Metagenome / Metatranscriptome Family F100591

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100591
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	79 residues
Representative Sequence	MQVNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRGG
Number of Associated Samples	69
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.35 %
% of genes near scaffold ends (potentially truncated)	14.71 %
% of genes from short scaffolds (< 2000 bps)	81.37 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.157 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.784 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01694	Rhomboid	45.10
PF02463	SMC_N	26.47
PF12732	YtxH	2.94
PF00884	Sulfatase	1.96
PF07784	DUF1622	1.96
PF01348	Intron_maturas2	0.98
PF05960	DUF885	0.98
PF03951	Gln-synt_N	0.98
PF02636	Methyltransf_28	0.98
PF06470	SMC_hinge	0.98
PF11975	Glyco_hydro_4C	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	45.10
COG4828	Uncharacterized membrane protein	Function unknown [S]	1.96
COG0174	Glutamine synthetase	Amino acid transport and metabolism [E]	0.98
COG1196	Chromosome segregation ATPase Smc	Cell cycle control, cell division, chromosome partitioning [D]	0.98
COG1565	SAM-dependent methyltransferase, MidA family	General function prediction only [R]	0.98
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.16 %
Unclassified	root	N/A	7.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.16 %
Unclassified	root	N/A	7.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.16 %
Unclassified	root	N/A	7.84 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	72.55 %
Unclassified	root	N/A	7.84 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	72.55 %
Unclassified	root	N/A	7.84 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	44.12 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	13.73 %
Unclassified	root	N/A	7.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	44.12 %
Sphaerobacteridae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae	12.75 %
Unclassified	root	N/A	7.84 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	44.12 %
Sphaerobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales	12.75 %
Unclassified	root	N/A	7.84 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	44.12 %
Sphaerobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae	12.75 %
Unclassified	root	N/A	7.84 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	44.12 %
Sphaerobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	12.75 %
Unclassified	root	N/A	7.84 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	44.12 %
Sphaerobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter	9.80 %
Unclassified	root	N/A	7.84 %
Nitrolancea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea	0.98 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	44.12 %
Sphaerobacter thermophilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	9.80 %
Unclassified	root	N/A	7.84 %
Nitrolancea hollandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	0.98 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2062053	Not Available	667	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_14135236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	872	Open in IMG/M
3300000750\|JGI12272J11983_1105009	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300000750\|JGI12272J11983_1172383	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300000831\|JGI12271J12027_1210961	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300000956\|JGI10216J12902_101120086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	874	Open in IMG/M
3300002568\|C688J35102_118273126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	544	Open in IMG/M
3300004153\|Ga0063455_100540529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	739	Open in IMG/M
3300004156\|Ga0062589_101779423	Not Available	617	Open in IMG/M
3300005045\|Ga0071328_153517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	6977	Open in IMG/M
3300005093\|Ga0062594_100125236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1612	Open in IMG/M
3300005093\|Ga0062594_101390708	Not Available	711	Open in IMG/M
3300005713\|Ga0066905_101434617	Not Available	626	Open in IMG/M
3300006038\|Ga0075365_10399392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	970	Open in IMG/M
3300006038\|Ga0075365_10475614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	883	Open in IMG/M
3300006092\|Ga0082021_1189256	All Organisms → cellular organisms → Bacteria	67985	Open in IMG/M
3300006845\|Ga0075421_101997205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	618	Open in IMG/M
3300006876\|Ga0079217_11554906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	526	Open in IMG/M
3300006918\|Ga0079216_10533446	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300007094\|Ga0102532_1027002	All Organisms → cellular organisms → Bacteria	1738	Open in IMG/M
3300007521\|Ga0105044_10643934	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300007790\|Ga0105679_10679642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1107	Open in IMG/M
3300009789\|Ga0126307_10010270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6785	Open in IMG/M
3300009789\|Ga0126307_10013018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	6111	Open in IMG/M
3300009789\|Ga0126307_10021233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4910	Open in IMG/M
3300009789\|Ga0126307_10088238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae	2450	Open in IMG/M
3300009789\|Ga0126307_10163668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1782	Open in IMG/M
3300009789\|Ga0126307_10643881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	855	Open in IMG/M
3300009789\|Ga0126307_10716475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	807	Open in IMG/M
3300009840\|Ga0126313_10014237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5136	Open in IMG/M
3300009840\|Ga0126313_10021329	All Organisms → cellular organisms → Bacteria	4315	Open in IMG/M
3300009840\|Ga0126313_10156295	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
3300009840\|Ga0126313_10992460	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300009840\|Ga0126313_11341522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	592	Open in IMG/M
3300009840\|Ga0126313_11748652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	519	Open in IMG/M
3300010036\|Ga0126305_10043914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	2506	Open in IMG/M
3300010037\|Ga0126304_10732519	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300010038\|Ga0126315_10032619	All Organisms → cellular organisms → Bacteria	2721	Open in IMG/M
3300010038\|Ga0126315_10236806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1110	Open in IMG/M
3300010038\|Ga0126315_10293557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1002	Open in IMG/M
3300010039\|Ga0126309_10065172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1785	Open in IMG/M
3300010039\|Ga0126309_10065940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1777	Open in IMG/M
3300010039\|Ga0126309_10475801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	764	Open in IMG/M
3300010040\|Ga0126308_10312373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1035	Open in IMG/M
3300010040\|Ga0126308_10793668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	655	Open in IMG/M
3300010040\|Ga0126308_11281411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	520	Open in IMG/M
3300010041\|Ga0126312_10004230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	9685	Open in IMG/M
3300010041\|Ga0126312_10092094	All Organisms → cellular organisms → Bacteria	2065	Open in IMG/M
3300010042\|Ga0126314_10339392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1077	Open in IMG/M
3300010042\|Ga0126314_10506233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	877	Open in IMG/M
3300010044\|Ga0126310_10210684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1285	Open in IMG/M
3300010044\|Ga0126310_10300193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1105	Open in IMG/M
3300010045\|Ga0126311_10536204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	920	Open in IMG/M
3300010166\|Ga0126306_10419168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1049	Open in IMG/M
3300010166\|Ga0126306_10552546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Nitrolancea → Nitrolancea hollandica	914	Open in IMG/M
3300010166\|Ga0126306_11177813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	629	Open in IMG/M
3300011333\|Ga0127502_11020195	Not Available	555	Open in IMG/M
3300012212\|Ga0150985_100563522	All Organisms → cellular organisms → Bacteria	1752	Open in IMG/M
3300012212\|Ga0150985_110932073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2141	Open in IMG/M
3300012212\|Ga0150985_111549594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	787	Open in IMG/M
3300012469\|Ga0150984_112944969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	547	Open in IMG/M
3300012680\|Ga0136612_10037056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2453	Open in IMG/M
3300012681\|Ga0136613_10626768	Not Available	577	Open in IMG/M
3300012682\|Ga0136611_10010526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	6525	Open in IMG/M
3300012908\|Ga0157286_10092601	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300014310\|Ga0075331_1041624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1025	Open in IMG/M
3300015077\|Ga0173483_10201003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	917	Open in IMG/M
3300017787\|Ga0183260_10034756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	3788	Open in IMG/M
3300017789\|Ga0136617_10062845	All Organisms → cellular organisms → Bacteria	3261	Open in IMG/M
3300017965\|Ga0190266_10958612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	568	Open in IMG/M
3300018432\|Ga0190275_11155060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	849	Open in IMG/M
3300018432\|Ga0190275_11781861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	694	Open in IMG/M
3300018465\|Ga0190269_10628228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	733	Open in IMG/M
3300018465\|Ga0190269_11115238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	610	Open in IMG/M
3300018469\|Ga0190270_12582679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	570	Open in IMG/M
3300018476\|Ga0190274_12876005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	577	Open in IMG/M
3300018933\|Ga0193614_1036833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1389	Open in IMG/M
3300019356\|Ga0173481_10807957	Not Available	519	Open in IMG/M
3300019377\|Ga0190264_10636021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	771	Open in IMG/M
3300019767\|Ga0190267_10927033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	600	Open in IMG/M
3300025944\|Ga0207661_10093009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	2515	Open in IMG/M
3300027850\|Ga0209591_10501708	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300027909\|Ga0209382_11411239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	699	Open in IMG/M
3300028811\|Ga0307292_10480429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	532	Open in IMG/M
3300028872\|Ga0307314_10136004	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300031091\|Ga0308201_10020735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1374	Open in IMG/M
3300031229\|Ga0299913_10991549	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	807	Open in IMG/M
3300031548\|Ga0307408_100810504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	850	Open in IMG/M
3300031731\|Ga0307405_10222074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1387	Open in IMG/M
3300031824\|Ga0307413_10170530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Sphaerobacteridae → Sphaerobacterales → Sphaerobacterineae → Sphaerobacteraceae → Sphaerobacter → Sphaerobacter thermophilus	1540	Open in IMG/M
3300031824\|Ga0307413_11810448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	547	Open in IMG/M
3300031903\|Ga0307407_10886007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	684	Open in IMG/M
3300031938\|Ga0308175_100951773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	947	Open in IMG/M
3300031995\|Ga0307409_102476569	Not Available	548	Open in IMG/M
3300032002\|Ga0307416_102273187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	643	Open in IMG/M
3300032002\|Ga0307416_103393139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	533	Open in IMG/M
3300032004\|Ga0307414_10393370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1202	Open in IMG/M
3300032005\|Ga0307411_11822009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	565	Open in IMG/M
3300032126\|Ga0307415_100000376	All Organisms → cellular organisms → Bacteria	19053	Open in IMG/M
3300032126\|Ga0307415_101375602	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	671	Open in IMG/M
3300032159\|Ga0268251_10276000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	689	Open in IMG/M
3300032159\|Ga0268251_10291059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	674	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.45%
Host-Associated	Host-Associated	21.57%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.63%
Plants	Host-Associated → Plants	21.57%
Aquatic	Environmental → Aquatic	8.82%
Wastewater	Engineered → Wastewater	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.71%
Freshwater	Environmental → Aquatic → Freshwater	8.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Roots	Host-Associated → Plants → Roots	1.96%
Phylloplane	Host-Associated → Plants → Phylloplane	1.96%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.73%
Ice	Environmental → Aquatic → Freshwater → Ice	6.86%
Sand	Environmental → Terrestrial → Soil → Sand	4.90%
Loam	Environmental → Terrestrial → Soil → Loam	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.96%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.96%
Lake	Environmental → Aquatic → Freshwater → Lake	0.98%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.73%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	4.90%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	11.76%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	4.90%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.94%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.96%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.98%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%
Wastewater Treatment Plant	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater Treatment Plant	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000750	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000831	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate B) D5B (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005045	Permafrost microbial communities from Fox Tunnel, Fairbanks, Alaska, USA	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006092	Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore	Engineered	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007094	Freshwater lake microbial communities from Singapore - a non-axenic Oscillatoriales culture (M13A)	Environmental	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012680	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ224A (23.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012682	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ223 (23.06)	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300014310	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018933	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300027850	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_20620532	3300000033	Soil	MQSFFKLDVDLEALTDAMWEFVTDPRPSRNERPVVQALHDVHPDSVEVMEAMLIDGTEERGDVAAYVATVFGQRVAPPR*
ICChiseqgaiiFebDRAFT_141352362	3300000363	Soil	MSSFLRFDVDLEALTDAMFGFITDPHPSRNERPVVKALDDVHPESVEVMESMLLDGTEEREDVAAYVAAVFGGPAMPGQ*
JGI12272J11983_11050092	3300000750	Soil	MTSPFRIQVDLDALTDAMFEFVSDPRPTRNNLPVVRELSDLHPESLDVMEAMLLDGTEERDDVAAYVETVFGSGRLRLR*
JGI12272J11983_11723833	3300000750	Soil	MQVNPFFRFDVDLDELTDAMWEFVTDPHPSRNERPVVKALDDMHPDSVDVLEAMLLDGTEERSDVAAYVDTVFGGRASLGR*
JGI12271J12027_12109612	3300000831	Soil	MSLSPPFVRITVDHERLIDEMVAYLHDPKPSRNDREVVKALDEIHPESVEVLESMLLDGAEDREDVAAYVRAVFDK*
JGI10216J12902_1011200863	3300000956	Soil	MSSFLRFDVDLEALTDAMFGFITDPHPSRNERPVVKALDDVHPESVEVMESMLLDGTEEREDVAAYVAAVFGGPAMPGR*
C688J35102_1182731262	3300002568	Soil	MQPFFKLDVDLEALTDAMWEFVTDPRPSRNERPVVQALHDVHPDSVEVMEAMLIDGTEERGDVADYVAAVFAQRAAPSR*
Ga0063455_1005405292	3300004153	Soil	VQANPFVRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVDVLEAMLLDGTEEREDVAAYVATVFAGRGG*
Ga0062589_1017794232	3300004156	Soil	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRSR*
Ga0071328_1535174	3300005045	Permafrost	MHSQVNPFVRFDVDLDALTDAMWAFVTDPRPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEEREDVAAYVATVFGNRPLLDRS*
Ga0062594_1001252362	3300005093	Soil	MTPFFRFEVDLDALTDAMWAFVTDPHPSRNERLVVQALHDVHPESVEVLEAMLLDGTEERGDVAAYVMTVFGGHAGPRG*
Ga0062594_1013907082	3300005093	Soil	MQVNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVATVFAGRGG*
Ga0066905_1014346172	3300005713	Tropical Forest Soil	VQPFFRLEVDLEALTDAMWDFVTDPRPTRNERPVVQALNDIHPDSVEVLEAMLLDGTEERADVAAYVAAVFGQRATPLR*
Ga0075365_103993922	3300006038	Populus Endosphere	MTSPFRIQVDLDALTDAMFEFVSDPRPTRNTLPVVQELSDLHPESLDVMESMLLDGTEERADVAAYVETVFGDTHLRLR*
Ga0075365_104756142	3300006038	Populus Endosphere	MTSPFRIQVDLDALTDAMFEFVSDPRPTRNNLPVVQELSDLHPESVDVMESMLLDGTEERADVAAYVETVFGSGRLRP*
Ga0082021_118925646	3300006092	Wastewater Treatment Plant	MTSPFRIQVDLDALTDAMFEFVSDPRPTRNNLPVVQELSDLHPESVDVMESMLLDGTEERADVAAYVETVFGHARLRLR*
Ga0075421_1019972051	3300006845	Populus Rhizosphere	MSSFLRYDVDLEALTDAMFGFITDPHPSRNERPVVKALDDVHPDSVEVMEAMLLDGTEEREDVADYVRAVFGSWAASER*
Ga0079217_115549061	3300006876	Agricultural Soil	MGVNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEERDDVAAYVAAVFGERTTLAR*
Ga0079216_105334462	3300006918	Agricultural Soil	MQVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRPRLDRL*
Ga0102532_10270022	3300007094	Freshwater Lake	VSFRNPFVRISVDTERLIDEMHGFVTDPSPSRNSREIVRVLDDLHPESVDVLEAMLLDGTESREDIAAYVAAIFPTTAD*
Ga0105044_106439342	3300007521	Freshwater	MTPFFRIDVDLEALTDAMWAFVSDPRPSRNDLPVVQALSDMHPDSIDVMEAMLLDGTEERADVAAYVTTVFGERATPWR*
Ga0105679_106796421	3300007790	Soil	MRVNPFIRFDVDLESLTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEKRDDVAAYVAAVFSDRDR*
Ga0126307_100102705	3300009789	Serpentine Soil	MRVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEEREDVAAYVTTVFGDRTTFER*
Ga0126307_100130184	3300009789	Serpentine Soil	VQANPFVRFDVDLETLTDAMWEFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRSG*
Ga0126307_100212332	3300009789	Serpentine Soil	VNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERKDVAAYVSTVFGDRPQLVR*
Ga0126307_100882382	3300009789	Serpentine Soil	MQMNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVATVFAGRGR*
Ga0126307_101636682	3300009789	Serpentine Soil	MQVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEEREDVAAYVATVFGDRPPLVRSR*
Ga0126307_106438812	3300009789	Serpentine Soil	MQVNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRGG*
Ga0126307_107164752	3300009789	Serpentine Soil	MRVNPFVRFDVDLEMLTDAMWAFVTDPRPSRNERPVVKALDDIHPESVDVLESMLLDGTEEREDVAAYVAAVFGHRAG*
Ga0126313_100142376	3300009840	Serpentine Soil	LTKVGIQVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERKDVAAYVNTVFGDRPQLVR*
Ga0126313_100213291	3300009840	Serpentine Soil	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVAT
Ga0126313_101562952	3300009840	Serpentine Soil	MHVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVITVFGDRPPLAR*
Ga0126313_109924601	3300009840	Serpentine Soil	MRVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEEREDVAAYVTTVFGDRTTLER*
Ga0126313_113415222	3300009840	Serpentine Soil	VSIQVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVTTVFGDRGW*
Ga0126313_117486522	3300009840	Serpentine Soil	VQVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEEREDVAAYVATVFAGAESVSRGS*
Ga0126305_100439142	3300010036	Serpentine Soil	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRSG*
Ga0126304_107325191	3300010037	Serpentine Soil	VNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVTTVLGNRPPLER*
Ga0126315_100326193	3300010038	Serpentine Soil	LTKVGIQVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERKDVAAYVSTVFGDRPQLVR*
Ga0126315_102368061	3300010038	Serpentine Soil	VSIQVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVTTVFGDRGG*
Ga0126315_102935572	3300010038	Serpentine Soil	VQVNPFIRFDVDLESLTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFGDRGW*
Ga0126309_100651722	3300010039	Serpentine Soil	MQVNPFVRFDVDLDALTDAMWEFVTDPRPSRNARPVVKALDDIHPDSVDVLEAMLLDGTEERDDVAAYVATVFGDRTTPER*
Ga0126309_100659402	3300010039	Serpentine Soil	VQVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEERQDVAAYVATVFGDRSE*
Ga0126309_104758012	3300010039	Serpentine Soil	VSVQVNPFIRFDVDLEALTDAMWAFVTDPRPSRNKRPVVKALDDIHPESVEVLESMLLDGTEEREDVAAYVATVFGDRYR*
Ga0126308_103123732	3300010040	Serpentine Soil	VQVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEEREDVAAYVATVFAGPGEPVSRGS*
Ga0126308_107936682	3300010040	Serpentine Soil	RFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVTTVFGDRGG*
Ga0126308_112814112	3300010040	Serpentine Soil	MRVNPFVRFDVDLEALTDAMWEFVTDPRPSRNARPVVKALDDIHPDSVDVLEAMLLDGTEERDDVAAYVATVFGDRTTPER*
Ga0126312_100042304	3300010041	Serpentine Soil	VQANPFVRFDVDLEALTDAMWKFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRSG*
Ga0126312_100920941	3300010041	Serpentine Soil	ILIEVSMHVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVITVFGDRPPLAR*
Ga0126314_103393921	3300010042	Serpentine Soil	TVLGEVTVQVNPFIRFDVDLAALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVTTVFGDRGG*
Ga0126314_105062332	3300010042	Serpentine Soil	VQVNPFIRFDVDLESLTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRGG*
Ga0126310_102106842	3300010044	Serpentine Soil	VQVNPFIRFDVDLESLTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVATVFAGRGG*
Ga0126310_103001931	3300010044	Serpentine Soil	LTKVGIQVNPFIRFDVDLEALTDAMWEFVTDPRPTRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVSTVFTDRPPLVR*
Ga0126311_105362041	3300010045	Serpentine Soil	MRVNPFVRFDVDLEALTDAMWEFVTDPQPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEEREDVAAYVATVFGDRTTFER*
Ga0126306_104191682	3300010166	Serpentine Soil	MQLNPFFRFDVDLDELTDAMWEFVTDPHPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEERSDVAAYVATVFGGRVGLER*
Ga0126306_105525462	3300010166	Serpentine Soil	MGVNPFIRFDVDLEALTDAMWAFVTDPRPSRNDRSVVKALDDIHPESVEVLESMLLDGTEERDDVAAYVAAVFGERTTLAR*
Ga0126306_111778132	3300010166	Serpentine Soil	MRVNPFVRFDVDLEMLIDAMWAFVTDPRPSRNERPVVKALDDIHPESVDVLESMLLDGTEEREDVAAYVAAVFGHRAG*
Ga0127502_110201951	3300011333	Soil	MPPIFQYNVDLDALTDAMWEFVSDPKPTRNALPIVETLSDVHPESIDIMESMLLDGTDERADVAAYVAMVFGSRVMG*
Ga0150985_1005635223	3300012212	Avena Fatua Rhizosphere	MQSFFKLDVDLEALTDAMWEFVTDPRPSRNERPVVQALHDVHPDSVDVMEAMLIDGTEERGDVAAYVATVFGQRVAPSS*
Ga0150985_1109320732	3300012212	Avena Fatua Rhizosphere	MQPFFKLDVDLEALTDAMWEFVTDPRPSRNERPVVQALHDVHPDSVEVMEAMLIDGTEERGDVADYVAAVFAQRVAPSR*
Ga0150985_1115495942	3300012212	Avena Fatua Rhizosphere	MQVNPFFRYDVDLDELTNAMWEFVTDPHPSRNERPVVKALDDMHPDSVDVLEAMLLDGTEERSDVAAYVDTVFGGRGTWDGKS*
Ga0150984_1129449691	3300012469	Avena Fatua Rhizosphere	MHVNPFIRFDVDLEALTDAMWEFVTDPQPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEDREDVAAYVTTVFGDRPPWHRS*
Ga0136612_100370562	3300012680	Polar Desert Sand	MTPFFRIDVDLEALTDAMWAFVSDPRPSRNDLPVVQALSDMHPDSIDVMEAMLLDGTEERADVAAYVSTVFGERVTPWR*
Ga0136613_106267682	3300012681	Polar Desert Sand	LNPFFRYDVDLEALTDAMWAFVTDPRPTRNERPVVKALDDTHPDSVEVMEAMLLDGTEERADVAAYVGAVFGGQLTSNQ*
Ga0136611_100105269	3300012682	Polar Desert Sand	MASRLFRLQVDHDALIDAMHAFVIDPHPSRNERPVILELGDLHPESVDVLEAMLLDGTEERREIADYVRAVFDAPQR*
Ga0157286_100926012	3300012908	Soil	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRGG*
Ga0075331_10416241	3300014310	Natural And Restored Wetlands	MSSFLRYDVDLEALTDAMFGFITDPHPSRNERPVIKALDDVHPDSVEVMEAMLLDGTEEREDVAAYVSAVFGGQAMPRR*
Ga0173483_102010032	3300015077	Soil	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYAATVFAGRSG*
Ga0183260_100347564	3300017787	Polar Desert Sand	VSANPFFRYNVDLEALTDAMWAFVTDPRPTRNERHVVKALDDMHPDSVEVMEAMLLDGTEERADVAAYVGAVFGVRNVADR
Ga0136617_100628455	3300017789	Polar Desert Sand	VSLNPFFRYDVDLEALTDAMWAFVTDPRPTRNERPVVKALDDMHPDSVEVMEAMLLDGTEERADVAAYVGAVFG
Ga0190266_109586121	3300017965	Soil	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVDVLEAMLLDGTEEREDVAAYVATVF
Ga0190275_111550601	3300018432	Soil	MPHIFRYEVDLDALTDAMWEFVSDPRPTRNALPIVETLSDVHPESIDVMEAMLLDGTEERGDVAAYVALVFGRQEGPSQTSLTSSR
Ga0190275_117818611	3300018432	Soil	MQSNRFFRYDVDLDELTDAMWEFVTDPHPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEERSDVAAYVDTVFGGRPR
Ga0190269_106282281	3300018465	Soil	VNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVDVLESMLLDGTEEREDVAAYVAAVFGHRVG
Ga0190269_111152382	3300018465	Soil	VQVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEERADVAAYVATVFARDESVSRRSEVGG
Ga0190270_125826792	3300018469	Soil	MQVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRPPLVRSQ
Ga0190274_128760052	3300018476	Soil	MQVNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVATVFAGRGG
Ga0193614_10368333	3300018933	Soil	MHVNPFFRFDVDLDELTDAMWEFVTDPHPSRNERPIIQELNDVHPESVDVLESMLLDGTEERSDVAAYVDTVFGGRASLGR
Ga0173481_108079571	3300019356	Soil	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVNVLEAMLLDGTEEREDVAAYVATVFAGRGG
Ga0190264_106360212	3300019377	Soil	VQVNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEEREDVAAYVATVFGDRVG
Ga0190267_109270332	3300019767	Soil	DLDALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEEREDVAAYVATVFGDRPPLGRS
Ga0207661_100930092	3300025944	Corn Rhizosphere	MTPFFRFEVDLDALTDAMWAFVTDPHPSRNERLVVQALHDVHPESVEVLEAMLLDGTEERGDVAAYVMTVFGGHAGPRG
Ga0209591_105017082	3300027850	Freshwater	MTPFFRIDVDLEALTDAMWAFVSDPRPSRNDLPVVQALSDMHPDSIDVMEAMLLDGTEERADVAAYVTTVFGERATPWR
Ga0209382_114112391	3300027909	Populus Rhizosphere	MQLNPFFRFDVDLDELTEAMWEFVTDPHPSRNERPVVKALDDIHPDSVDVLEAMLLDGTEERADVAAYVATVFGGQAR
Ga0307292_104804291	3300028811	Soil	VNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEERDDVAAYVATVFAGRSG
Ga0307314_101360042	3300028872	Soil	VQVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEEREDVAAYVATVFAGRSG
Ga0308201_100207353	3300031091	Soil	VQVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEERDDVAAYVATVFAGRSG
Ga0299913_109915492	3300031229	Soil	MSSFLRYDVDLEALTDAMFGFITDPHPSRNERPVVKALDDVHPDSVEVMEAMLLDGTEEREDVAAYVSAVFGGQAMPRR
Ga0307408_1008105041	3300031548	Rhizosphere	MRVNPFVRFDVDLEALTDAMWEFVTDPRPSRNDRPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRPRLDRS
Ga0307405_102220742	3300031731	Rhizosphere	MGVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRPRFDRS
Ga0307413_101705302	3300031824	Rhizosphere	MRVNPFVRFDVDLEALTDAMWEFVTDPRPSRNDRPVVKALDDIHPDSVDVLEAMLLDGTEERADVAAYVTTVFGDRPRLDRS
Ga0307413_118104482	3300031824	Rhizosphere	VQVNPFIRFDVDREALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEEREDVAAYVATVFARDESVSR
Ga0307407_108860072	3300031903	Rhizosphere	MRVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRPRLDRS
Ga0308175_1009517731	3300031938	Soil	MRVNLFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRSG
Ga0307409_1024765692	3300031995	Rhizosphere	VQANPFVRFDVDLEALTDAMWEFVIDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEEREDVAAYVATVFAGRSG
Ga0307416_1022731872	3300032002	Rhizosphere	MQVNPFIRFDVDLEALTDAMWAFVTDPRPSRNERPVVKALDDIHPESVEVLESMLLDGTEERDDVAAYVAVVFGDRGR
Ga0307416_1033931392	3300032002	Rhizosphere	MHVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVEVLEAMLLDGTEERDDVAAYVTTVFGDRPPLAR
Ga0307414_103933701	3300032004	Rhizosphere	VNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRPRFDRS
Ga0307411_118220092	3300032005	Rhizosphere	MRVNPFVRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPESVDVLESMLLDGTEERQDVAAY
Ga0307415_10000037616	3300032126	Rhizosphere	DMGVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRPRFDRS
Ga0307415_1013756022	3300032126	Rhizosphere	IRFDVDLEALTDAMWEFVTDPRPSRNERSVVKALDDIHPDSVDVMESMLLDGTEEREDVAAYVATVFGDRAG
Ga0268251_102760002	3300032159	Agave	MGVNPFIRFDVDLEALTDAMWEFVTDPRPSRNERPVVKALDDIHPDSVDVLESMLLDGTEEREDVAAYVATVFGDRAG
Ga0268251_102910592	3300032159	Agave	MRLNPFVRFDVDLDALTDAMWEFVTDPRPSRNERPVIKALDDIHPDSVDVLESMLLDGTEDREDVAAYVTTVFGDWRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100591

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences