Metagenome / Metatranscriptome Family F100619

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100619
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	67 residues
Representative Sequence	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPAPPQIREDHPVSSGHRTRRKHV
Number of Associated Samples	83
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	32.35 %
% of genes near scaffold ends (potentially truncated)	22.55 %
% of genes from short scaffolds (< 2000 bps)	78.43 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.824 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (10.784 % of family members)
Environment Ontology (ENVO)	Unclassified (23.529 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.098 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.11% β-sheet: 0.00% Coil/Unstructured: 64.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08843	AbiEii	26.47
PF07995	GSDH	7.84
PF07394	DUF1501	4.90
PF01910	Thiamine_BP	3.92
PF13091	PLDc_2	2.94
PF05685	Uma2	0.98
PF02401	LYTB	0.98
PF07587	PSD1	0.98
PF04909	Amidohydro_2	0.98
PF02119	FlgI	0.98
PF13386	DsbD_2	0.98
PF01909	NTP_transf_2	0.98
PF01609	DDE_Tnp_1	0.98
PF13472	Lipase_GDSL_2	0.98
PF07631	PSD4	0.98
PF00873	ACR_tran	0.98
PF00756	Esterase	0.98
PF00106	adh_short	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	26.47
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	7.84
COG0011	Thiamin-binding stress-response protein YqgV, UPF0045 family	Coenzyme transport and metabolism [H]	3.92
COG0761	4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH	Lipid transport and metabolism [I]	1.96
COG1706	Flagellar basal body P-ring protein FlgI	Cell motility [N]	0.98
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.98
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.98
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.98
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.98
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.98
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.98
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.82 %
Unclassified	root	N/A	41.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.82 %
Unclassified	root	N/A	41.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.82 %
Unclassified	root	N/A	41.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	33.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.98 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	23.53 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.96 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	5.88 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	5.88 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.96 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %
Rhodothermaeota	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota	0.98 %
Candidatus Aerophobetes	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
unclassified Candidatus Brocadiae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae	5.88 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	5.88 %
unclassified Opitutae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae	1.96 %
Rhodothermia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia	0.98 %
unclassified Aerophobetes	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Candidatus Brocadiae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	5.88 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	5.88 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1.96 %
Candidatus Aerophobetes bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium	0.98 %
Rhodothermales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Candidatus Brocadiae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	5.88 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	5.88 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1.96 %
unclassified Rhodothermales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → unclassified Rhodothermales	0.98 %
Candidatus Aerophobetes bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.18 %
Candidatus Brocadiae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	5.88 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	5.88 %
Opitutae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	1.96 %
Rhodothermales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → unclassified Rhodothermales → Rhodothermales bacterium	0.98 %
Candidatus Aerophobetes bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium	0.98 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10588423	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2535	Open in IMG/M
3300003319\|soilL2_10156738	All Organisms → cellular organisms → Bacteria	2375	Open in IMG/M
3300003324\|soilH2_10301952	Not Available	1053	Open in IMG/M
3300003324\|soilH2_10389461	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1358	Open in IMG/M
3300004114\|Ga0062593_102096932	Not Available	631	Open in IMG/M
3300004463\|Ga0063356_100435667	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300004463\|Ga0063356_100735657	All Organisms → cellular organisms → Bacteria	1364	Open in IMG/M
3300004633\|Ga0066395_10809027	Not Available	563	Open in IMG/M
3300004643\|Ga0062591_101991057	Not Available	598	Open in IMG/M
3300005364\|Ga0070673_101037548	Not Available	764	Open in IMG/M
3300005441\|Ga0070700_101051498	Not Available	672	Open in IMG/M
3300005471\|Ga0070698_100104180	All Organisms → cellular organisms → Bacteria → PVC group	2807	Open in IMG/M
3300005529\|Ga0070741_10380991	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300005534\|Ga0070735_10659746	Not Available	619	Open in IMG/M
3300005537\|Ga0070730_10032516	All Organisms → cellular organisms → Bacteria	3925	Open in IMG/M
3300005538\|Ga0070731_10000803	All Organisms → cellular organisms → Bacteria	37398	Open in IMG/M
3300005544\|Ga0070686_100960384	Not Available	699	Open in IMG/M
3300005549\|Ga0070704_100148698	All Organisms → cellular organisms → Bacteria	1839	Open in IMG/M
3300005549\|Ga0070704_101695704	Not Available	584	Open in IMG/M
3300005561\|Ga0066699_11267351	Not Available	505	Open in IMG/M
3300005615\|Ga0070702_101095597	Not Available	636	Open in IMG/M
3300005718\|Ga0068866_11343536	Not Available	521	Open in IMG/M
3300005719\|Ga0068861_101622404	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	638	Open in IMG/M
3300005764\|Ga0066903_103824173	Not Available	809	Open in IMG/M
3300005829\|Ga0074479_10856125	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300005836\|Ga0074470_10018877	All Organisms → cellular organisms → Bacteria	35288	Open in IMG/M
3300006031\|Ga0066651_10838288	Not Available	500	Open in IMG/M
3300006046\|Ga0066652_100248536	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1556	Open in IMG/M
3300006046\|Ga0066652_100910486	Not Available	839	Open in IMG/M
3300006844\|Ga0075428_100546836	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1238	Open in IMG/M
3300006854\|Ga0075425_100610928	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300006865\|Ga0073934_10439175	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	793	Open in IMG/M
3300006871\|Ga0075434_101247782	Not Available	755	Open in IMG/M
3300006894\|Ga0079215_11232075	Not Available	572	Open in IMG/M
3300006918\|Ga0079216_11110704	Not Available	625	Open in IMG/M
3300007004\|Ga0079218_13040445	Not Available	565	Open in IMG/M
3300009094\|Ga0111539_10090362	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	3599	Open in IMG/M
3300009100\|Ga0075418_10536385	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	1257	Open in IMG/M
3300009137\|Ga0066709_103393259	Not Available	579	Open in IMG/M
3300009146\|Ga0105091_10110283	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1267	Open in IMG/M
3300009177\|Ga0105248_12534770	Not Available	584	Open in IMG/M
3300010337\|Ga0134062_10163345	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	997	Open in IMG/M
3300010359\|Ga0126376_11027630	Not Available	826	Open in IMG/M
3300010397\|Ga0134124_12276046	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	582	Open in IMG/M
3300010398\|Ga0126383_11725849	Not Available	715	Open in IMG/M
3300010399\|Ga0134127_10022440	All Organisms → cellular organisms → Bacteria → PVC group	4924	Open in IMG/M
3300010399\|Ga0134127_11472752	Not Available	753	Open in IMG/M
3300010400\|Ga0134122_10008704	All Organisms → cellular organisms → Bacteria	7566	Open in IMG/M
3300010400\|Ga0134122_10085745	All Organisms → cellular organisms → Bacteria	2472	Open in IMG/M
3300010400\|Ga0134122_10098963	All Organisms → cellular organisms → Bacteria	2306	Open in IMG/M
3300010400\|Ga0134122_10307306	Not Available	1364	Open in IMG/M
3300010401\|Ga0134121_10427993	Not Available	1203	Open in IMG/M
3300010401\|Ga0134121_10934173	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	845	Open in IMG/M
3300010401\|Ga0134121_12263843	Not Available	581	Open in IMG/M
3300010401\|Ga0134121_13275328	Not Available	501	Open in IMG/M
3300011433\|Ga0137443_1092540	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	863	Open in IMG/M
3300011437\|Ga0137429_1175049	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	670	Open in IMG/M
3300011443\|Ga0137457_1328999	Not Available	521	Open in IMG/M
3300012038\|Ga0137431_1048799	All Organisms → cellular organisms → Bacteria → PVC group	1158	Open in IMG/M
3300012167\|Ga0137319_1109449	Not Available	555	Open in IMG/M
3300012212\|Ga0150985_118454011	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	573	Open in IMG/M
3300012469\|Ga0150984_105762062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium	685	Open in IMG/M
3300012944\|Ga0137410_10001335	All Organisms → cellular organisms → Bacteria	16889	Open in IMG/M
3300012981\|Ga0168316_140687	Not Available	655	Open in IMG/M
3300017965\|Ga0190266_10460641	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	727	Open in IMG/M
3300018482\|Ga0066669_10548400	Not Available	1007	Open in IMG/M
3300019360\|Ga0187894_10447769	All Organisms → cellular organisms → Bacteria → PVC group	567	Open in IMG/M
3300020202\|Ga0196964_10160710	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	1023	Open in IMG/M
3300025922\|Ga0207646_10162685	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2014	Open in IMG/M
3300025936\|Ga0207670_10314964	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1230	Open in IMG/M
3300026075\|Ga0207708_11195364	Not Available	665	Open in IMG/M
3300027857\|Ga0209166_10022386	All Organisms → cellular organisms → Bacteria	3925	Open in IMG/M
3300027869\|Ga0209579_10001480	All Organisms → cellular organisms → Bacteria	19343	Open in IMG/M
3300027886\|Ga0209486_10558734	Not Available	720	Open in IMG/M
3300027907\|Ga0207428_10062639	All Organisms → cellular organisms → Bacteria	2940	Open in IMG/M
3300027986\|Ga0209168_10435749	All Organisms → cellular organisms → Bacteria → PVC group	636	Open in IMG/M
3300029636\|Ga0222749_10668891	Not Available	568	Open in IMG/M
3300031576\|Ga0247727_10301606	Not Available	1360	Open in IMG/M
3300031716\|Ga0310813_10000212	All Organisms → cellular organisms → Bacteria	42420	Open in IMG/M
3300031716\|Ga0310813_10122699	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	2053	Open in IMG/M
3300031716\|Ga0310813_10434808	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300031716\|Ga0310813_10570735	Not Available	997	Open in IMG/M
3300031716\|Ga0310813_10639977	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	944	Open in IMG/M
3300031716\|Ga0310813_11014217	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	757	Open in IMG/M
3300031718\|Ga0307474_10917200	All Organisms → cellular organisms → Bacteria → PVC group	693	Open in IMG/M
3300031754\|Ga0307475_10046975	All Organisms → cellular organisms → Bacteria	3228	Open in IMG/M
3300031854\|Ga0310904_10532759	Not Available	792	Open in IMG/M
3300031908\|Ga0310900_11445744	Not Available	578	Open in IMG/M
3300031912\|Ga0306921_10243554	All Organisms → cellular organisms → Bacteria	2107	Open in IMG/M
3300031962\|Ga0307479_10369403	All Organisms → cellular organisms → Bacteria → PVC group	1418	Open in IMG/M
3300032001\|Ga0306922_11033047	All Organisms → cellular organisms → Bacteria → PVC group	846	Open in IMG/M
3300032001\|Ga0306922_11518106	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300032005\|Ga0307411_11333045	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → unclassified Candidatus Brocadiae → Candidatus Brocadiae bacterium	655	Open in IMG/M
3300032163\|Ga0315281_10065085	All Organisms → cellular organisms → Bacteria	4352	Open in IMG/M
3300032179\|Ga0310889_10417501	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	669	Open in IMG/M
3300032180\|Ga0307471_100699498	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium	1178	Open in IMG/M
3300032180\|Ga0307471_100964913	Not Available	1020	Open in IMG/M
3300032180\|Ga0307471_103287116	Not Available	573	Open in IMG/M
3300032205\|Ga0307472_100867421	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Rhodothermaeota → Rhodothermia → Rhodothermales → unclassified Rhodothermales → Rhodothermales bacterium	832	Open in IMG/M
3300032261\|Ga0306920_101227383	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1082	Open in IMG/M
3300032421\|Ga0310812_10020098	All Organisms → cellular organisms → Bacteria	2345	Open in IMG/M
3300033289\|Ga0310914_11536032	Not Available	569	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.29%
Host-Associated	Host-Associated	14.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.49%
Plants	Host-Associated → Plants	14.71%
Aquatic	Environmental → Aquatic	9.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Sediment	Environmental → Aquatic → Sediment	6.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Cave	Environmental → Terrestrial → Cave	1.96%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.98%
Geologic	Environmental → Terrestrial → Geologic	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.78%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Lake	Environmental → Aquatic → Freshwater → Lake	0.98%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%
Mine	Environmental → Terrestrial → Geologic → Mine	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.98%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.98%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.98%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.84%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.98%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.98%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.98%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006865	Hot spring sediment bacterial and archeal communities from British Columbia, Canada, to study Microbial Dark Matter (Phase II) - Larsen N4 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012038	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2	Environmental	Open in IMG/M
3300012167	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT333_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012981	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DT8	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019360	White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaG	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_105884233	3300000891	Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRIMEGLLSNPPAPAQFREDHPVSSGHRTRRKNV*
soilL2_101567381	3300003319	Sugarcane Root And Bulk Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRILEGLISHPPAPPQIREDHPVSSDHRTRRRRRGGLRGSG
soilH2_103019522	3300003324	Sugarcane Root And Bulk Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRILEGLLSNPPAPAQFREDHPVSSGHRTRRKHV*
soilH2_103894612	3300003324	Sugarcane Root And Bulk Soil	MVGRWKERLKKMGEANEQARTTETRRLTLNRAARIVEGLISDPPAVPRLRADHPVSSGHRTRRKNV*
Ga0062593_1020969322	3300004114	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRADHPVSSGHRTRRKHV*
Ga0063356_1004356672	3300004463	Arabidopsis Thaliana Rhizosphere	MTMVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLISNPPAPPQIRTDHPVSSGHRTRRKHV*
Ga0063356_1007356572	3300004463	Arabidopsis Thaliana Rhizosphere	MVGRWKERLKKLGEANEKARTTETRRLTVNRASRILEGLLSNPPGPAQFREEHPVSSGHRTRRKNV*
Ga0066395_108090272	3300004633	Tropical Forest Soil	ILIAMVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPGPAQFREEHPISSGHRTRRKNV*
Ga0062591_1019910572	3300004643	Soil	ERLKKMAAANEQARQTETRRMTPQRAKRVLEGLLTDPPAPPVPREEHPVSSGHRTRRKHV
Ga0070673_1010375482	3300005364	Switchgrass Rhizosphere	KKLGEANEQARNTETRRLTVNRASRILEGLLSDPPAPPRLRADHPVSCGHRTRRKNV*
Ga0070700_1010514982	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRIMEGLLSNPPAPARFREDHPVSSGHRTRRKNV*
Ga0070698_1001041802	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MVGRWKDRLKKMGEANEQARTTETRRLTVNRASRILEGLLSDPPAPPRLRTDHPVSSGHRTRRKN
Ga0070741_103809912	3300005529	Surface Soil	MIGRWKERLKKMAVANDEARRTETRRMTPKRAKEVLEGLLSDPPAPPVPREDHPVSSGHRTRRKHVKP*
Ga0070735_106597462	3300005534	Surface Soil	MIGRWKERLKKMAVANEEARRTETRRMTPKRAKEVLEGLLSDPPAPPVPKEDHPVSSGHRTRRKNVKP*
Ga0070730_100325164	3300005537	Surface Soil	MIGRWKSRLKKLAEANEQARQSETRRMTPARAKKVLESLLSDPPAPPVPREDHPVSSGHRTRRKNV*
Ga0070731_1000080321	3300005538	Surface Soil	MIGRWKERLKKMADANEEARRTETRRMTSKRAKKVLESLLSDPPAPPVPREDHPVSSGHRTRRKHV*
Ga0070686_1009603841	3300005544	Switchgrass Rhizosphere	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRIMEGLLSNPPAPAQFREDHPVSSGH
Ga0070704_1001486984	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MVGRWKDRLKKMGEANEQARNTETRRLTVNRASRILEGLLSDPPAPPRLREDHPVSSGHRTRRKNV*
Ga0070704_1016957042	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTARWKDRLKKMGEANERARSTETRRLTLDRASRILEGLISDPPAPPQIKADHPVSMGHRTRRKNV*
Ga0066699_112673512	3300005561	Soil	MVGRWKERLKKMGEANEQARSTETRRLTVNRASRILEGLLSDPPGPPRIREDHPVSSGHRTRRKNV*
Ga0070702_1010955972	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	RWKERLKKMAAANEQARQTETRRMTPQRAKQVLEGLLTDPPAPPVPREEHPVSSGHRTRRKHV*
Ga0068866_113435362	3300005718	Miscanthus Rhizosphere	MVGRWKERLKKMGEANEQARTTETRRLTPNRAARIVEGLISDPPAPPRLKTDHPVSCGHRTRRKNV*
Ga0068861_1016224042	3300005719	Switchgrass Rhizosphere	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPAPAQFREDHPVSSGHRTRRKNV*
Ga0066903_1038241732	3300005764	Tropical Forest Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPRPAQFREEHPVSSGHRTRRKNV*
Ga0074479_108561251	3300005829	Sediment (Intertidal)	LGAMTGRWKERLKKMGEANERARQTETRRLTLDRAARVLEGLLSHPPAPPQPKKDHPVSSSHRTRRKHV*
Ga0074470_1001887721	3300005836	Sediment (Intertidal)	MIGRWKERLKKMAAANEQARRTETRRMTPTRAKQVLEGLLSDPPAPPVPREEHPVSSGHRTRRKHV*
Ga0066651_108382881	3300006031	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSDPPAPPRLRADHPVSCGHRTRRKNV*
Ga0066652_1002485362	3300006046	Soil	MIGRWKARLKRMAEANEEARRTETRRMTPARAKKVLEGLLSDPPAPPRLREDHPISSGHRTRRKHV*
Ga0066652_1009104861	3300006046	Soil	SSRGAERVILIAMVGRWKERLKKMGEANEQARTTETRRLTVNRASRVLEGLLSDPPAPPRIREDHPVSSGHRTRRKNV*
Ga0075428_1005468362	3300006844	Populus Rhizosphere	MMVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPAPPQIREDHPVSSGHRTRRKHV*
Ga0075425_1006109282	3300006854	Populus Rhizosphere	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPGPAQFREEHPVSSGHRTRRKNV*
Ga0073934_104391752	3300006865	Hot Spring Sediment	TAVLRRGRAVYLGIMGRWKERLERLAEANEKARESETKRMTTERAARILEGLLSHPPGEPRPREDHPVSSGHRLRRKHV*
Ga0075434_1012477822	3300006871	Populus Rhizosphere	MVGRWKERLKKMAAANEQARQTETRRMTPQRAKRVLEGLLTDPPAPPVPRDEHPVSSGHRTRRKHV*
Ga0079215_112320751	3300006894	Agricultural Soil	MVGRWKERLRKLGEANEQARNTETRRLTVNRASRILEGLLPNPPAPPQIREDHPVSSGHRTRRKHV*
Ga0079216_111107041	3300006918	Agricultural Soil	MVGRWKERLKKMGEANEQARTTETRRLTVNRASRILEGLLSDPPGPPRIREDHPISSGHRTRRKNV*
Ga0079218_130404452	3300007004	Agricultural Soil	MMVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEVLLSNPPAPPQIREDHPVSSGHRTRRKHV*
Ga0111539_100903623	3300009094	Populus Rhizosphere	MMVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRADHPVSSGHRTRRKHV*
Ga0075418_105363852	3300009100	Populus Rhizosphere	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPAPPQIREDHPVSSGHRTRRKHV*
Ga0066709_1033932591	3300009137	Grasslands Soil	TQRLRKMGEANERARETETRRLTLTRAARILEGLLSNPPAPPQPKKDHPVSSSHRTRRKNV*
Ga0105091_101102832	3300009146	Freshwater Sediment	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPAPPQIRTDHPVSSGHRTRRKHV*
Ga0105248_125347702	3300009177	Switchgrass Rhizosphere	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRIMEGLLSNPPAPAQFRPDHPVSSGHRTRRKNV*
Ga0134062_101633453	3300010337	Grasslands Soil	LGEANEQARTTETRRLTVNRASRILEGLLSDPPAPPRLREDHPTSSGHRTRRKNV*
Ga0126376_110276301	3300010359	Tropical Forest Soil	MVGRWKERLKKMGEANEQARQTETRRLTHHRAARIVEGLLSDPPAPPRHKDDHPVSSGHRTRRKNV*
Ga0134124_122760462	3300010397	Terrestrial Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRIMEGLLSNPPAPAQFRQDHPVSSGHRTRRKNV*
Ga0126383_117258492	3300010398	Tropical Forest Soil	MTMVGRWKERLKKLGEANERARSGETRRLTMNRASRILEGLLSNPPGPAQFRDDHPISSGHRTRRKNV*
Ga0134127_100224403	3300010399	Terrestrial Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRILEGLLSNPPAPAQFREDHPVSSGHRTRRKNV*
Ga0134127_114727522	3300010399	Terrestrial Soil	MVGRWKERLKKLGEANEAARSTETRRLTVNRASRIMEGLLSNPPAPAQFRQDHPVSSGHRTRRKNV*
Ga0134122_100087047	3300010400	Terrestrial Soil	MVGRWKERLKKMGEANEQARSTETRRLTVNRASRILEGLLSDPPAQPRLREDHPVSSGHRTRRKNV*
Ga0134122_100857454	3300010400	Terrestrial Soil	MVGRWKERLKKLGEANEQARSTETRRLTVNRASRIMEGLLSNPPAPAQFREDHPVSSGHRTRRKNV*
Ga0134122_100989631	3300010400	Terrestrial Soil	MIGRWKAKLKKMAEANEKARQVETRRMTPSRAKKVLESLLSDPPAPPVPKEDHPVSSGHRTRRKHV*
Ga0134122_103073062	3300010400	Terrestrial Soil	MVGRWKERLKKLGEANEQARSTETRRLTVNRASRILEGLLSDPPAPPQIRADHPVSSGHRTRRKHV*
Ga0134121_104279933	3300010401	Terrestrial Soil	MVGRWKERLKKMGEANEQARSTETRRLTVNRASRILEGLLSDPPAQPRLREDHPVSSGHRTRRKNV
Ga0134121_109341731	3300010401	Terrestrial Soil	GDILIAMVGRWKERLKKLGEANEQARNTETRRLTVNRASRIMEGLLSNPPAPAQFRQDHPVSSGHRTRRKNV*
Ga0134121_122638431	3300010401	Terrestrial Soil	DSAGRKSILRVMIGRWKERLKKLGAANEQARQSETRRMTPTRAKQVLEGLLTDPPAPPVPRDEHPVSSGRRTRRKHV*
Ga0134121_132753282	3300010401	Terrestrial Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRIMEGLLSNPPGPAQFREEHPVSSGHRTRRKNV*
Ga0137443_10925402	3300011433	Soil	MAGHWKDRLKKMGEANEQARDTATRRLTLNRASRILEGLISDPPAPPQIRQDHPVSCGHRTRRKHV*
Ga0137429_11750492	3300011437	Soil	MVGRWKERLKKLGEANEKARNTETRRLTVNRASRILEGLLSNPPAPPQIREDHPVSSGHRTRRKHV*
Ga0137457_13289991	3300011443	Soil	KERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRADHPVSSGHRTRRKHV*
Ga0137431_10487992	3300012038	Soil	MVGRWKERLRKLGEANEKARSTETRRLTVNRASRILEGLLSNPPGPAQFREDHPVSSGHRTRRKNV*
Ga0137319_11094492	3300012167	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRTDHPVSSGHRTRRKHV*
Ga0150985_1184540112	3300012212	Avena Fatua Rhizosphere	MIGRWKERLKKMAAANEQARQTETRRMTPQRAKQVLEGLLTDPPAPPVPREEHPVSSGHRTRR*
Ga0150984_1057620622	3300012469	Avena Fatua Rhizosphere	MIGRWKERLKKMAAANEQASQTETRRMTPQRAKQVLEGLLTDPPAPPVPREEHPVSSGHRTRRKHV*
Ga0137410_100013355	3300012944	Vadose Zone Soil	VIGRWKARLKRMADANEEARRTETRRLTPQRARKVLEGLLSDPPAPPVPREEHPVSSGHRTRRKHV*
Ga0168316_1406871	3300012981	Weathered Mine Tailings	MVGRWKERLKRLGEANEQARQTETRRLTPNRGKRILEGLLSDPPAPPQHRDDHPVSSGHRTRRKNV*
Ga0190266_104606412	3300017965	Soil	MTMVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRPDHPVSSGHRTRRKHV
Ga0066669_105484002	3300018482	Grasslands Soil	MVGRWKERLKKMGEANEQARTTETRRLTLNRASRVLEGLLSDPPAPPRIREDHPVSSGHRTRRKNV
Ga0187894_104477691	3300019360	Microbial Mat On Rocks	MVGRWKERLKKLGEANEKARTTETRRLTVNRASRILEGLLSNPPGPAQFREEHPVSSGHRTRRKNV
Ga0196964_101607102	3300020202	Soil	MVGRWKDRLKKLGEANEQARTTETRRLTVNRTRQVVEGLLSNPPAPPQFRADHPVSCGHITRRKHV
Ga0207646_101626852	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVGRWKDRLKKMGEANEQARNTETRRLTVNRASRILEGLLSDPPAPPRLREDHPVSSGHRTRRKNV
Ga0207670_103149642	3300025936	Switchgrass Rhizosphere	MVGRWKERLKKLGEANEQARSTETRRLTVNRASRIMEGLLSNPPAPAQFREDHPVSSGHRTRRKNV
Ga0207708_111953641	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	LLFPAAEGDIIIAMVGRWKERLKKLGEANEQARTTETRRLTVNRASRILEGLLSNPPAPAQFREDHPVSSGHRTRRKNV
Ga0209166_100223863	3300027857	Surface Soil	MIGRWKSRLKKLAEANEQARQSETRRMTPARAKKVLESLLSDPPAPPVPREDHPVSSGHRTRRKNV
Ga0209579_1000148012	3300027869	Surface Soil	MIGRWKERLKKMADANEEARRTETRRMTSKRAKKVLESLLSDPPAPPVPREDHPVSSGHRTRRKHV
Ga0209486_105587342	3300027886	Agricultural Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRILEGLLSNPPGPAQFREDHPVSSGHRTRRKNV
Ga0207428_100626392	3300027907	Populus Rhizosphere	MMVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRADHPVSSGHRTRRKHV
Ga0209168_104357492	3300027986	Surface Soil	MIGRWKERLKKMAVANEEARRTETRRMTPKRAKEVLEGLLSDPPAPPVPKEDHPVSSGHRTRRKNVKP
Ga0222749_106688912	3300029636	Soil	ERLQRMGEANERARQTETRRLTLNRAARILEGLLSNPPAPPQPRKDHPVSSGHRTRRKNV
Ga0247727_103016062	3300031576	Biofilm	MSGRWKERLRKIGEANQQARTSETRRLTLNRASRILEGLLSDPPAPPQPRKDHPVSSGHHRTRRKHV
Ga0310813_1000021223	3300031716	Soil	MVGRWKERLKKMGEANEQARTTETRRLTPNRAARIVEGLISDPPAPPRLKTDHPVSCGHRTRRKNV
Ga0310813_101226992	3300031716	Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASKIMEGLLSNPPAPARFREDHPVSSGHRTRRKNV
Ga0310813_104348082	3300031716	Soil	MGEANERARNTETRRLTVNRASRILEGLLSDPPAPPRLREDHPVSSGHRTRRKNV
Ga0310813_105707352	3300031716	Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRILEGLLSNPPAPAQFREDHPVSSGHRTRRKHV
Ga0310813_106399772	3300031716	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPAPAQFRQDHPVSSGHRTRRKNV
Ga0310813_110142172	3300031716	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRIMEGLLSNPPAPAQFRQDHPVSSGHRTRRKNV
Ga0307474_109172002	3300031718	Hardwood Forest Soil	MIGRWKARLQKMADANEQARKTETRRMTPARAKRVLESLLSDPPAPPRPREDHPVSSAHRTRRKHV
Ga0307475_100469753	3300031754	Hardwood Forest Soil	MIGRWKARLKSMADANERARQTETRRMTPARAKRVLESLLSDPPAPPLPREDHPVSSGHRTRRKNV
Ga0310904_105327592	3300031854	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRADHPVSSGHRTRRKHV
Ga0310900_114457442	3300031908	Soil	LTMVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIRADHPVSSGHRTRRKHV
Ga0306921_102435542	3300031912	Soil	MIGRWKDRLKKMAVANEEARRTETRRMTPKRAKEVLEGLLSDPPAPPVPKEDHPLSSGHRTRRKNVKP
Ga0307479_103694033	3300031962	Hardwood Forest Soil	MIGRWKSRLKKMAEANEQARQTETRRMTPARAKKVLESLLSDPPAPPLLREDHPVSSGHRTRRKNV
Ga0306922_110330472	3300032001	Soil	MIGRWKDRLKKMAVANEEARRTETRRMTPKRAKEVLEGLLSDPPAPPVPKEDHPVSSGHRTRRKNVKP
Ga0306922_115181062	3300032001	Soil	MIGRWKARLKKMADANEEARQTETRRMTAKRAKQVLESLLSDPPAPPVPREDHPVSSGHRTRRKHVKP
Ga0307411_113330452	3300032005	Rhizosphere	GPEGDILIAMVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPAPAQFREDHPVSSGHRTRRKHV
Ga0315281_100650853	3300032163	Sediment	MAGHWKDRLKKMGEANEQARDTATRRLTLNRASRILEGLISDPPAPPQIRQDHPVSCGHRTRRKHV
Ga0310889_104175012	3300032179	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRIIEGLLSNPPAPPQIREDHPVSSGHRTRRKHV
Ga0307471_1006994981	3300032180	Hardwood Forest Soil	MVGRWKERLKKLGEANEQARSAETRRLTLNRASKVMEGLLSEPAAPPVLKEDHPVSSGHRTRRKHV
Ga0307471_1009649132	3300032180	Hardwood Forest Soil	MVGRWKERLKKLGEANEQARTTETRRLTVNRASRIMEGLLSNPPAPAQFREDHPVSSGHRTRRKNV
Ga0307471_1032871162	3300032180	Hardwood Forest Soil	RSSLSCWRRNEGHEGVASAARRSILKSMIGRWKSRLKKMAEANEQARQTETRRMTPARAKKVLESLLSDPPAPPLLREDHPVSSGHRTRRKNV
Ga0307472_1008674212	3300032205	Hardwood Forest Soil	MVGRWKERLKKLGEANETARQTETRRLTLNRGIRILEGLLSDPPAPPQVRPDHPVSSGHRTRRKNV
Ga0306920_1012273831	3300032261	Soil	ILIAMVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPGPAQFREEHPISSGHRTRRKNV
Ga0310812_100200981	3300032421	Soil	VGRWKERLKKLGEANEQARSTETRRLTVNRASRIMEGLLSNPPAPAQFREDHPVSSGHRTRRKNV
Ga0310914_115360321	3300033289	Soil	MVGRWKERLKKLGEANEQARNTETRRLTVNRASRILEGLLSNPPGPAQFREEHPVSSGHRTRRKNV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100619

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences