Metagenome Family F100626

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F100626
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	99 residues
Representative Sequence	VNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPSDDL
Number of Associated Samples	81
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	52.58 %
% of genes near scaffold ends (potentially truncated)	27.45 %
% of genes from short scaffolds (< 2000 bps)	70.59 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (95.098 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (14.706 % of family members)
Environment Ontology (ENVO)	Unclassified (31.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.255 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 46.77% β-sheet: 1.61% Coil/Unstructured: 51.61%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF10604	Polyketide_cyc2	5.88
PF00106	adh_short	4.90
PF13561	adh_short_C2	4.90
PF02771	Acyl-CoA_dh_N	4.90
PF12437	GSIII_N	4.90
PF04255	DUF433	1.96
PF01636	APH	1.96
PF13948	DUF4215	1.96
PF01272	GreA_GreB	1.96
PF13385	Laminin_G_3	0.98
PF00561	Abhydrolase_1	0.98
PF00211	Guanylate_cyc	0.98
PF00378	ECH_1	0.98
PF16360	GTP-bdg_M	0.98
PF07973	tRNA_SAD	0.98
PF00296	Bac_luciferase	0.98
PF07589	PEP-CTERM	0.98
PF14269	Arylsulfotran_2	0.98
PF13417	GST_N_3	0.98
PF08240	ADH_N	0.98
PF01039	Carboxyl_trans	0.98
PF08818	DUF1801	0.98
PF04226	Transgly_assoc	0.98
PF00041	fn3	0.98
PF16363	GDP_Man_Dehyd	0.98
PF00440	TetR_N	0.98
PF00903	Glyoxalase	0.98
PF01641	SelR	0.98
PF07859	Abhydrolase_3	0.98
PF04075	F420H2_quin_red	0.98
PF08281	Sigma70_r4_2	0.98
PF13847	Methyltransf_31	0.98
PF04248	NTP_transf_9	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	4.90
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	1.96
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.96
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.98
COG0777	Acetyl-CoA carboxylase beta subunit	Lipid transport and metabolism [I]	0.98
COG0825	Acetyl-CoA carboxylase alpha subunit	Lipid transport and metabolism [I]	0.98
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.98
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.98
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.98
COG2343	Uncharacterized conserved protein, DUF427 family	Function unknown [S]	0.98
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.98
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.98
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.10 %
Unclassified	root	N/A	4.90 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.10 %
Unclassified	root	N/A	4.90 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.10 %
Unclassified	root	N/A	4.90 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	64.71 %
Unclassified	root	N/A	4.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.98 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	56.86 %
Unclassified	root	N/A	4.90 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	56.86 %
Unclassified	root	N/A	4.90 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	9.80 %
Unclassified	root	N/A	4.90 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.80 %
Unclassified	root	N/A	4.90 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Candidatus Magnetoovum	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetoovum	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.80 %
Unclassified	root	N/A	4.90 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Candidatus Magnetoovum chiemensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetoovum → Candidatus Magnetoovum chiemensis	0.98 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.80 %
Unclassified	root	N/A	4.90 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Candidatus Magnetoovum chiemensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetoovum → Candidatus Magnetoovum chiemensis	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10312048	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1562	Open in IMG/M
3300000559\|F14TC_102645723	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1111	Open in IMG/M
3300004067\|Ga0055485_10015123	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1410	Open in IMG/M
3300004114\|Ga0062593_101108061	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	822	Open in IMG/M
3300004156\|Ga0062589_100230520	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1369	Open in IMG/M
3300004157\|Ga0062590_100966470	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	806	Open in IMG/M
3300004643\|Ga0062591_101413592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	691	Open in IMG/M
3300005294\|Ga0065705_10182891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1563	Open in IMG/M
3300005345\|Ga0070692_10802937	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	643	Open in IMG/M
3300005345\|Ga0070692_11070850	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	568	Open in IMG/M
3300005353\|Ga0070669_100514625	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	994	Open in IMG/M
3300005353\|Ga0070669_101043344	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	703	Open in IMG/M
3300005445\|Ga0070708_102020292	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	534	Open in IMG/M
3300005457\|Ga0070662_101015679	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	710	Open in IMG/M
3300005471\|Ga0070698_100132064	All Organisms → cellular organisms → Bacteria	2452	Open in IMG/M
3300005549\|Ga0070704_101900486	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	552	Open in IMG/M
3300005617\|Ga0068859_100251740	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1857	Open in IMG/M
3300005833\|Ga0074472_10439683	All Organisms → cellular organisms → Bacteria	3057	Open in IMG/M
3300006844\|Ga0075428_100223781	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2032	Open in IMG/M
3300006844\|Ga0075428_101168539	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	812	Open in IMG/M
3300006844\|Ga0075428_101404837	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	733	Open in IMG/M
3300006844\|Ga0075428_101531494	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	698	Open in IMG/M
3300006844\|Ga0075428_102498594	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	529	Open in IMG/M
3300006845\|Ga0075421_102791426	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	503	Open in IMG/M
3300009094\|Ga0111539_10018773	All Organisms → cellular organisms → Bacteria	8557	Open in IMG/M
3300009094\|Ga0111539_13329887	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	517	Open in IMG/M
3300009147\|Ga0114129_10305791	All Organisms → cellular organisms → Bacteria	2118	Open in IMG/M
3300009147\|Ga0114129_10582661	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1451	Open in IMG/M
3300009147\|Ga0114129_12404377	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	631	Open in IMG/M
3300009156\|Ga0111538_10131103	All Organisms → cellular organisms → Bacteria → Proteobacteria	3184	Open in IMG/M
3300009156\|Ga0111538_12032312	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	722	Open in IMG/M
3300009157\|Ga0105092_10030855	All Organisms → cellular organisms → Bacteria	2842	Open in IMG/M
3300009162\|Ga0075423_10814694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	988	Open in IMG/M
3300009553\|Ga0105249_12755815	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	563	Open in IMG/M
3300009610\|Ga0105340_1135914	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1007	Open in IMG/M
3300009873\|Ga0131077_10005377	All Organisms → cellular organisms → Bacteria	28740	Open in IMG/M
3300010375\|Ga0105239_12939917	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	556	Open in IMG/M
3300011398\|Ga0137348_1020172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1042	Open in IMG/M
3300011407\|Ga0137450_1017535	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1161	Open in IMG/M
3300011428\|Ga0137456_1216652	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300012228\|Ga0137459_1046383	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300014269\|Ga0075302_1132528	All Organisms → cellular organisms → Bacteria → Proteobacteria	590	Open in IMG/M
3300014271\|Ga0075326_1008435	All Organisms → cellular organisms → Bacteria	2396	Open in IMG/M
3300014297\|Ga0075306_1088875	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	577	Open in IMG/M
3300014310\|Ga0075331_1019965	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300014861\|Ga0180061_1020340	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	981	Open in IMG/M
3300014881\|Ga0180094_1006846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2045	Open in IMG/M
3300014885\|Ga0180063_1079332	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	980	Open in IMG/M
3300015077\|Ga0173483_10960436	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	509	Open in IMG/M
3300015371\|Ga0132258_10854256	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300015371\|Ga0132258_11063894	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2045	Open in IMG/M
3300015372\|Ga0132256_102218486	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	653	Open in IMG/M
3300018059\|Ga0184615_10008955	All Organisms → cellular organisms → Bacteria	5431	Open in IMG/M
3300018059\|Ga0184615_10017391	All Organisms → cellular organisms → Bacteria	3946	Open in IMG/M
3300018059\|Ga0184615_10347806	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300018063\|Ga0184637_10000320	All Organisms → cellular organisms → Bacteria → Proteobacteria	35604	Open in IMG/M
3300018079\|Ga0184627_10122526	All Organisms → cellular organisms → Bacteria	1376	Open in IMG/M
3300019458\|Ga0187892_10001262	All Organisms → cellular organisms → Bacteria	58992	Open in IMG/M
3300019458\|Ga0187892_10109413	All Organisms → cellular organisms → Bacteria → Proteobacteria	1630	Open in IMG/M
3300021051\|Ga0206224_1012234	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	961	Open in IMG/M
3300021081\|Ga0210379_10052283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1630	Open in IMG/M
3300021090\|Ga0210377_10013304	All Organisms → cellular organisms → Bacteria → Proteobacteria	6255	Open in IMG/M
3300021090\|Ga0210377_10013656	All Organisms → cellular organisms → Bacteria	6167	Open in IMG/M
3300022209\|Ga0224497_10038482	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300022218\|Ga0224502_10082123	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Candidatus Magnetoovum → Candidatus Magnetoovum chiemensis	1217	Open in IMG/M
3300025322\|Ga0209641_10971233	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	554	Open in IMG/M
3300025923\|Ga0207681_11253719	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	623	Open in IMG/M
3300025937\|Ga0207669_10660041	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	856	Open in IMG/M
3300025961\|Ga0207712_11534025	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	597	Open in IMG/M
3300026075\|Ga0207708_10903591	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	764	Open in IMG/M
3300026090\|Ga0208912_1002337	All Organisms → cellular organisms → Bacteria	2383	Open in IMG/M
3300026118\|Ga0207675_101113067	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	810	Open in IMG/M
3300027907\|Ga0207428_10142832	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1826	Open in IMG/M
3300030606\|Ga0299906_10139596	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1924	Open in IMG/M
3300030606\|Ga0299906_10783170	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	710	Open in IMG/M
3300030620\|Ga0302046_10115725	All Organisms → cellular organisms → Bacteria	2191	Open in IMG/M
3300030620\|Ga0302046_11558685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	509	Open in IMG/M
3300031359\|Ga0307426_1085943	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1210	Open in IMG/M
3300031543\|Ga0318516_10839573	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	518	Open in IMG/M
3300031576\|Ga0247727_10001577	All Organisms → cellular organisms → Bacteria	53659	Open in IMG/M
3300031576\|Ga0247727_10176540	All Organisms → cellular organisms → Bacteria	2004	Open in IMG/M
3300031720\|Ga0307469_11997073	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	563	Open in IMG/M
3300031834\|Ga0315290_10047721	All Organisms → cellular organisms → Bacteria	3470	Open in IMG/M
3300031834\|Ga0315290_10325616	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300031908\|Ga0310900_10758610	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	782	Open in IMG/M
3300031949\|Ga0214473_10999908	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	883	Open in IMG/M
3300031949\|Ga0214473_11682030	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	632	Open in IMG/M
3300032174\|Ga0307470_10772876	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300032180\|Ga0307471_100428824	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300032275\|Ga0315270_11128967	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	521	Open in IMG/M
3300032397\|Ga0315287_11203347	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	872	Open in IMG/M
3300033004\|Ga0335084_10534411	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1203	Open in IMG/M
3300033413\|Ga0316603_11941725	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	557	Open in IMG/M
3300033513\|Ga0316628_101946304	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	781	Open in IMG/M
3300033550\|Ga0247829_10095962	All Organisms → cellular organisms → Bacteria	2219	Open in IMG/M
3300034177\|Ga0364932_0238456	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	688	Open in IMG/M
3300034178\|Ga0364934_0307330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.61%
Host-Associated	Host-Associated	29.41%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	44.12%
Plants	Host-Associated → Plants	29.41%
Aquatic	Environmental → Aquatic	25.49%
Wastewater	Engineered → Wastewater	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.49%
Sediment	Environmental → Aquatic → Sediment	13.73%
Freshwater	Environmental → Aquatic → Freshwater	7.84%
Marine	Environmental → Aquatic → Marine	3.92%
Cave	Environmental → Terrestrial → Cave	3.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Floodplain	Environmental → Terrestrial → Floodplain	1.96%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.98%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.73%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.92%
Lake	Environmental → Aquatic → Freshwater → Lake	3.92%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	3.92%
Sediment	Environmental → Aquatic → Marine → Sediment	1.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.98%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.98%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.84%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.92%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	3.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.98%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.98%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.71%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	7.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.90%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	4.90%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.94%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	1.96%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.96%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.98%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.98%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.98%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004067	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011398	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2	Environmental	Open in IMG/M
3300011407	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT454_2	Environmental	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014297	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300014861	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT27_16_10D	Environmental	Open in IMG/M
3300014881	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1Da	Environmental	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300021051	Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos A1	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300022209	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13	Environmental	Open in IMG/M
3300022218	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_13	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026090	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031359	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-40	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034177	Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_103120482	3300000550	Soil	LSAEAGRAGYDAIVAAPADARECRGGRSGTTAMWYSIAHPGVGEWYLKGWGSFNANAPQKKFWLGFIPLYGWPGYLQVKSAIDAKNCRTNDDLSRRR*
F14TC_1026457231	3300000559	Soil	MRMTILALAATFALATPAQAAEHRRCPGNRSPESGTWFSILHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDAHHCRTNDDL*
Ga0055485_100151232	3300004067	Natural And Restored Wetlands	MQKTLFVLIACLVLAAPAGAAERRRCPNNRSPEGATWYSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGFIPFYGWPGYLQVKSAIDAHHCRVNDDL*
Ga0062593_1011080611	3300004114	Soil	MNILVVLLAILGLAAHADAAVRHRCPDDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGLIPIYGWPGYLQIKSAIDSHHCRTNDDL*
Ga0062589_1002305202	3300004156	Soil	MRGRILAMNILVVLLAILGLAAHADAAVRHRCPDDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGLIPIYGWPGYLQIKSAIDSHHCRTNDDL*
Ga0062589_1018711322	3300004156	Soil	RGSEREGSGPGPGSCDRTPAMRSTKVAVVVSLAILGLAIRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTDDDL*
Ga0062590_1009664702	3300004157	Soil	MRSTKVAVVVSLAILGLAIRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTDDDL*
Ga0062591_1014135921	3300004643	Soil	MQSVNFVLVVLLAILGVATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHDCRPSDDL*
Ga0065705_101828913	3300005294	Switchgrass Rhizosphere	LGLATQADAAVRHRCPDDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGLIPIYGWPGYLQVKSAIDSHHCRSNDDL*
Ga0065707_106514371	3300005295	Switchgrass Rhizosphere	ATLPTGRSNLQVTVESSHPPHASACGRTPTMQSRNFVLVVLLVILGLAAQGDAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHHCRPNDDL*
Ga0070692_108029372	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPSDDL*
Ga0070692_110708501	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGLIPIYGWPGYLQVKSAIDSHHCRSNDDL*
Ga0070669_1005146251	3300005353	Switchgrass Rhizosphere	MRSTKVAVVVSLAILGLAIRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDCHNCRTDDDL*
Ga0070669_1010433441	3300005353	Switchgrass Rhizosphere	GRTRTMQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPSDDL*
Ga0070708_1020202921	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MQSRNFVLTVLLVILGLAAQGDAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKRFWLGFIPLYGWPGYLQIKSAIDSHNCRPNDDL*
Ga0070662_1010156792	3300005457	Corn Rhizosphere	MRSTKVAVVVSLAILGLAIRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDS
Ga0070698_1001320644	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNYVLVALLAILGLATQTDAAVRRRCPNDRSPEAATWLSIAHPGLGEWYLKDWGPFFDNAPQKKFWLGLIPIYGWPGYLQIKSAIDSNNCRSNDDL*
Ga0070672_1008145321	3300005543	Miscanthus Rhizosphere	ALGRAAKGRVEPHSPRPFQPPGYPSNRSRAPHAGACGRTRTMQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPNDDL*
Ga0070704_1019004861	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRP
Ga0068859_1002517405	3300005617	Switchgrass Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHDCRPSDDL*
Ga0074472_104396832	3300005833	Sediment (Intertidal)	LRIAVFVFVAAFLLLARPDSAAARPCPGGRSSESATWFSVLHPGLGEWYLKGWGGFWDNAPQKKFWFGFIPIYGWPGYLQVKSAIDANHCRTNDQL*
Ga0075428_1002237813	3300006844	Populus Rhizosphere	MRSTKVAVVVSLAILGLAMRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTDDDL*
Ga0075428_1011685393	3300006844	Populus Rhizosphere	TMQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHHCRPNDDL*
Ga0075428_1014048371	3300006844	Populus Rhizosphere	MNYVVVLLAILGLATRADAAVQRRCPNDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGLIPIYGWPGYLQVKSAIDSNRCHWNDDL*
Ga0075428_1015314942	3300006844	Populus Rhizosphere	MHRPWILLLVILSLASHANAAERRRCPDNRSPEGATWLSIAHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTNDDL*
Ga0075428_1024985942	3300006844	Populus Rhizosphere	MNRMLVVLLVVLSLATPADAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLEGWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDAHDCRSNDDL*
Ga0075421_1027914261	3300006845	Populus Rhizosphere	MNYVVVLLAILGLATRADAAVQRRCPNDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGLIPIYGWPGYLQVKSAIDSHHCRSNDDL*
Ga0111539_100187733	3300009094	Populus Rhizosphere	MQSRNFVLVVLLVILGLAAQGDAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHHCRPNDDL*
Ga0111539_133298871	3300009094	Populus Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCR
Ga0114129_103057912	3300009147	Populus Rhizosphere	MRNLLVLLLAILSLVTQADAAVQRRCPNDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGLIPIYGWPGYLQVKSAIDSHHCRSNDDL*
Ga0114129_105826613	3300009147	Populus Rhizosphere	MRSTKVAVVVSLAILGLATRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTDDDL*
Ga0114129_124043771	3300009147	Populus Rhizosphere	EPTRQSMKYVLVVLLAILGLATQADAAVRRRCPNDRSPETATWLSIAHPGLGEWYLQGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHDCRPNDDL*
Ga0111538_101311031	3300009156	Populus Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPSDDL*
Ga0111538_120323122	3300009156	Populus Rhizosphere	AMRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTDDDL*
Ga0105092_100308557	3300009157	Freshwater Sediment	MRNALLVLIATLVLAAPAGAAESRRCPNDRSPESATWLSVAHPGLGEWYLKGWGGFWENAPQLKFWLGFIPIYGWPGYLQVKSAIDANHCETHDEI*
Ga0075423_108146941	3300009162	Populus Rhizosphere	MNHVLIVLLAILGLATQADAAVERRCPGDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKNCWLGLIPLYGWPGYLQVKSAIDSHNCRSNDDL*
Ga0105249_127558151	3300009553	Switchgrass Rhizosphere	MQSRNFVLTVLLVILGLAAQGDAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHHCRPNDDL*
Ga0105340_11359142	3300009610	Soil	MRIAAFALIATFALLVQADAAEARPCPGGRSGESATWLSIAHPGLGEWYLRSWGSFWDRAPQKKFWLGFIPLYGWPGYLQVKSARDAHRCRTNDGLGWND*
Ga0131077_100053775	3300009873	Wastewater	MKCARVALLVGLVCALAAPADAAERCPGNRNRDAATWYSIAHPGLGEWYLKGWGGFWSNAPQKKFWLGFIPIYGWPGYLQVKSAIDANHCRTNDEI*
Ga0105239_129399172	3300010375	Corn Rhizosphere	MQSRNFVLVVLLVILGLAAQGDAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPGYGWPGYLQVKSAVDSKALGRNIQYWSL*
Ga0137348_10201723	3300011398	Soil	MRIAAFALIATFALLVQADAAEARPCPGGRSGESATWLSIAHPGLGEWYLKDWGSFWDRAPQKKFWLGFIPLYGWPGYLQVKSARDAHRCRTNDGLGWND*
Ga0137450_10175352	3300011407	Soil	MRLAVFAFVAAFVLFAHADSATARTCPGGGSNESATWYSILHPGLGEWYLKGWGGFWGHAPQKKFWLGFIPIYGWPGYLQVKSAIDANHCRTNDELHG*
Ga0137456_12166521	3300011428	Soil	MNHALIALVAILILAAPAGAAEHRRCPNDRSPEAATWLSVAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPLYGWPGYLQVVSAIDAKNCRTNDWRE*
Ga0137459_10463832	3300012228	Soil	MRLTVFAFVAAFVLFAHADSATARTCPGGGSNESATWYSILHPGLGEWYLKGWGGFWGHAPQKKFWLGFIPIYGWPGYLQVKSAIDANHCRTNDELHG*
Ga0075302_11325281	3300014269	Natural And Restored Wetlands	MSRSLMVLISVLILAGPAGAAERRRCADNRSPESATWLSIAHPGLGEWYLKHWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDAHNCRVNDNL*
Ga0075326_10084352	3300014271	Natural And Restored Wetlands	LSRRKARVPRAGEEKAMRIHAFVLAAAVAMLAGADAAEARTCPGGRSGGSATWMSIGHPGLGEWYLKGWGDFWDHAPQKKFWLGFIPIYGWPGYLQVKSARDANRCRTNDNLRWNE*
Ga0075306_10888751	3300014297	Natural And Restored Wetlands	PPPRRLNVKHPPRIVFALLAMAAILVAGVPANATVRHRCPNNRNPDAATWYSIAHPGLGEFYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDAHNCRVNDDL*
Ga0075331_10199651	3300014310	Natural And Restored Wetlands	SVTLSRRKARVPRAGEEKAMRIHAFVLAAAVAMLAGADAAEARTCPGGRSGGSATWMSIGHPGLGEWYLKGWGDFWDHAPQKKFWLGFIPIYGWPGYLQVKSARDANRCRTNDNLRWNE*
Ga0180061_10203401	3300014861	Soil	ADSATARTCPGGGSNESATWYSILHPGLGEWYLKGWGGFWGHAPQKKFWLGFIPIYGWPGYLQVKSAIDANHCRTNDELHG*
Ga0180094_10068461	3300014881	Soil	MKNALLVLIATLVLAAPAGAAVRRKCPNDRSPESATWFSILHPGLGEWYLVNWGPFFDNAPQKKFWLGFIPIFGWPGYLQVKSAIDAHNCRVNDNL*
Ga0180063_10793322	3300014885	Soil	MKNALLVLIMALILAAPAGAAEYRRCPNDRSPEAATWLSIAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPLYGWPGYLQVKSAIDSHHCRTNDNL*
Ga0173483_109604361	3300015077	Soil	TKVAVVVSLAILGLAMRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTDDDL*
Ga0132258_108542561	3300015371	Arabidopsis Rhizosphere	MNRVLVVLLAVLVLSTQVNAAVRRRCPDDRSPEAATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGFIPIYGWPGYLQVKSAIDSHDCRSNDDL*
Ga0132258_110638945	3300015371	Arabidopsis Rhizosphere	MRSRRFAVVALLVIIGVAASADAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLKGWGPFFDNAPQKRFWLGFIPLYGWPGYLQVKSAIDASKCYTN
Ga0132256_1022184861	3300015372	Arabidopsis Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPNDDL*
Ga0184615_100089552	3300018059	Groundwater Sediment	MHYALIVLFAITVLAAPAGAAERRSCPNNRSPEAATWLSIAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPLYGWPGYLQVKSAIDSHHCRTNDDL
Ga0184615_100173912	3300018059	Groundwater Sediment	VKNALLVLIAILVAGVVAAPADAATRRRCPNNRSPESATWLSIAHPGLGEYYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRVNDKL
Ga0184615_103478062	3300018059	Groundwater Sediment	MRLAVFAFVAAFVLFAHADSATARTCPGGGSNESATWFSVLHPGLGEWYLKGWGGFWGHAPQKKFWLGFIPIYGWPGYLQVKSAIDANHCRTNDELHG
Ga0184637_1000032018	3300018063	Groundwater Sediment	MNHALIVLLAITVLAAPAGAAEHRRCPDNRSPEAATWLSVAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPFYGWPGYLQVKSAIDSHHCRVNDDL
Ga0184627_101225263	3300018079	Groundwater Sediment	AAPAGAAEHRRCPDNRSPEAATWLSVAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPFYGWPGYLQVKSAIDSHHCRVNDDL
Ga0187892_1000126246	3300019458	Bio-Ooze	MHSVLLLLVALWVLVAPAEAAAARRCAGGRSPEAATWLSIAHPGLGEWYLKGWGPFWDKAPQKKFWLGFIPIYGWPGYLQVKSAIDAHQCRVNDDLERRN
Ga0187892_101094131	3300019458	Bio-Ooze	MRYVLLVLIAALLLAAPAGAAENRRCPNDRSPEAATWLSVAHPGLGEWYLKGWGPFWQNAPQLKFWLGFIPIYGWPGYLQVISA
Ga0206224_10122342	3300021051	Deep Subsurface Sediment	MKNALLVLIATLVLAAPASAAVRRKCPNDRSPESATWFSILHPGLGEWYLVNWGPFFDNAPQKKFWLGFIPIYGWPGYLQVKSAIDANHCRTNDELHR
Ga0210379_100522832	3300021081	Groundwater Sediment	MSRSLIVLIAILILAGPAAAAEYRRCPNNRSPESATWLSIAHPGLGEWYLEGWGPFWDNAPQKKFWLGFIPIYGWPGYLQVKSAIDSHHCRVNDQL
Ga0210377_100133045	3300021090	Groundwater Sediment	MKNALLVLFAVSILAAPAHAATHRRCPGNRSPESATWLSIAHPGLGEYYLNGWGPFFDNAPQKRFWLGFIPLYGWPGYLQIKSAIDSHNCRISDDL
Ga0210377_100136568	3300021090	Groundwater Sediment	MHYALIVLLSIIVFAAPAGAAEHRRCENNRSPEAATWLSIAHPGLGEWFLKGWGPFFDNAPQKKFWLGFIPIYGWPGYLQVKSAIDSHNCRINDNL
Ga0224497_100384822	3300022209	Sediment	VKTAAIALLASFVLALPASAEKTRRCSGDQSPEAATWLSIAHPGLGEWYLKDWGPFWDKAPQKKFWLGFIPGYGWPGYLQVKSAIDAHHCRVNDDLTRRK
Ga0224502_100821231	3300022218	Sediment	TRPSRPRQHWGESVKTAAIALLASFVLALPASAEKTRRCSGDQSPEAATWLSIAHPGLGEWYLKDWGPFWDKAPQKKFWLGFIPGYGWPGYLQVKSAIDAHHCRVNDDLTRRK
Ga0209641_109712331	3300025322	Soil	RIAAFAFLAAFALLVRADAAEARKCPGGRSGESATWLSIAHPGLGEWYLKGWGAFWDRAPQKKFWFGFIPIYGWPGYLQVKSARDAHRCRTSDGLRWND
Ga0207681_112537191	3300025923	Switchgrass Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPSDDL
Ga0207659_114466101	3300025926	Miscanthus Rhizosphere	ISRRGSEREGSGPGPGSCDRTPAMRSTKVAVVVSLAILGLAIRADAAVRRRCPGDRSPEAATWLSVGHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTDDDL
Ga0207669_106600411	3300025937	Miscanthus Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPNDDL
Ga0207712_115340251	3300025961	Switchgrass Rhizosphere	PTMQSRNFVLVVLLVILGLAAQGDAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHHCRPNDDL
Ga0207708_109035911	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MQSVNFVLVVLLAILGVATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHDCRPSDDL
Ga0208912_10023372	3300026090	Natural And Restored Wetlands	MRIHAFVLAAAVAMLAGADAAEARTCPGGRSGGSATWMSIGHPGLGEWYLKGWGDFWDHAPQKKFWLGFIPIYGWPGYLQVKSARDANRCRTNDNLRWNE
Ga0207675_1011130671	3300026118	Switchgrass Rhizosphere	MQSVNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSA
Ga0207428_101428322	3300027907	Populus Rhizosphere	VNFVLVVLLAILGLATQGDAAVRRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPSDDL
Ga0299906_101395962	3300030606	Soil	MKHVVIVLLAISVLAAPAGAAERRRCPNDRSPEAATWLSVAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPFYGWPGYLQVKSAIDSHNCRVNDDL
Ga0299906_107831701	3300030606	Soil	APAEAAASRRCPNDRSPESATWLSIAHPGLGEWYLKGWGGFFTNAPQRKFWLGFIPLYGWPGYLQVKSAIDANHCRVNDEL
Ga0302046_101157253	3300030620	Soil	MKNTLFVLTATLILILAAPAEAAASRRCPNDRSPESATWLSIAHPGLGEWYLKGWGGFFTNAPQRKFWLGFIPLYGWPGYLQVKSAIDANHCRVNDEL
Ga0302046_115586851	3300030620	Soil	MRITAFALIATFALLVQAHAAEARPCPGGRSGESATWLSIAHPGLGEWYLKSWGSFWDRAPQKKFWLGFIPLYGWPGYLQVKSARDAHRCRTNDGLGWND
Ga0307426_10859432	3300031359	Salt Marsh	MRRIACCLVVLALLAPAAAGADESPSCRNGRSKNSAMWLSILHPGLGEWYLNRWGSFAVNAPQRKFWLGFIPFYGWPGYLQVKSARDARRCRTNDQLGWNE
Ga0318516_108395731	3300031543	Soil	MFEIRALLLATVVFCAFATPAHADVHCRGGKHRDAAMWLSIAHPGLGEYYLRGYGNFWDHAPQKKFWLGFIPIYGWPGYLQVKSAIDSHHCRTNDDLAFRD
Ga0247727_1000157730	3300031576	Biofilm	MRIAALVVAAAVAGVTLAEAAYAHPCPGRRSSETATWLSIAHPGLGEWYLKRWGPFFDNAPQKKFWLGFIPFYGWPGYLQIKSAIDANHCRTNDELSRRR
Ga0247727_101765402	3300031576	Biofilm	MRIAAVAFVAAGVLLTDAEGAAARTCSGGGSNESATWFSVLHPGLGEWYLKGWGGFWAHAPQKKFWLGFIPIYGWPGYLQVKSAIDANHCRTNDDL
Ga0307469_119970732	3300031720	Hardwood Forest Soil	MNYVLVALLAILGLTTQADAAVRRRCPDNRSPEVATWLSIAHPGLGEWYLQGWGPFFDNAPQKKFWLGLIPIYGWPGYLQVKSAIDSHDCRANDDL
Ga0315290_100477212	3300031834	Sediment	VKNALLLLITILVAGVVATPADAATRRRCPNNRSPEAATWLSIAHPGLSEFYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDSHHCRVNDDL
Ga0315290_103256163	3300031834	Sediment	VKNTLLVLIVSVVVVVAAAPADAAKRRRCPDDHSPEAATWLSIAHPGLGEYYLDGWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDAHHCRVNDDL
Ga0310892_109837262	3300031858	Soil	VTVESSRPPHASACGRTPAMQSRNFVLVVLLVILGLAAQGDAAVRRRCPGDRSPEAATWLSIGHPGLGEWYLKEWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDSHNCRTNDDL
Ga0310900_107586102	3300031908	Soil	MYRASILLLVILILASHADAAERRRCPDNRSPEGATWLSIAHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRTNDDL
Ga0214473_109999082	3300031949	Soil	MKNALIVLITALVLAAPAGAAEYRSCPNDRSPEAATWLSIAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPLYGWPGYLQVKSAIDSHHCRTNDDL
Ga0214473_116820302	3300031949	Soil	MHRALIFVLGILVLAAPASAAERRRCPDNRSPESATWLSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGFIPIYGWPGYLQVKSAIDSHNCRVNDNL
Ga0307470_107728762	3300032174	Hardwood Forest Soil	MRMTVLALAATFALAAPAQAAEHRRCPGNRSPESGTWFSILHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQILSAIDAGHGRTSDNLTPID
Ga0307471_1004288241	3300032180	Hardwood Forest Soil	MRMTVLALAATFALAAPAQAAEHRRCPGNRSPESGTWFSILHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDAHHCRTDDSL
Ga0315270_111289671	3300032275	Sediment	MNRIVIVLLAALLLAAPAGAAGGRRCPGNRNPESATWLSIAHPGLGEYYLKGWGPFFDNAPQKKFWLGFIPIYGWPGYLQVKSAIDAHHCRVNDEL
Ga0315287_112033471	3300032397	Sediment	LLITILVAGVVATPADAATRRRCPNNRSPEAATWLSIAHPGLSEFYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQVKSAIDSHHCRVNDDL
Ga0335084_105344112	3300033004	Soil	MRSTFLVVVASLVFASAAGAAETCPGNKSPQGAMWWSILHPGVGEYYLKGWGPFFDNMPQKKFWLGFIPIYGWPGYLQVKSAIDSHHCRTNDDLTFRH
Ga0316603_119417251	3300033413	Soil	VQVAEKIERQVVKFPLIALLMLLILAAPAVAHANRRCPGDRSPGGATWYSIAHPGLGEWYLKGWGPFFDNAPQKKFWLGFIPIFGWPGYLQIKSAIDSHNCRTNDDLATR
Ga0316628_1019463042	3300033513	Soil	MRITMLTLVAALTLALPAAAAENRRCPGDRSPEGATWFSILHPGLGEWYLKDWGPFFDNAPQKKFWLGFIPIYGWPGYLQVKSAIDAHHCRTNDDL
Ga0247829_100959622	3300033550	Soil	MQSVNFVLVVLLAILGLATQGDAAVSRRCPDDRSPEAATWLSIGHPGLGEWYLNGWGPFFDNAPQKKFWLGFIPLYGWPGYLQIKSAIDSHNCRPNDDL
Ga0364932_0238456_324_626	3300034177	Sediment	MRIAAFAFLAAFALLVQADAAEARKCPGGHSGESATWLSIAHPGLGEWYLKGWGSFWDRAPQKKFWLGFIPIYGWPGYLQVKSARDAHRCRTSDGLRWND
Ga0364934_0307330_1_279	3300034178	Sediment	MNHTLIVLLAITVLAASAGAAEHRSCPNDRSPEAATWLSVAHPGLGEWFLKGWGPFWDNAPQKKFWLGFIPLYGWPGYLQVKSAIDSHHCRTN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100626

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences