Metagenome / Metatranscriptome Family F100648

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100648
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	60 residues
Representative Sequence	PVYGPGSAERFAALAPSRRLDAPNLVDDVDTLDDLSRLRDRLGEHTRRVLATLSLESAA
Number of Associated Samples	88
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.353 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.745 % of family members)
Environment Ontology (ENVO)	Unclassified (27.451 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (36.275 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.63% β-sheet: 0.00% Coil/Unstructured: 64.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01933	CofD	91.18
PF03807	F420_oxidored	4.90
PF01996	F420_ligase	1.96
PF14833	NAD_binding_11	0.98
PF06737	Transglycosylas	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0391	Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family	Carbohydrate transport and metabolism [G]	91.18
COG1478	F420-0:Gamma-glutamyl ligase (F420 biosynthesis)	Coenzyme transport and metabolism [H]	1.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.35 %
Unclassified	root	N/A	17.65 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.35 %
Unclassified	root	N/A	17.65 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.35 %
Unclassified	root	N/A	17.65 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	69.61 %
Unclassified	root	N/A	17.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	69.61 %
Unclassified	root	N/A	17.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	64.71 %
Unclassified	root	N/A	17.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	55.88 %
Unclassified	root	N/A	17.65 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	55.88 %
Unclassified	root	N/A	17.65 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y01BVB1T	Not Available	504	Open in IMG/M
3300002568\|C688J35102_119976038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	833	Open in IMG/M
3300002568\|C688J35102_120273242	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300004157\|Ga0062590_101619106	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300004782\|Ga0062382_10252194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	790	Open in IMG/M
3300005147\|Ga0066821_1016274	Not Available	591	Open in IMG/M
3300005327\|Ga0070658_10454599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1104	Open in IMG/M
3300005327\|Ga0070658_11972325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	504	Open in IMG/M
3300005329\|Ga0070683_101000374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	803	Open in IMG/M
3300005435\|Ga0070714_101728964	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300005436\|Ga0070713_102392445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300005439\|Ga0070711_100859915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	772	Open in IMG/M
3300005439\|Ga0070711_102016233	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300005454\|Ga0066687_10537586	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300005456\|Ga0070678_100530247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1043	Open in IMG/M
3300005458\|Ga0070681_10733778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	904	Open in IMG/M
3300005538\|Ga0070731_10436954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	871	Open in IMG/M
3300005538\|Ga0070731_10901371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300005764\|Ga0066903_103936365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	797	Open in IMG/M
3300005764\|Ga0066903_104036528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	787	Open in IMG/M
3300005889\|Ga0075290_1043305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	607	Open in IMG/M
3300006806\|Ga0079220_10151747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1279	Open in IMG/M
3300006871\|Ga0075434_102313432	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300009012\|Ga0066710_100166815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3089	Open in IMG/M
3300009093\|Ga0105240_11092859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	849	Open in IMG/M
3300009093\|Ga0105240_11725079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300009137\|Ga0066709_102242090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	751	Open in IMG/M
3300010038\|Ga0126315_10295734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	998	Open in IMG/M
3300010045\|Ga0126311_11375473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300010304\|Ga0134088_10605475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	545	Open in IMG/M
3300010360\|Ga0126372_11293322	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300010371\|Ga0134125_11244486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	813	Open in IMG/M
3300010373\|Ga0134128_11418027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	765	Open in IMG/M
3300010373\|Ga0134128_12693416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300010375\|Ga0105239_13576539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	505	Open in IMG/M
3300010376\|Ga0126381_101417709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1004	Open in IMG/M
3300010379\|Ga0136449_102404493	Not Available	760	Open in IMG/M
3300010396\|Ga0134126_12955034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300012010\|Ga0120118_1162720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300012203\|Ga0137399_10639119	Not Available	895	Open in IMG/M
3300012210\|Ga0137378_11588884	Not Available	563	Open in IMG/M
3300012212\|Ga0150985_109250405	Not Available	598	Open in IMG/M
3300012212\|Ga0150985_119206597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	931	Open in IMG/M
3300012483\|Ga0157337_1013244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	676	Open in IMG/M
3300014166\|Ga0134079_10724033	Not Available	510	Open in IMG/M
3300014268\|Ga0075309_1133458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	624	Open in IMG/M
3300014497\|Ga0182008_10228247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	954	Open in IMG/M
3300014827\|Ga0120171_1033799	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300015161\|Ga0167623_1026350	Not Available	1394	Open in IMG/M
3300016319\|Ga0182033_10746902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	859	Open in IMG/M
3300017959\|Ga0187779_10151947	All Organisms → cellular organisms → Bacteria	1428	Open in IMG/M
3300017974\|Ga0187777_10527122	Not Available	827	Open in IMG/M
3300017974\|Ga0187777_11308510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	533	Open in IMG/M
3300018468\|Ga0066662_10005368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6284	Open in IMG/M
3300018482\|Ga0066669_10478206	Not Available	1075	Open in IMG/M
3300020070\|Ga0206356_10874630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300020070\|Ga0206356_11764608	All Organisms → cellular organisms → Bacteria	1377	Open in IMG/M
3300020077\|Ga0206351_10687092	Not Available	685	Open in IMG/M
3300021374\|Ga0213881_10250892	Not Available	786	Open in IMG/M
3300024232\|Ga0247664_1148795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300025905\|Ga0207685_10698246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	552	Open in IMG/M
3300025909\|Ga0207705_10360659	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1121	Open in IMG/M
3300025911\|Ga0207654_10818706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	673	Open in IMG/M
3300025919\|Ga0207657_11276054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	556	Open in IMG/M
3300025924\|Ga0207694_10710653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	848	Open in IMG/M
3300025928\|Ga0207700_10424808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1168	Open in IMG/M
3300025949\|Ga0207667_11626044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300025949\|Ga0207667_11991370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	541	Open in IMG/M
3300027908\|Ga0209006_11343651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300028608\|Ga0247819_11068607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300028819\|Ga0307296_10415533	Not Available	735	Open in IMG/M
3300030007\|Ga0311338_11056354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
3300031239\|Ga0265328_10196739	Not Available	765	Open in IMG/M
3300031251\|Ga0265327_10099139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1409	Open in IMG/M
3300031543\|Ga0318516_10239814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1049	Open in IMG/M
3300031573\|Ga0310915_10908809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	617	Open in IMG/M
3300031711\|Ga0265314_10332325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	842	Open in IMG/M
3300031716\|Ga0310813_11530120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	622	Open in IMG/M
3300031751\|Ga0318494_10048732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2234	Open in IMG/M
3300031778\|Ga0318498_10007494	All Organisms → cellular organisms → Bacteria	4261	Open in IMG/M
3300031793\|Ga0318548_10318900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	763	Open in IMG/M
3300031795\|Ga0318557_10210399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	888	Open in IMG/M
3300031805\|Ga0318497_10878894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	503	Open in IMG/M
3300031918\|Ga0311367_10162493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2349	Open in IMG/M
3300031996\|Ga0308176_11511208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	715	Open in IMG/M
3300032054\|Ga0318570_10072338	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300032064\|Ga0318510_10555628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300032066\|Ga0318514_10550944	Not Available	614	Open in IMG/M
3300032068\|Ga0318553_10193243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1061	Open in IMG/M
3300032074\|Ga0308173_10447270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1147	Open in IMG/M
3300032074\|Ga0308173_10895941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	820	Open in IMG/M
3300032074\|Ga0308173_11215542	Not Available	705	Open in IMG/M
3300032074\|Ga0308173_12309853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	507	Open in IMG/M
3300032805\|Ga0335078_11658495	Not Available	704	Open in IMG/M
3300032829\|Ga0335070_11994581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	522	Open in IMG/M
3300032954\|Ga0335083_10647681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	864	Open in IMG/M
3300032955\|Ga0335076_11569507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300033004\|Ga0335084_11249791	Not Available	741	Open in IMG/M
3300033158\|Ga0335077_12140601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300033486\|Ga0316624_11761325	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300034195\|Ga0370501_0040310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1455	Open in IMG/M
3300034268\|Ga0372943_0063562	All Organisms → cellular organisms → Bacteria	2094	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.41%
Host-Associated	Host-Associated	19.61%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.43%
Plants	Host-Associated → Plants	19.61%
Aquatic	Environmental → Aquatic	0.98%
Solid Waste	Engineered → Solid Waste	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Peat	Environmental → Terrestrial → Peat	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.98%
Grass	Engineered → Solid Waste → Grass	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.75%
Loam	Environmental → Terrestrial → Soil → Loam	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.98%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300012010	Permafrost microbial communities from Nunavut, Canada - A7_35cm_12M	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014827	Permafrost microbial communities from Nunavut, Canada - A3_80cm_18M	Environmental	Open in IMG/M
3300015161	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_05445120	2170459017	Switchgrass, Maize And Mischanthus Litter	LFVPLYGPGSAARFAALGPSRLVEAPNLVDDVDTVVDLARLHGRLGPHTLRILAALPLGAAA
C688J35102_1199760382	3300002568	Soil	LAFADPNLFQPVYGPGSAERFAALGPSTLLDVPNLIDDVDTLDDLARLNGRLGEHTRRVLRSLDLLSAA*
C688J35102_1202732421	3300002568	Soil	TNALALSDDALFEPLYGPGSAERFAALAPSTRLDAPNLMDDVDTPDDLARLEGRVGEHTRRVLATLHLESAA*
Ga0062590_1016191061	3300004157	Soil	PLYGPGSAARFAALAPSRTLEAPNLVDDVDTVEDLERLRGRLGPETRRLLARLHATAVA*
Ga0062382_102521942	3300004782	Wetland Sediment	AAHVFVSLYGSGSAARFAALAPSRAVDAPNLADDVDTVDDLRRVAGRVGPRTRRALATLGLGAAA*
Ga0066821_10162742	3300005147	Soil	FAALAPSRLVDAPNLMDDVDSVADLERLRERLGPRTLCVLASLHIAANSAGKAA*
Ga0070658_104545992	3300005327	Corn Rhizosphere	SAERFAALAPSIRIDAPNLMDDVDTPGDLARLAERLGTNTRHVLASLHLESAA*
Ga0070658_119723251	3300005327	Corn Rhizosphere	LFEPVYGPGSAERFAALGPSRSFQAPNLMDDVDTIDDLARLGDRLGAHTRRVLAALRLESAA*
Ga0070683_1010003741	3300005329	Corn Rhizosphere	LYGPGSAERYAALAPSRFVEAPNLIDDVDTLDDLARLSARLGPSTRRLLATLRVDAAA*
Ga0070714_1017289641	3300005435	Agricultural Soil	LFEPLYGPGSADRFAALAPSLRVDVPNLVDDVDTPADLDRLHDRLGPATRAALAALRLGAAA*
Ga0070713_1023924452	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GPGSARRFAALAPSTALDAPNLSDDVDTPDDLARLGDRLGEHTRRVLATLRLETAA*
Ga0070711_1008599151	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ERFAALGPYRTVEAPNLVDDVDIAADLERLRGRLGPRTRSVLTTLRAGAAA*
Ga0070711_1020162332	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ALSHDELFEPLYAPGSPGRYAALAPSALVDAPSRIDDVDTLADLTRLAERLGPRTRALFDALRLGRAA*
Ga0066687_105375862	3300005454	Soil	FEPLYGPGSAERFAALAPSRLVDAPNIVDDVDTFADLDRLEDRLGAATRRVLAALRREAAA*
Ga0070678_1005302471	3300005456	Miscanthus Rhizosphere	AGSADRFAALAPSRRLDVPNLVDDVDTLDDVARLRDRLGQHTRRALDVLDLQSAA*
Ga0070681_107337782	3300005458	Corn Rhizosphere	SQELFEPLYGPGSAQRFAASAPSRLLEVPNLVADVDTLDDLERLRGRLGPNTARLLARLPTTTGAAA*
Ga0070731_104369542	3300005538	Surface Soil	SAARFCALAPSRIVDSPNLVDDVDTLADLERVGPRAGPNTRRVLAALRTEAAA*
Ga0070731_109013711	3300005538	Surface Soil	GSAERFEALGPSRRVEAPNLMDDVDTLDDLSRLALRLGPLTRAVLATVHLGAAA*
Ga0066903_1039363651	3300005764	Tropical Forest Soil	VYGPGSAERFAALGPSLTVEAPNLMDDVDTAADLERLRGRLGPRTRSVLTTLRAGEAA*
Ga0066903_1040365282	3300005764	Tropical Forest Soil	LFAPVYGPGSAARFEALAPSRTVALPNLVDDVDTVADLERLEPRLGARTRHALASLRTGAAA*
Ga0075290_10433052	3300005889	Rice Paddy Soil	AYGSGSAERFAALGPSRIVDAPNLIDDVDTLADLERLAGRLGRHTSAALEALRAGSPR*
Ga0079220_101517473	3300006806	Agricultural Soil	RFAALAPSRSVDVPNLIDDVDTLGDLARLVRRLGPSTRGVLASLHIGEAA*
Ga0075434_1023134322	3300006871	Populus Rhizosphere	APLYGPGSAARFAALAPSRTLEVPNLIDDVDTIADLERLSGRLGPKTRRAVARLRAGALA
Ga0066710_1001668155	3300009012	Grasslands Soil	PLYGPGSAARFAGLAPSRALDAPNLMDDVDTVADLERLRGRLGPKTRRVFTRLQAGAAA
Ga0105240_110928591	3300009093	Corn Rhizosphere	LSSPDLFVPVYGPGSAARFAALAPSRTVEAPNLIDDVDAVADLERLLGRLGPHTRSAFAALQGELDYRGAAA*
Ga0105240_117250791	3300009093	Corn Rhizosphere	YGPGSAERFAALAPFCLLDVPNLIDDVDTVDDLKRLRARLGVHTSKVLASLHLGAAA*
Ga0066709_1022420901	3300009137	Grasslands Soil	VSLFAPVYGPGSAARFAALAPARHFDVPNLVDDVDTLDDLARLGDRLGVHTRRVLATLDLPSAA*
Ga0126315_102957341	3300010038	Serpentine Soil	SAERFAALGPSQRVDAPNLVDDVDTVDDLARLEPRLGPHTRRAFASLRRRAA*
Ga0126311_113754732	3300010045	Serpentine Soil	ALASADLFQPLYGPGSAERFAALGPSQRVDAPNLVDDVDTVDDLVRLAPRLGSHTRRAFASLRRRAA*
Ga0134088_106054752	3300010304	Grasslands Soil	DLFEPLYGPGSAERFAALGPWLGVNAPNLSCDVDTVADLRRLESRLGPHTRRALAALRVEAAA*
Ga0126372_112933221	3300010360	Tropical Forest Soil	LSSAGLFVPLYGPGSAERFAALAPSRLVDAPNLVDDVDAVADLERVRDRLGPRTSTVLASLRGAGNPAGKAA*
Ga0134125_112444861	3300010371	Terrestrial Soil	RLFEPVYGPGSAERFAALAPSRRLDAPNLMDDVDTLDDLARLRDRLGEHTRRVLLALDLPSAA*
Ga0134128_114180272	3300010373	Terrestrial Soil	AELFAPLYGPGSAERFAALAPSRLLDVPNLIDDVDTVDDLKRLRARLGVHTSKVLASLHLGAAA*
Ga0134128_126934162	3300010373	Terrestrial Soil	FEPVYGPGSAARFAALAESRRLDAPNLMDDGDTLDDLARLRDRLGEHTRRVLAALDLPSAA*
Ga0105239_135765392	3300010375	Corn Rhizosphere	DPSLFEPVYGPGSAERFATLGPTTVLDVPNLIDDVDALDDLARLQGRLGAHTRRVLASLDLPSAA*
Ga0126381_1014177091	3300010376	Tropical Forest Soil	PGSAERFAALGRSLRFEAPNLMDDVDVAADLERLRGRLGPRTRSVLTTLRAGAAA*
Ga0136449_1024044932	3300010379	Peatlands Soil	PGSAARFAALAGSRVVDTPNLVDDVDTLADLERVRGRLGANTRSALISLHVGAAA*
Ga0134126_129550342	3300010396	Terrestrial Soil	TNALAFADPSLFEPVYGPGSAERFAALGPSTTLDAPNLIDDVDTLDDLVRLEGRVGKHTRRVLVSLNLQSAA*
Ga0120118_11627201	3300012010	Permafrost	PGRAKRFAALGPSTLLDAPNLIDDVDTLDDLIRLAGRVGENTRRVLASLDLLSAA*
Ga0137399_106391192	3300012203	Vadose Zone Soil	LFEPVYGPGSAERFARLAPSTRLEAPNLIDDVDTPGDLARLGERLGEHTRRVLASLRLESAA*
Ga0137378_115888841	3300012210	Vadose Zone Soil	PGSADRFAALAPSRRLDAPNLMDDVDTLADLARVASRLGPNTRAVLAWLREAA*
Ga0150985_1092504052	3300012212	Avena Fatua Rhizosphere	LSSQELYAPLYGAGSAARFAALAPSRMLGVPNLVDDVDTVEDLERLRGRLGPETRRVVGRLHAGAAA*
Ga0150985_1192065971	3300012212	Avena Fatua Rhizosphere	VFEPLYGPGSAERFAALAPSTRLDAPNLMDDVDTPDDLARLEGRVGEHTRRVLATLHLESAA*
Ga0157337_10132442	3300012483	Arabidopsis Rhizosphere	GPGSAARFAALAPSRMVDSPNLIEDVDTLDDLERLTPRLGPHTRAALSKLLGAAA*
Ga0134079_107240332	3300014166	Grasslands Soil	PELYVPLYGAGSAARFAALAPSRMLGAPNLVDDVDTVEDLERLRGRLGPETRRVVGRLHAGAAA*
Ga0075309_11334581	3300014268	Natural And Restored Wetlands	ALSSAALFKPVYGPGSAARFAALAPALTVESPNLVDDVDTPEALERLRPRLGPRTLRVLDALRIGAAA*
Ga0182008_102282472	3300014497	Rhizosphere	DAGLFEPVYGPGSAERFAALAESRTLDDPNLADDVDTVEDLVRLASRLGRNTRRVLASLRLESAA*
Ga0120171_10337991	3300014827	Permafrost	GPGSAERFAALAPSRVVNAPNLIDDVDTLDDLLRLASRVGPHTQRALRSLHLGAAA*
Ga0167623_10263502	3300015161	Glacier Forefield Soil	DSPNLFEPLYGPGSAERYAALGPSRRVDAPNLVDDVDTLADLARIEDRLGPHTRGALRALRLEAAA*
Ga0182033_107469021	3300016319	Soil	PSRRVDAPNLMDDVDTVSDLDRLRERLGPRTRRVLRTRIIATLGAGAAA
Ga0187779_101519471	3300017959	Tropical Peatland	ALALSGEQLFEPVYGSGSAARFAELAECRRLDAPNLRDDVDTLADLARVARRTGANTRRVLPSLRLGAAA
Ga0187777_105271222	3300017974	Tropical Peatland	ALALADGALFRPVYGAGSAERFAALGPSRRLDAPNLADDVDTVADLVRLRGRLGEHTRLVLAALRLETAA
Ga0187777_113085101	3300017974	Tropical Peatland	GSAERFAALAPSRRVDAPNLMDDVDTVDDLDRLRRRLGPRTRRVLATLHVGAAA
Ga0066662_100053681	3300018468	Grasslands Soil	PLYGPGSAGRFAALGPSTALDAPNLMDDVDTPDDLARLGDRLGEHTRRVLATLRLETAA
Ga0066669_104782061	3300018482	Grasslands Soil	QELFAPLYGPGSAARFAALAPSRALDVPNLIDDVDTVADLERLRGRLGPKTRRVFTRLQAGAAA
Ga0206356_108746302	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	PGSAERFAALGPSTVLDAPNLVDDVDTLDDLVRLKGRLGVHTRGVLAALDLQSAA
Ga0206356_117646081	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	AERFAALGPSTILDAPNLIDDVDTLDDLVRLEGRLGKHTRRVLVSLDLQSAA
Ga0206351_106870922	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	LFEPVYGPGSAERFATLGPTTVLDVPNLIDDVDTLDDLARLKGRLGKHTRRVLEALDLPFAA
Ga0213881_102508922	3300021374	Exposed Rock	GPGSADRFAALAPSLVLDAPNLMDDVDTLDDLVRLGGRLGAHTRRALASLDLPSAA
Ga0247664_11487951	3300024232	Soil	VYGPGSAARFAGLAETRQLEAPNLMDDVDAPGDLARLVGRLGEHTRRVLTALRLETAA
Ga0207685_106982462	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	EEGLFEPVYGPGSADRFAALAPSRRLDAPNLMDDVDMPADLARLGPRVGEHTRRVLASLRLEPAA
Ga0207705_103606592	3300025909	Corn Rhizosphere	SAERFAALAPSIRIDAPNLMDDVDTPGDLARLAERLGTNTRHVLASLHLESAA
Ga0207654_108187062	3300025911	Corn Rhizosphere	DAGLFAPVYGPGSAERFAALGPSRVLDAPNLVDDVDTLDDLTRLEGRLGEHTRRVLASLDLQSAA
Ga0207657_112760541	3300025919	Corn Rhizosphere	FEPVYGPGSAERFAALGPSRSFQAPNLMDDVDTIDDLARLGDRLGAHTRRVLAALRLESA
Ga0207694_107106531	3300025924	Corn Rhizosphere	GSAERFAALGPSTVLDAPNLIDDVDTLDDLTRLQGRLGEHTGRVLDSLDLQSAA
Ga0207700_104248083	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	PGSAERFGALAESRRLDSPNLMDDVDATDDLARLEARLGEHTRRVLAALRLETAA
Ga0207667_116260442	3300025949	Corn Rhizosphere	PGSAERFAALAPSRLLDVPNLIDDVDTVDDLKRLRARLGVHTSKVLASLHLGAAA
Ga0207667_119913702	3300025949	Corn Rhizosphere	SLFEPVYGPGSAERFATLGPTTVLDVPNLIDDVDTLDDLARLQGRLGAHTRRVLASLDLPSAA
Ga0209006_113436511	3300027908	Forest Soil	SLFEPVYGPGSAERFEALGPSRRVDAPNLICDVDTLDDLARLALRVGPMTRAVLATVHLGAAA
Ga0247819_110686072	3300028608	Soil	RSSPDLFQPVYGPGSAARFAALAPSRTLDAPNLVDDVDELADLERVGPRVGPKTRVVLAALRLGEAA
Ga0307296_104155332	3300028819	Soil	LYGPGSAARFAALAPSLVLDAPNLIDDVDTVDDLKRLRTRLGAHTSRVFASLHLGAAA
Ga0311338_110563542	3300030007	Palsa	PDQFRPLYGPGSAARFAALAGSRRVDAPNLIDDVDTLADLERVCARLGPHTRAVLASLRLCAAA
Ga0265328_101967392	3300031239	Rhizosphere	EPVYGPGSAERFAALGEARLLDTPNLMDDVDTPGDLARLGDRLGEHTRRVLAALRLESAA
Ga0265327_100991391	3300031251	Rhizosphere	GSASRFAALGPSRQVDAPNLVDDVDTIADLERLADRVGPRTRRVLTTLRAGAAA
Ga0318516_102398141	3300031543	Soil	GSAQRFAALGPSRTVEAPNLMDDVDTATDLERLRGRLGPRTRSALTTLRAGAAA
Ga0310915_109088092	3300031573	Soil	FEPCYGPGSAERFAAHAPSRRVEAPNLMDDVDTLADLARLAPRLGTRSRSVLESLRQEAA
Ga0265314_103323252	3300031711	Rhizosphere	YAPVYGPGSAARFAALAPSRTVDAPNLIDDVDTVADLERLRGRLGGHTRKVLESLRVGAA
Ga0310813_115301202	3300031716	Soil	YGPGSAERFAALAPSIRIDAPNLMDDVDTPGDLARLAERLGPNTKRVLASLHLESAA
Ga0318494_100487324	3300031751	Soil	VYGPGSAARFAGLAECRRLDAPNLRDDVDTLADLARIARRTGAHTRQILPSLRLGAAA
Ga0318498_100074946	3300031778	Soil	LALSSERLFEPVYGPGSAARFAGLAECRRLDAPNLRDDVDTLADLARIARRTGAHTRQILPSLRLGAAA
Ga0318548_103189002	3300031793	Soil	EGLFEPCYGPGSAERFAALAPSRRVEAPNLMDDVDTLADLARLAPRLGTRSRSVLESLRQEAA
Ga0318557_102103991	3300031795	Soil	GERFAALAPSRRVDAPNLMDDVDTVSDLDRLRERLGPRTRRVLRTRIIATLGAGAAA
Ga0318497_108788941	3300031805	Soil	AERFAALAPSRRVDAPNLMDDVDTVSDLDRLRERLGPRTRRVLRTRIIATLGAGAAA
Ga0311367_101624931	3300031918	Fen	NALAFSDERLFEPVYGPGSAERFAALADSRLLDSPNLMDDVDAPEDLARLGARLGERTRRVLTELRLETAA
Ga0308176_115112082	3300031996	Soil	FEPVYGPGSAERFAALAPSRRLDAPNLMDDVDTLADLLRLRDRLGVHTRRVLASLDLPYA
Ga0318570_100723383	3300032054	Soil	SSERLFEPVYGPGSAARFAGLAECRRLDAPNLRDDVDTLADLARIARRTGAHTRQILPSLHLGAAA
Ga0318510_105556282	3300032064	Soil	DEGLFEPCYGPGSAERFAALAPSRRVEAPNLMDDVDTLADLARLAPRLGTRSRSVLESLRQEAA
Ga0318514_105509441	3300032066	Soil	GSAGRFATLGRSRLLELPNLVDDVDTVADLERLESRLGPHTRRVLASLRAGAAA
Ga0318553_101932432	3300032068	Soil	DVQLFEPCYGPGSAGRFAALGPSLRVDAPNLMDDVDTLADLSRLASRLGPRSRRVLDALREKAA
Ga0308173_104472702	3300032074	Soil	DARLFEPVYGPGSAERFAGLAPSLRLDAPNLIDDVDTVDDLARLGTRVGAHTRRVLARLRLEPAA
Ga0308173_108959411	3300032074	Soil	TNALGLGDERLFEPVYGPGSAGRFEALGPSRALDTPNLMDDVDTVDDLVRLAARLGKHTRRVLSGLRLETAA
Ga0308173_112155421	3300032074	Soil	PVYGPGSAERFAALAPSRRLDAPNLVDDVDTLDDLSRLRDRLGEHTRRVLATLSLESAA
Ga0308173_123098531	3300032074	Soil	DLFEPVYGPGSAARFAALGDARFVDAPNLVDDVDTPGDLLRLGARLGAHTRRVVAALRLESAA
Ga0335078_116584951	3300032805	Soil	SADLFAPLYGPGSAARFAALAPSRALAVPNLMDDVDTVDDLERLRVRAGANTRAVLRRLQLGAAA
Ga0335070_119945812	3300032829	Soil	YGPGSAERFAALAPSRLFDAPNLADDVDTTADLARLRGRLGARTQQVVATLRLETAA
Ga0335083_106476811	3300032954	Soil	AALAPARLFDSPNLADDVDTIADLARLRGRVGEHTRRVLTALRLETAA
Ga0335076_115695071	3300032955	Soil	LSDGALFKPVYGAGSAERFAALGPSRLLDAPNLADDVDTVADLMRLRGRLGEHTRRVLAELRLETAA
Ga0335084_112497911	3300033004	Soil	FAALAPSRLFDSPNLADDVDTTADLARLRGRVGGCTQRVLATLRLETAA
Ga0335077_121406012	3300033158	Soil	FEPVYGPGSAERFAALGPSLRLDAPNLIDDVDTLGDLVRLQERLGANTRRVLLALDLPSA
Ga0316624_117613251	3300033486	Soil	EPVYGPGSAGRFAALAPARLLDAPNLMDDVDAPVDLARLGARLGEHTRRVLAELRLETAA
Ga0370501_0040310_1283_1453	3300034195	Untreated Peat Soil	GPGSADRFAALAPSRYLAAPNLIDDVDALDDLVRLGPRLGEHTRRVLAELRLETAA
Ga0372943_0063562_2_220	3300034268	Soil	TNALALSDERLFEPVYGPGSAERFAALAEARLLDTPNLMEDVDAPDDLARLGPRLGEHTRRVLAALRLEPAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100648

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences