tropical Forest SoilKDAMGMTLVLGLIVLTVVAGCFLWTLLFHFEEFYPATKGGMLHPRRAKLLFLTLTGLTTVGIIALLVLELQQLVTS*
Ga0126381_10150985723300010376Tropical Forest SoilMGLTAMAVALMVLTLVAACFLWTLLFRFEEFHPVAEDPVSHPRRVGLLFRTLTGLTTVGVFAVLLLEFYLLV
Ga0126381_10281550213300010376Tropical Forest SoilMGMTLALGLIVLTLVAGCFLWSLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLITVGILALLFLEFQQLVTS*
Ga0126383_1079867823300010398Tropical Forest SoilMGMTAMALGLIVLTLVAGCLLWTLLFHFEEFYPAAQDGISHPRRANLLFLTLTGLITVGILAVLFLEFQQLVTS*
Ga0126383_1121363713300010398Tropical Forest SoilMAVALMLLTLVAGCLLWILLFHFEEFYPVAQERVSHARRAGLLFRTLTGLTTVGILAVLLLEIQQLITSPL*
Ga0126383_1170510013300010398Tropical Forest SoilMGMTLVLGLIVLTVVAGCFLWTLLFHFEEFYPAAKHGILQARTARLLFLTLAGLTTAGILVVLFLELQQLVTS*
Ga0126383_1172349813300010398Tropical Forest SoilMGIAAMALALMVLTLVAGCLLWILVFHFEEFYPVAKDRVPHARRAGLLFRTFTGLTTVGILTVLLLEFQQLVTS*
Ga0126375_1029430623300012948Tropical Forest SoilMGIAAMALALMVLTLVAGCLLWILVFHFEEFYPVAKERVSHARRAGQLFRTFTGLTTVGILTVLLLAFQQIVTS*
Ga0126369_1371418213300012971Tropical Forest SoilMVLTCVAGCLLWTLLFRFEEFYPVAKDRASHARRAGLLFRTLTGVTTVGIIAILLLEFQQLVTW*
Ga0132258_1036609543300015371Arabidopsis RhizosphereMGMTAVALGLIVLTLVAGCLLWTLLFHFEEFYPVAKNGILHSGRARLLFLTLTGLTTVGILAVILLEFQQLLIS*
Ga0132256_10104010113300015372Arabidopsis RhizosphereMGMTAVALGLIVLTLVAGCLLWTLLFHFEEFYPVAKNGILHSGRARLLFLTLTGLTTVGILAVLLLELQQLVTSPL*
Ga0132255_10518833613300015374Arabidopsis RhizosphereMTAVALGLIVLTLVAGCLLWTLLFHFEEFYPVAKNGILHSGRARLLFLTLTGLTTVGILAVILLEFQQLLIS*
Ga0182036_1064400623300016270SoilMGMTAGALALIVVTLVAGCLLWALLYHVEEFCPAAKDEISNPRRAGLLFLALTGLTTVGILAVLFLEFQQLVTP
Ga0182034_1204169813300016371SoilMTLALGLIVLTVVAGCFLWTLLFHFEEFYPAAQDGILHLRRARLLFLTLTGLTTVGILAVLLLELH
Ga0182039_1008748933300016422SoilMGMTTVALGLIVLTLVAGCLLWTLLFHFEDFYPMAKDGISHPQRAKLLFLTLTGLMTVGIVAVLFLEFQQLVTS
Ga0182039_1024787433300016422SoilMGMTAIALGLVVLTLAAGCLLWTLQLHFEEFYPVTSEGIPNPRRARLLFLTLTGLTTVGIIAVLLLEFQQLVISQAL
Ga0187824_1022340113300017927Freshwater SedimentMEITAVVVALMVLTSVAGCLLWTLLSHFEEFYPVANDRASHARRAGLLFRALTGLTTAGILVVLLLELQQLISAPL
Ga0187809_1010300523300017937Freshwater SedimentMGTTAMALGLIVLTLAAGCLLWTLLLHFEEIYPAARKARVLFLALTGVTTVGILAVLLLEVRQLVSS
Ga0187785_1003981913300017947Tropical PeatlandMEIAAVVVALIVLTLVAGCLLWTLLWHFEEFYPVAKDRVWYARRAGLLFRALTGLTTVGILVVLLLEFQQLLTARF
Ga0187785_1007509323300017947Tropical PeatlandMEMTLALGLIVLTVVAGCFLWTLLFHFEEFYPAANHGILHPQTAKLVFLTLTGITTAGILTILFLEFQQLVIS
Ga0187779_1025041123300017959Tropical PeatlandMGITAMALALIILTLVAGCLLWTLLFHYEEFYAAAKNGISHPRRARLLFLTLTGLTTIGILAVLLLEVQQLVTS
Ga0187765_1074617023300018060Tropical PeatlandVLTLMAGCFLWTLLFHFEEFYPAAKDGILHPRRARLLFLTLTGLTTVGILAVLFLELQQLVAS
Ga0126371_1005396023300021560Tropical Forest SoilMTLVLGLIVLTVVAGCFLWTLLFHFEEFYPATKGGMLHPRRAKLLFLTLTGLTTVGIIALLVLELQQLVTS
Ga0126371_1023196443300021560Tropical Forest SoilMAITSVAAALMVLTLVAGYLLWTLMFHFEEFYPVAKDRVSHARRAGLLFRILTGLATVGILAVLLLEFQQLVTS
Ga0126371_1026832923300021560Tropical Forest SoilMGISAMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVPHARRAGLLFRTFTGLITVGILAVLLLEFQQLVTS
Ga0126371_1041371113300021560Tropical Forest SoilEDVMGITSMALGLIFLTLMAGCLLWTLLFHFEEFYPTAKDGFSHPRRAKLLFLTLTGVITAGILAVLFLNFQQLIAS
Ga0126371_1060905023300021560Tropical Forest SoilMGITAMAVALMVSTLVAGCLLWTLLFHFEELYPVAKDRVSHARRAGLLFRTLTGLSTVGILVVLFLAVQLLVTS
Ga0126371_1081095223300021560Tropical Forest SoilMGITTMALALMVLTLVAGCLLWTLVFHFEEFYPVAKDRVSHARRAGLLFRTFTGLTTVGILTVLLLEFQQIITS
Ga0126371_1139352823300021560Tropical Forest SoilMSMTAAALALIVLTLVAGCLLWTLLFHFEDFCPAAKDEISSPRTAGMLFLTLTGLTTLGILAVLLLELQQLVTS
Ga0126371_1145024913300021560Tropical Forest SoilMGMTLALGLIVLTVVAGCFLWSLLFHFEEFYPAARDGILHPRRARLLFLTLTGLTTVGILTVLFLEFQQLVTS
Ga0126371_1150914113300021560Tropical Forest SoilMGITAIAVALMVSTLVAGCLLWTLMFHFEELYPVAKDRARRAGLLFRTFTVLTAVGILAVLLLEFQELVTS
Ga0126371_1162576613300021560Tropical Forest SoilMALGLIVLTLVAGCLLWTLLFHFEEFYPAAQDGISHARRANLLFLTLTGLITVGILAVLFLEFQQLVTS
Ga0209580_1038324913300027842Surface SoilMGITAMALGLMGLTLVAGCLLWILQLRFEEFYPAAKDGILNPRSAGLLFRALAGVTTLGILAVLALEFQQLATP
Ga0209465_1009722113300027874Tropical Forest SoilTLKDAMGMTLVLGLIVLTVVAGCFLWTLLFHFEEFYPAAKHGILHPRRARLLFLTLTGLTTVGILALLFLEFQQLVTS
Ga0307482_127669713300030730Hardwood Forest SoilDAMGITAMALGLMGLTLVAGCLLWILQLRFEEFYPAAKDGILNPRSAGLLFRALAGVTTLGILAVLALEFQQLATP
Ga0318541_1054059313300031545SoilMALPFYIELSHFSTMGMTAMALGLIVLTLVAGCLLWTLQFHFEEFYPAAKDGISHSRRVNLLFLTLTGLITVGILAILFLEFQQLVTS
Ga0318528_1001479223300031561SoilMGMTAIALGLVVLTLAAGCLLWTLQFHFEEFYPVTSEGIPNPRRARLLFLTLTGLTTVGIIAVLLLEFQQLVISQAL
Ga0310915_1046622113300031573SoilMGMSAAALALIVVTLVAGCLLWALLYHVEEFCPAAKDEISNPRRAGLLFLALTGLTTVGILAVLLLELH
Ga0318555_1054601413300031640SoilMGMTAIALGLVVLTLAAGCLLWTLQFHFEEFYPVTREGISNPRRARLLFLTLTGLTTVGIIAVLLLEFQQLVISQAL
Ga0306918_1076431413300031744SoilMALPFYIELSHFSTMGMTAMALGLIVLTLVAGCLLWTLQFHFEEFYPAAKDGISHSRRVNLLFLTLTGLITVG
Ga0318554_1065023913300031765SoilMALPFYIELSHFSTMGMTAMALGLIVLTLVAGCLLWTLLFHFEEFYPAAQDGISHPRRANLLFLTLTGLITAGILAVLFLEFQQLVTS
Ga0318521_1066472823300031770SoilQLHRSRADTLKDAMGMTLALGLIVLTVVAGCFLWTLLFHFEEFYPAAQDGILHLRRARLLFLTLTGLTTVGILAVLLLELH
Ga0318547_1062610323300031781SoilMRRACREGQKCPSLSNIELSHFSTMGMTTVALGLIVLTLVAGCLLWTLQFHFEEFYPAAKDGISHPRRARLLFVAFTGLTTIGILAELFLEFQQLVTS
Ga0306925_1016110723300031890SoilMALPFYIELSHFSTMGMTAMALGLIVLTLVAGCLLWTLQFHFEEFYPAAKDGISHSRRVNLLFLTLTGLITVGILAILFLEFQQLVSS
Ga0318520_1050192313300031897SoilMGMTAIALGLVVLTLAAGCLLWTLQFHFEEFYPVTREGISNPRRARLVFLTLTGLTTVGIIAVLLLEFQQLVISQAL
Ga0306923_1000637113300031910SoilMALPFYIELSHFSTMGMTAMALGLIVLTLVAGCLLWTLQFHFEEFYPAAKDGISQSRRVNLLFLTLTGLITVG
Ga0306923_1161011623300031910SoilMGMTAAALALIVLTLVAGGLLWTLLYHFEDFYPAAKDEIAYPRRAGLLFLTLTGLTTVGILAVLLLELQQLGTW
Ga0306921_1071052313300031912SoilMALPFYIELSHFSTMGMTAMALGLIVLTLVAGCLLWTLQFHFEEFYPAAKDGISQSRRVNLLFLTLTGLITVGILAILFLEFQQLVTS
Ga0306921_1118808623300031912SoilMSVTAMALALVALTLVAGCLLWTLSFHFEEFYPDTKDGASHARRAGLLFRAVTGLTAVAILAVLLLEFQQLITW
Ga0306921_1232433523300031912SoilMGMTTVALGLIVLTLVAGCLLWTLLLHFEEFYPTAKDGISHPRRANLLFLTLTGLITVGILALLFLEFQQVGTS
Ga0310913_1095966513300031945SoilMGMTLALGLIVMILVAACFLWTLLFHFEEFYPAANDGISHLRRARLLFITVTGLTTVGILAVLFLELQQLVTS
Ga0306924_1029723023300032076SoilMGMTTVALGLIVLTLVAGCLLWTLQFHFEEFYPAAKDGISHSRRVNLLFLTLTGLITVGILAILFLEFQQLVTS
Ga0335079_1155433413300032783SoilLTLVAGCLLWTLLSHFEEFYPVAKDRVSYARRAGVLFRALTGLTTAGILVVLILELQQLISSPL
Ga0335077_1013641623300033158SoilMEITAVVVALMVLTLVAGCLLWTLLSHFEEFYPVAKDRVSYARRAGVLFRALTGLTTAGILVVLILELQQLISSPL


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