Metagenome Family F100641

Basic Information
Family ID	F100641
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	69 residues
Representative Sequence	YLYDETTRRLEKELRANPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKK
Number of Associated Samples	96
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.99 %
% of genes near scaffold ends (potentially truncated)	82.35 %
% of genes from short scaffolds (< 2000 bps)	85.29 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Bacteria (97.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (38.235 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (23.529 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.43% β-sheet: 0.00% Coil/Unstructured: 44.57%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01977	UbiD	25.49
PF09084	NMT1	13.73
PF13379	NMT1_2	5.88
PF02800	Gp_dh_C	2.94
PF13193	AMP-binding_C	1.96
PF00766	ETF_alpha	0.98
PF14026	DUF4242	0.98
PF13588	HSDR_N_2	0.98
PF13229	Beta_helix	0.98
PF02775	TPP_enzyme_C	0.98
PF00378	ECH_1	0.98
PF00890	FAD_binding_2	0.98
PF13936	HTH_38	0.98
PF05838	Glyco_hydro_108	0.98
PF00753	Lactamase_B	0.98
PF03241	HpaB	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	25.49
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	13.73
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	13.73
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	2.94
COG2025	Electron transfer flavoprotein, alpha subunit FixB	Energy production and conversion [C]	0.98
COG2368	Aromatic ring hydroxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG3926	Lysozyme family protein	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	86.27 %
Unclassified	root	N/A	2.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.98 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	82.35 %
Unclassified	root	N/A	2.94 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.98 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.98 %
Acidithiobacillia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia	0.98 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	82.35 %
Unclassified	root	N/A	2.94 %
Acidobacteria bacterium JGI 0001001-H03	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium JGI 0001001-H03	0.98 %
Nitrospirae bacterium GWC2_42_7	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium GWC2_42_7	0.98 %
Acidithiobacillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales	0.98 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	81.37 %
Unclassified	root	N/A	2.94 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.98 %
Acidithiobacillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae	0.98 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.98 %
Acidobacteria bacterium JGI 0001001-H03	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium JGI 0001001-H03	0.98 %
Nitrospirae bacterium GWC2_42_7	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium GWC2_42_7	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	81.37 %
Unclassified	root	N/A	2.94 %
Synechococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae	0.98 %
Acidithiobacillus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus	0.98 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.98 %
Acidobacteria bacterium JGI 0001001-H03	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium JGI 0001001-H03	0.98 %
Nitrospirae bacterium GWC2_42_7	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium GWC2_42_7	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	81.37 %
Unclassified	root	N/A	2.94 %
Acidithiobacillus ferrivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	0.98 %
Synechococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus	0.98 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.98 %
Acidobacteria bacterium JGI 0001001-H03	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium JGI 0001001-H03	0.98 %
Nitrospirae bacterium GWC2_42_7	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium GWC2_42_7	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	81.37 %
Unclassified	root	N/A	2.94 %
unclassified Synechococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus	0.98 %
Acidithiobacillus ferrivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	0.98 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.98 %
Acidobacteria bacterium JGI 0001001-H03	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium JGI 0001001-H03	0.98 %
Nitrospirae bacterium GWC2_42_7	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium GWC2_42_7	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	81.37 %
Unclassified	root	N/A	2.94 %
Synechococcus sp. PCC 7502	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. PCC 7502	0.98 %
Acidithiobacillus ferrivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	0.98 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.98 %
Acidobacteria bacterium JGI 0001001-H03	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium JGI 0001001-H03	0.98 %
Nitrospirae bacterium GWC2_42_7	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium GWC2_42_7	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2192772	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M
3300000787\|JGI11643J11755_11169139	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	632	Open in IMG/M
3300000789\|JGI1027J11758_12969506	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300000956\|JGI10216J12902_123502761	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	685	Open in IMG/M
3300002899\|JGIcombinedJ43975_10034672	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	829	Open in IMG/M
3300003998\|Ga0055472_10163900	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium JGI 0001001-H03	667	Open in IMG/M
3300004061\|Ga0055487_10057103	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	644	Open in IMG/M
3300004077\|Ga0055523_10191925	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	529	Open in IMG/M
3300004266\|Ga0055457_10252286	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300004463\|Ga0063356_102515205	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	789	Open in IMG/M
3300004782\|Ga0062382_10700546	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	501	Open in IMG/M
3300005295\|Ga0065707_11051145	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	527	Open in IMG/M
3300005356\|Ga0070674_100624357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	913	Open in IMG/M
3300005458\|Ga0070681_11822617	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	535	Open in IMG/M
3300005559\|Ga0066700_10287301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. PCC 7502	1157	Open in IMG/M
3300005713\|Ga0066905_101086667	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300005713\|Ga0066905_102162543	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	518	Open in IMG/M
3300005873\|Ga0075287_1002177	All Organisms → cellular organisms → Bacteria → Proteobacteria	2416	Open in IMG/M
3300005873\|Ga0075287_1045971	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	592	Open in IMG/M
3300005904\|Ga0075280_10104190	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300006806\|Ga0079220_11483420	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	581	Open in IMG/M
3300006894\|Ga0079215_10884055	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	638	Open in IMG/M
3300006918\|Ga0079216_10960728	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	654	Open in IMG/M
3300006969\|Ga0075419_10477548	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	863	Open in IMG/M
3300009087\|Ga0105107_10470714	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	875	Open in IMG/M
3300009111\|Ga0115026_10255903	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1202	Open in IMG/M
3300009111\|Ga0115026_11840073	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	514	Open in IMG/M
3300009153\|Ga0105094_10699160	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	594	Open in IMG/M
3300009167\|Ga0113563_12081206	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	680	Open in IMG/M
3300009609\|Ga0105347_1153366	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	902	Open in IMG/M
3300010043\|Ga0126380_11228951	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	648	Open in IMG/M
3300010391\|Ga0136847_10501759	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1446	Open in IMG/M
3300010400\|Ga0134122_11169938	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	767	Open in IMG/M
3300010403\|Ga0134123_12014417	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	636	Open in IMG/M
3300011432\|Ga0137428_1090663	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	858	Open in IMG/M
3300012041\|Ga0137430_1190828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589	Open in IMG/M
3300012129\|Ga0137345_1053082	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	525	Open in IMG/M
3300012200\|Ga0137382_10468324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	893	Open in IMG/M
3300012202\|Ga0137363_10018226	All Organisms → cellular organisms → Bacteria	4663	Open in IMG/M
3300012203\|Ga0137399_11637425	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	532	Open in IMG/M
3300012204\|Ga0137374_11138311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	552	Open in IMG/M
3300012205\|Ga0137362_10913001	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	750	Open in IMG/M
3300012350\|Ga0137372_10508037	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	896	Open in IMG/M
3300012353\|Ga0137367_10395868	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium GWC2_42_7	979	Open in IMG/M
3300012354\|Ga0137366_10116186	All Organisms → cellular organisms → Bacteria → Proteobacteria	2023	Open in IMG/M
3300012358\|Ga0137368_10103197	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2206	Open in IMG/M
3300012361\|Ga0137360_10558870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → Acidithiobacillus ferrivorans	978	Open in IMG/M
3300012922\|Ga0137394_10675152	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	871	Open in IMG/M
3300012923\|Ga0137359_10083214	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300012931\|Ga0153915_10691406	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1178	Open in IMG/M
3300012948\|Ga0126375_10209384	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1287	Open in IMG/M
3300012948\|Ga0126375_10955635	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	694	Open in IMG/M
3300012964\|Ga0153916_12652485	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	565	Open in IMG/M
3300014255\|Ga0075320_1006307	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1728	Open in IMG/M
3300014272\|Ga0075327_1147636	Not Available	731	Open in IMG/M
3300014308\|Ga0075354_1080311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	652	Open in IMG/M
3300014317\|Ga0075343_1054734	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	815	Open in IMG/M
3300014873\|Ga0180066_1048711	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	835	Open in IMG/M
3300014885\|Ga0180063_1110314	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	847	Open in IMG/M
3300015259\|Ga0180085_1064216	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1059	Open in IMG/M
3300018066\|Ga0184617_1032519	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1245	Open in IMG/M
3300018072\|Ga0184635_10001961	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	6134	Open in IMG/M
3300018082\|Ga0184639_10655974	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	508	Open in IMG/M
3300018465\|Ga0190269_10730032	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M
3300018469\|Ga0190270_10177295	All Organisms → cellular organisms → Bacteria → Proteobacteria	1770	Open in IMG/M
3300019885\|Ga0193747_1023242	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1529	Open in IMG/M
3300025160\|Ga0209109_10045864	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2331	Open in IMG/M
3300025319\|Ga0209520_10121690	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1662	Open in IMG/M
3300025537\|Ga0210061_1050399	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	706	Open in IMG/M
3300025537\|Ga0210061_1065261	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	627	Open in IMG/M
3300025791\|Ga0210115_1094439	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	608	Open in IMG/M
3300025796\|Ga0210113_1052914	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300025912\|Ga0207707_10437144	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1120	Open in IMG/M
3300025937\|Ga0207669_10526598	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	950	Open in IMG/M
3300025996\|Ga0208777_1004290	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1230	Open in IMG/M
3300026066\|Ga0208290_1012792	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	844	Open in IMG/M
3300026333\|Ga0209158_1206747	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	683	Open in IMG/M
3300027617\|Ga0210002_1070640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	616	Open in IMG/M
3300027682\|Ga0209971_1002899	All Organisms → cellular organisms → Bacteria	4095	Open in IMG/M
3300027695\|Ga0209966_1053362	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	863	Open in IMG/M
3300027722\|Ga0209819_10049078	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1448	Open in IMG/M
3300027886\|Ga0209486_10453683	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	788	Open in IMG/M
3300028828\|Ga0307312_10041931	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2706	Open in IMG/M
3300030620\|Ga0302046_11280080	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	574	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10199231	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	560	Open in IMG/M
(restricted) 3300031237\|Ga0255334_1036755	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	550	Open in IMG/M
3300031720\|Ga0307469_11536268	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	638	Open in IMG/M
3300031720\|Ga0307469_12225381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	534	Open in IMG/M
3300031731\|Ga0307405_10052604	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2533	Open in IMG/M
3300031824\|Ga0307413_10006379	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5378	Open in IMG/M
3300031858\|Ga0310892_10562000	Not Available	768	Open in IMG/M
3300031908\|Ga0310900_11179981	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	636	Open in IMG/M
3300031995\|Ga0307409_100739840	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	986	Open in IMG/M
3300032075\|Ga0310890_10658125	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	816	Open in IMG/M
3300032144\|Ga0315910_10051221	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3007	Open in IMG/M
3300032157\|Ga0315912_10747106	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	779	Open in IMG/M
3300032180\|Ga0307471_100190263	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2038	Open in IMG/M
3300034148\|Ga0364927_0025283	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1439	Open in IMG/M
3300034149\|Ga0364929_0006287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	3140	Open in IMG/M
3300034178\|Ga0364934_0224142	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300034354\|Ga0364943_0223129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.20%
Host-Associated	Host-Associated	9.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.76%
Aquatic	Environmental → Aquatic	28.43%
Plants	Host-Associated → Plants	9.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.84%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Sediment	Environmental → Aquatic → Sediment	9.80%
Marine	Environmental → Aquatic → Marine	8.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.88%
Floodplain	Environmental → Terrestrial → Floodplain	3.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.80%
Wetlands	Environmental → Aquatic → Marine → Wetlands	8.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.92%
Loam	Environmental → Terrestrial → Soil → Loam	3.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.92%
Sand	Environmental → Terrestrial → Soil → Sand	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Lake	Environmental → Aquatic → Freshwater → Lake	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.80%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	8.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.76%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	8.82%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.92%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.94%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.96%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.98%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004061	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2	Environmental	Open in IMG/M
3300004077	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqC_D2	Environmental	Open in IMG/M
3300004266	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqA_D1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004782	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005873	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301	Environmental	Open in IMG/M
3300005904	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_404	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012129	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT530_2	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300014255	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_TuleC_D2	Environmental	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014317	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1	Environmental	Open in IMG/M
3300014873	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200B_16_10D	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015259	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_10D	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025319	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025791	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300025796	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025946	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025996	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_301 (SPAdes)	Environmental	Open in IMG/M
3300026066	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031237 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_35cm_T3_129	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100641

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_21927721	3300000033	Soil	LRASPESITFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
JGI11643J11755_111691391	3300000787	Soil	RRLEKDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKN*
JGI1027J11758_129695062	3300000789	Soil	VSYLYDETIRRLEKDLRANPESIRFHFDTAALDDPRAKQLSDKDFWDPSLVDEIRRSGFVEQLYKN*
JGI10216J12902_1235027612	3300000956	Soil	NESLQVLQRYFQNSDMAAMSYLYDETTRHLEKELRANPESIRFHLEMAALDDARAKQFTEKDFWDSSLVEEIRRSGFIKQLYKN*
JGIcombinedJ43975_100346721	3300002899	Soil	TRRLEKDLRPNSESISFHYEMAALDDPRAAKFSAKEFWDPSLIEEIRRSGFVDQLYKQ*
Ga0055472_101639001	3300003998	Natural And Restored Wetlands	KDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKN*
Ga0055487_100571032	3300004061	Natural And Restored Wetlands	LRASAESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0055523_101919251	3300004077	Natural And Restored Wetlands	DETTRRLEKELRPTPESIAFHYQMAAQDDPRAKQANEKTFWDPSVVEEIRRSGFVEQIYKN*
Ga0055457_102522861	3300004266	Natural And Restored Wetlands	YEETARRLEKELRANPDSIRFHFDLAALDDPRAKQFGDKEFWDPSVIEEIRRSGFIDQLYNN*
Ga0063356_1025152051	3300004463	Arabidopsis Thaliana Rhizosphere	LYDETTRRLEKELRASPESITFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0062382_107005462	3300004782	Wetland Sediment	AMSYLYDETARRLEKDLRASPESIRFHLDMAALDDPRAAKFTEKEFWDSSVVEEIRRSGFVDQLYKN*
Ga0065707_110511451	3300005295	Switchgrass Rhizosphere	YIEGIHYMIGHKPESLKILQRYFQNSDLTAMGYLYDETTRRLEKELRASPESITFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0070674_1006243572	3300005356	Miscanthus Rhizosphere	QKYFQNSDRAAMGYLYDETTRRLEKDLHANQESIRFHLELAALDDPRAAKLGEKDFWDDSVVEEIRRSGFIEQLYKK*
Ga0070681_118226171	3300005458	Corn Rhizosphere	KDLRARPESIRFHLDMAALDDPRAAKFSEKDFWDASVVEEIRRSGFIDQLYKR*
Ga0066700_102873012	3300005559	Soil	YDETTRRLEKDLRPNAESISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIRRSGFVEQLYKQ*
Ga0066905_1010866672	3300005713	Tropical Forest Soil	MSYLYDETTRRLEKDLRPNADSISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIRRSGFVEQLYKQ*
Ga0066905_1021625431	3300005713	Tropical Forest Soil	AKDLRADAESIRFHLEMAALDDPRAKQFTDKDFWDPSLVEEIRRSGFVDQLYKK*
Ga0075287_10021771	3300005873	Rice Paddy Soil	YDETTRRLEKDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFVDQLYKK*
Ga0075287_10459712	3300005873	Rice Paddy Soil	YDETTRRLEKDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDASVVEEIRRSGFIDQLYKN*
Ga0075280_101041902	3300005904	Rice Paddy Soil	AYLYDQTTHRLEKELRANPESIRFHLDMAALDDPRAKQFGEKEFWDSSVVDEIVRSGFVDQLYKK*
Ga0079220_114834201	3300006806	Agricultural Soil	QNSDLGAMGYLYDETTRRLEKDLRANPESIRFHYDMAALDDPRAAKFSDKEFWDPALVDEIRHSGFIDQLYRK*
Ga0079215_108840551	3300006894	Agricultural Soil	TAMGYLYDETTRRLEKDLRPSEESIRFHLELAALDDPRAGKLSEKDFWDGSVVEEIRRSGFIEQLYKK*
Ga0079216_109607281	3300006918	Agricultural Soil	EKDLHASQESIRFHLELAALDDPRAAKLGEKDFWDASVVEEIRRSGFIEQLYKK*
Ga0075419_104775482	3300006969	Populus Rhizosphere	MEGIHYMTQHKDHSLKILQRYFNNSDITAMGYLYDETTRRLEKDLRPSEESIRFHLELAALDDPRAGKLSEKDFWDGSVVEEIRCSGFIEQLYKK*
Ga0105107_104707141	3300009087	Freshwater Sediment	ELRASPESIAFHYEMAALDDPRARQATEKTFWDNSLIEEIRRSGFIDQLYKK*
Ga0115026_102559031	3300009111	Wetland	KELRASPESIAFHYDMAALDDPRAKQANEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0115026_118400732	3300009111	Wetland	DLAAMGYLYDETTRRLEKELRASPESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0105094_106991601	3300009153	Freshwater Sediment	GYIEGIHYMIGHKPESLKILQRYFQNSDLAAMGYLYDETTRRLEKELRASPESIAFHYDMAALDDPRAKQATEKTFWDSSVVEEIRRSGFVDQLYKN*
Ga0113563_120812062	3300009167	Freshwater Wetlands	IGHKPESLKILQRYFQNSDLTAMGYLYDETTRRLEKELRASPESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0105347_11533661	3300009609	Soil	YIEGIHYMIGHKSESLKILQRYFQNSDLAAMGYLYDETTRRLEKELRASPESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0126380_112289512	3300010043	Tropical Forest Soil	MSYLYDETTRRLEKDLRPNADSISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIRRSGFVDQLYKQ*
Ga0136847_105017591	3300010391	Freshwater Sediment	MNYLYDETTRRLEKDPRASPESIAFHYDMAALDDPRAKQATENTFWDSSLVEEIRRSGFIDQLYKN*
Ga0134122_111699382	3300010400	Terrestrial Soil	YFQNTDTTAMGYLYEETTRRLEKDLRANPESIRFHLEMAALDDPRAKQFTEKDFWDPSVVEEIRRSGFIDQLYRK*
Ga0134123_120144172	3300010403	Terrestrial Soil	RRLEKELRASPESITFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIDQLYKN*
Ga0137428_10906632	3300011432	Soil	MDGIAFMLRRKDDSLKVLYKYFQNSDTVAMSYLYDETTRRLEKDLRPNPESISFHYEMAALDDPRAAKFSGKEFWDPGPVEEIRRSGFVEQLYKR*
Ga0137430_11908282	3300012041	Soil	TTRRLEKELRASPESITFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0137345_10530821	3300012129	Soil	HYMIGHKPESLKILQRYFQNSDLAAMGYLYDETTRRLEKELRASPESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0137382_104683242	3300012200	Vadose Zone Soil	RRLEKDLRPNAESISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIRRSGFVEQLYKQ*
Ga0137363_100182264	3300012202	Vadose Zone Soil	MSYLYDDTTRRLEKDLRANPESIRFHFDMAALDDPRAKQLSDKDFWDPSLVDEIRRSGFVEQLYKN*
Ga0137399_116374251	3300012203	Vadose Zone Soil	KELRASPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKP*
Ga0137374_111383111	3300012204	Vadose Zone Soil	MTDRFALTARATRHLEKELRANPESIRFHLEMAALDDARAKQFTEKDFWDSSLVEEIRRSGFIKQLYKN*
Ga0137362_109130012	3300012205	Vadose Zone Soil	MSYLYDETTRRLEKDLRANPESIRFHFDMAALDDPRAKQLSDKDFWDPSLVDEIRRSGFVEQLYKN*
Ga0137372_105080372	3300012350	Vadose Zone Soil	KKDLRANSDSIRFHLDMAALDDPRDKEFWDSSIVDQIRKPGFVDQLR*
Ga0137367_103958681	3300012353	Vadose Zone Soil	TRHLEKELRANPESIRFHLEMAALDDARAKQFTEKDFWDSSLVEEIRRSGFIKQLYKN*
Ga0137366_101161863	3300012354	Vadose Zone Soil	MTDRFALTARATRHLEKELRANPESIRFHLEMAALDDARAKQFTEKDFWDTSLVEEIRRSGFIKQLYKN*
Ga0137368_101031972	3300012358	Vadose Zone Soil	MAAMSYLYDETTRHLEKELRANPESIRFHLEMAALDDARAKQFTEKDFWDSSLVEEIRRSGFIKQLYKN*
Ga0137360_105588701	3300012361	Vadose Zone Soil	MDGIHYMLRRKDASLMVLYKYFQNSDTAAMSYLYDETTRRLEKDLHANAESIRFHLDMAALDDPRAKQLSDKDFWDPSLVDEIRRSGFVEQLYKN*
Ga0137394_106751521	3300012922	Vadose Zone Soil	MSYLYNETIRHLEKDLRPNAESISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIPLRLCGTTL*
Ga0137359_100832143	3300012923	Vadose Zone Soil	MSYLYDETTRRLEKDLRANPESIRLHFDMAALDDPRAKQLSDKDFWDPSLVDEIRRSGFVEQLYKN*
Ga0153915_106914061	3300012931	Freshwater Wetlands	GYMDGIHYMLRHKEDSLQVLHKYFQNSDLLAMGYLYDETTRRVEKELRANPESIRFHFEMSALDDPRAAKLSEKDFWDSSVVDEIHRSGFVEQLYKR*
Ga0126375_102093842	3300012948	Tropical Forest Soil	MQRRKGESLKVLYRYFQKSDTAAMSYLYDETTRRLEKDLRPNADSISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIRRSGFVDQLHKQ*
Ga0126375_109556351	3300012948	Tropical Forest Soil	LKVLYKYFQNSETVAMSYLYDETTRRLEKDLRPNAESISFHYEMAALDDPRAVKFAAQEFWDSSLVEEIRRSGFVDQLYRQ*
Ga0153916_126524851	3300012964	Freshwater Wetlands	DLVAMGYLYDETTRRVEKELRANPESIRFHFEMSALDDPRAAKLSEKDFWDSSVVDEIRRSGFVEQLYKH*
Ga0075320_10063071	3300014255	Natural And Restored Wetlands	VLNRYFQNPDGAALSYLYDETTRRLERGLRAAPESIAFHYEMAALDDPRAAKFTEKEFWDPSLVDEIRRSGF
Ga0075327_11476361	3300014272	Natural And Restored Wetlands	RYFQNPDSTAMSYLYDETTRRLEKELRAHPDSIRFHLDMAALDDPRAKQFTEKEFWDASVIEEIRRSGFIDQLYKR*
Ga0075354_10803112	3300014308	Natural And Restored Wetlands	ELRASPESIAFHYDMAALDDPRAKQANEKTFWDSSLVDEIRRSGFIEQLYRN*
Ga0075343_10547341	3300014317	Natural And Restored Wetlands	YMIHNKSESLKILQRYFQNSDLAAMGYLYDETTRRLEKELRASAESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN*
Ga0180066_10487111	3300014873	Soil	MSYLYDETARRLEKDLRASPESIRFHLDMAALDDPRAAKFTEKDFWDASVVEEIRRSGFVDQLYKK*
Ga0180063_11103141	3300014885	Soil	IGHKPESLKILQRYFQNSDLAAMGYLYDETTRRLEKELRASPESIAFHYDMAAQDDPRAKQATEKTFWDSSLVEEIRRSGFVEQLYKN*
Ga0180085_10642162	3300015259	Soil	FYRYFQNSNEATMSYLYDETARRLEKDLRASPESIRFHLDMAALDDPRAKQLSEKDFWDSSVVEEIRRSGFIEQLYKK*
Ga0184617_10325192	3300018066	Groundwater Sediment	HKAESLQVSQRYFQNTDTTAMGYLYDETTRRLEKDLRANPESIRFHLEMAALDDPRAKQFTEKDFWDPSVVEEIRRSGFIDQLYRK
Ga0184635_100019615	3300018072	Groundwater Sediment	VLYKYFQNSDTAAMSYLYDETTRRLEKDLRPNAESISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIRRSGFVEELYKR
Ga0184639_106559742	3300018082	Groundwater Sediment	ETTRRLERDLRANPESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIDQLYKN
Ga0190269_107300321	3300018465	Soil	TAMGYLYDETTRRLEKELRANPESIAFHYDMAAQDDPRAKQATEKSFWDNTLIEEIRRSGFIDQLYKR
Ga0190270_101772953	3300018469	Soil	YDETARRLEKELRASPDAIAFHYEMAAQDDPRAKQATEKTFWDSSLVEEIRRSGFVDQLYKN
Ga0193747_10232421	3300019885	Soil	MTALDYLYDETTRRLEKELRANPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKK
Ga0209109_100458641	3300025160	Soil	DESLKVFYRYFQNSNEATMSYLYDETARRLEKDLRASPESIRFHLDMAALDDPRAAKFTEKDFWDAGVVEEIRRSGFVDQLYKN
Ga0209520_101216902	3300025319	Soil	EKDLRASPDSIRFHLDMAALDDPRAAKLSEKDFWDSSLVEEIRRSGFVDQLYKN
Ga0210061_10503991	3300025537	Natural And Restored Wetlands	AMGYLYDETTRRLEKDLRAASESIRFHFDMAALDDPRAKQFGDKEFWDPSVVEEIRRSGFIDQLYKK
Ga0210061_10652611	3300025537	Natural And Restored Wetlands	SYLYDETTRRLEKDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFVDQLYKK
Ga0210115_10944391	3300025791	Natural And Restored Wetlands	YLYDETTRRLEKDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKN
Ga0210113_10529141	3300025796	Natural And Restored Wetlands	ILQRYFQNTDKAAINYLYEETTSRLQKDLRAEPESIRFHLELAAMDDPRAAKLTAKDFWNSSVVDEIFRSGFFDRLNRK
Ga0207707_104371442	3300025912	Corn Rhizosphere	QNSDISAMGYLYDETTKRLEKDLRARPESIRFHLDMAALDDPRAAKFSEKDFWDASVVEEIRRSGFIDQLYKR
Ga0207669_105265982	3300025937	Miscanthus Rhizosphere	KILQKYFQNSDRAAMGYLYDETTRRLEKDLHANQESIRFHLELAALDDPRAAKLGEKDFWDDSVVEEIRRSGFIEQLYKK
Ga0210126_1139682	3300025946	Natural And Restored Wetlands	LRASAESIAFHYDMAALDDPRAKQATEKTFWDSSLVEEIRRSGFIEQLYKN
Ga0208777_10042902	3300025996	Rice Paddy Soil	RRLEKDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFVDQLYKK
Ga0208290_10127922	3300026066	Natural And Restored Wetlands	LKILQRYFQNSDAAAMSYLYDETTRRLEKDLRAHPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFVDQLYKK
Ga0209158_12067472	3300026333	Soil	YDETTRRLEKELRANPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKK
Ga0210002_10706401	3300027617	Arabidopsis Thaliana Rhizosphere	SDAAAMSYLYDETTRRLEKDLRAHLESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKN
Ga0209971_10028994	3300027682	Arabidopsis Thaliana Rhizosphere	RYFQNSDAAAMSYLYDETTRRLEKDLRAHLESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKN
Ga0209966_10533621	3300027695	Arabidopsis Thaliana Rhizosphere	AAMSYLYDETTRRLEKDLRAHPESIRFHLEMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKN
Ga0209819_100490782	3300027722	Freshwater Sediment	YLYDETIRRLEKDLRPNGESISFHYEMAALDDPRAAKFSAKEFWDPSLIEEIRRSGFVDQLYRQ
Ga0209486_104536832	3300027886	Agricultural Soil	LTAMSYLYDETTRRLEKDLRASQASIRFHLELAALDDPRAAKLGEKDFWDASVVEEIRRSGFVEQLYKK
Ga0307312_100419313	3300028828	Soil	DMAVLDYLYDETTRRLEKELRANPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKK
Ga0302046_112800803	3300030620	Soil	TRRLEKDLRASQESIRFHLELAALDDPRAAKLSEKDFWDASVVEEIRRSGFINQLYKK
(restricted) Ga0255310_101992312	3300031197	Sandy Soil	TRRLEKDLRANPESIRFHLEMAALDDPRAAKFSDKDFLDASVVEEIRRSGFIDQLYRK
(restricted) Ga0255334_10367551	3300031237	Sandy Soil	VQRYFQNSDAAAMSYLYDETTRRLEKDLRANPESIRFHLEMAALDDPRAAKFSDKDFWDASVVEEIRRSGFIDQLYRK
Ga0307469_115362681	3300031720	Hardwood Forest Soil	LSNSDTAAMSYLYDETTQRLEKDLRPNAESISFHYEMAALDDPRAAKFSAKEFWDPSLVEEIRRSGFVEQLYKQ
Ga0307469_122253812	3300031720	Hardwood Forest Soil	YLYDETTRRLEKELRANPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKK
Ga0307405_100526042	3300031731	Rhizosphere	MGYLYDETTRRLEKELRANPESIAFHYDMAAVDDPRAKQATDKTFWDSSLVEEIRRSGFIEQLYKN
Ga0307413_100063791	3300031824	Rhizosphere	DETTRRLEKDLRAGQESIRFHLELAALDDPRAAKLGERDFWDATLVEEIRRSGFIDQLYN
Ga0310892_105620001	3300031858	Soil	QNSDLAAMGYLYDETTRRLEKELRANPESIAFHYDMAAVDDPRAKQATDKTFWDSSLVEEIRRSGFIEQLYKN
Ga0310900_111799812	3300031908	Soil	GNKTESVRVMQKYFQSADLAAMGYLYDETSRRLEKELYASPESIAFHYEMAAVDDPRAKQASEKTFWDSSLIEEIRRSGFVDQLYKK
Ga0307409_1007398401	3300031995	Rhizosphere	DLAAMGYLYDETTRRLEKELRANPESIAFHYDMAAVDDPRAKQATDKTFWDSSLVEEIRRSGFIEQLYKN
Ga0310890_106581252	3300032075	Soil	IEGIHYMAQHKDPSVKILQKYFQNSDRAAMGYLYDETTRRLEKDLHANQESIRFHLELAALDDPRAAKLGEKDFWDDSVVEEIRRSGFIEQLYKK
Ga0315910_100512214	3300032144	Soil	SYLYDETTRRLEKELRASPESIRFHLDMAALDDPRAAKFSEKDFWDSSVVEEIRRSGFIDQLYKK
Ga0315912_107471061	3300032157	Soil	NSDLAAMSYLYDETTRRLEKELRANPESIAFHYDMAAVDDPRAKQATDKTFWDSSLVEEIRRSGFIEQLYKN
Ga0307471_1001902631	3300032180	Hardwood Forest Soil	TAGMSYLYDETTRRLEKDLRANPESIRFHLDMAALDDPRAKQLSDKDFWDPSLVDEIRRSGFVEQLYKN
Ga0364927_0025283_1265_1438	3300034148	Sediment	RRLEKELRPNSESIAFHYEMAAQDDPRAKQATEKTFWDNSLVEEIRRSGFVEQLYKN
Ga0364929_0006287_2878_3138	3300034149	Sediment	HKPESLKILQRYFQNSDLAAMGYLYDETTRRLEKELRASPESIAFHYDMAAQDDPRAKQATEKTFWDNSLVEEIRRSGFVEQLYKN
Ga0364934_0224142_1_177	3300034178	Sediment	TRRLEKELRASAESIAFHYEMAALDDPRAKQATEKTFWDSSLVEEIRRTGFAEQLYKN
Ga0364943_0223129_464_673	3300034354	Sediment	MTAMSYLYDETTRRLEKELRPNSESIAFHYEMAAQDDPRAKQATEKTFWDNSLVEEIRRSGFVEQLYKN

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign