Metagenome / Metatranscriptome Family F100462

Basic Information
Family ID	F100462
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	37 residues
Representative Sequence	NGIKFAFPTVQVAGEGEAATAAVAQRALELTQPAAA
Number of Associated Samples	78
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Bacteria (89.216 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (48.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.902 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.56% β-sheet: 0.00% Coil/Unstructured: 73.44%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01687	Flavokinase	6.86
PF06574	FAD_syn	6.86
PF13458	Peripla_BP_6	6.86
PF08448	PAS_4	4.90
PF00691	OmpA	1.96
PF12833	HTH_18	1.96
PF00239	Resolvase	0.98
PF12806	Acyl-CoA_dh_C	0.98
PF07642	BBP2	0.98
PF12762	DDE_Tnp_IS1595	0.98
PF09865	DUF2092	0.98
PF07690	MFS_1	0.98
PF09351	DUF1993	0.98
PF10009	DUF2252	0.98
PF00857	Isochorismatase	0.98
PF00884	Sulfatase	0.98
PF00083	Sugar_tr	0.98
PF01968	Hydantoinase_A	0.98
PF01425	Amidase	0.98
PF14850	Pro_dh-DNA_bdg	0.98
PF03992	ABM	0.98
PF14559	TPR_19	0.98
PF13701	DDE_Tnp_1_4	0.98
PF06445	GyrI-like	0.98
PF03060	NMO	0.98
PF02470	MlaD	0.98
PF12625	Arabinose_bd	0.98
PF05598	DUF772	0.98
PF06411	HdeA	0.98
PF06186	DUF992	0.98
PF01152	Bac_globin	0.98
PF00106	adh_short	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0196	FAD synthase	Coenzyme transport and metabolism [H]	13.73
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.98
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.98
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.98
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.98
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.98
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.20 %
Unclassified	root	N/A	9.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.20 %
Unclassified	root	N/A	9.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.22 %
Unclassified	root	N/A	9.80 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.98 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.49 %
Unclassified	root	N/A	9.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.98 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.71 %
Unclassified	root	N/A	9.80 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	20.59 %
Unclassified	root	N/A	9.80 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.94 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.98 %
Betaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis	0.98 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.59 %
Unclassified	root	N/A	9.80 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.98 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.98 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.98 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.98 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.59 %
Unclassified	root	N/A	9.80 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.98 %
Inquilinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus	0.98 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.59 %
Unclassified	root	N/A	9.80 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.98 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.98 %
Curtobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.59 %
Unclassified	root	N/A	9.80 %
unclassified Curtobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium	0.98 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.98 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.59 %
Unclassified	root	N/A	9.80 %
Curtobacterium sp. ER1/6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	0.98 %
Inquilinus limosus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	0.98 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Candidatus Accumulibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E01CEOVZ	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300004080\|Ga0062385_10990216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300004635\|Ga0062388_101174930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300005367\|Ga0070667_100159406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1986	Open in IMG/M
3300005435\|Ga0070714_100449668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1224	Open in IMG/M
3300005764\|Ga0066903_103995749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	791	Open in IMG/M
3300005921\|Ga0070766_11070779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300006028\|Ga0070717_11493394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Inquilinus → Inquilinus limosus	613	Open in IMG/M
3300007255\|Ga0099791_10363716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	694	Open in IMG/M
3300009012\|Ga0066710_101659297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	975	Open in IMG/M
3300009137\|Ga0066709_103724954	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300010359\|Ga0126376_10615519	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300010360\|Ga0126372_12754248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300010361\|Ga0126378_11312081	All Organisms → cellular organisms → Bacteria → Proteobacteria	818	Open in IMG/M
3300010361\|Ga0126378_11663980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300010361\|Ga0126378_11974041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	665	Open in IMG/M
3300010361\|Ga0126378_13230133	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300010376\|Ga0126381_101266373	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300010376\|Ga0126381_101464885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	987	Open in IMG/M
3300010376\|Ga0126381_103885999	Not Available	583	Open in IMG/M
3300010398\|Ga0126383_13559438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300011120\|Ga0150983_12968021	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012208\|Ga0137376_10771468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300012208\|Ga0137376_11079294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300012957\|Ga0164303_10794034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300016270\|Ga0182036_10504851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	958	Open in IMG/M
3300016357\|Ga0182032_10257109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1360	Open in IMG/M
3300016371\|Ga0182034_10060428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2551	Open in IMG/M
3300016404\|Ga0182037_12058332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300017943\|Ga0187819_10191346	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300018431\|Ga0066655_11357783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300018468\|Ga0066662_11502086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300020579\|Ga0210407_10978560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	646	Open in IMG/M
3300020582\|Ga0210395_10222836	All Organisms → cellular organisms → Bacteria → Proteobacteria	1416	Open in IMG/M
3300021168\|Ga0210406_11262294	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300021406\|Ga0210386_10542791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1005	Open in IMG/M
3300021441\|Ga0213871_10183219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	648	Open in IMG/M
3300021475\|Ga0210392_11081917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	601	Open in IMG/M
3300021560\|Ga0126371_11097453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	935	Open in IMG/M
3300021560\|Ga0126371_11188070	All Organisms → cellular organisms → Bacteria → Proteobacteria	900	Open in IMG/M
3300021560\|Ga0126371_11438758	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300021560\|Ga0126371_13745024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300021560\|Ga0126371_13940322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300022724\|Ga0242665_10094486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	877	Open in IMG/M
3300025910\|Ga0207684_11534746	Not Available	541	Open in IMG/M
3300027783\|Ga0209448_10068472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter	1194	Open in IMG/M
3300031040\|Ga0265754_1013881	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	678	Open in IMG/M
3300031231\|Ga0170824_103779464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300031231\|Ga0170824_103782841	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031474\|Ga0170818_111178892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1023	Open in IMG/M
3300031561\|Ga0318528_10294162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	871	Open in IMG/M
3300031572\|Ga0318515_10719610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	528	Open in IMG/M
3300031668\|Ga0318542_10336260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300031681\|Ga0318572_10289983	Not Available	966	Open in IMG/M
3300031708\|Ga0310686_111440181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300031708\|Ga0310686_117423899	Not Available	625	Open in IMG/M
3300031719\|Ga0306917_10525936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	929	Open in IMG/M
3300031724\|Ga0318500_10366819	Not Available	713	Open in IMG/M
3300031744\|Ga0306918_10195407	All Organisms → cellular organisms → Bacteria	1522	Open in IMG/M
3300031744\|Ga0306918_10559275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	896	Open in IMG/M
3300031751\|Ga0318494_10422731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	774	Open in IMG/M
3300031754\|Ga0307475_10762944	Not Available	769	Open in IMG/M
3300031771\|Ga0318546_11248485	Not Available	522	Open in IMG/M
3300031781\|Ga0318547_10641493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	659	Open in IMG/M
3300031792\|Ga0318529_10004100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4920	Open in IMG/M
3300031795\|Ga0318557_10135102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1110	Open in IMG/M
3300031805\|Ga0318497_10328660	All Organisms → cellular organisms → Bacteria → Proteobacteria	853	Open in IMG/M
3300031805\|Ga0318497_10643441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300031824\|Ga0307413_11825476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300031833\|Ga0310917_10396166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	938	Open in IMG/M
3300031879\|Ga0306919_10345181	All Organisms → cellular organisms → Bacteria → Proteobacteria	1136	Open in IMG/M
3300031879\|Ga0306919_10396494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1058	Open in IMG/M
3300031879\|Ga0306919_10626766	Not Available	829	Open in IMG/M
3300031890\|Ga0306925_11200703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	760	Open in IMG/M
3300031890\|Ga0306925_11766274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300031910\|Ga0306923_11362115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	749	Open in IMG/M
3300031912\|Ga0306921_10252567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2066	Open in IMG/M
3300031912\|Ga0306921_11041015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	921	Open in IMG/M
3300031941\|Ga0310912_10081086	All Organisms → cellular organisms → Bacteria	2356	Open in IMG/M
3300031941\|Ga0310912_10509268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	938	Open in IMG/M
3300031954\|Ga0306926_11528897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	769	Open in IMG/M
3300031954\|Ga0306926_12162997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	621	Open in IMG/M
3300031959\|Ga0318530_10093318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1190	Open in IMG/M
3300031959\|Ga0318530_10489999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300031962\|Ga0307479_12105956	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300032001\|Ga0306922_10650486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1113	Open in IMG/M
3300032001\|Ga0306922_12050479	Not Available	556	Open in IMG/M
3300032025\|Ga0318507_10475764	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300032035\|Ga0310911_10128218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1414	Open in IMG/M
3300032035\|Ga0310911_10811800	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300032043\|Ga0318556_10651141	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300032051\|Ga0318532_10288866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300032060\|Ga0318505_10458429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300032063\|Ga0318504_10199852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300032068\|Ga0318553_10072465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1727	Open in IMG/M
3300032068\|Ga0318553_10499767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300032076\|Ga0306924_10809838	All Organisms → cellular organisms → Bacteria → Proteobacteria	1043	Open in IMG/M
3300032094\|Ga0318540_10355702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300032180\|Ga0307471_101029132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	990	Open in IMG/M
3300032261\|Ga0306920_101496850	Not Available	964	Open in IMG/M
3300033289\|Ga0310914_10336283	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1364	Open in IMG/M
3300033417\|Ga0214471_10284943	All Organisms → cellular organisms → Bacteria → Proteobacteria	1346	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.06%
Host-Associated	Host-Associated	2.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.14%
Aquatic	Environmental → Aquatic	3.92%
Plants	Host-Associated → Plants	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.14%
Freshwater	Environmental → Aquatic → Freshwater	3.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	87.25%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	59.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300031040	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100462

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_05337930	2189573000	Grass Soil	IKFAFPTVSVTGDGEASAATAAVAQRGLELTHPAAAAAE
Ga0062385_109902162	3300004080	Bog Forest Soil	ANGVKFAFPTVQIASDGEPSPAATAGAAKRALELTKPAAAAAE*
Ga0062388_1011749302	3300004635	Bog Forest Soil	FDENGIKFAVPTVQVAGEGDTATAAAAQRALKLTQTAAV*
Ga0070667_1001594062	3300005367	Switchgrass Rhizosphere	ANGIKFAIPTVQLSGDGDPSKPATAAAVAHQTLQLTQPAAAE*
Ga0070714_1004496681	3300005435	Agricultural Soil	ANGIKFAFPTVQVAGEGEASTAAVAQRALELTRPAAAAAE*
Ga0066903_1039957491	3300005764	Tropical Forest Soil	ENGIKFAFPTVQVAGEAEAANAAVAQHALELTRPAAA*
Ga0070766_110707791	3300005921	Soil	ANGIKFAFPTVQIAGDGEPSAAAVAHRALELTQPAAA*
Ga0070717_114933942	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DANGIKFAYPTVQIAGDGEPSSAAVAHRALELTQPAAA*
Ga0099791_103637161	3300007255	Vadose Zone Soil	NGIKFAFPTVSVTGEGEASAATGAVAQRALELTHPAAAAAD*
Ga0066710_1016592973	3300009012	Grasslands Soil	GIKFAFPTVSVAGEGEPATAALAQRGLELTRPSAAAAE
Ga0066709_1037249542	3300009137	Grasslands Soil	KFAFPTVSVTGEGEPATAAVAQRALELTHPAAAAE*
Ga0126376_106155191	3300010359	Tropical Forest Soil	KFAFPTVQVAGEGEPATAAAAQHALELTRPVAAA*
Ga0126372_127542482	3300010360	Tropical Forest Soil	EFAFPTVQVAGGGEPTVAAARQGLEMMKPPAAEA*
Ga0126378_113120812	3300010361	Tropical Forest Soil	DENDIKFAFPTVQVAGEGAPATTAVAQRALELTRPAAAE*
Ga0126378_116639801	3300010361	Tropical Forest Soil	GIKFAFPTVQVAGEGETPTAAVAQRALELTQPAAAAE*
Ga0126378_119740411	3300010361	Tropical Forest Soil	FAFPTVQVAGDGEPSTAAVAQRGLELTRPQPEAAE*
Ga0126378_132301332	3300010361	Tropical Forest Soil	NGIKFAFPTVQVAGDAEPATAAAARQALALAQPQPQAAE*
Ga0126381_1012663731	3300010376	Tropical Forest Soil	GIKFAFPTVQVAGEGEAATAAVAHRTLELTQPPAAA*
Ga0126381_1014648851	3300010376	Tropical Forest Soil	NGIKFAFPTVQVAGEGEPATSAAAQHALELTRPVAAA*
Ga0126381_1038859991	3300010376	Tropical Forest Soil	FDENAIKFAFPTVQVAGDREPVEVAAAQKALTLTQPTAA*
Ga0126383_135594381	3300010398	Tropical Forest Soil	SGIKFAFPTVQVAGEGEAATAAVAQRGLDLTRPQPAAAE*
Ga0150983_129680211	3300011120	Forest Soil	GIKFAFPTVQIAGEGDAATAAIAERALELTRPQAAE*
Ga0137376_107714681	3300012208	Vadose Zone Soil	IKFAFPTVSVTGEGEPATAAVAQRGLELTHPAAAAAE*
Ga0137376_110792943	3300012208	Vadose Zone Soil	FAFPTVSVAGEGEPATAALAQRGLELTRPSAAAAE*
Ga0164303_107940342	3300012957	Soil	ENGIKFAFPTVSVTGEGEPATAAVAQRALELTHPAAAAAE*
Ga0182036_105048511	3300016270	Soil	NGIKFAFPTVQVAGEGEAATAAVAQRGLELTQPAAA
Ga0182032_102571091	3300016357	Soil	GIKFAFPTVQVAGESEVATAAVAQRGLELIRPQAATGE
Ga0182034_100604283	3300016371	Soil	IKFAFPTVQVAGEGEASTAAVAQRALELTQPQAAA
Ga0182037_120583322	3300016404	Soil	KFAFPTVQVAGEGEPTTAAVAQRGLELTHPAAAAAQ
Ga0187819_101913462	3300017943	Freshwater Sediment	ANGIKFAFPTVQLAGEGEPSAHATAAVAQQALALTRPHAAE
Ga0066655_113577831	3300018431	Grasslands Soil	FAFPTVSVAGDGEPSTAAVAQRGLELTHPAAAAAE
Ga0066662_115020862	3300018468	Grasslands Soil	ENGIKFAFPTVQVAGESEAAGTTAAVAQRGLELTHPAAVAAE
Ga0210407_109785602	3300020579	Soil	FAYPTVQIAGDGEPSTDATAAVAQRALELTKPAAA
Ga0210395_102228363	3300020582	Soil	NGIKFAFPTVQVAGEGETSAATAAVAQRTLELAKPAAA
Ga0210406_112622941	3300021168	Soil	GIKFAFPTVQIAGDGEPSTDATAAVAHRALELTKPTAA
Ga0210386_105427911	3300021406	Soil	FAYPTVQIAGDGEPSRAAVAQRALELTRPAAAAAE
Ga0213871_101832192	3300021441	Rhizosphere	ENGIKFAFPTVQIAGEGEAAAAAAARHALELTQPTAAE
Ga0210392_110819172	3300021475	Soil	WIKFAFPTVQIAGEGEPATAAVAQRGLELTHPAAAAAE
Ga0126371_110974532	3300021560	Tropical Forest Soil	ENGIKFAFPTVQVAGEGEPATVAVAQRAPELTQPAAA
Ga0126371_111880701	3300021560	Tropical Forest Soil	GIKFAFPTVQVAGEGEAATTAVAQRGLELTRPQPAAAAE
Ga0126371_114387581	3300021560	Tropical Forest Soil	IKFAFPTVQVAGEGESATAAVAQRGPELTRSQPAAAE
Ga0126371_137450241	3300021560	Tropical Forest Soil	ENGIKFAFPTVQVAGGGEGATATAVARQALELSRQQAAE
Ga0126371_139403221	3300021560	Tropical Forest Soil	ENGIKFAFPTVQVAGEGAPATTAVAQRALELTRPAAAE
Ga0242665_100944861	3300022724	Soil	RHQIRLPTVQVAGEGDTSAATAAVAQRTLELVKPAVV
Ga0207684_115347462	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	NGIKFAFPTVSVTGEGEPVTAATAAVAQRALELTHPAAAAADS
Ga0209448_100684722	3300027783	Bog Forest Soil	ENGIKFAFPTVSVTGEGETSAATAAIAQRTLELAKPAAAAA
Ga0265754_10138811	3300031040	Soil	GIKFAYPTVQLAGDGEPATAAIAQQALQLTHPTAAAAE
Ga0170824_1037794641	3300031231	Forest Soil	NGIKFAFPTVQVAGEGEPSRGAIAQEGLALTRPQAAE
Ga0170824_1037828411	3300031231	Forest Soil	NGIKFAFPTVQVAGEGEPSRGAIAQEGLALTRPQEAE
Ga0170818_1111788921	3300031474	Forest Soil	KFAFPTVQIAGDGEPSTAATAAVAQRALELTKPAAA
Ga0318528_102941622	3300031561	Soil	KFAFPTVQVAGEGEPSTAAVAQRGLELTHPAAAAAAQ
Ga0318515_107196101	3300031572	Soil	CNGIKFAFPTVQIAGDGEPSTAATAGAAQRALEMTQPAAA
Ga0318542_103362601	3300031668	Soil	IKVAVPTVQVAGEGEASTAAVAQRALELTQPQAAA
Ga0318572_102899831	3300031681	Soil	IKFAFPTVQVAGEGEAATAAVAHRTLELTQPPAAA
Ga0310686_1114401811	3300031708	Soil	GIKFAFPTVQVAGEGDTPAATAAVAQRALELTRPAAAAAR
Ga0310686_1174238991	3300031708	Soil	FDENGIKFAFPTVQLAGDGDPSTAAIAQRTLELLHPATV
Ga0306917_105259361	3300031719	Soil	KFAFPTVQVAGEGEPSTAAVAQRGLELTRPAAAAAE
Ga0318500_103668192	3300031724	Soil	IKFAFPTVQVAGEGEPATAAAAQHALELTRPVAAA
Ga0306918_101954071	3300031744	Soil	NGIKFAFPTVQVAGEGEPATAAAAQHALELSRPVAAA
Ga0306918_105592752	3300031744	Soil	EHGIKFAFPTVQVAGEGEAATAAVAHRTLELTQPPAAA
Ga0318494_104227311	3300031751	Soil	GIKFAFPTVQVAGETEAATAAVAQHALGLTRPVAAG
Ga0307475_107629441	3300031754	Hardwood Forest Soil	ENGIKFAFPTVSVTGEGEPSNAAVAQRTLELVHPAPV
Ga0318546_112484851	3300031771	Soil	HGIKFAFPTVQVAGQGEAATAAVAHRTLELTQPPAAA
Ga0318547_106414932	3300031781	Soil	GIKVAFTTVQVAGESEPSTAAVAQRALELTQPAAA
Ga0318529_100041005	3300031792	Soil	FAFPTVQVAGEGEPSTAAVAQRGLELTHPAAAAAAQ
Ga0318557_101351023	3300031795	Soil	IKFAFPTVQLAGEGEPSPAATAAVAQQALQLTRPAAAAAE
Ga0318497_103286601	3300031805	Soil	GIKFAFPTVQVAGEAEAATAAVAQHGLELTRPAAA
Ga0318497_106434411	3300031805	Soil	GIKFAFPTVQVAGEGDTSAATAAVAQRALELTHPAAAAAE
Ga0307413_118254762	3300031824	Rhizosphere	NGIKFAFPTVQVAGGAEGPVAPAVAQQAIDMLEKPAAE
Ga0310917_103961661	3300031833	Soil	IKFAFPTVQVAGEGEPSRAAIAREALELTRPAAAAAE
Ga0306919_103451811	3300031879	Soil	IKFAFPTVQVAGEAEPATTTAAVPQRGLELTQPAAA
Ga0306919_103964943	3300031879	Soil	GIKFAFPTVQVAGEGEAATAAVAHRTLELTQPPAAA
Ga0306919_106267661	3300031879	Soil	KAFDENDIKFAFPTVQVAGETEAATAAVAQHALGLTRPVAAG
Ga0306925_112007032	3300031890	Soil	EHGIKFAFPTVQVAGDGEAATAAVAQRGLELTRPQPEAAE
Ga0306925_117662742	3300031890	Soil	NGIKFAFPTVQIAGEGEAANAAAARRVLELTQPAAAE
Ga0306923_113621151	3300031910	Soil	FAFPTVQVAGGEGEPSTAAVAQRGLELTHPQAAAAAE
Ga0306921_102525674	3300031912	Soil	GIKFAFPTVQVAGEGEPATAAVAQRGLELTHPAAAAE
Ga0306921_110410151	3300031912	Soil	FAYPTVQVAGAGEGESTTAAVSQQALELTRPQAAE
Ga0310912_100810863	3300031941	Soil	DENGIKFAFPTVQVAGEGEPSRAAIAREALELTRPAAAAAE
Ga0310912_105092683	3300031941	Soil	DANGIKFAFPTVQLAGEGEPSPAATAAVAQQALQLTRPAAAAAE
Ga0306926_115288971	3300031954	Soil	IKFAFPTVQVAGEGEAATAAVAQRGLELTRPQPAAAE
Ga0306926_121629971	3300031954	Soil	MSDLLVIAFPTVQVAGEGKAAVADLARRALELTQPAAAE
Ga0318530_100933181	3300031959	Soil	PTVQLAGEGEPSPAATAAVAQQALQLTRPAAAAAE
Ga0318530_104899991	3300031959	Soil	DENGIKFAFPTVQVAGEAEATTAAVAQRGLELTQPAAA
Ga0307479_121059562	3300031962	Hardwood Forest Soil	IKFAFPTVQIAGEGDAATAAIAERALELTRPQAHAAE
Ga0306922_106504862	3300032001	Soil	GIKFAFPTVQVAGDGEPSTAAVAQRGLELTHPAAAAAE
Ga0306922_120504791	3300032001	Soil	GIKFAFPTVQVAGETEAATAAVAQRALELAHPAAAE
Ga0318507_104757641	3300032025	Soil	GIKFAFPTVQVAGEGEPATAAAAQHALELTRPVAAA
Ga0310911_101282183	3300032035	Soil	ENSIKFAFPTVQVAGEGEPATAAAAQHALELTRPVAAA
Ga0310911_108118002	3300032035	Soil	NGIKFAFPTVQVAGETEGAAAAAVAQRGLELTQPAAA
Ga0318556_106511413	3300032043	Soil	IKFAFPTVQVAGEGDASAATAAVAQRTLELTHPAAA
Ga0318532_102888662	3300032051	Soil	FSFPTVQVAGEGEPSTAAVAQRGLELTRPQPAAAE
Ga0318505_104584291	3300032060	Soil	NGIKFAFPTVQVAGETEAATAAVAQHALGLTQPVAAE
Ga0318504_101998522	3300032063	Soil	KFAFPTVQVAGGEGEPSTAAVAQRGLELTHPQAAAAAE
Ga0318553_100724654	3300032068	Soil	FAFPTVQVAGEGEPSTAAVAQRGLELTRPAAAAAE
Ga0318553_104997672	3300032068	Soil	IKFAFPTVQVAGEGEPSTAAVAQRGLELTHPAAAAAAQ
Ga0306924_108098382	3300032076	Soil	IKFAFPTVQVAGEGEPATAAAAQHALELTRPVEAA
Ga0318540_103557021	3300032094	Soil	FAFPTVQVAGEGEPSRAAIAREALELTRPAAAAAE
Ga0307471_1010291322	3300032180	Hardwood Forest Soil	GIKFAFPTVSVTGEGEPATAATAAVAQRGLELTHPVVAAAE
Ga0306920_1014968501	3300032261	Soil	ENAIKFAFPTVQVAGEGEPATAAAAQHALELTRPVAAA
Ga0310914_103362831	3300033289	Soil	NGIKFAFPTVQVAGEGEAATAAVAQRALELTQPAAA
Ga0214471_102849434	3300033417	Soil	FDQNGIKFAFPTVQGAGSGDAAAVAAARQGLGLTLPPPAA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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