Metagenome / Metatranscriptome Family F100611

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F100611
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	73 residues
Representative Sequence	MEAVRCKQCGETRWSLFPGSLAHALEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSSRLAAR
Number of Associated Samples	67
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.27 %
% of genes near scaffold ends (potentially truncated)	24.51 %
% of genes from short scaffolds (< 2000 bps)	72.55 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (87.255 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.941 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.00% β-sheet: 14.00% Coil/Unstructured: 65.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00293	NUDIX	37.25
PF13302	Acetyltransf_3	27.45
PF02594	DUF167	9.80
PF01638	HxlR	5.88
PF04542	Sigma70_r2	4.90
PF01323	DSBA	3.92
PF02776	TPP_enzyme_N	1.96
PF08281	Sigma70_r4_2	1.96
PF00639	Rotamase	0.98
PF13624	SurA_N_3	0.98
PF01904	DUF72	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1872	Uncharacterized conserved protein YggU, UPF0235/DUF167 family	Function unknown [S]	9.80
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	5.88
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	4.90
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	4.90
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	4.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	4.90
COG0760	Peptidyl-prolyl isomerase, parvulin family	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.25 %
Unclassified	root	N/A	12.75 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.71 %
Unclassified	root	N/A	12.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64.71 %
Unclassified	root	N/A	12.75 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Name	Rank	Taxonomy	Distribution
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	40.20 %
Unclassified	root	N/A	12.75 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	40.20 %
Unclassified	root	N/A	12.75 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.96 %
Syntrophobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales	0.98 %

Name	Rank	Taxonomy	Distribution
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	28.43 %
Unclassified	root	N/A	12.75 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Syntrophaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	28.43 %
Unclassified	root	N/A	12.75 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
unclassified Syntrophaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	12.75 %
Unclassified	root	N/A	12.75 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.92 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1.96 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Syntrophaceae bacterium PtaB.Bin038	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.75 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	9.80 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	3.92 %
Solirubrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	2.94 %
Solirubrobacter pauli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	1.96 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	1.96 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Syntrophaceae bacterium PtaB.Bin038	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_108916119	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300005327\|Ga0070658_10533760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1015	Open in IMG/M
3300005334\|Ga0068869_100319920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1258	Open in IMG/M
3300005981\|Ga0081538_10001846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	21363	Open in IMG/M
3300005981\|Ga0081538_10036630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3198	Open in IMG/M
3300005985\|Ga0081539_10119467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1312	Open in IMG/M
3300006844\|Ga0075428_101161562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	814	Open in IMG/M
3300006876\|Ga0079217_11113630	Not Available	591	Open in IMG/M
3300006894\|Ga0079215_10668351	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300006918\|Ga0079216_11673598	Not Available	541	Open in IMG/M
3300007790\|Ga0105679_10308283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	1013	Open in IMG/M
3300009098\|Ga0105245_10801526	Not Available	980	Open in IMG/M
3300009156\|Ga0111538_12592664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	636	Open in IMG/M
3300009162\|Ga0075423_12638670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	549	Open in IMG/M
3300009789\|Ga0126307_10010613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	6691	Open in IMG/M
3300009789\|Ga0126307_10011584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	6442	Open in IMG/M
3300009789\|Ga0126307_10018251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	5253	Open in IMG/M
3300009789\|Ga0126307_10033430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	3968	Open in IMG/M
3300009789\|Ga0126307_10157717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1818	Open in IMG/M
3300009789\|Ga0126307_10516055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	965	Open in IMG/M
3300009789\|Ga0126307_10698353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	818	Open in IMG/M
3300009840\|Ga0126313_10003426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	9141	Open in IMG/M
3300009840\|Ga0126313_10135115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1849	Open in IMG/M
3300009840\|Ga0126313_10475116	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300009840\|Ga0126313_10538272	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300009840\|Ga0126313_11079859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	659	Open in IMG/M
3300010036\|Ga0126305_10043709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2511	Open in IMG/M
3300010036\|Ga0126305_10783947	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300010037\|Ga0126304_10041234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2769	Open in IMG/M
3300010037\|Ga0126304_11156227	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → unclassified Syntrophaceae → Syntrophaceae bacterium PtaB.Bin038	530	Open in IMG/M
3300010038\|Ga0126315_10041807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2446	Open in IMG/M
3300010038\|Ga0126315_10321350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	959	Open in IMG/M
3300010040\|Ga0126308_10028946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	3074	Open in IMG/M
3300010040\|Ga0126308_10311836	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300010040\|Ga0126308_10627066	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010041\|Ga0126312_10018596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	4639	Open in IMG/M
3300010041\|Ga0126312_10574908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	809	Open in IMG/M
3300010041\|Ga0126312_11003074	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300010042\|Ga0126314_10073062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2284	Open in IMG/M
3300010042\|Ga0126314_10269428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1211	Open in IMG/M
3300010042\|Ga0126314_10327880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1095	Open in IMG/M
3300010042\|Ga0126314_10952665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	636	Open in IMG/M
3300010042\|Ga0126314_11352738	Not Available	534	Open in IMG/M
3300010044\|Ga0126310_10063047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2111	Open in IMG/M
3300010044\|Ga0126310_10118270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1638	Open in IMG/M
3300010045\|Ga0126311_10898692	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300010045\|Ga0126311_10906043	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300010166\|Ga0126306_10000638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	16916	Open in IMG/M
3300011119\|Ga0105246_10428797	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300012042\|Ga0136627_1002806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6903	Open in IMG/M
3300012045\|Ga0136623_10187288	All Organisms → cellular organisms → Bacteria	890	Open in IMG/M
3300012529\|Ga0136630_1250283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	633	Open in IMG/M
3300012678\|Ga0136615_10028792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2859	Open in IMG/M
3300012679\|Ga0136616_10561202	Not Available	519	Open in IMG/M
3300017787\|Ga0183260_10216786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1334	Open in IMG/M
3300017789\|Ga0136617_11095492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	602	Open in IMG/M
3300017792\|Ga0163161_11592399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	576	Open in IMG/M
3300017965\|Ga0190266_10825964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	598	Open in IMG/M
3300018072\|Ga0184635_10041765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1754	Open in IMG/M
3300018075\|Ga0184632_10456369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300018422\|Ga0190265_10005610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	8885	Open in IMG/M
3300018422\|Ga0190265_10203137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1994	Open in IMG/M
3300018422\|Ga0190265_10436682	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300018422\|Ga0190265_10659777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1167	Open in IMG/M
3300018422\|Ga0190265_11506409	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300018429\|Ga0190272_10178424	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300018432\|Ga0190275_10036311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	4003	Open in IMG/M
3300018432\|Ga0190275_10173393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2013	Open in IMG/M
3300018469\|Ga0190270_10179920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1760	Open in IMG/M
3300018469\|Ga0190270_10375352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1305	Open in IMG/M
3300018469\|Ga0190270_10378339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	1300	Open in IMG/M
3300018481\|Ga0190271_10158007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	2200	Open in IMG/M
3300018481\|Ga0190271_12224266	Not Available	654	Open in IMG/M
3300018920\|Ga0190273_12205562	Not Available	518	Open in IMG/M
3300019279\|Ga0184642_1462423	Not Available	500	Open in IMG/M
3300019377\|Ga0190264_11149134	Not Available	639	Open in IMG/M
3300019767\|Ga0190267_10159210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1000	Open in IMG/M
3300019767\|Ga0190267_10429003	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300019889\|Ga0193743_1207158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	616	Open in IMG/M
3300021976\|Ga0193742_1004018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	8272	Open in IMG/M
3300025920\|Ga0207649_10859606	All Organisms → cellular organisms → Bacteria → Proteobacteria	710	Open in IMG/M
3300025932\|Ga0207690_10652512	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300026041\|Ga0207639_11041497	Not Available	767	Open in IMG/M
3300028587\|Ga0247828_10702273	Not Available	630	Open in IMG/M
3300028592\|Ga0247822_11392881	Not Available	590	Open in IMG/M
3300028755\|Ga0307316_10255517	Not Available	637	Open in IMG/M
3300028812\|Ga0247825_11205973	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300028814\|Ga0307302_10140482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1167	Open in IMG/M
3300028878\|Ga0307278_10026023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2687	Open in IMG/M
3300028889\|Ga0247827_10454323	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300030006\|Ga0299907_11004975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	613	Open in IMG/M
3300030336\|Ga0247826_10383019	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300031229\|Ga0299913_10026493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5426	Open in IMG/M
3300031450\|Ga0272433_10022495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5739	Open in IMG/M
3300031548\|Ga0307408_100087173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2348	Open in IMG/M
3300031731\|Ga0307405_10023339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	3515	Open in IMG/M
3300031824\|Ga0307413_10618885	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300031824\|Ga0307413_10662866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	862	Open in IMG/M
3300032002\|Ga0307416_100023051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter pauli	4509	Open in IMG/M
3300032080\|Ga0326721_10628104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300032080\|Ga0326721_10865470	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300032126\|Ga0307415_101904359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.39%
Host-Associated	Host-Associated	19.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.59%
Plants	Host-Associated → Plants	19.61%
Aquatic	Environmental → Aquatic	9.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.73%
Freshwater	Environmental → Aquatic → Freshwater	7.84%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Sediment	Environmental → Aquatic → Sediment	1.96%
Roots	Host-Associated → Plants → Roots	1.96%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Ice	Environmental → Aquatic → Freshwater → Ice	6.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	58.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	6.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.98%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.49%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	6.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.98%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012042	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ489 (22.06)	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012679	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ299 (21.06)	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019889	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2	Environmental	Open in IMG/M
3300021976	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c1	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031450	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1089161191	3300000956	Soil	MEAVRCTQCGETRWSLFPGSLSHSLEAPCELCGGETVIERRRPGAGPDHLDVERRRAAI
Ga0070658_105337602	3300005327	Corn Rhizosphere	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPPLGVERRRREMSDRIAGGAGEPHGLAAR*
Ga0068869_1003199202	3300005334	Miscanthus Rhizosphere	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPQLGVERRRREMADRIAGEPHGLAAR*
Ga0081538_1000184622	3300005981	Tabebuia Heterophylla Rhizosphere	MEAVRCTQCGETRWSLFPGSLAHALEAPCELCGGETVIERRRPGAGPEELDVERRRAAIADRIGADQSLAAR*
Ga0081538_100366302	3300005981	Tabebuia Heterophylla Rhizosphere	MEAVRCTQCGETRWSLLPGSLMHALESPCELCGGETVIERRRPGAGPARLDVERRRAAIAGRISGVESSELAAR*
Ga0081539_101194672	3300005985	Tabebuia Heterophylla Rhizosphere	MEAVRCTRCGETRWSLLPDALAHLLAAPCELCGGETMVERRRPGAGHGPVDVERRRMAIAVRIAGEQPDSSEIALR*
Ga0075428_1011615622	3300006844	Populus Rhizosphere	MEAVRCTQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPENLGVERRRAEIADRIAGGEALSGHGLATR*
Ga0079217_111136301	3300006876	Agricultural Soil	MEAVRCKQCGETRWSLFPGSLAHALEAPCELCGGETVLERRRPGAGPDELDVERRRAAIADRIAGAERAPTQG
Ga0079215_106683511	3300006894	Agricultural Soil	QCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGSGPEQLDVERRRAEIADRIAGGDALSGRGLAAR*
Ga0079216_116735981	3300006918	Agricultural Soil	LFPGSLAHSLEAPCELCGGETVIERRRPGAGPEQLDVERRRAEIADRIAGGEALSGRGLAAR*
Ga0105679_103082832	3300007790	Soil	MQAVRCIECGETRWSLFPGTLAQSLGTPCELCGGEMVIERRRPGAGPRRLVVERRRTATVGRIGAKSSSELLLR*
Ga0105245_108015262	3300009098	Miscanthus Rhizosphere	MEAVRCTECGETRWSLIPGSLEHALEAPCEICGGETVVERRRPGAGPPQLGVERRRREMADRIAGEPHGLAAR*
Ga0111538_125926641	3300009156	Populus Rhizosphere	MEAVRCTECGETRWSLFPHSLAQSLHAPCELCGGEMVIERRRPGAGPQRLVVERRRAETVSRIGGRSSSELLVR*
Ga0075423_126386701	3300009162	Populus Rhizosphere	MEAVRCKECGETRWSLFPGSLERALEAPCEICGGETVVERRRPGAGPPQLGVERRRREMADRIAGEPHGLAAR*
Ga0126307_100106134	3300009789	Serpentine Soil	MEAVRCAQCGETRWSLFPGSLAHALEAPCELCGGETVIERRRPGAGPDQLDVERRRAAFADRIAGDQPVGARGLAAR*
Ga0126307_100115844	3300009789	Serpentine Soil	MEAVRCTQCGETRWSLFPGTLARALEAPCELCGGETVIERRRPGAGPVELDVERRRAAIADRIAGLDSTLTAR*
Ga0126307_100182514	3300009789	Serpentine Soil	MEAVRCTECGETRWSLFSGSLERALDAPCEICGGETVVERRRPGAGPSQLGVERRRRAMADRIAGGAGEPHGLAAR*
Ga0126307_100334307	3300009789	Serpentine Soil	MEAVRCTQCGETRWSLLPGSLTRALEAPCELCGGETVVERRRPGAGPETLDVERRRAAIAGRIAGTGSNELAAH*
Ga0126307_101577173	3300009789	Serpentine Soil	MEAVRCKQCGETRWSLFPGSFAHSLEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSRLATR*
Ga0126307_105160552	3300009789	Serpentine Soil	MEAVRCTQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPDHLEVERRRAAIAGRMGDSSRLAAR*
Ga0126307_106983532	3300009789	Serpentine Soil	MEAVRCKQCGETRWSLFPGSLAHALEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSSRLAAR*
Ga0126313_100034262	3300009840	Serpentine Soil	MEAVRCTRCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPEQLDVERRRAAIVDRVAGGDGPRRLAAR*
Ga0126313_101351152	3300009840	Serpentine Soil	MEAVRCKQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSRLATR*
Ga0126313_104751163	3300009840	Serpentine Soil	MEAVRCTHCGETRWSLLPGTLTRALDAPCELCGGETVVERRRPGAGPETLDVERRRAAIADRIAGAESNELAAR*
Ga0126313_105382721	3300009840	Serpentine Soil	MEAVRCTQCGETRWSLFPGSLAHSLAAPCELCGGETVMERRRPGSGPPRLDVERRRSAIADRLAAVDSDSTLTAH*
Ga0126313_110798591	3300009840	Serpentine Soil	REAVRCTECGGTRWSIMAGSLAHLLEEPCELCGGERVIERRRPGAGPDELDIERRRAEIADRIAGRHGDAHLSAR*
Ga0126305_100437093	3300010036	Serpentine Soil	MEAVRCKQCGETRWSLFPGSLAHALEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSSRLATR*
Ga0126305_107839471	3300010036	Serpentine Soil	MEAVRCTQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPDHLEVERRRAAIAGL
Ga0126304_100412343	3300010037	Serpentine Soil	MEAVRCKQCGETRWSLFPGSLAYALEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSSRLAAR*
Ga0126304_111562272	3300010037	Serpentine Soil	MEAVRCKQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSSRL
Ga0126315_100418074	3300010038	Serpentine Soil	MEAVRCKQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSSRLATR*
Ga0126315_103213502	3300010038	Serpentine Soil	MEAVRCTQCGETRWSLLPGTLTHALDAPCELCGGETVIERRRPGAGPETLDVERRRAAMVDRMAGTGSNELAAR*
Ga0126308_100289464	3300010040	Serpentine Soil	MEAVRCKQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPDRLDAERRRAAIADCIAGSSRLATR*
Ga0126308_103118363	3300010040	Serpentine Soil	MDAVRCTHCGETRWSLLPGTLTRSLDAPCELCGGETVVERRRPGAGPETLDVERRRAAIAGHHDAV
Ga0126308_106270662	3300010040	Serpentine Soil	MEAVRCTECGETRWSLFSGSLERALDAPCEICGGETVVERRRRAMADRIAGGAGEPHGRAAR*
Ga0126312_100185965	3300010041	Serpentine Soil	MEAVRCTRCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPEQLDVERRRAAIVDRLAGGDGPRRLAAR*
Ga0126312_105749081	3300010041	Serpentine Soil	MEAVRCTECGETRWSLFPGSLNQSLRTPCDLCGGEMVIERRRPGAGPHRLVVERRRAVTVSRSGGRSSSELLVR*
Ga0126312_110030742	3300010041	Serpentine Soil	MEAVRCTECGETRWSLFSGSLERALDAPCEICGGETVVERRRPGAGPSQLRVERRRRAMADRIAGGAGEPHGLAAR*
Ga0126314_100730624	3300010042	Serpentine Soil	MEAVRCTQCGETRWSLFPGSLAHALEAPCELCGGETVIERRRPGAGPDQLDVERRRAAFADRIAGDQPVGARGLAAR*
Ga0126314_102694281	3300010042	Serpentine Soil	RKPRQGSWSVMEAVRCMQCGETRWSLFPGTLARALEAPCELCGGETVIERRRPGAGPVELDVERRRAAIADRIAGLDSTLTAR*
Ga0126314_103278803	3300010042	Serpentine Soil	MEAVRCTRCGETRWSLFPGSLARSLEAPCELCGGETVIERRRPGAGPVELSVERRRAAVADRIAGLDSRLTTR*
Ga0126314_109526651	3300010042	Serpentine Soil	TGVKQWADPLEGAGQPMEAVRCTECGETRWSLFSGSLERALDAPCEICGGETVVERRRPGAGPSQLGVERRRRAMADRIAGGAGEPHGLAAR*
Ga0126314_113527382	3300010042	Serpentine Soil	MQCGETRWSLFPGTLAHALAAPCELCGGETVIERRRPGAGPVELDVERRRAGIADRIAGLDSRLTAR*
Ga0126310_100630473	3300010044	Serpentine Soil	MEAVRCTECGETRWSLFSGSLERALDAPCEICGGETVVERRRPGAGPSELRVERRRRAMADRIAGGAGEPHGLAAR*
Ga0126310_101182704	3300010044	Serpentine Soil	MEAVRCTQCGETRWSLLPGSLTRALEAPCELCGGETVVERRRPGFGPEQLDVERRRAAIADRIAGV
Ga0126311_108986922	3300010045	Serpentine Soil	MEAVRCTRCGETRWSLFPGSLARSLEAPCELCGGETVIERRRPGAGPVELSVERRRAAVADRIAGLDSRL
Ga0126311_109060431	3300010045	Serpentine Soil	MEAVRCTRCGETRWSLFPGSLAHSLEAPSELCGGETVIERRRPGAGPEQLEVERRRAAIADRLAGAD
Ga0126306_1000063818	3300010166	Serpentine Soil	MEAVRCTRCGDTRWSLFPGSLAHSLEAPCELCGGETVIERRRPGSGPEELDVERRRAAIADRIVGGDASRLAAR*
Ga0105246_104287973	3300011119	Miscanthus Rhizosphere	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPQLGVERRRREMADRIAGGAGEPHGLAAR*
Ga0136627_10028064	3300012042	Polar Desert Sand	MEAVRCTQCGETRWSLFPGSLLHGLEAPCELCGGETVVERRRPGAGPRRLDVERRRTTVAGHSSGLATR*
Ga0136623_101872882	3300012045	Polar Desert Sand	MEAVRCIQCGETRWSLFPGSLAHSLEAPCELCGGDLVVERRRPGAGPDELSVERRRAAIADRIAGVDSGLAAR*
Ga0136630_12502832	3300012529	Polar Desert Sand	CGETRWSLFPGSLAHSLGAPCELCGGDLVVERRRPGAGPDELSVERRRAAIADRIAGVDSGLAAR*
Ga0136615_100287924	3300012678	Polar Desert Sand	MEAVRCLECGETRWSLFPGSLSHALDAPCELCGGETVIERRRPGAGPDALDVERRRAALLDRIGGHDRLAAR*
Ga0136616_105612021	3300012679	Polar Desert Sand	MEAVRCIQCGETRWSLFPGSLAHSLEAPCELCGGDLVVERRRPGAGPDELSVERRRAAIADRI
Ga0183260_102167862	3300017787	Polar Desert Sand	MEAVRCIQCGETRWSLFPGSLAHSLEAPCELCGGDLVVERRRPGAGPDELSVERRRAAIADRIAGVDSGLAAR
Ga0136617_110954922	3300017789	Polar Desert Sand	TQCGETRWSLLPGVQAHALEAACEVCGGETVIERRRPGAGPEHLDVERRRAAMADRIAGAELESGELAAS
Ga0163161_115923992	3300017792	Switchgrass Rhizosphere	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERGRPGAGPPQLGVERRRREMSDRIAGGAGEPHGLAAR
Ga0190266_108259641	3300017965	Soil	MEAVRCTECGETRWSLFPGSLAHSLDGPCELCGGETVIERRRPGAGPEQLDVERRRAAIADRIAAIGSGSRLATR
Ga0184635_100417654	3300018072	Groundwater Sediment	MEAVRCTQCGETRWSLIPGSLTHALEAPCELCGGETVIERRRPGAGPETLDVERRRAAIADRIAGLDAVESNELAAR
Ga0184632_104563691	3300018075	Groundwater Sediment	MEAVRCTQCGETRWSLFPGSLSHALDAPCELCGGETVIERRRPGAGPDHLDVERRRAAIADRIAGIDIDVPTLTAH
Ga0190265_100056107	3300018422	Soil	MEAVRCRQCGETRWSLLPDALVHLLAEPCELCGGETVVERRRPGAGPQSLDVERRRAGIAARIAGGSTELAAR
Ga0190265_102031372	3300018422	Soil	MEAVRCTRCGETRWSLMPDALTHLLAAPCELCGAETTIERRRPGAGHGPVDVERRRLAIAARIAGELPDSSEVATR
Ga0190265_104366824	3300018422	Soil	MEAVRCTQCGETRWSLLQGSLASALEGPCELCGGETMVERRRPGQGPERLDVERRRAAIADRIAGRRDFVAR
Ga0190265_106597772	3300018422	Soil	MDAVRCTQCGGTRWSLLPGSLMHLLAEPCDLCGGVQVVERRRPGAGPETLDLERRRAAMADRIAGRAADDRLTAR
Ga0190265_115064092	3300018422	Soil	MEAVRCTQCGETRWSLFPGSLAHALEAPCELCGGETVLERRRPGAGPDELDVERRRAAIADRIAGAESASTSGLAAR
Ga0190272_101784241	3300018429	Soil	MEAVRCTQCGETRWSLLQGSLASALEGPCELCGGETMIERRRPGQGPERLDVERRRAAIADRIAGRRDFVAR
Ga0190275_100363116	3300018432	Soil	MDAVRCKQCGETRWSLVPGSQENALRAPCALCGGETMIERRRPGAGPVRLDVERRRAAIAERIAGVDASSLSAR
Ga0190275_101733934	3300018432	Soil	MEAVRCTQCGETRWSLFPGSLAHSLDGPCELCGGETVIERRRPGAGPDQLDVERRRAAIADRIALGSDSSSRLSTH
Ga0190270_101799203	3300018469	Soil	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPQLGVERRRREMSDRIAGGAGEPHGLAAR
Ga0190270_103753521	3300018469	Soil	MEAVRCTQCGETRWSLLPGSLTHSLDAPCELCGGETVIERRRPGAGPETLDVERRRAAIAGRIAGFDATGSNELAAR
Ga0190270_103783394	3300018469	Soil	MEAVRCIECGETRWSLFPGSLAHSLDGPCELCGGETVIERRRPGAGPEQLDVERRKAAIADRIAAIGSGSRLATR
Ga0190271_101580072	3300018481	Soil	MEAVRCTECGETRWSLFPGTRARALEAPCELCGGPMVVERRRPGSHPGQLPVERRRAELADRLGAHSHTHAR
Ga0190271_122242662	3300018481	Soil	MEAVRCTQCGETRWSLLPGSLTHTLDAPCELCGGETVIERRRPGAGPETLDVERRRAAIAGRIAGFDATGSNELAA
Ga0190273_122055621	3300018920	Soil	MEAVRCTQCGETRWSLFPGSLAAALAAPCELCGGETAFERRRPGAGPRRLNRERRREAIAERIAGGDAPTLTAR
Ga0184642_14624232	3300019279	Groundwater Sediment	MEAVRCTECGETRWSLFPGSFAHSLEEPCELCGGEMVIERRRPGAGPDHLMVERRRAAIVEHIGAGVGSAEHLGAY
Ga0190264_111491342	3300019377	Soil	MEAVRCTECGETRWSLLPGSLEHALEAPCENCGGETMVERRRPGAGPERLDVERRRKIMADRIAGPGGAGRA
Ga0190267_101592102	3300019767	Soil	MEAVRCTQCGETRWSLFPASLAAALAAPCELCGGETALERRRPGAGPRRLDRERRRVALADRMAGGDAPTLTAR
Ga0190267_104290031	3300019767	Soil	MEAVRCTQCGETRWSLFPGSLSHSLDAPCELCGGETVIERRRPGAGPDHLDVERRRAAIADRIAGIDADVSTLSAR
Ga0193743_12071582	3300019889	Soil	MEAVRCTQCGETRWSLLPGSRSHALDAPCELCGGKTVVERRRPGAGPETLDVERRRAAIADRIGGRDAVKSSGLAAR
Ga0193742_10040185	3300021976	Soil	MEAVRCTQCGETRWSLLPGSRSHALDAPCELCGGKTVVERRRPGAGPETLDVERRRTAIADRIAGRDAVKSSGLAAR
Ga0207649_108596062	3300025920	Corn Rhizosphere	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPPLGVERRRREMSDRIAGGAGEPHGLAAR
Ga0207690_106525121	3300025932	Corn Rhizosphere	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPQLGVERRRREMADRIAGEPHGLAAR
Ga0207639_110414972	3300026041	Corn Rhizosphere	RWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPPLGVERRRREMSDRIAGGAGEPHGLAAR
Ga0247828_107022731	3300028587	Soil	MEAVRCTQCGETRWSLLPGSLMHALEAPCEICGGETVVERRRPGAGPDILDVERRRAAIADRLAFE
Ga0247822_113928812	3300028592	Soil	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVLERRRPGAGPPPLGVERRRREMSDRIAGGAGEPHGLAAR
Ga0307316_102555172	3300028755	Soil	ETRWSLFAGSFSHALSEPCELCGGETVLERRRPGAGPKRLIVERRRAAILDRIGTGGGGRELNAR
Ga0247825_112059731	3300028812	Soil	MEAVRCTQCGETRWSLFPGSLAHSLAAPCEICGGETMIERRRPGFGPEKLDVERRRAAIADRIASLDGESRLTAR
Ga0307302_101404822	3300028814	Soil	MEAVRCTQCGETRWSLIPGSLTHALEAPCELCGGETVIERRRAAIADRIAGLDAVESNELAAR
Ga0307278_100260232	3300028878	Soil	MEAVRCTQCGETRWSLLPGSLTHALEAPCEVCGGETVIERRRPGAGPETLDVERRRAAIADRIAGLDANELAAR
Ga0247827_104543232	3300028889	Soil	MEAVRCTECGETRWSLFPGSLEHALEAPCEICGGETVVERRRPGAGPPPLDAQRRRREMSDRIAGGAGEPHGLAAR
Ga0299907_110049751	3300030006	Soil	SWSNMEAVRCTQCGETRWSLFPGSLAHALEAPCELCGGETVLERRRPGAGPDELDVERRRAAIADRIAGAEPASSRGLATH
Ga0247826_103830191	3300030336	Soil	MQAVRCKECGETRWSLFSSFRARAFEAPCELCGGETVVERRRPGAHRGPLPVERRWAAPADPVGSGGHSRVHAR
Ga0299913_100264934	3300031229	Soil	MEAVRCTQCGETRWSLFPGSLAHALEAPCELCGGETVLERRRPGAGPEELDVERRRAAIADRIAGAEPASSRGLATH
Ga0272433_100224957	3300031450	Rock	MEAVRCIQCGETRWSLFPGSLEHSLEAPCEICGGPTVVERRRPGAGPDELSVERRRTAIADRIAGVDSGLAAR
Ga0307408_1000871733	3300031548	Rhizosphere	MEAVRCKQCGETRWSLFPGSLAHSLEAPCELCGGETVIERRRPGAGPDRLDVERRRAAIADRIAGSSRLATR
Ga0307405_100233392	3300031731	Rhizosphere	MEAVRCMQCGETRWSLFPGTLARALEAPCELCGGETVIERRRPGAGPVELDVERRRAAIADRIAGLDSTLTAR
Ga0307413_106188852	3300031824	Rhizosphere	MEAVRCTQCGGTRWSLMPGSLTHLLEAPCELCGGSRVIERRRPGAGPDRLDMERRRAEIADRIAGRRGDTHLTTR
Ga0307413_106628661	3300031824	Rhizosphere	ETRWSLFPGTLARALEAPCELCGGETVIERRRPGAGPVELDVERRRAAIADRIAGLDSTLTAR
Ga0307416_1000230511	3300032002	Rhizosphere	MEAVRCTQCGETRWSLFPGTLARALEAPCELCGGETVIERRRPGAGPVELDVERRRAAIADRIAGLDSTLTAR
Ga0326721_106281043	3300032080	Soil	LMHLLEEPCELCGGEQVIERRRPGAGPESLDVERRRAAIADRIAGVRDDARLSAR
Ga0326721_108654702	3300032080	Soil	MEAVRCTQCGGTRWSLLGSLTHLLEEPCELCGGPRTIERRRPGAGPETLDIERRRAEIADRIAGRHADDRLTTR
Ga0307415_1019043592	3300032126	Rhizosphere	MEAVRCTRCGETRWSLFPGSLARSLEAPCELCGGETVIERRRPGAGPVELSVERRRAAVADRIAGLDSRLTTR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100611

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences