Metagenome / Metatranscriptome Family F100638

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100638
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	67 residues
Representative Sequence	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSI
Number of Associated Samples	79
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.18 %
% of genes near scaffold ends (potentially truncated)	94.12 %
% of genes from short scaffolds (< 2000 bps)	97.06 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.863 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (32.353 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (39.216 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.42% β-sheet: 28.42% Coil/Unstructured: 43.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08447	PAS_3	21.57
PF08448	PAS_4	2.94
PF00196	GerE	1.96
PF07724	AAA_2	1.96
PF13191	AAA_16	0.98
PF04226	Transgly_assoc	0.98
PF13620	CarboxypepD_reg	0.98
PF13426	PAS_9	0.98
PF01740	STAS	0.98
PF00069	Pkinase	0.98
PF00465	Fe-ADH	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0337	3-dehydroquinate synthetase	Amino acid transport and metabolism [E]	0.98
COG0371	Glycerol dehydrogenase or related enzyme, iron-containing ADH family	Energy production and conversion [C]	0.98
COG1454	Alcohol dehydrogenase, class IV	Energy production and conversion [C]	0.98
COG1979	Alcohol dehydrogenase YqhD, Fe-dependent ADH family	Energy production and conversion [C]	0.98
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	56.86 %
Unclassified	root	N/A	43.14 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.86 %
Unclassified	root	N/A	43.14 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.86 %
Unclassified	root	N/A	43.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.86 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.88 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	4.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.88 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	4.90 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	1.96 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	4.90 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.96 %
Alloacidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium	1.96 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1.96 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	4.90 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1.96 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.96 %
Opitutus	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus	1.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	4.90 %
unclassified Opitutus	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus	1.96 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1.96 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	43.14 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	4.90 %
Opitutus sp. GAS368	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	1.96 %
Alloacidobacterium dinghuense	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1.96 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100612555	Not Available	586	Open in IMG/M
3300000955\|JGI1027J12803_100995287	Not Available	869	Open in IMG/M
3300000955\|JGI1027J12803_101491112	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1522	Open in IMG/M
3300001089\|JGI12683J13190_1016484	Not Available	651	Open in IMG/M
3300002245\|JGIcombinedJ26739_101533926	Not Available	562	Open in IMG/M
3300003370\|JGI26337J50220_1027782	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	647	Open in IMG/M
3300004082\|Ga0062384_101411046	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300004091\|Ga0062387_100098392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1567	Open in IMG/M
3300004091\|Ga0062387_100658600	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300004092\|Ga0062389_102084029	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300004635\|Ga0062388_102175811	Not Available	577	Open in IMG/M
3300005445\|Ga0070708_101506912	Not Available	627	Open in IMG/M
3300005467\|Ga0070706_100650594	Not Available	978	Open in IMG/M
3300005538\|Ga0070731_11200508	Not Available	501	Open in IMG/M
3300005586\|Ga0066691_10088905	All Organisms → cellular organisms → Bacteria → Acidobacteria	1720	Open in IMG/M
3300005602\|Ga0070762_10814660	Not Available	632	Open in IMG/M
3300005950\|Ga0066787_10043270	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300005994\|Ga0066789_10506051	Not Available	504	Open in IMG/M
3300005995\|Ga0066790_10472432	Not Available	536	Open in IMG/M
3300006806\|Ga0079220_11715377	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300006854\|Ga0075425_101045594	Not Available	931	Open in IMG/M
3300006903\|Ga0075426_11323875	Not Available	547	Open in IMG/M
3300007255\|Ga0099791_10593100	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009038\|Ga0099829_10303058	All Organisms → cellular organisms → Bacteria → Acidobacteria	1310	Open in IMG/M
3300009088\|Ga0099830_10191008	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1598	Open in IMG/M
3300009089\|Ga0099828_10273884	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1516	Open in IMG/M
3300009089\|Ga0099828_11756702	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300009162\|Ga0075423_12182745	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300011269\|Ga0137392_10227837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1530	Open in IMG/M
3300011271\|Ga0137393_10488878	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300011271\|Ga0137393_11701433	Not Available	520	Open in IMG/M
3300012096\|Ga0137389_11311177	Not Available	618	Open in IMG/M
3300012096\|Ga0137389_11725131	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300012189\|Ga0137388_10811183	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	867	Open in IMG/M
3300012199\|Ga0137383_10622917	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300012202\|Ga0137363_11079943	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012205\|Ga0137362_11180853	Not Available	649	Open in IMG/M
3300012206\|Ga0137380_10269009	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1532	Open in IMG/M
3300012206\|Ga0137380_11084870	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012207\|Ga0137381_10671214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Opitutus → unclassified Opitutus → Opitutus sp. GAS368	902	Open in IMG/M
3300012362\|Ga0137361_10418727	Not Available	1230	Open in IMG/M
3300012362\|Ga0137361_11549982	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300012683\|Ga0137398_10989273	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300012683\|Ga0137398_11260979	Not Available	502	Open in IMG/M
3300012917\|Ga0137395_10788334	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300012923\|Ga0137359_11192565	Not Available	649	Open in IMG/M
3300012927\|Ga0137416_11614986	Not Available	590	Open in IMG/M
3300012929\|Ga0137404_10594642	Not Available	994	Open in IMG/M
3300012960\|Ga0164301_10323163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1049	Open in IMG/M
3300015053\|Ga0137405_1221123	Not Available	700	Open in IMG/M
3300015241\|Ga0137418_10480842	Not Available	997	Open in IMG/M
3300015245\|Ga0137409_10042207	All Organisms → cellular organisms → Bacteria → Proteobacteria	4372	Open in IMG/M
3300019789\|Ga0137408_1102803	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300020021\|Ga0193726_1111060	Not Available	1232	Open in IMG/M
3300020199\|Ga0179592_10077959	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1519	Open in IMG/M
3300020580\|Ga0210403_10293841	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1331	Open in IMG/M
3300020580\|Ga0210403_10935757	Not Available	681	Open in IMG/M
3300020580\|Ga0210403_11019602	Not Available	647	Open in IMG/M
3300021168\|Ga0210406_10029378	All Organisms → cellular organisms → Bacteria	4989	Open in IMG/M
3300021403\|Ga0210397_11266347	Not Available	573	Open in IMG/M
3300021405\|Ga0210387_11217512	Not Available	653	Open in IMG/M
3300021475\|Ga0210392_10129300	Not Available	1701	Open in IMG/M
3300021477\|Ga0210398_10249570	All Organisms → cellular organisms → Bacteria	1446	Open in IMG/M
3300021478\|Ga0210402_10049250	All Organisms → cellular organisms → Bacteria	3680	Open in IMG/M
3300021479\|Ga0210410_11418985	Not Available	587	Open in IMG/M
3300021559\|Ga0210409_11005908	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300025910\|Ga0207684_10968772	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300025928\|Ga0207700_10510168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1065	Open in IMG/M
3300026214\|Ga0209838_1055731	Not Available	587	Open in IMG/M
3300026304\|Ga0209240_1104632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1005	Open in IMG/M
3300026320\|Ga0209131_1116986	Not Available	1386	Open in IMG/M
3300026320\|Ga0209131_1189705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	975	Open in IMG/M
3300026361\|Ga0257176_1004369	All Organisms → cellular organisms → Bacteria → Acidobacteria	1581	Open in IMG/M
3300027562\|Ga0209735_1063368	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300027729\|Ga0209248_10176786	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300027829\|Ga0209773_10261504	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300027875\|Ga0209283_10764675	Not Available	598	Open in IMG/M
3300027875\|Ga0209283_10862634	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300027882\|Ga0209590_10956381	Not Available	536	Open in IMG/M
3300027908\|Ga0209006_11126346	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300030847\|Ga0075405_12147255	Not Available	562	Open in IMG/M
3300030946\|Ga0075379_11376233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300031057\|Ga0170834_107964836	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300031057\|Ga0170834_112670702	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300031231\|Ga0170824_115774319	Not Available	656	Open in IMG/M
3300031231\|Ga0170824_116009349	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	576	Open in IMG/M
3300031231\|Ga0170824_122713663	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1670	Open in IMG/M
3300031474\|Ga0170818_112504737	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031474\|Ga0170818_114234486	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300031708\|Ga0310686_111732042	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300031720\|Ga0307469_10961726	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300031720\|Ga0307469_11137706	Not Available	735	Open in IMG/M
3300031720\|Ga0307469_12422550	Not Available	512	Open in IMG/M
3300031820\|Ga0307473_10266606	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Alloacidobacterium → Alloacidobacterium dinghuense	1059	Open in IMG/M
3300031823\|Ga0307478_11468367	Not Available	565	Open in IMG/M
3300031962\|Ga0307479_10272841	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	1671	Open in IMG/M
3300031962\|Ga0307479_10640970	All Organisms → cellular organisms → Bacteria	1043	Open in IMG/M
3300031962\|Ga0307479_10733254	Not Available	966	Open in IMG/M
3300031962\|Ga0307479_11359026	Not Available	670	Open in IMG/M
3300032180\|Ga0307471_101652841	Not Available	795	Open in IMG/M
3300032180\|Ga0307471_102454121	Not Available	659	Open in IMG/M
3300032205\|Ga0307472_102771851	Not Available	501	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.22%
Aquatic	Environmental → Aquatic	7.84%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.22%
Freshwater	Environmental → Aquatic → Freshwater	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.47%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	32.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.76%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026214	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300030847	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030946	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1006125551	3300000955	Soil	MLRITRKVNGEVVFKVSGQLTEENVTEMEALIAAEAKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGLYI
JGI1027J12803_1009952872	3300000955	Soil	MLRITRKANGEVVFKVSGQLNALNVAEIEALIEAEKKGSRIVLDLTDLRSVDGEAVKFLEKWEADS
JGI1027J12803_1014911122	3300000955	Soil	MLRITRKANGEVVFKVSGKLNAENVAEMEELIAAETKGRRIVLDCTDLRSVDGESIKFLEKWEADSIKLKNC
JGI12683J13190_10164842	3300001089	Forest Soil	MLRITRKANGEVVFKVSGQLNAENVAEMEALIAAERNGRRIVLDCADLRSVDGEAVKFLEKWEADSIKLKNCGLYIR
JGIcombinedJ26739_1015339261	3300002245	Forest Soil	MLRITRTANGEVLFKVSGQLTAENVTEMETLIAAETKGRRIVLDCADLRSVDAEAVK
JGI26337J50220_10277821	3300003370	Bog Forest Soil	MLRITRKVNGEVVLKVSGQLISENVAEMDALITAERKGKPIVLDCKDLGSVDGEAVKFLEEXEANSIKLKNC
Ga0062384_1014110461	3300004082	Bog Forest Soil	MLRITRESNGEAVFKVSGQLTAENVTEMERLIAAETKGTRIVLDCADLRSVDAEAVKFLEKWEAASIK
Ga0062387_1000983921	3300004091	Bog Forest Soil	MLRITRKANGEVVFKVSGQLTAENVTEIETLMAAESKGKRIVLDCTDLRLVDGEAVKFLERWEADSIKLKN
Ga0062387_1006586001	3300004091	Bog Forest Soil	MVVVSARNPMLRITRKANGDVVFKISGQLNAQNVAEIGTLIEAEKKGSRIVLECTDLRSVDGEAVKFLEKWEADSIKLKN
Ga0062389_1020840291	3300004092	Bog Forest Soil	MVVVSARNPMLRITRKANGDVVFKISGQLNAQNVAEIGTLIEAEKKGSRIVLECTDLRSVDGEAVKFLEKWEADSI
Ga0062388_1021758111	3300004635	Bog Forest Soil	MLRITRNANGEVVFKVSGQLDAENVAEIGTLIGAEKKGSRIVLDLTDLRSVDGEAVKFLERWEADSIKLKN
Ga0070708_1015069121	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MLRITRQANGGVVFKVSGQLTEENVTEIGTLIAAETKGIRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGLYI
Ga0070706_1006505942	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MLRITRKANGEVVLKVSGQLNVENVAELESLIAAERKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGLYIR
Ga0070731_112005081	3300005538	Surface Soil	LRSELVSMGSLMLRITTKKANSEAVFWISGQLNVQNVAELTRLIEEEKKGARIVLDLTDLRSVD
Ga0066691_100889051	3300005586	Soil	MLRITRRANGEVVFKVSGQLNAENVAEMEALIEAETKGRQIVLDCKDLRSVDGEAVK
Ga0070762_108146602	3300005602	Soil	MLRITRSANGEVLFKVSGELDAENVAEIEAVIRAEKKGTRIVLDLADLRSVDAEAVKSLEMWEADS
Ga0066787_100432701	3300005950	Soil	MPTGNEMLRITRKVNGDVVFKVSGQLTAENVAEMEALIAAEKKGRRIVLDCEDLRSVDGEAIKFLEKWE
Ga0066789_105060511	3300005994	Soil	MLRITRKANGEVVFKISGQLSAENVAQMEALIAAEEKGKRIVLECTDLRSVDGEAVKFLE
Ga0066790_104724322	3300005995	Soil	MPTGNEMLRITRKVNGDVVFKVSGQLTAENVAEMEALITAEKKGQRIVLDCADLRSVDGEAIKCLEKWEADSIKLKNCGL
Ga0079220_117153771	3300006806	Agricultural Soil	MLRITRSANGEVVFRISGQLTADSVTEMETLIAAETTGRGIVLDCTDLRSVDGEAVRFL
Ga0075425_1010455942	3300006854	Populus Rhizosphere	MLRITRKANGEVVFKVSGHLAAENVAEMETLIAAEAKDRRIVLDCTDLRAVDGEAVKFLEKWEADSIKLKNC
Ga0075426_113238751	3300006903	Populus Rhizosphere	MLRITRKANGEVVFKVSGQLTGENVAEIGTLIGAEKKGSRIVLDLTDLRSVDGEAVKFLEKWEADSIKLKNC
Ga0099791_105931001	3300007255	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEVRALIAAETKGRRIVLDCADLRSVDGEAVKFLEKWETDSIKLKNCG
Ga0099829_103030581	3300009038	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLTAENVVEMETLLAAETKGRRIVLDCADLRSVDGEAVKFLEKWEADSIK
Ga0099830_101910082	3300009088	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSI
Ga0099828_102738841	3300009089	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADS
Ga0099828_117567021	3300009089	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLITAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADS
Ga0075423_121827452	3300009162	Populus Rhizosphere	MLRITRKANGEVVFKVSGQLTGENVAEMETLIAAEAKGRRIVLDCADLRSVDGEAVK
Ga0137392_102278372	3300011269	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAERKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLK
Ga0137393_104888782	3300011271	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVTEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKW
Ga0137393_117014331	3300011271	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEVRALIAAESKGSRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGL
Ga0137389_113111771	3300012096	Vadose Zone Soil	MLRITRKAGGEVVFNVSGQLTAENVAEMEALIAAETKGRRIVLDCADLRSVDGEAVKF
Ga0137389_117251312	3300012096	Vadose Zone Soil	MLRITRKVNGEVVFKVSGQLNAENVAEMETLIAAETKGRQIVLDCTDLRSVDGEAVKFLEKWEADSI
Ga0137388_108111832	3300012189	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLITAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKL
Ga0137383_106229172	3300012199	Vadose Zone Soil	MQVVIATRNQMLRITRKANGAVVFTVSGQLTADNVAEVRALIAAEKKGSRIVLDLTDLRSVDGEAVKFLE
Ga0137363_110799432	3300012202	Vadose Zone Soil	MLRITRKINGQVFFKVSGQLTAENVSEMEALIAAEGKGKRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGLYIR
Ga0137362_111808531	3300012205	Vadose Zone Soil	MLRITRKAKREVVFKVSGQLTAENLTEMETLIAAETKGRRIVLDCADLRSVDGEAVKFLE
Ga0137380_102690091	3300012206	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTMIGAEKKGSRIVLDLTDLRSVDGEAVKFLEKWEADSIKLKNCG
Ga0137380_110848701	3300012206	Vadose Zone Soil	MQVVIATRNQMLRITRKANGAVVFKVSGQLTAENVAEVRALIAAEKKGSRIVLDLTDLRSVDGEAVKFLEKWEADSIKLKNCG
Ga0137381_106712142	3300012207	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLRAENVAEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEAD
Ga0137361_104187272	3300012362	Vadose Zone Soil	MLRITRKANGEVVFKISGQLTAENVAEMETLIAAETKGRRIVFDCTDLRSVDGEAVKFLEKWEADSIKLKNCGL
Ga0137361_115499821	3300012362	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLTAVNVAEMETLIAAETKGRRIVLDCADLRSVDGEAVKFLEKCEADSIKLKNCGLYI
Ga0137398_109892731	3300012683	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIEAEKKGRRIVLDLTDLRSVDGEAVKFLAKW
Ga0137398_112609792	3300012683	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIEAEKNGRRIVLDLTDLRSVDGEAVKFLEKWETDSI
Ga0137395_107883342	3300012917	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLTAENVAEMETLIAGETKARRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCSLY
Ga0137359_111925652	3300012923	Vadose Zone Soil	MLRITRKANGEVVLKVSGQLNAENVAEVSALIAAERKGSRIVLDCADLRSVDGEAVKFLEKWEADSI
Ga0137416_116149861	3300012927	Vadose Zone Soil	MLRITRKANGEVVLKVSGQLNAENVAEMEALIAAEGKGRQIVLDCADLRSVDAEAVKFLENCEADSIKLKN
Ga0137404_105946421	3300012929	Vadose Zone Soil	VIATREQMLRITRKANGEVVFKVSGQLTAENVSEMATLIAAETKGKRIVLDCADLRSVDGEAVKFLEKWEADSIKLKNCG
Ga0164301_103231631	3300012960	Soil	MLRITRKENGEVVFKVSGQLAAENVAEIGTLIEAEKKESRIVLDLTDLRSVDGEAVKFLEKWEADLIKL
Ga0137405_12211232	3300015053	Vadose Zone Soil	MATRSQMLRITRKANGEVVFKVSGQLNAENVVEMETLFAAETKGKRIVLDCTDLRSVDGEAVKYLERW
Ga0137418_104808421	3300015241	Vadose Zone Soil	VIATRNEMLRITRKANGEVVLKVSGQLNAENVAEMEALIAAEGKGRQIVLDCADLRSVDAEAVKFLENC*
Ga0137409_100422071	3300015245	Vadose Zone Soil	MLRITRKVNGEVVFKVSGQLTGENVAEMETLIAAETKGRRIVLDCADLRSVDGEAVKFLEKWEADSIKLKNC
Ga0137408_11028031	3300019789	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLTAVNVAEMETLIAAETKGRRIVLDCADLRSVDGEAVKFLEKCEADSIKLKNCGLC
Ga0193726_11110601	3300020021	Soil	MLRITRTANGEVVFKVSGQLTAENVTEMEKLIAAETKGRRIVLECADLRSVDGEAVKF
Ga0179592_100779591	3300020199	Vadose Zone Soil	MLRITRKAKREVVFKVSGQLTAENLAVMETLIAAETKDRRIVLDCTDLRSVDGEAVISL
Ga0210403_102938412	3300020580	Soil	MLRITRKANGEVVFKVSGELRAENVAEMETLIAAETKGRRIVLDCTDLRSVDGEA
Ga0210403_109357571	3300020580	Soil	MLRITRKANGEVAFKVSGQLSAENVAEMETLIAAEGKGRQIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNC
Ga0210403_110196022	3300020580	Soil	MLRITRTANGEVLFKVSGQLTAENVAEMETLIAAETKGRRIVLDCADLRSVDAKAVTFLEKWEADS
Ga0210406_100293783	3300021168	Soil	MLRITRKANGGVVFKVSGQLTEENVEEMQALIAAEGKSRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKN
Ga0210397_112663471	3300021403	Soil	MLRITRKVNGEVVFKVSGQLTEENVAEVEAVIAAERKGKRIVLDCADLRSVDGEAVKFLEKWEADS
Ga0210387_112175122	3300021405	Soil	MLRITRKANREVVFKVSGQLSAENVAEMEALLAAERKDRRIVLDCTDLRSVDGEAVKFLE
Ga0210392_101293002	3300021475	Soil	MLRITRNANGDVIFRVSGELNAENLPEIDAVISAEKKGTHIVLDLTDLRSVDGEAVTSL
Ga0210398_102495701	3300021477	Soil	MLRITRKGNGVVVFKVSGQLTAENVAEMEALISAEKKGQRIVMDCTDLRSVDAHAVKS
Ga0210402_100492502	3300021478	Soil	MLRITRKANGGVVFKVSGQLTAENVEEMQTLIVAEGKSRRIVLDCTDLRSVDGEAVKFLE
Ga0210410_114189851	3300021479	Soil	MLRITRKENGAVVFKVSGELTAENVVEMEALIAAERKGRRIVLDCTDLRSVDGEAVKFLEKWEAD
Ga0210409_110059081	3300021559	Soil	LPSTLHGCDVDEEPMLRITRTANGEVVFKVSGQLNSQNVAEIGKLIEAEKKGSRIVLDCTDLRSVDGEAVKFLEKW
Ga0207684_109687722	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAMRNQMLRITRKANGEVVFKVSGQLTAENVTEMETLIAAETKGRRIVLDCADLRSVDGEAVKFLEKWEADSIKLKNCGL
Ga0207700_105101682	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRGIVLDCTDLRSVDGEAVKFLEKWEADS
Ga0209838_10557312	3300026214	Soil	MPTGNEMLRITRKVNGDVVFKVSGQLTAENVAEMEALIAAEKKGRRIVLDCEDLRSVDGEAIKFLEKWEAD
Ga0209240_11046322	3300026304	Grasslands Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIGAEKKGSRIVLDLTDLRSVDGEAVKFLEKW
Ga0209131_11169861	3300026320	Grasslands Soil	MLRITRKANGEVVFKVSGQLNVENVAEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFL
Ga0209131_11897053	3300026320	Grasslands Soil	MLRITRKVNGEVVFKISGQLTAENISEVESLIAAETKGRRIVLDCTDLRSVDGEAVK
Ga0257176_10043691	3300026361	Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVLDCADLRSVDGEAVKFLEKSE
Ga0209735_10633682	3300027562	Forest Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGLYI
Ga0209248_101767861	3300027729	Bog Forest Soil	MLRITRKVNGEVVLKVSGQLISENVAEMDALITAERKGKPIVLDCKDLGSVDGEAVKFLEEYEANS
Ga0209773_102615041	3300027829	Bog Forest Soil	MLRITRKANGEVVFKVSGELTGENVAEIGTLIEAEKRGSRIVLDLTDLRSVDGEAVKFLEKREA
Ga0209283_107646751	3300027875	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIGAEKKGSRIVLDLTDLRSVDGEAVKFLERWEAD
Ga0209283_108626342	3300027875	Vadose Zone Soil	MLRITRKANGEVVFKVSGQLNAENVAEMETLITAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGL
Ga0209590_109563811	3300027882	Vadose Zone Soil	MLRITRKANGAVVFKVSGQLTAENVAEIGTLIEAEKKGSRIVLDLTDLRSVDGEAVKFL
Ga0209006_111263462	3300027908	Forest Soil	MLRITREGNGEVVLKVSGQVTAENVAEIQAAIAAERNGGRIVLDCADLRSVDAEAVKL
Ga0075405_121472551	3300030847	Soil	MLRITKKTNGQVVVKVSGQLTTKNVSEMEALIAAEGKGKQIVLDGTDLRSVDGEAVTFLEKWEADSIKLKN
Ga0075379_113762331	3300030946	Soil	MLRITRKANGEVLFKVSGQLTAENVTEMETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIK
Ga0170834_1079648362	3300031057	Forest Soil	MLRITRKTNGQVVVKVSGQLTTKNVSEMEALIVAEGKGKQIVLDGTDLRSVDGEAVTFLEKWEADSIELKNCGLYIR
Ga0170834_1126707023	3300031057	Forest Soil	MQVVIATVNQMLRITRKANREVVFKVSGQLTAENVAVMETLIAAETKSRRIVLDCTDLRSVDGEAVKF
Ga0170824_1157743191	3300031231	Forest Soil	MLRITRKTNGQVVVKVSGQLTTKNVSEMEALIVAEGKGKQIVLDGTDLRSVDGEAVTFWEKWEADSIEIKNCGLYIR
Ga0170824_1160093491	3300031231	Forest Soil	MLRITRKANGEVVFRISGQLTAENVAEMEALLAAEGKGKRIVLECTDLRSVDGEAVKYLEKWETDSIK
Ga0170824_1227136632	3300031231	Forest Soil	MLRITRKANREVVFKVSGQLAAENVAVMETLIAAETKSRRIVLDCTDLRSVDGEAVKFLEKW
Ga0170818_1125047371	3300031474	Forest Soil	MLRITRKANGEVVFKVSGQLAAENVAEMETLLAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGLY
Ga0170818_1142344861	3300031474	Forest Soil	MLRITRKTNGQVVVKVSGQLTTKNVSEMEALIAAEGKGKQIVLDGTDLRSVDGEAVTFLEKWEADSIELKNCGLYIR
Ga0310686_1117320421	3300031708	Soil	MLRITRNANGEVVFKVSGQLIWENVAEMEALIGAERNGKRIVLDCTDLRSVDGEAV
Ga0307469_109617262	3300031720	Hardwood Forest Soil	MLRITRKANGEVVFKVSGQLNAENVAEIGTLIEAEKKGSRIVLDLTDLRSVDGEAVKFLEKWEADSIKLKNCGLYIR
Ga0307469_111377061	3300031720	Hardwood Forest Soil	MLRITRKANGEVVFKVSGQLAAENVAEMDALIAAERKGRRSVLDCTDLRSVDGEAV
Ga0307469_124225502	3300031720	Hardwood Forest Soil	MLRITRKANGVVVFKVSGQLTVENVTEIETLIAAETKGKRIVLDCTDLRSVDGEAV
Ga0307473_102666062	3300031820	Hardwood Forest Soil	MLRITRKANGGVVFKVSGQLTAENVTELETLIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGL
Ga0307478_114683672	3300031823	Hardwood Forest Soil	MLRITRKANGEVVFKVSGQLTEENVTEMETLIAAETSGRRIVLDCADLRSVDAEAVKFLEKWEADSI
Ga0307479_102728411	3300031962	Hardwood Forest Soil	MLRITRNANGEVVLKVSGQLNAENVAEVRALIAAESKGSRIVLDCADLRSVDAEAVKFL
Ga0307479_106409703	3300031962	Hardwood Forest Soil	MLRITRKANREVVFKVSGQLTAENVAEMEALIAAERKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKN
Ga0307479_107332541	3300031962	Hardwood Forest Soil	MLRITRKANGEVVLKVSGQLNEENVAEVRALIAAESKGRRIVLDCADLRSVDAEAVKFLEKWEADSIKLK
Ga0307479_113590261	3300031962	Hardwood Forest Soil	MLRITREVNGEAIFKVSGQLSAENVAEVEALIAAETKGRRIVLDCTDLRSVDGEAVKFL
Ga0307471_1016528412	3300032180	Hardwood Forest Soil	MLRITRKVNGEVVFKVSGQLTAENVAEMETLIAAETKGSRIVLDCTDLRSVDGEAVKFLEKWEADS
Ga0307471_1024541211	3300032180	Hardwood Forest Soil	MLRITRQANGGVVFKVSGQLTEDNVTEIGTLIAAETKGIRIVLDCTDLTSVDGEAVKFLEKWEADSIRLKN
Ga0307472_1027718511	3300032205	Hardwood Forest Soil	MLRITRKVNGEVVFKVSGQLTGENVTEMVALIAAETKGRRIVLDCTDLRSVDGEAVKFLEKWEADSIKLKNCGLYI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100638

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences