Metagenome / Metatranscriptome Family F100518

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100518
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	55 residues
Representative Sequence	MKNLILAAFAALSLTAAVAPAAHAFTFGEFHNTYHSGPYDNTGHGPGETGEEGGGG
Number of Associated Samples	76
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.45 %
% of genes near scaffold ends (potentially truncated)	30.39 %
% of genes from short scaffolds (< 2000 bps)	84.31 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.569 % of family members)
Environment Ontology (ENVO)	Unclassified (31.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.843 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 28.57% β-sheet: 0.00% Coil/Unstructured: 71.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01894	UPF0047	10.78
PF13417	GST_N_3	5.88
PF01679	Pmp3	4.90
PF00834	Ribul_P_3_epim	2.94
PF00199	Catalase	1.96
PF00696	AA_kinase	1.96
PF07589	PEP-CTERM	1.96
PF13411	MerR_1	0.98
PF17200	sCache_2	0.98
PF03466	LysR_substrate	0.98
PF14667	Polysacc_synt_C	0.98
PF12697	Abhydrolase_6	0.98
PF13358	DDE_3	0.98
PF02417	Chromate_transp	0.98
PF13714	PEP_mutase	0.98
PF00271	Helicase_C	0.98
PF08483	Obsolete Pfam Family	0.98
PF04966	OprB	0.98
PF03824	NicO	0.98
PF01220	DHquinase_II	0.98
PF03167	UDG	0.98
PF08281	Sigma70_r4_2	0.98
PF00149	Metallophos	0.98
PF08238	Sel1	0.98
PF07729	FCD	0.98
PF01124	MAPEG	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	10.78
COG0401	Membrane potential modulator PMP3/YqaE, plasma membrane proteolipid 3 (PMP3)/Esi3/RCI2/UPF0057 family	Energy production and conversion [C]	4.90
COG0036	Pentose-5-phosphate-3-epimerase	Carbohydrate transport and metabolism [G]	2.94
COG0753	Catalase	Inorganic ion transport and metabolism [P]	1.96
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.98
COG0757	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.98
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.98
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.98
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.98
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.98
COG3659	Carbohydrate-selective porin OprB	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.98 %
Unclassified	root	N/A	49.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	49.02 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.12 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.27 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	25.49 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.98 %
Ciliophora	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	20.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.98 %
Intramacronucleata	subphylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	6.86 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	2.94 %
Acetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter	1.96 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %
Oligohymenophorea	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	6.86 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	2.94 %
Acetobacter fallax	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter fallax	1.96 %
Scuticociliatia	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	6.86 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2.94 %
Acetobacter fallax	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter fallax	1.96 %
Philasterida	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	6.86 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2.94 %
Acetobacter fallax	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter fallax	1.96 %
Pseudocohnilembidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Pseudocohnilembidae	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	6.86 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2.94 %
Acetobacter fallax	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter fallax	1.96 %
Pseudocohnilembus	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Pseudocohnilembidae → Pseudocohnilembus	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.02 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	6.86 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	2.94 %
Acetobacter fallax	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter fallax	1.96 %
Pseudocohnilembus persalinus	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Pseudocohnilembidae → Pseudocohnilembus → Pseudocohnilembus persalinus	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_120697326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1372	Open in IMG/M
3300004080\|Ga0062385_10536255	Not Available	729	Open in IMG/M
3300004152\|Ga0062386_100290130	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300005944\|Ga0066788_10170070	Not Available	560	Open in IMG/M
3300006893\|Ga0073928_10020558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6800	Open in IMG/M
3300006954\|Ga0079219_12462313	Not Available	506	Open in IMG/M
3300009651\|Ga0105859_1166740	Not Available	631	Open in IMG/M
3300009787\|Ga0116226_10038828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4754	Open in IMG/M
3300010133\|Ga0127459_1007643	Not Available	515	Open in IMG/M
3300010339\|Ga0074046_10356932	Not Available	889	Open in IMG/M
3300010339\|Ga0074046_10368303	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300010341\|Ga0074045_10104503	All Organisms → cellular organisms → Bacteria	1957	Open in IMG/M
3300010341\|Ga0074045_10109187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1907	Open in IMG/M
3300010341\|Ga0074045_10114399	Not Available	1856	Open in IMG/M
3300010343\|Ga0074044_10792578	Not Available	619	Open in IMG/M
3300010855\|Ga0126355_1073198	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300010855\|Ga0126355_1171490	Not Available	672	Open in IMG/M
3300010860\|Ga0126351_1014780	Not Available	517	Open in IMG/M
3300010864\|Ga0126357_1054032	Not Available	586	Open in IMG/M
3300010878\|Ga0136899_10270519	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Scuticociliatia → Philasterida → Pseudocohnilembidae → Pseudocohnilembus → Pseudocohnilembus persalinus	648	Open in IMG/M
3300011120\|Ga0150983_12501800	Not Available	675	Open in IMG/M
3300012212\|Ga0150985_107503809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1372	Open in IMG/M
3300012212\|Ga0150985_110419604	Not Available	656	Open in IMG/M
3300012212\|Ga0150985_115569638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1058	Open in IMG/M
3300012212\|Ga0150985_119365651	Not Available	705	Open in IMG/M
3300012212\|Ga0150985_122138795	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300012469\|Ga0150984_104691057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2407	Open in IMG/M
3300012469\|Ga0150984_104704183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	569	Open in IMG/M
3300012469\|Ga0150984_105244768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	607	Open in IMG/M
3300012469\|Ga0150984_116750394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300012469\|Ga0150984_120478019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	537	Open in IMG/M
3300014167\|Ga0181528_10782909	Not Available	535	Open in IMG/M
3300014201\|Ga0181537_10951549	Not Available	581	Open in IMG/M
3300014493\|Ga0182016_10675545	Not Available	582	Open in IMG/M
3300014499\|Ga0182012_10035608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	4184	Open in IMG/M
3300014501\|Ga0182024_11049597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	967	Open in IMG/M
3300014501\|Ga0182024_11964838	Not Available	648	Open in IMG/M
3300016728\|Ga0181500_1438309	Not Available	753	Open in IMG/M
3300018043\|Ga0187887_10105036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1701	Open in IMG/M
3300019256\|Ga0181508_1254008	Not Available	646	Open in IMG/M
3300020583\|Ga0210401_11410863	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300021170\|Ga0210400_10712436	Not Available	825	Open in IMG/M
3300021170\|Ga0210400_10755779	Not Available	798	Open in IMG/M
3300021181\|Ga0210388_10443392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1141	Open in IMG/M
3300021401\|Ga0210393_10801156	Not Available	767	Open in IMG/M
3300021405\|Ga0210387_10783699	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300021406\|Ga0210386_11396591	Not Available	587	Open in IMG/M
3300021474\|Ga0210390_10333827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1284	Open in IMG/M
3300022523\|Ga0242663_1045312	Not Available	759	Open in IMG/M
3300022525\|Ga0242656_1017539	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038	Open in IMG/M
3300022530\|Ga0242658_1023616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1133	Open in IMG/M
3300022530\|Ga0242658_1208107	Not Available	535	Open in IMG/M
3300022530\|Ga0242658_1239970	Not Available	509	Open in IMG/M
3300022557\|Ga0212123_10700463	Not Available	624	Open in IMG/M
3300022712\|Ga0242653_1048131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	686	Open in IMG/M
3300022722\|Ga0242657_1074498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	794	Open in IMG/M
3300025574\|Ga0208717_1012813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2393	Open in IMG/M
3300025588\|Ga0208586_1094123	Not Available	650	Open in IMG/M
3300027692\|Ga0209530_1054551	Not Available	1166	Open in IMG/M
3300027692\|Ga0209530_1132982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	700	Open in IMG/M
3300027698\|Ga0209446_1006151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2941	Open in IMG/M
3300027812\|Ga0209656_10028537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3333	Open in IMG/M
3300027812\|Ga0209656_10179861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1038	Open in IMG/M
3300027812\|Ga0209656_10188402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1008	Open in IMG/M
3300027824\|Ga0209040_10164447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter fallax	1185	Open in IMG/M
3300027908\|Ga0209006_11406652	Not Available	533	Open in IMG/M
3300028748\|Ga0302156_10376434	Not Available	622	Open in IMG/M
3300028762\|Ga0302202_10157341	All Organisms → cellular organisms → Bacteria → Proteobacteria	1211	Open in IMG/M
3300028762\|Ga0302202_10278798	Not Available	815	Open in IMG/M
3300028765\|Ga0302198_10295702	Not Available	764	Open in IMG/M
3300028813\|Ga0302157_10060049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2599	Open in IMG/M
3300029907\|Ga0311329_10241220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1351	Open in IMG/M
3300029913\|Ga0311362_10732699	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300029954\|Ga0311331_10102941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3630	Open in IMG/M
3300030225\|Ga0302196_10447119	Not Available	547	Open in IMG/M
3300030225\|Ga0302196_10491947	Not Available	511	Open in IMG/M
3300030557\|Ga0257198_1160900	Not Available	510	Open in IMG/M
3300030617\|Ga0311356_11489567	Not Available	612	Open in IMG/M
3300030688\|Ga0311345_11311581	Not Available	518	Open in IMG/M
3300030730\|Ga0307482_1297416	Not Available	518	Open in IMG/M
3300030839\|Ga0073999_11095797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	732	Open in IMG/M
3300030937\|Ga0138302_1080396	Not Available	576	Open in IMG/M
3300031015\|Ga0138298_1723437	Not Available	506	Open in IMG/M
3300031091\|Ga0308201_10059793	Not Available	987	Open in IMG/M
3300031524\|Ga0302320_10370168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1833	Open in IMG/M
3300031525\|Ga0302326_11134577	Not Available	1083	Open in IMG/M
3300031663\|Ga0307484_108226	Not Available	675	Open in IMG/M
3300031788\|Ga0302319_10079194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	4920	Open in IMG/M
3300031788\|Ga0302319_10088545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4546	Open in IMG/M
3300032515\|Ga0348332_12360387	Not Available	521	Open in IMG/M
3300033402\|Ga0326728_10000143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	290982	Open in IMG/M
3300033402\|Ga0326728_10154562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2473	Open in IMG/M
3300033405\|Ga0326727_10996159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acetobacter → Acetobacter fallax	612	Open in IMG/M
3300033405\|Ga0326727_11082725	Not Available	573	Open in IMG/M
3300033475\|Ga0310811_10076295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4409	Open in IMG/M
3300034127\|Ga0370489_0217248	Not Available	570	Open in IMG/M
3300034130\|Ga0370494_004228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3821	Open in IMG/M
3300034268\|Ga0372943_0031386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	2887	Open in IMG/M
3300034268\|Ga0372943_0121302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1561	Open in IMG/M
3300034268\|Ga0372943_0270091	Not Available	1073	Open in IMG/M
3300034349\|Ga0370504_0041606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1177	Open in IMG/M
3300034652\|Ga0316598_236992	Not Available	519	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.24%
Host-Associated	Host-Associated	11.76%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	74.51%
Aquatic	Environmental → Aquatic	13.73%
Plants	Host-Associated → Plants	10.78%
Human	Host-Associated → Human	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.92%
Peat	Environmental → Terrestrial → Peat	19.61%
Freshwater	Environmental → Aquatic → Freshwater	11.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.96%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%
Digestive System	Host-Associated → Human → Digestive System	0.98%
Peat Moss	Host-Associated → Plants → Peat Moss	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	15.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.90%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.96%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.57%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	13.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.86%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	5.88%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.90%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.90%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.94%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.98%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009787	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fa - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010855	Boreal forest soil eukaryotic communities from Alaska, USA - W1-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010860	Boreal forest soil eukaryotic communities from Alaska, USA - C5-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010878	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines Pi 3A (Eukaryote Community Metatranscriptome) (version 7)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016728	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025574	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-3 shallow (SPAdes)	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028748	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_2	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028765	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030225	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3	Environmental	Open in IMG/M
3300030557	Metatranscriptome of decayed wood fungal communities from Pinus contorta in Tenderfoot Creek Experimental Forest, Montana, United States - TCEF2-2N (Eukaryote Community Metatranscriptome)	Host-Associated	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030688	II_Bog_N2 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030839	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFB (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031663	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034127	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_16	Environmental	Open in IMG/M
3300034130	Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M
3300034349	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_03D_18	Environmental	Open in IMG/M
3300034652	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1206973262	3300002568	Soil	MKNLILAAFAALSLTAAIAPAANAFISGLPHNAYHSGPYDNTGRGPGQSGMQGGGG*
Ga0062385_105362552	3300004080	Bog Forest Soil	MKNLFFAAFAALSLAIAVAPAANAFTRGFPTSTQHSGPYDDTGHGPGETGMEGGGG*
Ga0062386_1002901302	3300004152	Bog Forest Soil	MRNLMLAAFAALSLTAAIAPAANAWTLGTVHTTYHKGPYDNTGNGPQETGMEGGG*
Ga0066788_101700701	3300005944	Soil	MKNLFLAAVAALSLTAAIAPGANAATRGFPHSTYHSGPYDNTGAGPGETGMEG
Ga0073928_100205581	3300006893	Iron-Sulfur Acid Spring	MRKFILGMVAALGLTAGIAPMAHAYTNTYHSGPYDNTGNGPGESGLEGGGG*
Ga0079219_124623131	3300006954	Agricultural Soil	MKHLVLAAVAAFGLSAGLSQPAHAFIRGTLHAQYHFGPYDNTGNGPGQSGLEGGGG*
Ga0105859_11667401	3300009651	Permafrost Soil	MKNLFLAAVAALSLTAAIAPVANAATRGFPHSTYHSGPYDNTGAGPGETGMEGGGG*
Ga0116226_100388283	3300009787	Host-Associated	MKNLVLAALAALSLTAGVAPMAHAYTSGTAYHSGPYDNTGNGPGETGLEGGGG*
Ga0127459_10076432	3300010133	Grasslands Soil	MKHLVLAAVAALGLSTGIALPAHAFIRGTPHTQYHSGPYDNTGNGPGQSGLEGGGG*
Ga0074046_103569322	3300010339	Bog Forest Soil	LAAFAAVSLTAAIAPVANAASFGTPHATYHTGPYDNTGHRPQETGMEGGGG*
Ga0074046_103683032	3300010339	Bog Forest Soil	MDMDISGMIRTAFAALSLTAAIVPVAHAASWGRPDSTYRQGPYDNTGNGPQQTGLEGGGG
Ga0074045_101045033	3300010341	Bog Forest Soil	MDMNISGMIRAAFAALSLTAAIVPVAHAASWGRPDTTYRQGPYDNTGNGPQQTGLEGGGG
Ga0074045_101091872	3300010341	Bog Forest Soil	MRSLILAAFAAFSLTAAIAPAANAWTVGTVHTTYHSGPYDNTGHGPQETGMEGGGG*
Ga0074045_101143993	3300010341	Bog Forest Soil	MKHLILAAFAALGRTAGVAGAAHAFTTGVPHTQYPAGPYDNTGHGPQETGMEGGGG*
Ga0074044_107925782	3300010343	Bog Forest Soil	MNMNVSVMIRAAFAALSVTAAIVPVALAACGGRPDTTYRQGPYDNTGSGPQQTGLEGGGG
Ga0126355_10731982	3300010855	Boreal Forest Soil	MKKLILAAFAALTLTAGVAPMAHAYTHHTGPYDNTGNGPGETGLEGGGG*
Ga0126355_11714902	3300010855	Boreal Forest Soil	MKTLILAAFAALSLTAVAAQAAQTANYGRPQTTYHSGPYDNTGNSPNNENWLGGGGG*
Ga0126351_10147802	3300010860	Boreal Forest Soil	RIQMKNIILAAVAAFGLAGAMAPIANAATFGSSHTAYHQGPYDNTGKGPAETGLEGGGG*
Ga0126357_10540321	3300010864	Boreal Forest Soil	MKNLFFAAFAALSLAVAVAPAANAFTRGFPTSTQHSGPYDDTGHGPNETGMEGGGG*
Ga0136899_102705192	3300010878	Soil	VKTLFLAAFAALSLGVAIAPAANAFTRGFPQSTHHSGPYDDTGNGPGESGMEGG
Ga0150983_125018001	3300011120	Forest Soil	MKKLFFAAFAALSLAVAVAPAANAFTRGFPTSTHHSGAYDDTGHGPSETGMEGGGG*
Ga0150985_1075038093	3300012212	Avena Fatua Rhizosphere	LPSQVPSKPDISPDSGRRNPMKNLILAAFAALSLTTAIAPAANAFISGLPHNAYHSGPYDNTGRGPGQSGMEGGGG*
Ga0150985_1104196043	3300012212	Avena Fatua Rhizosphere	MKHLILAAIAALSLTTGMSQAANAFTTDRPHTTYHSGPYDNTGNGP
Ga0150985_1155696382	3300012212	Avena Fatua Rhizosphere	MKNLILAAFAALSLITVVAPSANAFIRGVPHSTYHSGPYDNTGNGPGQTGLEGGGG*
Ga0150985_1193656511	3300012212	Avena Fatua Rhizosphere	MKNLVFAAFAALSLTVAVAPAASAFTTGTPHTTYRSGPYDNTGNGPGQTGLQGGGG*
Ga0150985_1221387952	3300012212	Avena Fatua Rhizosphere	MKYLVLAAVAALGLSAGISQPAQAFVRGTPHAHYHSGPYDNTGNGPGESGLEGGGG*
Ga0150984_1046910573	3300012469	Avena Fatua Rhizosphere	MKYLVLAAVAALGLSAGISQPAQAFVRGTPHTHYHSGPYDNTGNGPGESGLEGGGG*
Ga0150984_1047041832	3300012469	Avena Fatua Rhizosphere	MKTLILAAFAALSLTTAIAPAANAFVRGVPHTAYHSGPYDNTGRGPGETGMEGGGG*
Ga0150984_1052447682	3300012469	Avena Fatua Rhizosphere	IFSPDSGWRNSMKNLILAAFAALTLTTAVAPAANAFVTGLPHNAYHSGPYDNTGRGPGQSGLEGGGG*
Ga0150984_1167503941	3300012469	Avena Fatua Rhizosphere	SARQPDEERSQMKNLFLAAFAVLSLGVAMAPSAHAFTRGFPHTSYHSGPYDDTGKGPGQTGMEGGGG*
Ga0150984_1204780192	3300012469	Avena Fatua Rhizosphere	AALSLTTAIAPAANAFVRGVPHTAYHSGPYDNTGRGPGETGMEGGGG*
Ga0181528_107829091	3300014167	Bog	MITMKKLLLAAFAALTLTAGVAPMANALEYSNHSQAYDNTGHSPSQYGLEGGGG*
Ga0181537_109515491	3300014201	Bog	MKSMILAAFAALSLGVAVAPAANAAFFGNLQGYHQGPYDDTGHGPQESGLEGGGG*
Ga0182016_106755451	3300014493	Bog	MKSFFLAAFAALSLTAALVPAACALGGGRPHTTYHSGPYDNTGNGPG
Ga0182012_100356085	3300014499	Bog	MKKLILAAFAALSLSAGVAPMAHALVYSHHTAPYDNTGNSPGESGLEGGGG*
Ga0182024_110495972	3300014501	Permafrost	MEMSEMKSLILAAFAALSLTAAIAPAANAALSSYHSGPYNNTGNGPNESGLEGGGG*
Ga0182024_119648381	3300014501	Permafrost	MRSLILAAFAALSLTAAIAPVADAATFGSPQTSYHQGPYDNTGNGPANVYNGGDN*
Ga0181500_14383091	3300016728	Peatland	MKKLLLAAFAALTLTAGVAPVAHALTYSHHTGPYDNTGNGPSQSGLEGGGG
Ga0187887_101050362	3300018043	Peatland	MKRLILAAFAALTLTAGGAPMAYANTRGFYHNTYHSGPYDNTGNGAGQTGLDGGGG
Ga0181508_12540081	3300019256	Peatland	MKKLFLAAFAALTLTAGVAPVAHALTYSHHTGPYDNTGNGPSQSGLEGGGG
Ga0210401_114108631	3300020583	Soil	MKNLILAAFAALSLSAAVAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0210400_107124362	3300021170	Soil	MRNLILADFAALSRRAGVALMAYAYTTGFAHNPYHSCPYDNIGNGSGETGLEGGGG
Ga0210400_107557792	3300021170	Soil	MKNLVLAAFAALSLTAAIAPVANAALPGRPGTSYHAGPYDNTGHGPQESGQEGGGG
Ga0210388_104433922	3300021181	Soil	MKNLFFAVFAALSLAVAVAPGANAFTRGFPTSTHHSGAYDDTGHGPSETGMEGGGG
Ga0210393_108011561	3300021401	Soil	MKNLFFAAFAALSLAVAVAPAANAFTRGFPTSTHHSGAYDDTGHGPSETGMEGGGG
Ga0210387_107836991	3300021405	Soil	ALSLSAAVAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0210386_113965912	3300021406	Soil	KNLFFAAFAALSLAVAVAPAANAFTRGFPTSTHHSGAYDDTGHGPSETGMEGGGG
Ga0210390_103338272	3300021474	Soil	MKNLFLAAFAALSLAVAVAPAANAFTRGFPTSTQHSGPYDDTGHGPSETGMEGGGG
Ga0242663_10453122	3300022523	Soil	MKKLFFAAFAALSVAVAVAPAANAFTRGFPTSTHHSGAYDDTGHGPSETGMEGGGG
Ga0242656_10175391	3300022525	Soil	DISPDPIERRRIPMKNLILAAFAALSLSAAVAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0242658_10236162	3300022530	Soil	DISPDPIERWRIPMKNLILAAFAALSLSAAVAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0242658_12081071	3300022530	Soil	PTRRRWRIPMKNLFFAAFAALSLAVAVAPAANAFTRGFPTSTHHSGAYDDTGHGPSETGMEGGGG
Ga0242658_12399703	3300022530	Soil	DISPDPIERWRIPMKNLILAAFAVLSLSAAAAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0212123_107004632	3300022557	Iron-Sulfur Acid Spring	MRKFILGMVAALGLTAGIAPMAHAYTNTYHSGPYDNTGNGPGESGLEGGGG
Ga0242653_10481311	3300022712	Soil	VSPDPIERWRIPMKNLILAAFAALSLSAAVAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0242657_10744982	3300022722	Soil	SPDPIERRRIPMKNLILAAFAALSLSAAVAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0208717_10128131	3300025574	Arctic Peat Soil	MKNMILAAFAALSLTAAIAPVANAATFGASHQGSYDNTGHGPQETGLEGGGG
Ga0208586_10941231	3300025588	Arctic Peat Soil	MKNLFLAAFAAMSLAVAIAPAANAYTRGFPTSTQHSGPYDNTGHSPSEAGLEGGGG
Ga0209530_10545512	3300027692	Forest Soil	MKNLFLAAFAALSMAVAIAPAANAFTRGFPTSSQHSGPYDDTGRGPSETGMMGGGG
Ga0209530_11329822	3300027692	Forest Soil	MKNLFFAALAALSLAVAIAPAANAFTRGFPTSTHHSGPYDDTGHGPGETGMEGG
Ga0209446_10061511	3300027698	Bog Forest Soil	AALSLAAITPVVANAATSGFPQSSLSQHHGSYDDTGRGPQETGLEGGGG
Ga0209656_100285372	3300027812	Bog Forest Soil	MNMRVMIRAAFAALSLTAAIVPVANAASWGRPDSTHRQGPYDNTGHGPQETGMEGGGG
Ga0209656_101798612	3300027812	Bog Forest Soil	MQNLILAGFAAVSLTAAIAPVANAASFGTPHATFHTGPYDNTGHRPQETGMEGGGG
Ga0209656_101884021	3300027812	Bog Forest Soil	MRNLMLAAFAALSLTAAIAPAANAWTLGTVHTTYHKGPYDNTGNGPQETGMEGGG
Ga0209040_101644471	3300027824	Bog Forest Soil	MNLSVMIRAAFAALSLTAGIVPAACAAGWGRPDPTYRQGPYDNTGNGPQQTGLEGGGG
Ga0209006_114066522	3300027908	Forest Soil	MKNLFLAAFAALSLGVAIAPAANAYTRGFPTSTQHSGPYDDTGHSPSEPGLNGGGG
Ga0302156_103764342	3300028748	Bog	MKKLILAAFAALTLAAGVAPMAHAYTGGFYHNSYHSGPYDNTGHGPGETG
Ga0302202_101573412	3300028762	Bog	MRNLVLAAFAAISLTVAIAPAASAAIGLPHNAYHTGPYDNTGRGPQQSGMEGGGG
Ga0302202_102787982	3300028762	Bog	MKKLILAAFAALTLAAGVAPMAHAYTGGFYHNSYHSGPYDNTGHGPGETGLEGGGG
Ga0302198_102957021	3300028765	Bog	MKKLILAAFAALSLSAGVAPMAHALVYSHHTAPYDNTGNSPGESGLEGGGG
Ga0302157_100600493	3300028813	Bog	MKTAMMIRAAFAVLVLAAGLVPVANAGTLGRPDSTQRHGPYDNTGNSPQQTFGMEGGGG
Ga0311329_102412201	3300029907	Bog	MKKLILAAFAALSLSAGVAPMAHALVYSHHTAPYDNTGNSPGESGLEGG
Ga0311362_107326992	3300029913	Bog	MSTMKKLILAAFAALTLAAGVAPMAHAYTGGFYHNSYHSGPYDNTGHGPGETGLEGGGG
Ga0311331_101029414	3300029954	Bog	VAPMAHAYTGGFYHNSYHSGPYDNTGHGPGETGLEGGGG
Ga0302196_104471191	3300030225	Bog	AFAVLVLAAGLVPVANAGTLGRPDSTQRHGPYDNTGNSPQQTFGMEGGGG
Ga0302196_104919472	3300030225	Bog	MKKLILAAFAALSLSAGVAPMAHALVYSHHTAPYDNTG
Ga0257198_11609001	3300030557	Host-Associated	MKKLILAAFAALSLTAGIAPMAHAYTTGFVHNSYHSGPYDNTGHGPGQTGEEGGGG
Ga0311356_114895672	3300030617	Palsa	MKNLILAAFAALVLTAGVAPMARAYTTGFVNNAYQSGQYDNASQGFGDSGTQRDD
Ga0311345_113115812	3300030688	Bog	MKNLILAAFAALSLSAGVAPMAHALVYSHHTAPYDNTGNSPGESGLEGGGG
Ga0307482_12974162	3300030730	Hardwood Forest Soil	MKKLVLAAFAALSLVAGVAPMAHAYTSGFVHNTYHSGPYDNTGKGPGETGMEGGGG
Ga0073999_110957972	3300030839	Soil	MKNLILAAVAALGLSAAITPAANAAIWGSPHPAHHSGPYDNTGNGPGESGMEGGGG
Ga0138302_10803962	3300030937	Soil	MKNLFFAAFAALSLAVAVAPAANAFTRGFPTSTRHSGAYDDTGHGPSETGMEGGGG
Ga0138298_17234373	3300031015	Soil	PDPIERWRIPMKNLILAAFAALSLSAAVAPMAYAYTGGSVHNAYHSGPYDNTGNGPGETGQEGGGG
Ga0308201_100597931	3300031091	Soil	MKHLILAAIAALSLTAGITQAANAFTTGRPHTTYHSGPYDNTGNGPSETGLEGGGG
Ga0302320_103701682	3300031524	Bog	MRNLVLAAFAAISLTVAIAPAARAAIGLPHNAYHTGPYDNTGRGPQQSGMEGGGG
Ga0302326_111345772	3300031525	Palsa	MKNLILAAFAALVLTAGVAPMARAYTTGFVNNAYQSGQYDNASQGFGDSGTQRD
Ga0307484_1082261	3300031663	Hardwood Forest Soil	MKKLVLAAFAALSLTAWAAPMAHAFTSGFVHNTYHSGPYDNTGNGPGETGLEGGGG
Ga0302319_100791946	3300031788	Bog	MKKLILAAFAALSLSAGVAPMAHALVYSHHTAPYDNTGNSPGESG
Ga0302319_100885455	3300031788	Bog	LAAFAALSLSAGVAPMAHALVYSHHTAPYDNTGNSPGESGLEGGGG
Ga0348332_123603871	3300032515	Plant Litter	MKNLILAAFAALSLTAAVAPAAHAFTFGEFHNTYHSGPYDNTGHGPGETGEEGGGG
Ga0326728_1000014391	3300033402	Peat Soil	MKSFFLAAIAALSLTAALAPAASAYTRGFPQTTHRSGPYDNTGNGPSETGMEGGGG
Ga0326728_101545623	3300033402	Peat Soil	MKSFFPAVIAALSLTVAIAPAMSACTRGVPHTTYHSGPYDNTGNGPGETGLEGGGGS
Ga0326727_109961592	3300033405	Peat Soil	MNISVLTRAAFAALCLTAALAPVANAAISGRPATTHRAGPYDNTGNGPQETGMEGGGGG
Ga0326727_110827251	3300033405	Peat Soil	MKSFFLAAIAVLSLGAATAPAAYAYTRGVPHTTYHAGPYDNTGNGPGETGM
Ga0310811_100762953	3300033475	Soil	MKKLVLAAFAALSLVAGVAPMAHAYTTGFVHNTYHSGPYDNTGKGPGETGMEGGGG
Ga0370489_0217248_43_198	3300034127	Untreated Peat Soil	MKNLILAAFAALSLGMAVAPAANALVYSNQSGPYDNTGRGPQQSGLQGGGG
Ga0370494_004228_983_1165	3300034130	Untreated Peat Soil	MDMKTAMMIRAGFALLSLTAAVAPAADAANWGRPDPTHRSGPYDNTGKGPQTYGAEGGGG
Ga0372943_0031386_2455_2625	3300034268	Soil	MKNLFLAAFAVLSLGVAMAPAAHAFTRGFPHTSYHSGPYDDTGKGPGQTGMQGGGG
Ga0372943_0121302_1262_1429	3300034268	Soil	MKSFILAAIAALSLTAAVAPVANAATFHNQTTTHQGPYDNTGHGPQETGMEGGGG
Ga0372943_0270091_715_888	3300034268	Soil	MKKMFFAAFTMLTLAATAVAPVAANAATVHNQTSVHQGAYDNTGHGPQETGLEGGGG
Ga0370504_0041606_847_1023	3300034349	Untreated Peat Soil	MNSTVIMRAAFAALSLTAAIVPVANAANRGRPETTHRQGPYDNTGNGPQQSGLEGGGG
Ga0316598_236992_37_207	3300034652	Untreated Peat Soil	MKTLVLAAFAALTLTAAIAPTASAFTTGRPHTTYHSGPYDNTGNGPNQTGLEGGGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100518

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences