Metagenome Family F100606

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100606
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	56 residues
Representative Sequence	MSNDLNELIARKDKLEGELHHELSADYNELMKKLSESFRDMHENSVQYYKQKA
Number of Associated Samples	92
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	52.94 %
% of genes near scaffold ends (potentially truncated)	94.12 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (96.078 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (19.608 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.137 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 90.57% β-sheet: 0.00% Coil/Unstructured: 9.43%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13365	Trypsin_2	4.90
PF01988	VIT1	1.96
PF13561	adh_short_C2	1.96
PF01938	TRAM	0.98
PF07992	Pyr_redox_2	0.98
PF03853	YjeF_N	0.98
PF07452	CHRD	0.98
PF02742	Fe_dep_repr_C	0.98
PF00171	Aldedh	0.98
PF00083	Sugar_tr	0.98
PF08450	SGL	0.98
PF13602	ADH_zinc_N_2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	1.96
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	1.96
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.98
COG0062	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain	Nucleotide transport and metabolism [F]	0.98
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.98
COG1321	Mn-dependent transcriptional regulator MntR, DtxR family	Transcription [K]	0.98
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.98
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.98
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	96.08 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.96 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	43.14 %
Unclassified	root	N/A	1.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	43.14 %
Unclassified	root	N/A	1.96 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	38.24 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	1.96 %
Unclassified	root	N/A	1.96 %
unclassified Thaumarchaeota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	38.24 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	1.96 %
Unclassified	root	N/A	1.96 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.98 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.98 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	38.24 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1.96 %
Unclassified	root	N/A	1.96 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.98 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.98 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	38.24 %
Unclassified	root	N/A	1.96 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.98 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	0.98 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.98 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.98 %

Name	Rank	Taxonomy	Distribution
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	38.24 %
Unclassified	root	N/A	1.96 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	0.98 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.98 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.98 %
Thaumarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918002\|contig04163	All Organisms → cellular organisms → Archaea	1962	Open in IMG/M
2209111006\|2214606059	All Organisms → cellular organisms → Archaea	1137	Open in IMG/M
2228664021\|ICCgaii200_c0393356	Not Available	703	Open in IMG/M
3300001904\|JGI24736J21556_1004895	All Organisms → cellular organisms → Archaea	2274	Open in IMG/M
3300003396\|JGI26137J50245_100273	All Organisms → cellular organisms → Archaea	2244	Open in IMG/M
3300003993\|Ga0055468_10007685	All Organisms → cellular organisms → Archaea	1946	Open in IMG/M
3300004114\|Ga0062593_101016102	All Organisms → cellular organisms → Archaea	852	Open in IMG/M
3300004157\|Ga0062590_102731241	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	527	Open in IMG/M
3300004463\|Ga0063356_105013866	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	569	Open in IMG/M
3300005185\|Ga0066811_1004573	All Organisms → cellular organisms → Archaea	852	Open in IMG/M
3300005293\|Ga0065715_10000249	All Organisms → cellular organisms → Archaea	24023	Open in IMG/M
3300005294\|Ga0065705_10001638	All Organisms → cellular organisms → Archaea	919	Open in IMG/M
3300005343\|Ga0070687_100179878	All Organisms → cellular organisms → Archaea	1266	Open in IMG/M
3300005356\|Ga0070674_100767336	All Organisms → cellular organisms → Archaea	830	Open in IMG/M
3300005438\|Ga0070701_10187889	All Organisms → cellular organisms → Archaea	1214	Open in IMG/M
3300005441\|Ga0070700_100243798	All Organisms → cellular organisms → Archaea	1286	Open in IMG/M
3300005457\|Ga0070662_100024111	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	4187	Open in IMG/M
3300005530\|Ga0070679_101144513	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	723	Open in IMG/M
3300005543\|Ga0070672_100090359	All Organisms → cellular organisms → Archaea	2469	Open in IMG/M
3300005544\|Ga0070686_100280031	All Organisms → cellular organisms → Archaea	1229	Open in IMG/M
3300005549\|Ga0070704_102180566	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	515	Open in IMG/M
3300005618\|Ga0068864_101812464	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	616	Open in IMG/M
3300005843\|Ga0068860_100525534	All Organisms → cellular organisms → Archaea	1183	Open in IMG/M
3300006844\|Ga0075428_102286979	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	556	Open in IMG/M
3300006845\|Ga0075421_100795995	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → unclassified Thaumarchaeota → Thaumarchaeota archaeon	1089	Open in IMG/M
3300006845\|Ga0075421_102353711	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	558	Open in IMG/M
3300006881\|Ga0068865_102091898	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	515	Open in IMG/M
3300009081\|Ga0105098_10201035	All Organisms → cellular organisms → Archaea	920	Open in IMG/M
3300009081\|Ga0105098_10400773	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	681	Open in IMG/M
3300009100\|Ga0075418_10201298	All Organisms → cellular organisms → Archaea	2120	Open in IMG/M
3300009100\|Ga0075418_12579501	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	555	Open in IMG/M
3300009147\|Ga0114129_12622056	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	601	Open in IMG/M
3300009147\|Ga0114129_12915938	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	565	Open in IMG/M
3300009147\|Ga0114129_13487197	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	503	Open in IMG/M
3300009156\|Ga0111538_11481469	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	856	Open in IMG/M
3300009156\|Ga0111538_13200367	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	570	Open in IMG/M
3300009801\|Ga0105056_1070292	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	519	Open in IMG/M
3300009811\|Ga0105084_1029009	All Organisms → cellular organisms → Archaea	939	Open in IMG/M
3300009817\|Ga0105062_1074566	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	647	Open in IMG/M
3300010304\|Ga0134088_10124498	All Organisms → cellular organisms → Archaea	1221	Open in IMG/M
3300010373\|Ga0134128_10334443	All Organisms → cellular organisms → Archaea	1694	Open in IMG/M
3300012478\|Ga0157328_1000112	All Organisms → cellular organisms → Archaea	2710	Open in IMG/M
3300012519\|Ga0157352_1012822	All Organisms → cellular organisms → Archaea	914	Open in IMG/M
3300012882\|Ga0157304_1000803	All Organisms → cellular organisms → Archaea	2294	Open in IMG/M
3300012897\|Ga0157285_10056411	All Organisms → cellular organisms → Archaea	974	Open in IMG/M
3300012909\|Ga0157290_10204012	All Organisms → cellular organisms → Archaea	673	Open in IMG/M
3300012976\|Ga0134076_10615637	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	508	Open in IMG/M
3300013096\|Ga0157307_1074863	All Organisms → cellular organisms → Archaea	678	Open in IMG/M
3300014268\|Ga0075309_1119829	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	653	Open in IMG/M
3300018027\|Ga0184605_10544473	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	501	Open in IMG/M
3300018028\|Ga0184608_10442040	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	560	Open in IMG/M
3300018052\|Ga0184638_1316032	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	526	Open in IMG/M
3300018053\|Ga0184626_10420395	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	531	Open in IMG/M
3300018054\|Ga0184621_10008322	All Organisms → cellular organisms → Archaea	2928	Open in IMG/M
3300018066\|Ga0184617_1240696	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	542	Open in IMG/M
3300018075\|Ga0184632_10259395	All Organisms → cellular organisms → Archaea	758	Open in IMG/M
3300018075\|Ga0184632_10477171	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	514	Open in IMG/M
3300018076\|Ga0184609_10377435	All Organisms → cellular organisms → Archaea	661	Open in IMG/M
3300018920\|Ga0190273_11857526	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	551	Open in IMG/M
3300019356\|Ga0173481_10011064	All Organisms → cellular organisms → Archaea	2551	Open in IMG/M
3300019867\|Ga0193704_1046561	All Organisms → cellular organisms → Archaea	854	Open in IMG/M
3300019869\|Ga0193705_1002657	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	3937	Open in IMG/M
3300019876\|Ga0193703_1054143	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	611	Open in IMG/M
3300019879\|Ga0193723_1031744	All Organisms → cellular organisms → Archaea	1590	Open in IMG/M
3300019997\|Ga0193711_1043213	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	547	Open in IMG/M
3300020003\|Ga0193739_1000209	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	16382	Open in IMG/M
3300020016\|Ga0193696_1012938	All Organisms → cellular organisms → Archaea	2269	Open in IMG/M
3300021073\|Ga0210378_10213684	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	734	Open in IMG/M
3300021078\|Ga0210381_10085201	All Organisms → cellular organisms → Archaea	1005	Open in IMG/M
3300021972\|Ga0193737_1017091	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1006	Open in IMG/M
3300021972\|Ga0193737_1040547	All Organisms → cellular organisms → Archaea	669	Open in IMG/M
3300022756\|Ga0222622_10603244	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	792	Open in IMG/M
3300022880\|Ga0247792_1002713	All Organisms → cellular organisms → Archaea	2511	Open in IMG/M
3300022901\|Ga0247788_1042930	All Organisms → cellular organisms → Archaea	832	Open in IMG/M
3300022901\|Ga0247788_1059245	All Organisms → cellular organisms → Archaea	720	Open in IMG/M
3300023064\|Ga0247801_1090518	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	508	Open in IMG/M
3300025918\|Ga0207662_10042104	All Organisms → cellular organisms → Archaea	2691	Open in IMG/M
3300025925\|Ga0207650_10104979	All Organisms → cellular organisms → Archaea	2180	Open in IMG/M
3300025934\|Ga0207686_10926426	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	704	Open in IMG/M
3300025945\|Ga0207679_11232116	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	687	Open in IMG/M
3300026088\|Ga0207641_12035308	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	575	Open in IMG/M
3300026142\|Ga0207698_10314434	All Organisms → cellular organisms → Archaea	1464	Open in IMG/M
3300027428\|Ga0207617_100711	All Organisms → cellular organisms → Archaea	1238	Open in IMG/M
3300027490\|Ga0209899_1003267	All Organisms → cellular organisms → Bacteria	3701	Open in IMG/M
3300027543\|Ga0209999_1063701	All Organisms → cellular organisms → Archaea	703	Open in IMG/M
3300027552\|Ga0209982_1040166	All Organisms → cellular organisms → Archaea	746	Open in IMG/M
3300027577\|Ga0209874_1058459	All Organisms → cellular organisms → Archaea	984	Open in IMG/M
3300027682\|Ga0209971_1058012	All Organisms → cellular organisms → Archaea	936	Open in IMG/M
3300027909\|Ga0209382_10666240	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1124	Open in IMG/M
3300027947\|Ga0209868_1004473	All Organisms → cellular organisms → Archaea	1293	Open in IMG/M
3300027948\|Ga0209858_1027819	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	534	Open in IMG/M
3300027961\|Ga0209853_1020611	Not Available	1993	Open in IMG/M
3300028380\|Ga0268265_10233681	All Organisms → cellular organisms → Archaea	1617	Open in IMG/M
3300028381\|Ga0268264_10019786	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	5499	Open in IMG/M
3300028715\|Ga0307313_10175775	All Organisms → cellular organisms → Archaea	663	Open in IMG/M
3300028715\|Ga0307313_10211536	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	602	Open in IMG/M
3300028718\|Ga0307307_10200094	All Organisms → cellular organisms → Archaea	632	Open in IMG/M
3300028828\|Ga0307312_10791096	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	628	Open in IMG/M
3300031908\|Ga0310900_11610824	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	549	Open in IMG/M
3300031940\|Ga0310901_10203318	All Organisms → cellular organisms → Archaea	790	Open in IMG/M
3300032211\|Ga0310896_10268148	All Organisms → cellular organisms → Archaea	870	Open in IMG/M
3300032421\|Ga0310812_10209028	All Organisms → cellular organisms → Archaea	849	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.65%
Host-Associated	Host-Associated	32.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	52.94%
Plants	Host-Associated → Plants	32.35%
Aquatic	Environmental → Aquatic	14.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.69%
Sediment	Environmental → Aquatic → Sediment	9.80%
Freshwater	Environmental → Aquatic → Freshwater	3.92%
Marine	Environmental → Aquatic → Marine	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.80%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Sand	Environmental → Terrestrial → Soil → Sand	7.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.80%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.82%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Rhizosphere And Bulk Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Rhizosphere And Bulk Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918002	Rhizosphere and bulk soil microbial communities from the Great Lakes - Sample MSB1	Environmental	Open in IMG/M
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2	Host-Associated	Open in IMG/M
3300003396	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM	Host-Associated	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300014268	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021972	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023064	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027428	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A2-11 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027552	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027947	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027948	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MSB1_00004990	2140918002	Rhizosphere And Bulk Soil	EIIVIIMSNDLNELIARKDKLEGELNHELSADYNELMKKMSESFRDMHENAVQYYKQKANEQLDKMEKHTIR
2213642386	2209111006	Arabidopsis Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHKLSADYNELMKKMSESFRDMHEDSVQYYKQ
ICCgaii200_03933562	2228664021	Soil	MSNDLNQLLERKNKLEEELNTKLSADYTELMKKVSEGFHGMQVSAVEYYKQKANEEM
JGI24736J21556_10048952	3300001904	Corn Rhizosphere	MSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREMHEESAQYYKQKQMNNLIKWKKTYNQVIN*
JGI26137J50245_1002733	3300003396	Arabidopsis Thaliana Rhizosphere	MLRNHSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKMEKNI
Ga0055468_100076854	3300003993	Natural And Restored Wetlands	MSNDLIELIARKDKLEGELHHELSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKMEKN
Ga0062593_1010161021	3300004114	Soil	MLRNHSNNMPNDLNELIARKDKLEGELHHKLSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKM
Ga0062590_1027312411	3300004157	Soil	MPNDLNELIARKDKLEGELHHKLSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKM
Ga0063356_1050138661	3300004463	Arabidopsis Thaliana Rhizosphere	MLRMRSNNMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRN
Ga0066811_10045731	3300005185	Soil	MSNDLNELIARKDKLEGELNHELSADYNQLMKKMSESFRDMHENSVQYYKQKAN
Ga0065715_1000024928	3300005293	Miscanthus Rhizosphere	MSNDLNQLLERRNKLEEELNHKISADYSELMRKVSEGFRG
Ga0065705_100016381	3300005294	Switchgrass Rhizosphere	MSNDLNELIARKDKLEGELNHELSADYNELMKKMSESFRDMHEN
Ga0070687_1001798781	3300005343	Switchgrass Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREMHEESAQYYKQKANEQLDKMEKNIQ
Ga0070674_1007673361	3300005356	Miscanthus Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREMHEES
Ga0070701_101878893	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFRDMHEESVQYYKQKANEQLDKMEKNI
Ga0070700_1002437981	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPNDLNELIARKDKLEGELHHKLSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGN
Ga0070662_1000241118	3300005457	Corn Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFR
Ga0070679_1011445131	3300005530	Corn Rhizosphere	MLRMRSNNMSNDLNELIARKDKLEGELHHELSSDYNELMK
Ga0070672_1000903591	3300005543	Miscanthus Rhizosphere	MSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRNMHENSVQYYKQKANEELDKMEKNIQSGNKL
Ga0070686_1002800312	3300005544	Switchgrass Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREM
Ga0070704_1021805662	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREMHEESAQYYKQKANEQLDKMEKNI
Ga0068864_1018124641	3300005618	Switchgrass Rhizosphere	MLRMRSNNMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRNMHENSVQYYKQKANEELDKMEKNIQS
Ga0068860_1005255342	3300005843	Switchgrass Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFRDMHEDSVQYYKQKPDSLLD*
Ga0075428_1022869792	3300006844	Populus Rhizosphere	MLRNNSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQ
Ga0075421_1007959953	3300006845	Populus Rhizosphere	MLRMRSNSMSNDLNELIARKDKLEGQLHHELSSDYNELMKNLS
Ga0075421_1023537111	3300006845	Populus Rhizosphere	MLRNHSNYMSNDLNELIARKDKLEGELHHELSADYNELMKKLSESFRDMHENSVQ
Ga0068865_1020918981	3300006881	Miscanthus Rhizosphere	MLRMRSNNMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSE
Ga0105098_102010352	3300009081	Freshwater Sediment	MSNDLNELIARKDKLEGELHHELSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKMEKNI
Ga0105098_104007731	3300009081	Freshwater Sediment	MSNDLNELIARKDKLEGELHHELSTDYNELMKKLSESFRDMHENSVQYYRQKANEELDKMEKNIQSGNK
Ga0075418_102012981	3300009100	Populus Rhizosphere	MSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANE
Ga0075418_125795011	3300009100	Populus Rhizosphere	MLQNHSNHMSNDLNELIARKDKLEGELNHELSADYNELMKKLSESFRDMHEN
Ga0114129_126220561	3300009147	Populus Rhizosphere	MSNDLNELIARKDKLEGELHHELSADYNELMKKLSESFRDMHENSVQYYKQKANDELDKM
Ga0114129_129159381	3300009147	Populus Rhizosphere	MSNDLNELIARKDKLEGELNHELSADYNELMKKLSESFRDMHENSVQ
Ga0114129_134871971	3300009147	Populus Rhizosphere	MSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQ
Ga0111538_114814692	3300009156	Populus Rhizosphere	MSNDLNELIARKDKLEGELNHELSADYNELMKKNE*
Ga0111538_132003671	3300009156	Populus Rhizosphere	MSNDLNELIARKDKLEGELHHELSADYNELMKKLSESFRDMHENSVQYYKQKA
Ga0105056_10702921	3300009801	Groundwater Sand	MSNDLNELIARKDKLEGELHHELSSDYNELMKNLSDSFRNIHENSVQYYKQKA
Ga0105084_10290092	3300009811	Groundwater Sand	MSNDLNELIARKDKLEGELHHELSSDYNELMKNLSDSFRDMHE
Ga0105062_10745661	3300009817	Groundwater Sand	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSESFRDMHENSVQYYKQKANEELDKM
Ga0134088_101244982	3300010304	Grasslands Soil	MSNDLNELIARKDKLEGELNHELSAEYNELMKKVSKSFRDMHENSVQYYKQKANEELDKWKKTYDQAIN*
Ga0134128_103344431	3300010373	Terrestrial Soil	MSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREMHEESAQYYKQKANEQLDKMEKNIQSGNKL
Ga0157328_10001125	3300012478	Arabidopsis Rhizosphere	MSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFRDMHEESVQYYKQKANEQLDKMEK
Ga0157352_10128221	3300012519	Unplanted Soil	MSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFRDMHEDSVKYYKQK
Ga0157304_10008031	3300012882	Soil	MSNDLNELIARKDKLEGELHLELSSDYNELMKNLSESFR
Ga0157285_100564111	3300012897	Soil	MSNDLNELIARKDKLEGELHLELSSDYNELMKNLSESFRDMHENSVQYYKQKANEEL
Ga0157290_102040122	3300012909	Soil	MSNDLNELIARKDKLEGELHLELSSDYNELMKNLSE
Ga0134076_106156371	3300012976	Grasslands Soil	VALDMFICYKTIVIIISNDLNELIARKDKLEGELNHELSAEYNELMKKVSKSFRDMHENSVQYYKQKANEEVDKNGRKHTIRQ*
Ga0157307_10748631	3300013096	Soil	MSNDLNELIARKDKLEGELHLELSSDYNELMKNLSESFRD
Ga0075309_11198292	3300014268	Natural And Restored Wetlands	ELIARKDKLEGELHHELSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKMEKNT*
Ga0184605_105444731	3300018027	Groundwater Sediment	MLRNHSNYMSNDLNELIARKDKLEGELHHELSADYNELMKKVSESFRDMHENSVQY
Ga0184608_104420401	3300018028	Groundwater Sediment	MLRNHSNNMSNDLNELITRKDKLEGELNHELSADYNELMKKVSESFRDMH
Ga0184638_13160321	3300018052	Groundwater Sediment	MLRNLSNNMSNDLNELIARKDKLEGELNHELSADYNELMKKVSESF
Ga0184626_104203951	3300018053	Groundwater Sediment	MLRNLSNNMSNDLNELIARKDKLEGELNHELSADYNELMKKVSESFRDMHENSVQ
Ga0184621_100083224	3300018054	Groundwater Sediment	MVVGDMFIYMLRNHSNYMSNDLNELIARKDKLEGELHHELSADYNELMKKVSESFRDMHENSVQYYKQKANEE
Ga0184617_12406961	3300018066	Groundwater Sediment	MLRNHSNNMSNDLNELIARKDKLEVELHHELSSDYNELMKNLSESFRDMHEN
Ga0184632_102593952	3300018075	Groundwater Sediment	MVVGGMFIYMLRNHSNYMSNDLNELIARKDKIEGELNHELSADYNELMKKMSESF
Ga0184632_104771711	3300018075	Groundwater Sediment	MLRNLSNNMSNDLNELIARKDKLEGELNHELSADYNELMKKVSESFRD
Ga0184609_103774352	3300018076	Groundwater Sediment	MLRNHSNNMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRNMH
Ga0190273_118575261	3300018920	Soil	MLRNHSNNMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRNM
Ga0173481_100110641	3300019356	Soil	MLRNHSNCMSNDLNELIARKDKLEGELHLELSSDYNELMKNLSES
Ga0193704_10465611	3300019867	Soil	MLRKHSNNMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKM
Ga0193705_10026571	3300019869	Soil	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSKSFRDMHENSVQYYKQKANVELDKMEE
Ga0193703_10541431	3300019876	Soil	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSKSFRDMHENSVQYYKQNANEELDKM
Ga0193723_10317443	3300019879	Soil	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSKSFRDMHENSVQYYKQKANVELDKMEENIRSGN
Ga0193711_10432131	3300019997	Soil	MLWNHSNYMANDLNELIARKDKLEGELHHELSADYNELMKKLSESYRDMHE
Ga0193739_100020921	3300020003	Soil	MLRNHSNYMSNDLNELIARKDKLEGELHHELSTDYNELMKKLSESFRDMHENSVQYYKQK
Ga0193696_10129386	3300020016	Soil	MPNDLNELIARKDKLEGELHHKLSADYNELMKKLSESFSDMH
Ga0210378_102136843	3300021073	Groundwater Sediment	MLRNHSNNMSNEINELIARKDKIEGELNHELSADYNELMKKMSESFRDMQFSAIL
Ga0210381_100852011	3300021078	Groundwater Sediment	MLRNHSNYMPNDLNELIARKDKLEGELYHELSADYNELMKGLSESFRDMHENSMQYYKQKANEELDKMEKNIQSG
Ga0193737_10170913	3300021972	Soil	MLRMRSNSMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSDSFRNMHENSVQYC
Ga0193737_10405472	3300021972	Soil	MLRNHSNYMSNDLNELIARKDKLEGELHHELSSDY
Ga0222622_106032441	3300022756	Groundwater Sediment	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSKSFRDMHENSVQYYKQKANEELDK
Ga0247792_10027131	3300022880	Soil	MLRNHSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKME
Ga0247788_10429302	3300022901	Soil	MLRNHSNCMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENS
Ga0247788_10592451	3300022901	Soil	MLRNHSNNMPNDLNELIARKDKLEGELHHKLSADYNELMKK
Ga0247801_10905181	3300023064	Soil	MSNDLNELIARKDKLEGELHLELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKMEKNIQS
Ga0207662_100421044	3300025918	Switchgrass Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFREMHEESAQYYKQKANEQLDKMEKNIQS
Ga0207650_101049794	3300025925	Switchgrass Rhizosphere	MLRMHSNMSNDLNELIPSKDKPEGELHYELSSDYEFMKNL
Ga0207686_109264261	3300025934	Miscanthus Rhizosphere	MLRMRSNNMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRNMHENSVQYYKQKANEELD
Ga0207679_112321161	3300025945	Corn Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFRDMHEDSVKYYKQKANEQLDKMEKNIQSGN
Ga0207641_120353081	3300026088	Switchgrass Rhizosphere	NMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRNMHENSVQYYKQKANEELGK
Ga0207698_103144341	3300026142	Corn Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKKMSESFRDM
Ga0207617_1007113	3300027428	Soil	MLRNHSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANEEL
Ga0209899_10032677	3300027490	Groundwater Sand	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSESFRDMHENS
Ga0209999_10637011	3300027543	Arabidopsis Thaliana Rhizosphere	MSNDLNELIARKDKLEGELHHELSADYNELMKNLSESFRDMHENSVQYYKQKANEEL
Ga0209982_10401662	3300027552	Arabidopsis Thaliana Rhizosphere	MSNDLNELIARKDKLEGELHLELSSDYNELMKNLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNKLS
Ga0209874_10584592	3300027577	Groundwater Sand	MLRNHSNYMSNDLNELIARKDKLEGELHHELSADYNELMKKVSESFRDMHENSVQYYKQK
Ga0209971_10580121	3300027682	Arabidopsis Thaliana Rhizosphere	MLRNHSNNMPNDLNELIARKDKLEGELHHKLSADYNELMKKLSESFRDMHENSVQYYKQKANEELDKMEKNIQSGNK
Ga0209382_106662401	3300027909	Populus Rhizosphere	MLRMRSNSMSNDLNELIARKDKLEGQLHHELSSDYNELMTNLSESFRN
Ga0209868_10044731	3300027947	Groundwater Sand	MFICYEIIVIIMSNDLNELITRKDKLEGELNHELSADYNELMKKMSESFRDMHENSVQNYKQKANEELDKMEK
Ga0209858_10278191	3300027948	Groundwater Sand	MLRNHSNYMSNDLNELIARKDKLEGELHHELSADYNELMRKVSESFRD
Ga0209853_10206111	3300027961	Groundwater Sand	MLRNHSNNMSNDLNELIARKDKLEGELNHELSADYNELMK
Ga0268265_102336813	3300028380	Switchgrass Rhizosphere	MLRNHSNNMPNDLNELIARKDNLEGELHHKLSADYNELMKKLSESFRDMHENSVQYYKQKANEE
Ga0268264_100197861	3300028381	Switchgrass Rhizosphere	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKNLS
Ga0307313_101757752	3300028715	Soil	MVVGDMFIYMLRNHSNYMSNDLNELIARKDKLEGELHHELSADYNELMKKVSESFRDMHENSVQYYKQKA
Ga0307313_102115362	3300028715	Soil	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSKSFRDMHENSVQYYKQKANEELDKM
Ga0307307_102000941	3300028718	Soil	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSKSFR
Ga0307312_107910961	3300028828	Soil	MSNDLNELIARKDKLEGELNHELSADYNELMKKVSKSFRDMHENSVQ
Ga0310900_116108241	3300031908	Soil	MLRNNSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQY
Ga0310901_102033181	3300031940	Soil	MLRKHSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSE
Ga0310896_102681482	3300032211	Soil	MLRNHSNYMSNDLNELIARKDKLEGELHHELSSDYNELMKNLSESFRDMHENSVQYYKQKANE
Ga0310812_102090282	3300032421	Soil	MLRKHSNNMSNDLNELIGRKDKLEGELNHELSADYNELMKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100606

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences