Metagenome / Metatranscriptome Family F100486

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100486
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	43 residues
Representative Sequence	ARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRIVPNKASA
Number of Associated Samples	83
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.039 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.216 % of family members)
Environment Ontology (ENVO)	Unclassified (37.255 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.039 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12850	Metallophos_2	50.00
PF02687	FtsX	8.82
PF03551	PadR	5.88
PF12704	MacB_PCD	2.94
PF00072	Response_reg	0.98
PF00206	Lyase_1	0.98
PF06739	SBBP	0.98
PF03683	UPF0175	0.98
PF14559	TPR_19	0.98
PF07963	N_methyl	0.98
PF02661	Fic	0.98
PF13185	GAF_2	0.98
PF04237	YjbR	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	5.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	5.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	5.88
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.98
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	54.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	19.61 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15.69 %
Unclassified	root	N/A	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.61 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	11.76 %
Unclassified	root	N/A	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.61 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11.76 %
Unclassified	root	N/A	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.61 %
Unclassified	root	N/A	1.96 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	19.61 %
Unclassified	root	N/A	1.96 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001089\|JGI12683J13190_1012885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300002245\|JGIcombinedJ26739_101873529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300005167\|Ga0066672_10768954	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300005332\|Ga0066388_101429384	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300005467\|Ga0070706_102165369	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300005537\|Ga0070730_10200423	All Organisms → cellular organisms → Bacteria	1332	Open in IMG/M
3300005556\|Ga0066707_10997826	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005559\|Ga0066700_10625189	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300005568\|Ga0066703_10056284	All Organisms → cellular organisms → Bacteria → Acidobacteria	2217	Open in IMG/M
3300005568\|Ga0066703_10819870	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005575\|Ga0066702_10705188	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300005586\|Ga0066691_10122913	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300005586\|Ga0066691_10354643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	868	Open in IMG/M
3300005598\|Ga0066706_10460374	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1013	Open in IMG/M
3300005764\|Ga0066903_100300504	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2539	Open in IMG/M
3300006052\|Ga0075029_100226530	All Organisms → cellular organisms → Bacteria	1174	Open in IMG/M
3300006059\|Ga0075017_100342344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1112	Open in IMG/M
3300006102\|Ga0075015_100884512	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300006954\|Ga0079219_10301713	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300007076\|Ga0075435_101551293	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300007258\|Ga0099793_10117279	All Organisms → cellular organisms → Bacteria → Acidobacteria	1242	Open in IMG/M
3300007258\|Ga0099793_10325004	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300009089\|Ga0099828_10905422	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300009089\|Ga0099828_11393809	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300010048\|Ga0126373_12635917	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300010320\|Ga0134109_10048770	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1397	Open in IMG/M
3300010336\|Ga0134071_10384921	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300010359\|Ga0126376_11597847	All Organisms → cellular organisms → Bacteria → Acidobacteria	684	Open in IMG/M
3300010360\|Ga0126372_10632915	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300010361\|Ga0126378_10807298	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300010361\|Ga0126378_11939468	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300010361\|Ga0126378_12889235	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300010361\|Ga0126378_13450478	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300010364\|Ga0134066_10051528	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300010398\|Ga0126383_13485835	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300011269\|Ga0137392_10300963	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1326	Open in IMG/M
3300011269\|Ga0137392_10780407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	790	Open in IMG/M
3300011270\|Ga0137391_10641511	Not Available	887	Open in IMG/M
3300012096\|Ga0137389_10090534	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2410	Open in IMG/M
3300012198\|Ga0137364_10578281	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	846	Open in IMG/M
3300012199\|Ga0137383_10348937	All Organisms → cellular organisms → Bacteria → Acidobacteria	1084	Open in IMG/M
3300012201\|Ga0137365_10352684	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300012202\|Ga0137363_10908774	All Organisms → cellular organisms → Bacteria → Acidobacteria	747	Open in IMG/M
3300012202\|Ga0137363_11011341	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300012203\|Ga0137399_10239309	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300012203\|Ga0137399_11622018	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300012205\|Ga0137362_10109312	All Organisms → cellular organisms → Bacteria → Acidobacteria	2335	Open in IMG/M
3300012205\|Ga0137362_11004845	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300012206\|Ga0137380_11056234	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300012207\|Ga0137381_10078495	All Organisms → cellular organisms → Bacteria → Acidobacteria	2769	Open in IMG/M
3300012208\|Ga0137376_10365639	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1253	Open in IMG/M
3300012208\|Ga0137376_10458374	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300012209\|Ga0137379_10081373	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3115	Open in IMG/M
3300012209\|Ga0137379_10239813	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1727	Open in IMG/M
3300012357\|Ga0137384_10045565	All Organisms → cellular organisms → Bacteria	3623	Open in IMG/M
3300012361\|Ga0137360_10727005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300012362\|Ga0137361_10093341	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2602	Open in IMG/M
3300012363\|Ga0137390_11173392	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300012683\|Ga0137398_10136029	Not Available	1583	Open in IMG/M
3300012683\|Ga0137398_10563310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300012685\|Ga0137397_10051233	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2963	Open in IMG/M
3300012918\|Ga0137396_10571095	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300012922\|Ga0137394_10708345	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300012923\|Ga0137359_10202076	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1775	Open in IMG/M
3300012923\|Ga0137359_11093009	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300012927\|Ga0137416_10032048	All Organisms → cellular organisms → Bacteria → Acidobacteria	3513	Open in IMG/M
3300012927\|Ga0137416_11814991	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300012930\|Ga0137407_11989836	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012975\|Ga0134110_10500866	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300015264\|Ga0137403_10504304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1081	Open in IMG/M
3300017955\|Ga0187817_10967647	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300018431\|Ga0066655_10615239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300018468\|Ga0066662_11551756	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300020199\|Ga0179592_10397470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300020579\|Ga0210407_10388811	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300021088\|Ga0210404_10037377	All Organisms → cellular organisms → Bacteria → Acidobacteria	2215	Open in IMG/M
3300021420\|Ga0210394_10560821	All Organisms → cellular organisms → Bacteria → Acidobacteria	1004	Open in IMG/M
3300021559\|Ga0210409_10949188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300021560\|Ga0126371_11659060	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300026285\|Ga0209438_1023988	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2036	Open in IMG/M
3300026305\|Ga0209688_1096051	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300026315\|Ga0209686_1075683	All Organisms → cellular organisms → Bacteria → Acidobacteria	1194	Open in IMG/M
3300026325\|Ga0209152_10173789	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300026332\|Ga0209803_1014693	All Organisms → cellular organisms → Bacteria → Acidobacteria	4009	Open in IMG/M
3300026508\|Ga0257161_1115236	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300026523\|Ga0209808_1019781	All Organisms → cellular organisms → Bacteria → Acidobacteria	3347	Open in IMG/M
3300026529\|Ga0209806_1018082	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3654	Open in IMG/M
3300026529\|Ga0209806_1200233	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300026538\|Ga0209056_10158165	All Organisms → cellular organisms → Bacteria → Acidobacteria	1722	Open in IMG/M
3300026538\|Ga0209056_10398295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300027645\|Ga0209117_1178779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300027678\|Ga0209011_1029952	All Organisms → cellular organisms → Bacteria → Acidobacteria	1733	Open in IMG/M
3300028536\|Ga0137415_10607414	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300030991\|Ga0073994_10058570	All Organisms → cellular organisms → Bacteria → Acidobacteria	3416	Open in IMG/M
3300031720\|Ga0307469_10386633	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1189	Open in IMG/M
3300031744\|Ga0306918_10014301	All Organisms → cellular organisms → Bacteria	4616	Open in IMG/M
3300031753\|Ga0307477_11101881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300031820\|Ga0307473_10761599	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300031912\|Ga0306921_11718276	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300032180\|Ga0307471_101450803	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300032205\|Ga0307472_100050884	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2580	Open in IMG/M
3300032205\|Ga0307472_100706859	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.10%
Aquatic	Environmental → Aquatic	3.92%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.10%
Sediment	Environmental → Aquatic → Sediment	2.94%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.25%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	19.61%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001089	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12683J13190_10128851	3300001089	Forest Soil	SIHRARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRIVPNKASA*
JGIcombinedJ26739_1018735292	3300002245	Forest Soil	DGKQYIGVEFISPETNFWHMQFPIPGSKPLRRVGPTKVTA*
Ga0066672_107689542	3300005167	Soil	CRVVSIHRARDGKQYVGVEFLSPETNFWHMQFPIPGAKPLRRVVPNKASA*
Ga0066388_1014293843	3300005332	Tropical Forest Soil	GKQYVGVEFLCAETNFWHMQFPIPGAKPLRRVVPKKVSA*
Ga0070706_1021653692	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RDSKQYVGVEFLSPETNFWHMQFPIPGAKPLRRVLPNKASA*
Ga0070730_102004231	3300005537	Surface Soil	ECRVVSIHRARDSKQYIGVEFLSPETNFWHMQFPVPGQKPLRRVLPNKASA*
Ga0066707_109978261	3300005556	Soil	KQYVGVEFNSPEMNFWHMQFPTPGAKPLRRIFPNKVSA*
Ga0066700_106251891	3300005559	Soil	HRARDGKQYVGVEFNSPEMNFWHMQFPTPGAKPLRRIVPNKVSA*
Ga0066703_100562844	3300005568	Soil	DGKQYIGVEFISPETNFWHMQFPIPGSKPLRRVGPTKVSA*
Ga0066703_108198702	3300005568	Soil	RARDGKQYVGVEFNSPEMNFWHMQFPTPGAKPLRRIFPNKVSA*
Ga0066702_107051882	3300005575	Soil	DSKQYVGVEFLSPETNFWHMQFPAPGAKPLRRVLPNKASA*
Ga0066691_101229132	3300005586	Soil	KQYIGVEFVSPETNFWHMQFPIPGSRPLRRILPTKVSA*
Ga0066691_103546433	3300005586	Soil	HRARDGKQYVGVEFNSPEMNFWHMQFPTPGAKPLRRIFPNKVSA*
Ga0066706_104603743	3300005598	Soil	IHRARDGKQYVGVEFNSPEMNFWHMQFPTPGAKPLRRIFPNKVSA*
Ga0066903_1003005041	3300005764	Tropical Forest Soil	GVEFLSLETNFWHMQFPIPGAKPLRRVLPNKASA*
Ga0075029_1002265302	3300006052	Watersheds	IGVEFISPETNFWHMQFPIPGSKPLRRIVPNKASA*
Ga0075017_1003423441	3300006059	Watersheds	IGVEFISPETNFWHMQFPIPGSKPLRRIIPNKASA*
Ga0075015_1008845121	3300006102	Watersheds	CRVVSIHRARDGKQYIGVEFISPETNFWHMQFPIPGSKPLRRIVPNKASA*
Ga0079219_103017131	3300006954	Agricultural Soil	DSKQYVGVEFLSPETNFWHMQFPIPGTKPLRRVVPSKASA*
Ga0075435_1015512932	3300007076	Populus Rhizosphere	RDSKQYVGVEFLSPETNFWHMQFPIPGAKPLRRVLPNKVSA*
Ga0099793_101172793	3300007258	Vadose Zone Soil	YIGVEFISPEMNFWHMQFPIPGAKPLRRIVPNKVSA*
Ga0099793_103250041	3300007258	Vadose Zone Soil	KQYIGVEFVSPETNFWHMQFPIPGSKPLRRVGPNKVSA*
Ga0099828_109054222	3300009089	Vadose Zone Soil	GVEFISPETNFWHMQFPIPGAKPLRRMVPNKISA*
Ga0099828_113938092	3300009089	Vadose Zone Soil	KQYLGVEFLSPETNFWHMQFPLPGAKPMRRAVPTKASA*
Ga0126373_126359171	3300010048	Tropical Forest Soil	SKQYVGVEFLSAEANFWHMQFPSPGAKPMRRVLPDKASA*
Ga0134109_100487704	3300010320	Grasslands Soil	VSIHRARDNKQYVGVEFLSPEANFWHMQFPAPGAKPQRRVLPDKASA*
Ga0134071_103849211	3300010336	Grasslands Soil	QYLGVEFLSPETNFWHMQFPLPGAKPLRRAVPTKASA*
Ga0126376_115978471	3300010359	Tropical Forest Soil	GKQYIGVEFLYPETNFWHMQFPKPGTKPLRRVLPTKASA*
Ga0126372_106329151	3300010360	Tropical Forest Soil	GKQYVGVEFLSPETNFWHMQFPIPGAKPLRRTVPKKVSA*
Ga0126378_108072983	3300010361	Tropical Forest Soil	DSKQYVGVEFLSAEANFWHMQFPSPGAKPMRRVLPDKASA*
Ga0126378_119394682	3300010361	Tropical Forest Soil	VATHHARDGKQYVGVEFLSPETNFWHMQFPKPGTKPLRRVLQTKASA*
Ga0126378_128892352	3300010361	Tropical Forest Soil	RDSKQYVGVEFISPETNFWHMQFPIPGTKPLRRVVPSKASA*
Ga0126378_134504782	3300010361	Tropical Forest Soil	ARDGKQYIGVEFLSPETNFWHMQFPIPGTKPLRRVLPGKASGVA*
Ga0134066_100515283	3300010364	Grasslands Soil	HRARDGKQYVGVEFLSPETNFWHMRFPVPGAKPLRRVLPNKASA*
Ga0126383_134858351	3300010398	Tropical Forest Soil	MECRIVSVHRARDGKQYVGVEFLCAETNFWHMQFPIPGAKPLRRVVPKKVSA*
Ga0137392_103009632	3300011269	Vadose Zone Soil	ARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRIIPNKVSA*
Ga0137392_107804071	3300011269	Vadose Zone Soil	VVSIHRARDGKQYIGVEFISPEMNFWHMQFPIPGAKPLRRIVPNKASA*
Ga0137391_106415111	3300011270	Vadose Zone Soil	GKQYVGVEFVSPETNFWHMQFPIPGAKPMRRMMPSKVSA*
Ga0137389_100905341	3300012096	Vadose Zone Soil	YIGVEFVSPETNFWHMQFPIPGSRPLRRVGPTKVSA*
Ga0137364_105782811	3300012198	Vadose Zone Soil	QYIGVEFISPEIDFWHMQFPIPGSKPLRRIVPSKISA*
Ga0137383_103489373	3300012199	Vadose Zone Soil	VSVHRARDSKQYVGVEFLSPETNFWHMQFPIPGAKPLRRVLPNKVSA*
Ga0137365_103526841	3300012201	Vadose Zone Soil	QYIGVEFISPETNFWHMQFPIPGAKPLRRIVPNKVSA*
Ga0137363_109087742	3300012202	Vadose Zone Soil	RDGKQYVGVEFVSPETNFWHMQFPIPGAKPMRRMMPSKVSA*
Ga0137363_110113411	3300012202	Vadose Zone Soil	KQYVGVEFNSPETNFWHMQFPIPGARPLRRMLPNKVSA*
Ga0137399_102393094	3300012203	Vadose Zone Soil	RVVSIHRARDGKQYIGVEFVSPETNFWHMQFPIPGSKPLRRVGPTKITA*
Ga0137399_116220181	3300012203	Vadose Zone Soil	VSIHRARDGKQYVGVEFTSPETNFWHMQFPIPGARPLRRIVPNKISA*
Ga0137362_101093124	3300012205	Vadose Zone Soil	HRARDSKQYIGVEFISPETNFWHMQFPIPGAKPLRRMVPNKISA*
Ga0137362_110048452	3300012205	Vadose Zone Soil	VVSIHRARDGKQYVGVEFVSPETNFWHMQFPIPGAKPMRRMMPSKVSA*
Ga0137380_110562342	3300012206	Vadose Zone Soil	SIHRARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRTVPNKASA*
Ga0137381_100784951	3300012207	Vadose Zone Soil	QYVGVEFVSPETNFWHMQFPIPGTKPMRRMMPTKVSA*
Ga0137376_103656393	3300012208	Vadose Zone Soil	VVSIHRARDGKQYIGVEFISPEIDFWHMQFPIPGSKPLRRIVPSKISA*
Ga0137376_104583742	3300012208	Vadose Zone Soil	VVSIHRARDGKQYIGVEFISPEIDFWHMQFPIPGSKPLRRMVPSKISA*
Ga0137379_100813733	3300012209	Vadose Zone Soil	CRVVSIHRARDGKQYLGVEFISPEANFWHMQFPIPGAKPLRRIVPNKVSA*
Ga0137379_102398134	3300012209	Vadose Zone Soil	GVEFLSPETNFWHMQFPIPGAKPLRRVLPNKVSA*
Ga0137384_100455651	3300012357	Vadose Zone Soil	QYLGVEFLSPETNFWHMQFPLPGAKPMRRPVPTKASA*
Ga0137360_107270052	3300012361	Vadose Zone Soil	QYIGVEFISPETNFWHMQFPIPGAKPLRRMVPNKISA*
Ga0137361_100933415	3300012362	Vadose Zone Soil	ECRVVSIHRARDGKQYIGVEFVSPETNFWHMQFPIPGSKPLRRVGPTKVSA*
Ga0137390_111733922	3300012363	Vadose Zone Soil	SIHRARDSKQYIGVEFISPETNFWHMQFPIPGAKPLRRIVPNKVSA*
Ga0137398_101360292	3300012683	Vadose Zone Soil	ECRVVSIHRARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRMAPTKVSA*
Ga0137398_105633101	3300012683	Vadose Zone Soil	YIGVEFISPETNFWHMQFPIPGAKPLRRIVPNKASA*
Ga0137397_100512331	3300012685	Vadose Zone Soil	IHRARDGKQYIGVEFVSPETNFWHMQFPIPGSKPLRRVGPSKVSA*
Ga0137396_105710952	3300012918	Vadose Zone Soil	IHRARDGRQYIGVEFISPEINFWHMQFPISGSKPLRRIVPTKISA*
Ga0137394_107083452	3300012922	Vadose Zone Soil	VVSIHRARDGKQYIGVEFVSPETNFWHMQFPIPGSKPLRRVGPNKVSA*
Ga0137359_102020761	3300012923	Vadose Zone Soil	CRVVSIHRARDGKQYIGVEFVSPETNFWHMQFPIPGSRPLRRLGPTKVSA*
Ga0137359_110930091	3300012923	Vadose Zone Soil	RVVSIHRARDGKQYIGVEFISPETNFWHMQFPIPGARPLRRIVPNKVSA*
Ga0137416_100320481	3300012927	Vadose Zone Soil	RVVSIHRARDGKQYIGVEFISPETNFWHMQFPIPGSKPLRRIVPNKVSA*
Ga0137416_118149911	3300012927	Vadose Zone Soil	RARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRMAPTKVSA*
Ga0137407_119898361	3300012930	Vadose Zone Soil	HRARDGKQYIGVEFVSPETNFWHMQFPIPGSRPLRRVGPTKVSA*
Ga0134110_105008662	3300012975	Grasslands Soil	CRVVSIHRARDGKQYVGVEFLAPETNFWHMQFPAPGAKPLRRVLPNKASA*
Ga0137403_105043042	3300015264	Vadose Zone Soil	IGVEFISPETNFWHMQFPIPGARPLRRMVPKKVSA*
Ga0187817_109676471	3300017955	Freshwater Sediment	KQYIGVEFINPETNFWHMQFPIPGSKPMRRIVPDKASA
Ga0066655_106152392	3300018431	Grasslands Soil	IHRARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRTVPNKASA
Ga0066662_115517561	3300018468	Grasslands Soil	ARDGKQYIGVEFISPETNFWHMQFPIPGSKPIRRMVPSKASA
Ga0179592_103974701	3300020199	Vadose Zone Soil	CRVVSIHRARDGKQYIGVEFTSPEMNFWHMQFPIPGAKPLRRIVPNKVSA
Ga0210407_103888113	3300020579	Soil	HRARDGKQYIGVEFLSPETNFWHMQFPIPGSKPLRRPIPSKASA
Ga0210404_100373773	3300021088	Soil	QYIGVEFVSPETNFWHMQFPIPGSKPLRRAIPTKASA
Ga0210394_105608211	3300021420	Soil	IHRARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRMAPTKISA
Ga0210409_109491882	3300021559	Soil	DGKKYVGVEFTQPEMNFWHMQFPIPGAKPLRRIVPAKVSA
Ga0126371_116590601	3300021560	Tropical Forest Soil	IHRARDSKQYVGVEFLSPETNFWHMQFPIPGSKPLRRVLPNKVSA
Ga0209438_10239883	3300026285	Grasslands Soil	ARDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRIVPNKASA
Ga0209688_10960512	3300026305	Soil	MECRVVSIHRARDGKQYVGVEFLSPETNFWHMQFPIPGAKPLRRVLPNKASA
Ga0209686_10756833	3300026315	Soil	DNKQYVGVEFLSPEANFWHMQFPAPGAKPQRRVLPDKASA
Ga0209152_101737893	3300026325	Soil	CQVVSIHRARDGKQYVGAEFNSPEMNFWHMQFPTPGAKPLRRIFPNKVSA
Ga0209803_10146931	3300026332	Soil	SIHRARDGKQYVGVEFNSPEMNFWHMQFPIPGAKPLRRIFPNKASA
Ga0257161_11152362	3300026508	Soil	ARDGKQYIGVEFISPEMNFWHMQFPIPGAKPLRRIVPNKASA
Ga0209808_10197814	3300026523	Soil	ARDNKQYVGVEFLSPEANFWHMQFPAPGAKPQRRVLPDKASA
Ga0209806_10180823	3300026529	Soil	VGVEFNSPEMNFWHMQFPTPGAKPLRRIVPNKVSA
Ga0209806_12002331	3300026529	Soil	DGKQYIGVEFISPETNFWHMQFPIPGSKPLRRVGPTKVSA
Ga0209056_101581653	3300026538	Soil	GKQYVGVEFNSPEMNFWHMQFPTPGAKPLRRIAPNKVSA
Ga0209056_103982951	3300026538	Soil	RARDGKQYIGVEFISPETNFWRMQFPIPGAKPLRRVAPSKVSA
Ga0209117_11787791	3300027645	Forest Soil	YIGVEFISPEANFWHMQFPIPGAKPLRRLAPSKVSV
Ga0209011_10299524	3300027678	Forest Soil	RDGKQYIGVEFISPETNFWHMQFPIPGAKPLRRIVPNKASA
Ga0137415_106074142	3300028536	Vadose Zone Soil	CRVVSIHRARDGKQYVGVEFVSPETNFWHMQFPIPGAKPLRRILPNKVSA
Ga0073994_100585704	3300030991	Soil	RDGKQYIGVEFISPEMNFWHMQFPIPGAKPLRRIVPNKVSA
Ga0307469_103866333	3300031720	Hardwood Forest Soil	VVSIHRARDGKQYIGVEFVSPETNFWHMQFPIPGSKPLRRVGPTKVSA
Ga0306918_100143015	3300031744	Soil	CRVVSIHRARDSKQYVGVEFLSAEANFWHMQFPSPGAKPMRRVLPDKASA
Ga0307477_111018811	3300031753	Hardwood Forest Soil	TRIVSVHRARDGKQYIGVEFISPETNFWHMQFPIPGSKPLRRMIPNKASA
Ga0307473_107615991	3300031820	Hardwood Forest Soil	GKQYVGVEFNSPETNFWHMQFPIPGAKPLRRMLPNKVSA
Ga0306921_117182761	3300031912	Soil	VSIHRARDNKQYVGVEFLSPETNFWHMEFPTPGAKPLRRVLADKASA
Ga0307471_1014508031	3300032180	Hardwood Forest Soil	DGKQYIGVEFVSPETNFWHMQFPIPGSRPLRRVGPTKVSA
Ga0307472_1000508841	3300032205	Hardwood Forest Soil	GKQYIGVEFVSPETNFWHMQFPIPGSKPLRRVGPTKVSA
Ga0307472_1007068592	3300032205	Hardwood Forest Soil	SKQYVGVEFLSPETNFWHMQFPIPGAKPLRRVLPNKASA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100486

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences