Metagenome Family F100506

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100506
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	63 residues
Representative Sequence	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGPTNMTSP
Number of Associated Samples	68
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.94 %
% of genes near scaffold ends (potentially truncated)	38.24 %
% of genes from short scaffolds (< 2000 bps)	80.39 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.529 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (36.274 % of family members)
Environment Ontology (ENVO)	Unclassified (23.529 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (35.294 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 31.63% β-sheet: 0.00% Coil/Unstructured: 68.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00072	Response_reg	11.76
PF01243	Putative_PNPOx	1.96
PF01904	DUF72	0.98
PF09557	DUF2382	0.98
PF02735	Ku	0.98
PF05559	DUF763	0.98
PF00127	Copper-bind	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.98
COG1415	Uncharacterized conserved protein, DUF763 domain	Function unknown [S]	0.98
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
All Organisms	root	All Organisms	26.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
cellular organisms	root	All Organisms → cellular organisms	26.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	21.57 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.96 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.98 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	0.98 %
Crenarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota	0.98 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.96 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.98 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → environmental samples	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.96 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	0.98 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.98 %
uncultured crenarchaeote	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → environmental samples → uncultured crenarchaeote	0.98 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.96 %
Prochlorotrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Prochlorotrichaceae	0.98 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	0.98 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	0.98 %
uncultured crenarchaeote	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → environmental samples → uncultured crenarchaeote	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Paraburkholderia heleia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia heleia	1.96 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.98 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	0.98 %
Prochlorothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Prochlorotrichaceae → Prochlorothrix	0.98 %
uncultured crenarchaeote	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → environmental samples → uncultured crenarchaeote	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Paraburkholderia heleia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia heleia	1.96 %
Candidatus Nitrosocosmicus oleophilus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	0.98 %
Prochlorothrix hollandica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Prochlorotrichaceae → Prochlorothrix → Prochlorothrix hollandica	0.98 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	0.98 %
uncultured crenarchaeote	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → environmental samples → uncultured crenarchaeote	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004157\|Ga0062590_102474176	All Organisms → cellular organisms → Archaea	549	Open in IMG/M
3300004463\|Ga0063356_100955062	All Organisms → cellular organisms → Archaea	1218	Open in IMG/M
3300004463\|Ga0063356_102376638	All Organisms → cellular organisms → Archaea	810	Open in IMG/M
3300004479\|Ga0062595_100945472	Not Available	733	Open in IMG/M
3300004479\|Ga0062595_101329048	Not Available	649	Open in IMG/M
3300004643\|Ga0062591_100439432	Not Available	1095	Open in IMG/M
3300004643\|Ga0062591_100994676	Not Available	797	Open in IMG/M
3300005093\|Ga0062594_100531891	All Organisms → cellular organisms → Archaea	1006	Open in IMG/M
3300005093\|Ga0062594_102500991	Not Available	567	Open in IMG/M
3300005093\|Ga0062594_102537373	Not Available	564	Open in IMG/M
3300005289\|Ga0065704_10245429	All Organisms → cellular organisms → Archaea	1003	Open in IMG/M
3300005290\|Ga0065712_10054540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia heleia	677	Open in IMG/M
3300005293\|Ga0065715_10895059	Not Available	561	Open in IMG/M
3300005356\|Ga0070674_101067051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Prochlorotrichaceae → Prochlorothrix → Prochlorothrix hollandica	712	Open in IMG/M
3300005456\|Ga0070678_101663312	Not Available	600	Open in IMG/M
3300005518\|Ga0070699_102185904	Not Available	505	Open in IMG/M
3300005545\|Ga0070695_100643416	Not Available	836	Open in IMG/M
3300005546\|Ga0070696_100983442	Not Available	704	Open in IMG/M
3300005549\|Ga0070704_102054323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia heleia	531	Open in IMG/M
3300005616\|Ga0068852_102373129	Not Available	551	Open in IMG/M
3300005843\|Ga0068860_102019440	Not Available	598	Open in IMG/M
3300005886\|Ga0075286_1040178	Not Available	637	Open in IMG/M
3300006904\|Ga0075424_102610656	Not Available	528	Open in IMG/M
3300010371\|Ga0134125_10872957	Not Available	988	Open in IMG/M
3300010371\|Ga0134125_13091467	Not Available	504	Open in IMG/M
3300010375\|Ga0105239_10490701	Not Available	1396	Open in IMG/M
3300010396\|Ga0134126_12263853	Not Available	592	Open in IMG/M
3300010399\|Ga0134127_10424488	Not Available	1322	Open in IMG/M
3300010400\|Ga0134122_12891236	Not Available	534	Open in IMG/M
3300011003\|Ga0138514_100013239	All Organisms → cellular organisms → Bacteria	1385	Open in IMG/M
3300011119\|Ga0105246_10094523	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	2162	Open in IMG/M
3300011119\|Ga0105246_12482422	Not Available	510	Open in IMG/M
3300012668\|Ga0157216_10394549	Not Available	614	Open in IMG/M
3300012882\|Ga0157304_1096821	Not Available	532	Open in IMG/M
3300012913\|Ga0157298_10364793	All Organisms → cellular organisms → Archaea	537	Open in IMG/M
3300012938\|Ga0162651_100067362	Not Available	585	Open in IMG/M
3300012941\|Ga0162652_100000855	All Organisms → cellular organisms → Archaea	2362	Open in IMG/M
3300012951\|Ga0164300_10807917	Not Available	582	Open in IMG/M
3300012955\|Ga0164298_10670443	Not Available	723	Open in IMG/M
3300012957\|Ga0164303_10096839	All Organisms → cellular organisms → Archaea	1450	Open in IMG/M
3300012958\|Ga0164299_10600670	Not Available	752	Open in IMG/M
3300012958\|Ga0164299_11245655	Not Available	566	Open in IMG/M
3300012960\|Ga0164301_10072608	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	1871	Open in IMG/M
3300012960\|Ga0164301_10848338	Not Available	704	Open in IMG/M
3300012961\|Ga0164302_10624813	All Organisms → cellular organisms → Archaea	785	Open in IMG/M
3300012961\|Ga0164302_11223060	Not Available	602	Open in IMG/M
3300012985\|Ga0164308_10440205	Not Available	1076	Open in IMG/M
3300012985\|Ga0164308_12129092	Not Available	523	Open in IMG/M
3300015077\|Ga0173483_10194775	Not Available	929	Open in IMG/M
3300015372\|Ga0132256_100031574	All Organisms → cellular organisms → Archaea	4797	Open in IMG/M
3300015373\|Ga0132257_102997634	Not Available	615	Open in IMG/M
3300018027\|Ga0184605_10104141	All Organisms → cellular organisms → Archaea	1255	Open in IMG/M
3300018028\|Ga0184608_10192065	Not Available	893	Open in IMG/M
3300018051\|Ga0184620_10013378	All Organisms → cellular organisms → Archaea	1911	Open in IMG/M
3300018051\|Ga0184620_10192229	Not Available	675	Open in IMG/M
3300018051\|Ga0184620_10203186	Not Available	659	Open in IMG/M
3300018056\|Ga0184623_10225166	Not Available	860	Open in IMG/M
3300018056\|Ga0184623_10239563	All Organisms → cellular organisms → Archaea	829	Open in IMG/M
3300018061\|Ga0184619_10090742	All Organisms → cellular organisms → Archaea	1366	Open in IMG/M
3300018061\|Ga0184619_10111775	Not Available	1233	Open in IMG/M
3300018061\|Ga0184619_10187808	All Organisms → cellular organisms → Archaea	948	Open in IMG/M
3300018061\|Ga0184619_10516240	Not Available	526	Open in IMG/M
3300018061\|Ga0184619_10557256	Not Available	501	Open in IMG/M
3300018076\|Ga0184609_10359275	Not Available	679	Open in IMG/M
3300018920\|Ga0190273_12320108	Not Available	508	Open in IMG/M
3300019867\|Ga0193704_1042940	Not Available	897	Open in IMG/M
3300019868\|Ga0193720_1009890	Not Available	1321	Open in IMG/M
3300019868\|Ga0193720_1018685	Not Available	979	Open in IMG/M
3300019873\|Ga0193700_1008784	All Organisms → cellular organisms → Archaea	1601	Open in IMG/M
3300019875\|Ga0193701_1056451	Not Available	788	Open in IMG/M
3300019879\|Ga0193723_1025041	All Organisms → cellular organisms → Archaea	1815	Open in IMG/M
3300020006\|Ga0193735_1088573	Not Available	877	Open in IMG/M
3300020006\|Ga0193735_1121778	Not Available	708	Open in IMG/M
3300020006\|Ga0193735_1181640	Not Available	518	Open in IMG/M
3300020012\|Ga0193732_1084666	All Organisms → cellular organisms → Archaea	511	Open in IMG/M
3300020018\|Ga0193721_1033743	All Organisms → cellular organisms → Archaea	1352	Open in IMG/M
3300021078\|Ga0210381_10366870	Not Available	528	Open in IMG/M
3300021418\|Ga0193695_1016549	All Organisms → cellular organisms → Archaea	1522	Open in IMG/M
3300022694\|Ga0222623_10052476	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → environmental samples → uncultured crenarchaeote	1569	Open in IMG/M
3300022694\|Ga0222623_10125605	Not Available	999	Open in IMG/M
3300022694\|Ga0222623_10148096	Not Available	914	Open in IMG/M
3300022694\|Ga0222623_10307394	Not Available	608	Open in IMG/M
3300025901\|Ga0207688_11060737	Not Available	512	Open in IMG/M
3300027717\|Ga0209998_10109074	Not Available	691	Open in IMG/M
3300031943\|Ga0310885_10878511	Not Available	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.35%
Host-Associated	Host-Associated	17.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.73%
Aquatic	Environmental → Aquatic	18.63%
Plants	Host-Associated → Plants	17.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.78%
Sediment	Environmental → Aquatic → Sediment	17.65%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.86%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.94%
Freshwater	Environmental → Aquatic → Freshwater	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	17.65%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	17.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	36.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	12.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	8.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.90%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.98%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012882	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062590_1024741761	3300004157	Soil	MRTQLVLIVPLLAAMIGMLAIVGLNTVDANMTSSEGNYTSGTNATSGNMTSGNATSDNMAGP
Ga0063356_1009550623	3300004463	Arabidopsis Thaliana Rhizosphere	MRTQLVLMIPLLAAAIGMLAIVGMNSVNAQNMSTPETNMTAGSSMANLTMGGNMTGAGNMTNE
Ga0063356_1023766383	3300004463	Arabidopsis Thaliana Rhizosphere	LIIPILAAMIGMIAIVGLNSANAQNMSTPEGNMTSGNATSGNATSGNMAGPTNMTSP*
Ga0062595_1009454721	3300004479	Soil	MRKQLVLIIPILAAIIGMLAIVGLNSVNAQNMTTPETNYTGGTNATSGNMTSGNATS
Ga0062595_1013290482	3300004479	Soil	MTKQLVLIIPILAAMIGMFAIVGLNSVNAQNMSTPETNMSRMSNATMGGNMTSGNATSENMADPLNITTP*
Ga0062591_1004394322	3300004643	Soil	MRKQLVLIIPILAAMIGMVTIFRLNSVNAQNMSTPETNMTGMTNMTMDGNMTDGNATSGNMSGPTNMTSP*
Ga0062591_1009946761	3300004643	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMTTPETNYTGGTNATSGNMTIGNATSDNMAGPTNMTTP*
Ga0062591_1024279432	3300004643	Soil	MRTKLVLVISLLAEMMGMFAIVGVTFANAQNMSTPETNMTSGNATSGNMTSGNSS
Ga0062594_1005318911	3300005093	Soil	KAMRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMTTPETNYTGGTNATSGNMTSGNATSDNMAGPTNMTTP*
Ga0062594_1025009911	3300005093	Soil	MRKQLVLIIPILAAMIGMIAIVGVSSVNAQNMSTPETNMTGMTNANMSGNMTGNMTNSSSPMMNSTQ*
Ga0062594_1025373731	3300005093	Soil	MRTQSVLIIPILAAMIGMIAIVGLNSANAQNMSTPETNMTGMSNATMSGNMTGS
Ga0065704_102454291	3300005289	Switchgrass Rhizosphere	MRKQLALIIPILAAMIGMIAIVGLNSVNAQNMSTPEDNMTSGNATSGNATSGNMAGPTNMTSP*
Ga0065712_100545401	3300005290	Miscanthus Rhizosphere	MRKQLVLIIPILAAMIGMLAIVGLNSAXAQNMSTPETNMTGGNATMSGNMTGGNATMSGNMTGPTNMTSS*
Ga0065715_108950592	3300005293	Miscanthus Rhizosphere	MRKQLVLIIPILAAMIGMLAIVGLNSANAQNMSTPETNMTGGNATMSGNMTGGNATMSGNMTGPTNMTSS*
Ga0070674_1010670511	3300005356	Miscanthus Rhizosphere	MRTQLVLIIPILAAMIGMIAIVGLNSANAQNVSTPETNMTGETNATMGGNMTSSDNMTTSSGS
Ga0070708_1018692591	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	AIVGATYANAQNMSTPETNMSNMSNATMSGNMTSGNSSYLGPTNMTSP*
Ga0070678_1016633122	3300005456	Miscanthus Rhizosphere	MRKQLVLIIPLIAAMIGMLVIVGLNSANAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMAGSTNLTSP*
Ga0070699_1021859041	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRKQLVLIIPILAAMIGMLAIVGLNSANAQNMSTPETNMTGGNATMSGNMTGPTNMTSS*
Ga0070695_1006434162	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRKQLVLIIPILAAMIGMLAIVGLNSANAQNMSTPETNMTGGNATMSSNMTGPTNMTSS*
Ga0070696_1009834421	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRKQLVLIIPILAAMIGMLAIVGLNSANAQNMSASETNMTGGTNMTNSTMAGNMTSSGNM
Ga0070696_1017517572	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MRTKLVLVISLLAAMMGMFAIVGATYANAQNMSTPETNMSNMSNATMSGNMTSGNSSYLGPTNMTSP*
Ga0070704_1020543231	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MIGMLAIVGLNSANAQNMSTPETNMTGGNATMSGNMTGGNATMSGNMTGGNATM
Ga0068852_1023731291	3300005616	Corn Rhizosphere	MRKQLVLIIPILAAIIGMLAIVGLNSVNAQNMTTPETNYTGGTNATSGNMTSGNATSDNMAGPTNLTSP*
Ga0068860_1020194402	3300005843	Switchgrass Rhizosphere	MRKQLVLIIPLIAAMIGMLAIVGLNSANAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGPTNMTSP*
Ga0075286_10401781	3300005886	Rice Paddy Soil	MRKQLVLIIPILAALIGMFAIAGLNAVNAQNMSTPETNMTSGNMTSGNSSYLGPTNLTSSP*
Ga0075424_1026106562	3300006904	Populus Rhizosphere	MRRQLVFIIPILAAMIGMIAIVGLNSANAQSMSTQETNATSMSNATMGGNMTGSENMT
Ga0134125_108729572	3300010371	Terrestrial Soil	MRKQLVLIIPLIAAMIGMFAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTAPTNMTSP*
Ga0134125_130914671	3300010371	Terrestrial Soil	MRKQLVLIIQILAAMIGMIAIVGLNSVNAQNMSTPEGNMTSGNATSENMTSGNMAGPTNMTSP*
Ga0134128_118428052	3300010373	Terrestrial Soil	PILAAMIGMFAIAGLNSANGQNMSTPEGNMTSGNATSGNMTSGNTSYLGPTNITSP*
Ga0105239_104907012	3300010375	Corn Rhizosphere	MKKQLVLIIPLIAAMIGMLAIVGLNSANAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGPTNMTSP*
Ga0134126_122638531	3300010396	Terrestrial Soil	MRKQLALIIPILAAMIGMIAIVGLNSVNAQNMSTPEGNMTSGNATSENMTSGNMAGPTNMTSP*
Ga0134127_104244882	3300010399	Terrestrial Soil	MRKQLVLIIPILAAMIGMIAIVGLNTVDANMTSSGGNYTSGANATSGNMTSGNASDN
Ga0134122_107002891	3300010400	Terrestrial Soil	MRKQLVLIIPILAAMIGMVTIFRLNSVNAQNMSTPETNMTGMTNMTMDGNMTDG
Ga0134122_128912361	3300010400	Terrestrial Soil	MRKQLVLIILILAAIIGMLAIVGLNSVNAQNMTTPETNYTGGTNATSGNRKSGNATSDNM
Ga0138514_1000132392	3300011003	Soil	MRKQLVLIIPLLAAMIGMFAIVGLNSVNAQNMSTPETNMTDGNATMGGNMTSGNANMGGDMTAQTNMTSP*
Ga0105246_100945233	3300011119	Miscanthus Rhizosphere	MRKQLVLIIPILAAMIGMLAVVGLNSVNAQNMSTPETNMTGGNATMSGNMTGGNA
Ga0105246_124824221	3300011119	Miscanthus Rhizosphere	MRTQLVFIIPILAAMIGMIAIVGLYSANAQNVSTPETNMTGGTNATMGGNMTSSDNMTTSSG
Ga0157216_103945492	3300012668	Glacier Forefield Soil	MRKQLVLIIPILAAMIGMFAIVGLNSVNGQNMSTPETNMTAGTNATMGGNMTSGNATSNNMAGPTNMTSSP*
Ga0157304_10968211	3300012882	Soil	VRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTGSENMT
Ga0157298_103647932	3300012913	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNAT
Ga0162651_1000673621	3300012938	Soil	MRKQLVLIIPILAAMIGMIAIIGLNSVNAQNMSTPEGNMTSGNATSGNMTGPTNMTSP*
Ga0162652_1000008554	3300012941	Soil	MRKQLVLIIPILAAMIGMLTIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGPTNMTSP*
Ga0164300_101523643	3300012951	Soil	MRTQLAFIIPILAAMIGMIAIVGLNSANAQNVSTPETNMTGGTNATMGGNMT
Ga0164300_108079171	3300012951	Soil	MRKQLILIIPILAAMIGMIAIVGLNSVNAQNMSTPETNMTGGTNASMGGNMTSSDNT
Ga0164298_106704431	3300012955	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTSPTNMTTP*
Ga0164303_100968392	3300012957	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMSGNMTSPTNMTTS*
Ga0164303_113434371	3300012957	Soil	MRKQLVLIIPILAAMIGMFAIAGLNSVNGQNMSTPEGNMTSGNATSGNMTSGNSSYLGPTNMTSP*
Ga0164299_106006702	3300012958	Soil	MRTKLVFIIPILAAMIGMIAIVGLNSANAQNVSTPETNMTGGTNATMGGNMTSSDN
Ga0164299_112456551	3300012958	Soil	MRKQFVLIIPLLAAMIGMFAIVGLNSANAQNMSTPETNMTSGNETSGNMTSGNMAGLT
Ga0164301_100726081	3300012960	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMSGGNATMGGNMTSGNATMGGN
Ga0164301_108483381	3300012960	Soil	QLVLIIPILAAMIGMLAIVGLDSANAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTSPTNMTTS*
Ga0164302_104473512	3300012961	Soil	MRKQLVLIIPILAAMIGMIATVGLNTANAQNMSTPETNMTSMSNSTMGEDMTGQIHQVQ*
Ga0164302_106248131	3300012961	Soil	MTKQLVLIIPILAAMLGMIAIIGLNSVNAQNMSTPETNMTSGNATSGNMTSGNATSGNMAGPTNMT
Ga0164302_112230602	3300012961	Soil	IPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMSGNMTSGNATMSGNMTSPTNMTTS*
Ga0164308_104402052	3300012985	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMAGPTNMTSP*
Ga0164308_121290921	3300012985	Soil	MRTQLVLIIPIIAAMIGMIAIVGLNSANAQNMSTPETNMTGMSNATMSGNMTGSEN
Ga0173483_101947751	3300015077	Soil	KQLVLIIPILAAMIGMFAIVGLSSANAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMAGSTNMTSP*
Ga0132256_1000315746	3300015372	Arabidopsis Rhizosphere	MKTQLVFIIPILAAMIGMIAIVGLNSVNAQNASMPETNMSDMSNATMGGNMTGSE
Ga0132256_1012250271	3300015372	Arabidopsis Rhizosphere	MRTKLVLVISLLAAMMGMFAIVGATYANAQNMSTPETNMSNMSNATMSGNMTSGNSSYLG
Ga0132257_1029976341	3300015373	Arabidopsis Rhizosphere	MRTKLVFIIPILAAMIGMIAIVGLNSVNAQNTSMPETNMTGGTNSTMGGGITGNMTNSSSPMMTNSS*
Ga0184605_101041413	3300018027	Groundwater Sediment	MRKQLVLIIPILAAMIGMIAIVGLDSVNAQNMSTPETNMTSGNATSGNMTGSTNMTTP
Ga0184608_101920651	3300018028	Groundwater Sediment	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGPTNMTSP
Ga0184620_100133783	3300018051	Groundwater Sediment	MRKQLVLIIPILAAMIGMFAITGLNAVNAQNMSTPETNMTSENATSGNMTSGN
Ga0184620_101922292	3300018051	Groundwater Sediment	MRKQLVLIIPLLAAMIGMFAIVGLNSANAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGP
Ga0184620_102031861	3300018051	Groundwater Sediment	MRKQLVLIIPILAAMIGMIAIVGLNSVNAQNMSTPEGNMTSGNATSGNMTGPINMTSP
Ga0184623_102251662	3300018056	Groundwater Sediment	MRRQIVLIIPLLAAMVSVLAFVGLNTVNAQNMSIPETNMTSLTNATIGNMTSGNMTSGNMTSGNMTSGNMTSP
Ga0184623_102395631	3300018056	Groundwater Sediment	MRTQLVLIIPILAAMTGMFAIIGLNSVNAQNMSIPETNMTSLTNATLDGNMTSGNMTSGNMTVDLNMTTP
Ga0184619_100907422	3300018061	Groundwater Sediment	MISVILIALIIPILAAMIGMIAIVGLNSVNAQNMSTPEGNMTSGNMTSGNATSGNMAGPTNMTSP
Ga0184619_101117753	3300018061	Groundwater Sediment	MKKQLVLVIPLLAALIGMIAIVGLNTVNAQNMSTPETNMTSMSNATMGGNMTGSENM
Ga0184619_101878082	3300018061	Groundwater Sediment	MRKQLVLIIPILAAMIGMIAIVGLDSVNAQNMSTPETNMTSGNATSGNMTSGNMTGSTNMTTL
Ga0184619_105162401	3300018061	Groundwater Sediment	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTAPTNMTSP
Ga0184619_105572561	3300018061	Groundwater Sediment	MRKQLVLIIPILAAIIVVFAIVGLNSVNAENMSTPETNMTSGTNATMEGNMTSGNATSGNMAGPTNMTTP
Ga0184609_103592752	3300018076	Groundwater Sediment	MRKQLVLIIPILAAMIGMIAIVGLNTVNAQNMSTPESNYTIGTNATSGNMAGPTNMTSSP
Ga0190273_123201081	3300018920	Soil	MRKQLVLAIPLLAAMIGMFAIVGLNSVNAQNMSAPESNMTGGNTTIGNITGGNVGNMTSPTNMTSPTNMTTP
Ga0193704_10088243	3300019867	Soil	MRKQLVLIIPILAALIGMFAIAGLNAVNAQNMSTPETNMTSGNATSGNMTSGNSSYLGPTNLTSSP
Ga0193704_10429402	3300019867	Soil	MKKQLVLIIPILSVMIGMLAIVGLNSVNAQNVSAPETNMTGGTNMTNSTMAGNMTSSGNMTTTSGSMYGK
Ga0193720_10098901	3300019868	Soil	MRKQLVLIIPILAAMIGMLAIVGLNAVNAQNMSTPETNMTGGNATSGNMTSSDNMTTSSG
Ga0193720_10186851	3300019868	Soil	MRKQLVLIIPLLAAMIGMFAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTAPTNMTSP
Ga0193705_10181522	3300019869	Soil	MIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGPTNMTSP
Ga0193700_10087842	3300019873	Soil	MRKQLVLIIPILAAMIGMIAIVGLNSVNAQNMSTPEGNMTSGNMTSGNATSGNMAGPTNMTSPYQLSVT
Ga0193700_10623502	3300019873	Soil	MRKQLVLIIPLLAAMIGMLAIVGLNSVNAQNVSAPETNMTGGNATMGGNMTGG
Ga0193701_10564511	3300019875	Soil	MRKQLVLIIPILAAMIGMIAIIGLNSVNAQNMSTPEGNMTSGNMTSGNATSGNMAGPTNMTSP
Ga0193723_10250412	3300019879	Soil	MRKQLVLIIPILAAMIGMIAIVGLNSVNAQNMSTPEGNMTSGNATSGNMAGPTNMTSP
Ga0193735_10885731	3300020006	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTSGNATMGGNMTSGNATMGGNMTAPTNMTSP
Ga0193735_11217781	3300020006	Soil	MRKQLVLIIPILAAMIGMIAIVGLNFVNAQNMSTPEGNMTSGNATSGNMAGPTNMTSP
Ga0193735_11816401	3300020006	Soil	MRTQLVLIIPLLAAIVSVLAVVGLNSVNAQNMSTPETNMTSETNATMGGNMTGTGNM
Ga0193757_10073452	3300020008	Soil	MIGMSAIVGPNSVNAQNMSTPETNMTAGTNATMGGNMTSGNATSNNMAGPTNMTSSP
Ga0193732_10846662	3300020012	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGTNMTNSTMTGNMTSSGNMTT
Ga0193721_10337432	3300020018	Soil	RKQLVLIIPILAAMIGMIAIIGLNSVNAQNMSTPEGNMTSGNATSGNMAGPTNMTSP
Ga0193721_10435612	3300020018	Soil	MKKQLVLVIPLLAALIGMIAIVGLNTVNAQNMSTPETNMTSGNATSGNMTSGNSSYLGPT
Ga0210381_103668702	3300021078	Groundwater Sediment	MRKQLVLIIPLIAAMIGMFTIVGLNSANAQNMSTPETNMTSMSNATMGGNMTGSENMTN
Ga0193695_10165492	3300021418	Soil	MRKQLVLIIPILAAMIGMIAIIGLNSVNAQNMSTPEGNMTSGNATSGNMAGPTNMTSP
Ga0222623_100524762	3300022694	Groundwater Sediment	MKKQLVLIIPILAAMLGMLAVLGVNSVNAQNMSTPETNMTGGTNATMGGNMTSGNATSGNMAGPTNMTSP
Ga0222623_101256051	3300022694	Groundwater Sediment	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTGGNATMGGNMTGPTNMTSP
Ga0222623_101480961	3300022694	Groundwater Sediment	MRTQLVLIIPLLAAMIGMIAILGLSSVNSQNMSTPESNMTSGTNMTNSTMGGNMTT
Ga0222623_103073941	3300022694	Groundwater Sediment	MRTQLVLIVPLLAAMLGMLAIVGLNTVDANMTSAKGNYTSGTNATSGNMTSGNATSGNIA
Ga0222622_105561952	3300022756	Groundwater Sediment	RKAMRKQLVLIIPILAAMIGMFAIAGLNAVNAQNMSTPETNMTSGNATSGNMTSGNSSYLGPTNLTSSP
Ga0207688_110607371	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRKQLVLIIPILAAMIGMLAIVGLNSVNAQNMSTPETNMTGGNATMGGNMTGSENMTNSS
Ga0209998_101090741	3300027717	Arabidopsis Thaliana Rhizosphere	MRKQLVLIIPILAAMIGMIAIVGLNTVDANMTSSGGNYTSGANATSGNMTSGNASDNMAGPTNMTTP
Ga0307312_105584821	3300028828	Soil	MKKQLVLVIPLLAALIGMIAIVGLNTVNAQNMSTPETNMTSGNATSGNMTSGNSSYLGPTNLTSSP
Ga0307277_103661421	3300028881	Soil	VFFFKDKAMRKQLVLIIPILAALMGMFAIAGLNAVNAQNMSTPETNMTSGNATSGNMTSGNSSYLGPTNLTSSP
Ga0310885_108785111	3300031943	Soil	MRKQLVLIIPILAAMIGMLAIVGLNSANAQNMSTPETNMTGGNATMGGNMTSGNATMGGNMTGPTNMTTS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100506

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences