Metagenome / Metatranscriptome Family F100645

Basic Information
Family ID	F100645
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	53 residues
Representative Sequence	GRGAYRTPVNTAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVVLPRL
Number of Associated Samples	95
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Most Common Taxonomy
Group	Bacteria (72.549 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (8.823 % of family members)
Environment Ontology (ENVO)	Unclassified (38.235 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.020 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.33% β-sheet: 5.33% Coil/Unstructured: 85.33%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01161	PBP	7.84
PF00463	ICL	6.86
PF03965	Penicillinase_R	3.92
PF00133	tRNA-synt_1	2.94
PF12483	GIDE	2.94
PF05685	Uma2	2.94
PF04545	Sigma70_r4	1.96
PF05626	DUF790	1.96
PF05569	Peptidase_M56	1.96
PF00939	Na_sulph_symp	1.96
PF07586	HXXSHH	0.98
PF00171	Aldedh	0.98
PF00009	GTP_EFTU	0.98
PF01568	Molydop_binding	0.98
PF12697	Abhydrolase_6	0.98
PF09594	GT87	0.98
PF00753	Lactamase_B	0.98
PF00069	Pkinase	0.98
PF03631	Virul_fac_BrkB	0.98
PF01680	SOR_SNZ	0.98
PF03227	GILT	0.98
PF13515	FUSC_2	0.98
PF04191	PEMT	0.98
PF07992	Pyr_redox_2	0.98
PF00535	Glycos_transf_2	0.98
PF00892	EamA	0.98
PF13646	HEAT_2	0.98
PF00732	GMC_oxred_N	0.98
PF07228	SpoIIE	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	7.84
COG2224	Isocitrate lyase	Energy production and conversion [C]	6.86
COG3682	Transcriptional regulator, CopY/TcrY family	Transcription [K]	3.92
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	3.92
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.94
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	2.94
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.94
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.94
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.94
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	1.96
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	1.96
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.98
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.98
COG0214	Pyridoxal 5'-phosphate synthase subunit PdxS	Coenzyme transport and metabolism [H]	0.98
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.98
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.98
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.55 %
Unclassified	root	N/A	27.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.33 %
Unclassified	root	N/A	27.45 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	15.69 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	11.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3.92 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	15.69 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	11.76 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	3.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	11.76 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	7.84 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	5.88 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	3.92 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.96 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	11.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.84 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	3.92 %
Dermacoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae	1.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Nannocystineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae	0.98 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.98 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.98 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	11.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.84 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	2.94 %
Luteipulveratus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus	1.96 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.98 %
Kofleriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae	0.98 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.98 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	11.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.84 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	2.94 %
Luteipulveratus mongoliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus mongoliensis	1.96 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.98 %
unclassified Kofleriaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae	0.98 %
unclassified Polyangiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae	0.98 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.45 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	11.76 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.84 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	2.94 %
Luteipulveratus mongoliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus mongoliensis	1.96 %
Kofleriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	0.98 %
Polyangiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	0.98 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.98 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.98 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459015\|G14TP7Y02IM69T	Not Available	581	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c1944848	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300000956\|JGI10216J12902_111281617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	674	Open in IMG/M
3300004081\|Ga0063454_101191597	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	629	Open in IMG/M
3300004114\|Ga0062593_102860689	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551	Open in IMG/M
3300005093\|Ga0062594_102218566	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	594	Open in IMG/M
3300005260\|Ga0074072_1050555	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300005327\|Ga0070658_11690599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus mongoliensis	548	Open in IMG/M
3300005332\|Ga0066388_100646794	All Organisms → cellular organisms → Bacteria	1673	Open in IMG/M
3300005337\|Ga0070682_100545700	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	906	Open in IMG/M
3300005337\|Ga0070682_102040753	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	505	Open in IMG/M
3300005343\|Ga0070687_101226907	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	554	Open in IMG/M
3300005355\|Ga0070671_101846220	Not Available	537	Open in IMG/M
3300005365\|Ga0070688_100609719	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	836	Open in IMG/M
3300005439\|Ga0070711_100706385	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300005459\|Ga0068867_102033340	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	543	Open in IMG/M
3300005534\|Ga0070735_10471974	Not Available	748	Open in IMG/M
3300005535\|Ga0070684_100572090	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300005546\|Ga0070696_101247037	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300005563\|Ga0068855_101316246	Not Available	747	Open in IMG/M
3300005616\|Ga0068852_101027297	Not Available	843	Open in IMG/M
3300005616\|Ga0068852_101797532	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	635	Open in IMG/M
3300005618\|Ga0068864_100320219	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300005718\|Ga0068866_10455541	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300005843\|Ga0068860_101709148	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300005844\|Ga0068862_102793026	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300006806\|Ga0079220_10920826	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	681	Open in IMG/M
3300006871\|Ga0075434_100933365	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300009156\|Ga0111538_14002310	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300009177\|Ga0105248_12848505	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	551	Open in IMG/M
3300009545\|Ga0105237_10465138	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300010360\|Ga0126372_12536287	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	564	Open in IMG/M
3300010362\|Ga0126377_13273583	Not Available	524	Open in IMG/M
3300010397\|Ga0134124_11016049	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300010400\|Ga0134122_12445025	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300010877\|Ga0126356_11424579	All Organisms → cellular organisms → Bacteria	1728	Open in IMG/M
3300011435\|Ga0137426_1189169	Not Available	613	Open in IMG/M
3300012212\|Ga0150985_103808955	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	528	Open in IMG/M
3300012469\|Ga0150984_101130809	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300012532\|Ga0137373_10207612	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1609	Open in IMG/M
3300012929\|Ga0137404_12185413	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	517	Open in IMG/M
3300013296\|Ga0157374_10568334	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300013296\|Ga0157374_11921036	Not Available	618	Open in IMG/M
3300013296\|Ga0157374_12544404	Not Available	539	Open in IMG/M
3300013297\|Ga0157378_10993844	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300014325\|Ga0163163_10073572	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3408	Open in IMG/M
3300014968\|Ga0157379_11686021	Not Available	621	Open in IMG/M
3300015371\|Ga0132258_13431024	Not Available	1087	Open in IMG/M
3300015372\|Ga0132256_102918974	Not Available	575	Open in IMG/M
3300015374\|Ga0132255_100784527	All Organisms → cellular organisms → Bacteria	1419	Open in IMG/M
3300016294\|Ga0182041_12340849	Not Available	500	Open in IMG/M
3300017937\|Ga0187809_10336356	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300018083\|Ga0184628_10033779	Not Available	2555	Open in IMG/M
3300021358\|Ga0213873_10255922	Not Available	556	Open in IMG/M
3300021384\|Ga0213876_10594686	Not Available	589	Open in IMG/M
3300021404\|Ga0210389_10316070	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300021405\|Ga0210387_10062872	All Organisms → cellular organisms → Bacteria	3017	Open in IMG/M
3300024288\|Ga0179589_10475069	Not Available	578	Open in IMG/M
3300025899\|Ga0207642_10497223	Not Available	746	Open in IMG/M
3300025909\|Ga0207705_11211169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus mongoliensis	579	Open in IMG/M
3300025916\|Ga0207663_10213278	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300025917\|Ga0207660_11204665	Not Available	616	Open in IMG/M
3300025924\|Ga0207694_11795121	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300025926\|Ga0207659_11344093	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	613	Open in IMG/M
3300025931\|Ga0207644_11424426	Not Available	582	Open in IMG/M
3300025941\|Ga0207711_11653348	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	584	Open in IMG/M
3300025960\|Ga0207651_10626406	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300025986\|Ga0207658_10236418	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1545	Open in IMG/M
3300026078\|Ga0207702_11769927	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	610	Open in IMG/M
3300026089\|Ga0207648_11528761	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	627	Open in IMG/M
3300026095\|Ga0207676_10300983	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1464	Open in IMG/M
3300028380\|Ga0268265_11805362	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	618	Open in IMG/M
3300028381\|Ga0268264_12314128	Not Available	544	Open in IMG/M
3300028802\|Ga0307503_10385542	Not Available	728	Open in IMG/M
3300028861\|Ga0302259_1000292	All Organisms → cellular organisms → Bacteria	9853	Open in IMG/M
3300028870\|Ga0302254_10050150	Not Available	1503	Open in IMG/M
3300029923\|Ga0311347_10812929	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	568	Open in IMG/M
3300029980\|Ga0302298_10285994	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	548	Open in IMG/M
3300029984\|Ga0311332_10123820	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300029984\|Ga0311332_11759469	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	504	Open in IMG/M
3300030010\|Ga0302299_10185920	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300030294\|Ga0311349_10176412	All Organisms → cellular organisms → Bacteria	2010	Open in IMG/M
3300031200\|Ga0307496_10009810	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1213	Open in IMG/M
3300031238\|Ga0265332_10222143	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300031250\|Ga0265331_10146469	All Organisms → cellular organisms → Bacteria → Proteobacteria	1073	Open in IMG/M
3300031507\|Ga0307509_10815464	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	598	Open in IMG/M
3300031616\|Ga0307508_10324548	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1131	Open in IMG/M
3300031679\|Ga0318561_10578469	Not Available	618	Open in IMG/M
3300031712\|Ga0265342_10554706	Not Available	582	Open in IMG/M
3300031715\|Ga0307476_10081992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2253	Open in IMG/M
3300031723\|Ga0318493_10061114	All Organisms → cellular organisms → Bacteria → Proteobacteria	1812	Open in IMG/M
3300031724\|Ga0318500_10719703	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → unclassified Polyangiaceae → Polyangiaceae bacterium	509	Open in IMG/M
3300031771\|Ga0318546_11202800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300031805\|Ga0318497_10291252	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300031947\|Ga0310909_11241634	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	601	Open in IMG/M
3300032035\|Ga0310911_10402492	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	792	Open in IMG/M
3300032074\|Ga0308173_10986294	Not Available	782	Open in IMG/M
3300032074\|Ga0308173_11071011	Not Available	751	Open in IMG/M
3300032074\|Ga0308173_11604147	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300032076\|Ga0306924_11743881	Not Available	651	Open in IMG/M
3300032180\|Ga0307471_100979244	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300034191\|Ga0373909_0215340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	609	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.92%
Host-Associated	Host-Associated	44.12%
Engineered	Engineered	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.98%
Plants	Host-Associated → Plants	44.12%
Aquatic	Environmental → Aquatic	2.94%
Solid Waste	Engineered → Solid Waste	0.98%
Bioremediation	Engineered → Bioremediation	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.67%
Peat	Environmental → Terrestrial → Peat	7.84%
Roots	Host-Associated → Plants → Roots	3.92%
Sediment	Environmental → Aquatic → Sediment	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Grass	Engineered → Solid Waste → Grass	0.98%
Metal	Engineered → Bioremediation → Metal	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.76%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Composting	Engineered → Solid Waste → Grass → Composting	0.98%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.84%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.98%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	7.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.98%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028861	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4	Environmental	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029980	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_3	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034191	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1	Engineered	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100645

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4PV_03301690	2170459015	Switchgrass, Maize And Mischanthus Litter	NIDDEYWATSRRPAAESHHGYYRTPTNRAGIDLSDAVYASLGLHDNDVVEWRFVHRGYLVLPWL
ICChiseqgaiiDRAFT_19448481	3300000033	Soil	PAAERGRGAYRTPVNRAGIDLSDATFALLGLRDNDWVEWRFVHQGYLIMPWL*
JGI10216J12902_1112816172	3300000956	Soil	AERGRGTFRKPANPAGIDLSDATFAQLGLADNDYVEWRFVHRGYVPLPRLGTP*
Ga0063454_1011915972	3300004081	Soil	VDDAYWSNGQRPAAERGRGSYRSPVNRAGIDLSDATFATLGLRDNDMVEWRFVHRGYVPFPRLAAAR*
Ga0062593_1028606892	3300004114	Soil	DDYWSNGQRPAAERGRGTYRTPVNRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPLPRLAASSPRD*
Ga0062594_1022185661	3300005093	Soil	TSDDYWSSGQRPAAEHGRGAYRTPVNSAGIDLSDATFALLGLRDNDWVEWRFVHRGYVPLPRVAIGRH*
Ga0074072_10505551	3300005260	Soil	ASERGHGAYRTPVNRAGIDLSDPVFAELGMRDNDEVDWRFVHRDFTILPRL*
Ga0070658_116905992	3300005327	Corn Rhizosphere	VNPAGIDLSDPVFAELGLRDNDTVEWRFVHRDFTLLPSL*
Ga0066388_1006467943	3300005332	Tropical Forest Soil	YRTPVNTAGIDLSDAVFAALGLPDNDLVDWRFVHRGYVTWPRL*
Ga0070682_1005457001	3300005337	Corn Rhizosphere	TYRTPVNRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPLPRLASGH*
Ga0070682_1020407531	3300005337	Corn Rhizosphere	AERGRGSYRTPANRAGIDLSDATFATLGLRDNDYVEWRFVHRGYIPFPRLAATGRW*
Ga0070687_1012269072	3300005343	Switchgrass Rhizosphere	IDDAYWETGQRPAAERGRGAYRTPVNRAGIDLSDGVFFALGLRDNDYPEWRFVHRGYVALPRL*
Ga0070671_1018462202	3300005355	Switchgrass Rhizosphere	GRGAYRTPANRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRMGTSTSTQSRR*
Ga0070688_1006097191	3300005365	Switchgrass Rhizosphere	PAAERGRGTFRTPANRAGIDLSDATFALLGLRDNDWVEWRFVHRGYVPLPRVAIGRH*
Ga0070711_1007063853	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	DDPYWEHDARPASERGRGAYRTPVNHAGIDLSDPVFAELGLRDNDQVEWRFVHRDFTILPRL*
Ga0068867_1020333402	3300005459	Miscanthus Rhizosphere	RGRGAYRTPANRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRLAGRAILDR*
Ga0070735_104719742	3300005534	Surface Soil	RTPVNTAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVVLPRL*
Ga0070684_1005720901	3300005535	Corn Rhizosphere	AYRTPVNRAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVVLPRL*
Ga0070696_1012470372	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	DAYWVGSRRPAAERAVGKYRTPSNRAGIDLSNAVFAALGLHDNDWVEWRFVHQGYLILPTL*
Ga0068855_1013162462	3300005563	Corn Rhizosphere	GAYRTPVNRAGIDLSDPVFAELGMRDNDEVEWRFVHRDFTILPRL*
Ga0068852_1010272971	3300005616	Corn Rhizosphere	ASERGHGAYRTPVNRAGIDLSDPVFAELGMRDNDEVEWRFVHRDFTILPRL*
Ga0068852_1017975321	3300005616	Corn Rhizosphere	TPANRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRLAGRAILDR*
Ga0068864_1003202193	3300005618	Switchgrass Rhizosphere	YWEHDARPASERGRGAYRTPVNHAGIDLSDPVFAELGLRDNDQVEWRFVHRDFTILPRL*
Ga0068866_104555411	3300005718	Miscanthus Rhizosphere	RGRGAYRTPVNKAGIDLSDAVFAELGLADNDYVDWRFVHRDYVALPFL*
Ga0068860_1017091483	3300005843	Switchgrass Rhizosphere	YWERDARPASERGRGAYRTPVNMAGIDLSDAVFAALGLPDNDFVDWRFVHRGYVVLPWL*
Ga0068862_1027930261	3300005844	Switchgrass Rhizosphere	PWNVDDAYWERDARPASERGRGAYRTPVNTAGIDLSDAVFAELGLPDNDVVEWRFVRRGYTVLPRL*
Ga0079220_109208262	3300006806	Agricultural Soil	YWDHDARPASERGRGAYRTPVNPAGIDLSDAVFAELGLSNNDYVDWRFVHRDYVAWPVL*
Ga0075434_1009333651	3300006871	Populus Rhizosphere	RGRGTYRTPVNRAGIDLSDATFATLGLHDNDWVEWRFVHRGYIPLPRVAAGGPGDR*
Ga0111538_140023102	3300009156	Populus Rhizosphere	GTFRKPANPAGIDLSDATFASLGLRDNDYVEWRFVHRGYIPLPRLSLTPPR*
Ga0105248_128485052	3300009177	Switchgrass Rhizosphere	YRTPVNSAGIDLSDATFALLGLRDNDWVEWRFVHRGYVPLPRVAIGRH*
Ga0105237_104651383	3300009545	Corn Rhizosphere	WEHDARPASERGHGAYRTPVNRAGIDLSDPVFAELGMRDNDEVEWRFVHRDFTILPRL*
Ga0126372_125362871	3300010360	Tropical Forest Soil	GIDLSDAVFAALGLPDNDRVDWRFVHRGYVIWPRL*
Ga0126377_132735832	3300010362	Tropical Forest Soil	WETSRRPAAELGVGAYRKPVNPAGIDLSDATFAALQLADNDYLEWRFVHRGYVPLPRLSSP*
Ga0134124_110160493	3300010397	Terrestrial Soil	PAAERGRGAFRKPANPAGIDLSDAVYATLGLKDNDYLEWRFVHRGYVPLPRL*
Ga0134122_124450251	3300010400	Terrestrial Soil	WERDERPASERGRGYYRTPVNTAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVIWPRL*
Ga0126356_114245793	3300010877	Boreal Forest Soil	GPWNVDDAYWETDDRPASERSIGTYRTPVNIAGIDLSDAVFAALGLRDNDYVDWRFVHRDYVVLPKL*
Ga0137426_11891691	3300011435	Soil	ERGRGTFRTPANRAGIDLSDATFALLGLRDNDWGEWRFVHRGYVALPRVGVGPSP*
Ga0150985_1038089552	3300012212	Avena Fatua Rhizosphere	GYYRTPVNTAGIDLSDAVFAALGLPDNDVVEWRFVHRGYVVLPRL*
Ga0150984_1011308091	3300012469	Avena Fatua Rhizosphere	YRKPSNTAGIDLSDPVFAALGLRDNDYVDWRFLHRDYVVLPHL*
Ga0137373_102076121	3300012532	Vadose Zone Soil	RRPAAERSRGAYRTPSNRAGIDLSDPVFAALGLRDNDWVEWRFVHKGYLVLPWL*
Ga0137404_121854132	3300012929	Vadose Zone Soil	VNIAGIDLSDAVFAALGLPDNDVVEWRFVHRGYVVLPRL*
Ga0157374_105683343	3300013296	Miscanthus Rhizosphere	GRGAYRTPVNHAGIDLSDPVFAELGLRDNDQVEWRFVHRDFTILPRL*
Ga0157374_119210361	3300013296	Miscanthus Rhizosphere	NRAGIDLSDAVFHQLGLRDNDWVEWRFVHKGYLALPAL*
Ga0157374_125444042	3300013296	Miscanthus Rhizosphere	QRPAAERGRGAYRTPANRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRMATSTSTQSGR*
Ga0157378_109938441	3300013297	Miscanthus Rhizosphere	ARPASERGRGAYRTPVNHAGIDLSDPVFAELGLRDNDQVEWRFVHRDFTILPRL*
Ga0163163_100735724	3300014325	Switchgrass Rhizosphere	AAESHHGYYRTPTNRAGIDLSDAVYASLGLHDNDVVEWRFVHRGYLVLPWL*
Ga0157379_116860212	3300014968	Switchgrass Rhizosphere	ASERGRGAYRTPVNTAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVVLPRL*
Ga0132258_134310242	3300015371	Arabidopsis Rhizosphere	GRGTYRTPANRAGIDLSDATFATLGLRDNDWIEWRFVHRGYIPLPRLSAALSPRD*
Ga0132256_1029189743	3300015372	Arabidopsis Rhizosphere	PAAERGVGKYRTPSNRAGIDLSNAVFAELGLHDNDWVEWRFVHQGYMVLPWLSISNGY*
Ga0132255_1007845271	3300015374	Arabidopsis Rhizosphere	DDYWSGGHRPAAEQGRGTYRKPANNAGIDLSDATFATLGLRDNDYVEWRFVHRGYVPLPRLGVATTADSR*
Ga0182041_123408491	3300016294	Soil	PAAERGRGAFRRPANPAGIDLSDAVFASLGLADNDYLDWRFVHRGYVPLPRLAAAAGR
Ga0187809_103363561	3300017937	Freshwater Sediment	ERGRGSFRTPTNRSGIDLSDATFAALGLRDNSTLEWRFVHRGYIPLPRVAIPTGP
Ga0184628_100337792	3300018083	Groundwater Sediment	RTLANCAGIDLSDATFALLGLCDNDWVEWRFVHRGYVALPRVGLGPSP
Ga0213873_102559222	3300021358	Rhizosphere	TPVNKAGIDLSDAVFAELGLTDNDYVDWRFVHRDYVALPFL
Ga0213876_105946861	3300021384	Plant Roots	AYRTPVNTAGIDLSDAVFAELGLPDNDRVDWRFVEKGYVPLPEL
Ga0210389_103160703	3300021404	Soil	TNRAGIDLSDATFAALGLRDNSPVEWRFVHRGYIPLPRAAIASGP
Ga0210387_100628724	3300021405	Soil	AGIDLSDATFAALGLRDNSPVEWRFVHRGYIPLPRAAIAIGP
Ga0179589_104750692	3300024288	Vadose Zone Soil	RPPVNTAGIDLSDAVFADLGLRDNDGVDWRFVHRGYIALPRL
Ga0207642_104972232	3300025899	Miscanthus Rhizosphere	RGRGAYRTPVNKAGIDLSDAVFAELGLADNDYVDWRFVHRDYVALPFL
Ga0207705_112111691	3300025909	Corn Rhizosphere	VNPAGIDLSDPVFAELGLRDNDTVEWRFVHRDFTLLPSL
Ga0207663_102132781	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	DDPYWEHDARPASERGRGAYRTPVNHAGIDLSDPVFAELGLRDNDQVEWRFVHRDFTILPRL
Ga0207660_112046651	3300025917	Corn Rhizosphere	YWSGSRRPAAERSHGYYRTPSNRAGIDLSDAVFHALGLRDNDWVEWRFVHKGYLVLPWL
Ga0207694_117951211	3300025924	Corn Rhizosphere	DDYWSDSRRPASERNRGYYRSPTNRAGIDLSDAVFHQLGLRDNDWVEWRFVHKGYLALPA
Ga0207659_113440931	3300025926	Miscanthus Rhizosphere	RGRGAYRTPANRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRLAAGPR
Ga0207644_114244261	3300025931	Switchgrass Rhizosphere	GRGAYRTPANRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRMGTSTSTQSRR
Ga0207711_116533482	3300025941	Switchgrass Rhizosphere	YRTPVNSAGIDLSDATFALLGLRDNDWVEWRFVHRGYVPLPRVAIGRH
Ga0207651_106264062	3300025960	Switchgrass Rhizosphere	VNQAGIDLSDAVFAELGLSDNDYVDWRFVHRDYVAWPAL
Ga0207658_102364183	3300025986	Switchgrass Rhizosphere	AYRTPANRAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRMGTSTSTQSRR
Ga0207702_117699271	3300026078	Corn Rhizosphere	HHGYYRTPTNRAGIDLSDAVYASLGLHDNDVVEWRFVHRGYLVLPWL
Ga0207648_115287611	3300026089	Miscanthus Rhizosphere	RAGIDLSDATFATLGLRDNDFVEWRFVHRGYIPFPRLAGRAILDR
Ga0207676_103009831	3300026095	Switchgrass Rhizosphere	PYWEHDARPASERGRGAYRTPVNHAGIDLSDPVFAELGLRDNDQVEWRFVHRDFTILPRL
Ga0268265_118053621	3300028380	Switchgrass Rhizosphere	TFATLGLRDNDFVEWRFVHRGYIPFPRLAGRAILDR
Ga0268264_123141282	3300028381	Switchgrass Rhizosphere	ERGHGAYRTPVNTAGIDLSDAVFAALGLPDNDVVDWRFVHRKVVPDTAIQH
Ga0307503_103855422	3300028802	Soil	PVNRAGIDLSDATFATLGLRDNDTVEWRFVHRGYVPLPRLAIGNR
Ga0302259_100029210	3300028861	Fen	YRTPVNTAGIDLSDPVFAALGLPDNDYVDWRFVHRGYVALPHL
Ga0302254_100501503	3300028870	Fen	PVNKAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVALPRL
Ga0311347_108129293	3300029923	Fen	PASERGRGYYRTPVNKAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVALPRL
Ga0302298_102859941	3300029980	Fen	GRGYYRTPVNTAGIDLSDPVFAALGLPDNDYVDWRFVHRGYVALPHL
Ga0311332_101238203	3300029984	Fen	DRPASERGRGYYRTPVNKAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVALPRL
Ga0311332_117594692	3300029984	Fen	GAYRTPVNTAGIDLSDPVFAELDMRDNDVVEWRFVHRDFTVLPRL
Ga0302299_101859201	3300030010	Fen	ASERGRGAYRTPVNPAGIDLSDPVFAELDMRDNDVVEWRFVHRDFTVLPRL
Ga0311349_101764123	3300030294	Fen	GRGSFRNPTNHAGIDLSDATFAALGLRDNSPVEWRFVHRGYIPLPRAAIATGP
Ga0307496_100098101	3300031200	Soil	WERDGRPASERGHGAYRTPVNTAGIDLSDAVFAELDLRDNDMVDWRFVHRDYVVLPRL
Ga0265332_102221431	3300031238	Rhizosphere	RPASERGRGAYRTPVNRAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVVLPRL
Ga0265331_101464692	3300031250	Rhizosphere	PWNIDDAYWETGARPAAERGRGAYRTPANHAGIDLSDGVFFALGLRDNDYLEWRFVHRGYIPLPRM
Ga0307509_108154642	3300031507	Ectomycorrhiza	RGRGRYRRPVNTAGIDLSDAVFAALGLPDNDIVEWRFVHRDYVVLPRL
Ga0307508_103245482	3300031616	Ectomycorrhiza	GPWNVDDAYWEHAARPASERGRGAYRTPVNTAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVVLPRL
Ga0318561_105784691	3300031679	Soil	GQRPAAERGRGAFRRPANPAGIDLSDAVFASLGLADNDYLDWRFVHRGYVPLPRLAAAAG
Ga0265342_105547061	3300031712	Rhizosphere	PWNVDDDYWATGRRPAAERGSGSYRRPTNQAGIDLSDATFAALGLRDNTTLEWRFVHRGYIPLPRVAIPTGP
Ga0307476_100819923	3300031715	Hardwood Forest Soil	AYRTPVNRAGIDLSDAVFATLGLPDNDVVDWRFVHRGYVVLPRL
Ga0318493_100611141	3300031723	Soil	YWRTGQRPAAERGRGAFRRPANPAGIDLSDAVFASLGLADNDYLDWRFVHRGYVPLPRLAAAAGR
Ga0318500_107197032	3300031724	Soil	AAERGRGAFRRPANPAGIDLSDAVFASLGLADNDYLDWRFVHRGYVPLPRLAAAAGR
Ga0318546_112028002	3300031771	Soil	AFRRPANPAGIDLSDAVFASLGLADNDYLDWRFVHRGYVPLPRLAAAAGR
Ga0318497_102912521	3300031805	Soil	ESSRRPASERGQGTYRRPTNPAGIDLSDAVFASLGMHNNDVVEWRFVHRGYIPLPRVSIAAGLSAVSPSPEPR
Ga0310909_112416341	3300031947	Soil	QRPASERGRGAFRRPANPAGIDLSDAVFASLGLADNDYLDWRFVHRGYVPLPRLAAAAGR
Ga0310911_104024921	3300032035	Soil	NVDDAYWRTGQRPAAERGRGAFRRPANPAGIDLSDAVFASLGLADNDYLDWRFVHRGYVPLPRLAAAAGR
Ga0308173_109862941	3300032074	Soil	PSNAAGIDLSDATFTALGMRDNAILEWRFVHRGYIPLPRVSIPARVQ
Ga0308173_110710112	3300032074	Soil	DARPASERGRGAYRTPANPAGIDLSDAVFAELGLADNDYVTWRFVHRGYVALPFL
Ga0308173_116041471	3300032074	Soil	SGIDLSDATFAALGLRDNSTLEWRFVHRGYIPLPRVAIPTGP
Ga0306924_117438812	3300032076	Soil	RPAAERGIGVYRRPSNRAGIDLSDAVFATLGLHDNDFVEWRFVHRGYVVFPRL
Ga0307471_1009792441	3300032180	Hardwood Forest Soil	GRGAYRTPVNTAGIDLSDAVFAALGLPDNDVVDWRFVHRGYVVLPRL
Ga0373909_0215340_1_108	3300034191	Sediment Slurry	GIDLSDAVFAALGLRDNDVVDWRFVHRGYVALPRL

Hidden Markov Model


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