Metagenome Family F100457

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100457
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	51 residues
Representative Sequence	MSDPALPLVEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFH
Number of Associated Samples	65
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	97.06 %
% of genes near scaffold ends (potentially truncated)	97.06 %
% of genes from short scaffolds (< 2000 bps)	87.25 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Archaea (98.039 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (42.157 % of family members)
Environment Ontology (ENVO)	Unclassified (53.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.882 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.06% β-sheet: 0.00% Coil/Unstructured: 46.94%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00202	Aminotran_3	14.71
PF01909	NTP_transf_2	5.88
PF05168	HEPN	1.96
PF12706	Lactamase_B_2	1.96
PF01918	Alba	0.98
PF01336	tRNA_anti-codon	0.98
PF01061	ABC2_membrane	0.98
PF13187	Fer4_9	0.98
PF00326	Peptidase_S9	0.98
PF13401	AAA_22	0.98
PF04140	ICMT	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	1.96
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	1.96
COG1581	DNA/RNA-binding protein AlbA/Ssh10b	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.04 %
Viruses	superkingdom	All Organisms → Viruses	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	98.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	6.86 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	6.86 %
archaeon 13_1_20CM_52_20	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_52_20	2.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.98 %
Unclassified	root	N/A	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002561\|JGI25384J37096_10010215	All Organisms → cellular organisms → Archaea	3562	Open in IMG/M
3300002561\|JGI25384J37096_10218924	All Organisms → cellular organisms → Archaea	557	Open in IMG/M
3300002562\|JGI25382J37095_10176909	All Organisms → cellular organisms → Archaea	661	Open in IMG/M
3300002908\|JGI25382J43887_10041575	All Organisms → cellular organisms → Archaea	2500	Open in IMG/M
3300002908\|JGI25382J43887_10050340	All Organisms → cellular organisms → Archaea	2264	Open in IMG/M
3300002908\|JGI25382J43887_10212089	All Organisms → cellular organisms → Archaea	922	Open in IMG/M
3300002909\|JGI25388J43891_1018000	All Organisms → cellular organisms → Archaea	1261	Open in IMG/M
3300005167\|Ga0066672_10170831	All Organisms → cellular organisms → Archaea	1373	Open in IMG/M
3300005178\|Ga0066688_10124250	All Organisms → cellular organisms → Archaea	1598	Open in IMG/M
3300005178\|Ga0066688_10668464	All Organisms → cellular organisms → Archaea	663	Open in IMG/M
3300005447\|Ga0066689_11048468	All Organisms → cellular organisms → Archaea	501	Open in IMG/M
3300005450\|Ga0066682_10813479	All Organisms → cellular organisms → Archaea	563	Open in IMG/M
3300005540\|Ga0066697_10062540	All Organisms → cellular organisms → Archaea	2127	Open in IMG/M
3300005540\|Ga0066697_10329050	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_52_20	893	Open in IMG/M
3300005540\|Ga0066697_10547020	All Organisms → cellular organisms → Archaea	649	Open in IMG/M
3300005553\|Ga0066695_10650742	All Organisms → cellular organisms → Archaea	624	Open in IMG/M
3300005554\|Ga0066661_10362618	All Organisms → cellular organisms → Archaea	887	Open in IMG/M
3300005554\|Ga0066661_10650555	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_52_20	621	Open in IMG/M
3300005556\|Ga0066707_10310830	All Organisms → cellular organisms → Archaea	1031	Open in IMG/M
3300005556\|Ga0066707_10811366	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	578	Open in IMG/M
3300005568\|Ga0066703_10118082	All Organisms → cellular organisms → Archaea	1575	Open in IMG/M
3300005568\|Ga0066703_10749778	All Organisms → cellular organisms → Archaea	560	Open in IMG/M
3300006046\|Ga0066652_100190572	All Organisms → cellular organisms → Archaea	1756	Open in IMG/M
3300007258\|Ga0099793_10260374	All Organisms → cellular organisms → Archaea	839	Open in IMG/M
3300007258\|Ga0099793_10280704	All Organisms → cellular organisms → Archaea	807	Open in IMG/M
3300007258\|Ga0099793_10320385	All Organisms → cellular organisms → Archaea	755	Open in IMG/M
3300007265\|Ga0099794_10358504	All Organisms → cellular organisms → Archaea	759	Open in IMG/M
3300009012\|Ga0066710_100540976	All Organisms → cellular organisms → Archaea	1761	Open in IMG/M
3300009012\|Ga0066710_103765264	All Organisms → cellular organisms → Archaea	569	Open in IMG/M
3300009038\|Ga0099829_10622473	All Organisms → cellular organisms → Archaea	897	Open in IMG/M
3300009038\|Ga0099829_11757681	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300009088\|Ga0099830_10468888	All Organisms → cellular organisms → Archaea	1024	Open in IMG/M
3300009088\|Ga0099830_11443413	All Organisms → cellular organisms → Archaea	573	Open in IMG/M
3300009088\|Ga0099830_11843986	All Organisms → cellular organisms → Archaea	505	Open in IMG/M
3300009089\|Ga0099828_10373525	All Organisms → cellular organisms → Archaea	1285	Open in IMG/M
3300009089\|Ga0099828_10724067	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	893	Open in IMG/M
3300009090\|Ga0099827_11621436	All Organisms → cellular organisms → Archaea	564	Open in IMG/M
3300009137\|Ga0066709_100048849	All Organisms → cellular organisms → Archaea	4751	Open in IMG/M
3300009137\|Ga0066709_101214187	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1110	Open in IMG/M
3300010303\|Ga0134082_10454285	All Organisms → cellular organisms → Archaea	554	Open in IMG/M
3300010304\|Ga0134088_10660535	All Organisms → cellular organisms → Archaea	523	Open in IMG/M
3300010322\|Ga0134084_10165584	All Organisms → cellular organisms → Archaea	753	Open in IMG/M
3300010323\|Ga0134086_10202509	All Organisms → cellular organisms → Archaea	742	Open in IMG/M
3300010333\|Ga0134080_10527058	All Organisms → cellular organisms → Archaea	565	Open in IMG/M
3300010335\|Ga0134063_10118870	Not Available	1210	Open in IMG/M
3300010336\|Ga0134071_10210335	All Organisms → cellular organisms → Archaea	961	Open in IMG/M
3300010336\|Ga0134071_10611571	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	571	Open in IMG/M
3300011270\|Ga0137391_11410351	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	542	Open in IMG/M
3300012189\|Ga0137388_10291990	All Organisms → cellular organisms → Archaea	1493	Open in IMG/M
3300012189\|Ga0137388_10954438	All Organisms → cellular organisms → Archaea	792	Open in IMG/M
3300012199\|Ga0137383_10324105	All Organisms → cellular organisms → Archaea	1128	Open in IMG/M
3300012202\|Ga0137363_10237451	All Organisms → cellular organisms → Archaea	1477	Open in IMG/M
3300012203\|Ga0137399_10144805	All Organisms → cellular organisms → Archaea	1892	Open in IMG/M
3300012203\|Ga0137399_10558151	All Organisms → cellular organisms → Archaea	962	Open in IMG/M
3300012206\|Ga0137380_10171849	All Organisms → cellular organisms → Archaea	1973	Open in IMG/M
3300012206\|Ga0137380_10272673	All Organisms → cellular organisms → Archaea	1521	Open in IMG/M
3300012206\|Ga0137380_11663603	All Organisms → cellular organisms → Archaea	522	Open in IMG/M
3300012207\|Ga0137381_10064826	All Organisms → cellular organisms → Archaea	3045	Open in IMG/M
3300012209\|Ga0137379_10080885	All Organisms → cellular organisms → Archaea	3125	Open in IMG/M
3300012209\|Ga0137379_10229493	All Organisms → cellular organisms → Archaea	1770	Open in IMG/M
3300012209\|Ga0137379_10229700	All Organisms → cellular organisms → Archaea	1769	Open in IMG/M
3300012209\|Ga0137379_10915298	All Organisms → cellular organisms → Archaea	782	Open in IMG/M
3300012209\|Ga0137379_10934425	All Organisms → cellular organisms → Archaea	772	Open in IMG/M
3300012209\|Ga0137379_10956644	All Organisms → cellular organisms → Archaea	761	Open in IMG/M
3300012353\|Ga0137367_10481473	All Organisms → cellular organisms → Archaea	875	Open in IMG/M
3300012357\|Ga0137384_10217865	All Organisms → cellular organisms → Archaea	1596	Open in IMG/M
3300012361\|Ga0137360_11111954	All Organisms → cellular organisms → Archaea	683	Open in IMG/M
3300012362\|Ga0137361_10074368	All Organisms → cellular organisms → Archaea	2888	Open in IMG/M
3300012363\|Ga0137390_10416843	All Organisms → Viruses → Predicted Viral	1320	Open in IMG/M
3300012363\|Ga0137390_11429582	All Organisms → cellular organisms → Archaea	635	Open in IMG/M
3300012918\|Ga0137396_10074972	All Organisms → cellular organisms → Archaea	2372	Open in IMG/M
3300012918\|Ga0137396_11141446	All Organisms → cellular organisms → Archaea	554	Open in IMG/M
3300012918\|Ga0137396_11289457	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300012918\|Ga0137396_11289459	All Organisms → cellular organisms → Archaea	508	Open in IMG/M
3300012918\|Ga0137396_11294709	All Organisms → cellular organisms → Archaea	507	Open in IMG/M
3300012927\|Ga0137416_10325634	All Organisms → cellular organisms → Archaea	1281	Open in IMG/M
3300012975\|Ga0134110_10588850	All Organisms → cellular organisms → Archaea	515	Open in IMG/M
3300012977\|Ga0134087_10492413	All Organisms → cellular organisms → Archaea	615	Open in IMG/M
3300014150\|Ga0134081_10002339	All Organisms → cellular organisms → Archaea	4620	Open in IMG/M
3300014154\|Ga0134075_10067651	All Organisms → cellular organisms → Archaea	1489	Open in IMG/M
3300014154\|Ga0134075_10078900	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1380	Open in IMG/M
3300015358\|Ga0134089_10146904	All Organisms → cellular organisms → Archaea	929	Open in IMG/M
3300015358\|Ga0134089_10460430	All Organisms → cellular organisms → Archaea	552	Open in IMG/M
3300015359\|Ga0134085_10258875	All Organisms → cellular organisms → Archaea	759	Open in IMG/M
3300018433\|Ga0066667_12117162	All Organisms → cellular organisms → Archaea	521	Open in IMG/M
3300021088\|Ga0210404_10539708	All Organisms → cellular organisms → Archaea	660	Open in IMG/M
3300026297\|Ga0209237_1233913	All Organisms → cellular organisms → Archaea	567	Open in IMG/M
3300026298\|Ga0209236_1309450	All Organisms → cellular organisms → Archaea	511	Open in IMG/M
3300026315\|Ga0209686_1156231	All Organisms → cellular organisms → Archaea	687	Open in IMG/M
3300026327\|Ga0209266_1211476	All Organisms → cellular organisms → Archaea	686	Open in IMG/M
3300026332\|Ga0209803_1042848	All Organisms → cellular organisms → Archaea	2048	Open in IMG/M
3300026332\|Ga0209803_1312849	All Organisms → cellular organisms → Archaea	540	Open in IMG/M
3300026333\|Ga0209158_1127028	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	950	Open in IMG/M
3300026343\|Ga0209159_1040534	All Organisms → cellular organisms → Archaea	2383	Open in IMG/M
3300026532\|Ga0209160_1097019	All Organisms → cellular organisms → Archaea	1504	Open in IMG/M
3300026536\|Ga0209058_1075034	All Organisms → cellular organisms → Archaea	1797	Open in IMG/M
3300026536\|Ga0209058_1314088	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_52_20	540	Open in IMG/M
3300026550\|Ga0209474_10315657	All Organisms → cellular organisms → Archaea	906	Open in IMG/M
3300027643\|Ga0209076_1000339	All Organisms → cellular organisms → Archaea	7536	Open in IMG/M
3300028536\|Ga0137415_10890334	All Organisms → cellular organisms → Archaea	700	Open in IMG/M
3300032180\|Ga0307471_102180310	All Organisms → cellular organisms → Archaea	698	Open in IMG/M
3300032180\|Ga0307471_103530937	All Organisms → cellular organisms → Archaea	553	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	99.02%
Loam	Environmental → Terrestrial → Soil → Loam	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	57.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	38.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	42.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	24.51%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	15.69%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	13.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25384J37096_100102151	3300002561	Grasslands Soil	MTEPVLPLVEPDLVGVWRKNVWWFGLRWPFSTVLFSWVTVASTLAPEFHLDRYLLTMLAGFFGL
JGI25384J37096_102189241	3300002561	Grasslands Soil	MSESVLPMVEPDLVGVWKMNVWWFGLRWPFSMVLFSWVTVASTLAPA
JGI25382J37095_101769092	3300002562	Grasslands Soil	MANTALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTMLAG
JGI25382J43887_100415751	3300002908	Grasslands Soil	MANTALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTMLAGFFGLVVGAHYI
JGI25382J43887_100503402	3300002908	Grasslands Soil	MAMSETALPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMLAGYGRLDAGSRVSP*
JGI25382J43887_102120892	3300002908	Grasslands Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWVTVASTLAP
JGI25388J43891_10180003	3300002909	Grasslands Soil	MSDPVLPLVEPDLVGTWRKNVWWFGLRWPFSLVLFSWVTVASTLAPEFHLDRYLLTMLA
Ga0066672_101708311	3300005167	Soil	MPDSVLPLVEPDLVGIWKKNVWWFGLRWPFSFVLFSWVTMASTLAPEFHLDRYLF
Ga0066688_101242503	3300005178	Soil	MPDRVLPLVEPDLVGIWKKNVWWFGLRWPFSMVLFSWVTVA
Ga0066688_106684642	3300005178	Soil	MPDSVLPLVEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVASTL
Ga0066689_110484682	3300005447	Soil	MTDEALPLVEPDLAGIWRKNVWWFGFRWPFSLVLFSWVTVASALAPQFHLDRYLLTML
Ga0066682_108134791	3300005450	Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWVTVASTLAPEF
Ga0066697_100625401	3300005540	Soil	MSASVLPMVEPDLVGVWKKNVWWFGLRWPFSTVLFSWVTVASTL
Ga0066697_103290501	3300005540	Soil	MVEPGVPLVEPDLVGIWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMLAGFFG
Ga0066697_105470201	3300005540	Soil	MSTSILPMVEPDLVGVWKKNVWWFGLRWPFSTVLFSWVTVASTL
Ga0066695_106507422	3300005553	Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWV
Ga0066661_103626182	3300005554	Soil	MSETVLPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEF
Ga0066661_106505551	3300005554	Soil	MPRERTRTMVEPGVPLVEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMLAGF
Ga0066707_103108301	3300005556	Soil	MSDAALPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRY
Ga0066707_108113661	3300005556	Soil	MSESVLPMVEPDLVGVWKMNVWWFGLRWPFSMVLFSWVTVASTLAPAFHLDRYLLTMLAGFFGLV
Ga0066703_101180821	3300005568	Soil	MGETVLPIVEPDLVGIWRKNVWWFGFRWPFSMVLFSWV
Ga0066703_107497781	3300005568	Soil	MGDPVLPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEF
Ga0066652_1001905721	3300006046	Soil	MSDAALPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFH
Ga0099793_102603741	3300007258	Vadose Zone Soil	MSETALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLVTML
Ga0099793_102807041	3300007258	Vadose Zone Soil	MGETVLPLVEPDLVGIWRKNVWWFGFRWPFSMVLFS
Ga0099793_103203852	3300007258	Vadose Zone Soil	MTDEALPLVEPDLVGIWRKNVWWFGFRWPFSLVLFSWVTVASALAPQFHLDRYLLTMLAGFFG
Ga0099794_103585041	3300007265	Vadose Zone Soil	MGETVLPLVEPDLVGVWRKNVWWFGLRWPFSMVLF
Ga0066710_1005409764	3300009012	Grasslands Soil	MTDEALPLVEPDLVGIWRKNVWWFGFRWPFSLVLFSWVTVASTLAPEFHLDRYLLTMLAGFFGLVVGA
Ga0066710_1037652642	3300009012	Grasslands Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWVTVASTLAPEFYL
Ga0099829_106224732	3300009038	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVAS
Ga0099829_117576811	3300009038	Vadose Zone Soil	MSETILPLVEPDLVGIWRKNVWWFGFRWPFSMVLFSWVTVAS
Ga0099830_104688881	3300009088	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLF
Ga0099830_114434132	3300009088	Vadose Zone Soil	MGEPVLPLVEPDLVGIWRKNVWWFGLRWPFSTVLFSWVTVASTLAPEFHL
Ga0099830_118439861	3300009088	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWYGLRWPFSFVLFSWVTVASTLAPEFHLTRYLLTML
Ga0099828_103735252	3300009089	Vadose Zone Soil	MSETVLPLVEPDLVGIWKKNVWWFGFRWPFSMVLFSWVTV
Ga0099828_107240672	3300009089	Vadose Zone Soil	MDEAVLPLVEPDLVGIWRKNVWWFGLRWPFSTVLFSWV
Ga0099827_116214361	3300009090	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLA
Ga0066709_1000488491	3300009137	Grasslands Soil	MSDPALPLVEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFH
Ga0066709_1012141872	3300009137	Grasslands Soil	MTEPVLPLVEPDLVGVWRKNVWWFGLRWPFSTVLFSWVTVAS
Ga0134082_104542851	3300010303	Grasslands Soil	MAEPAIPIVEPDLVGIWKKNVWWFGFRWPFSLVLFSWVTVAATLAPEFHLDRYLLTMLAGFFGLVVG
Ga0134088_106605351	3300010304	Grasslands Soil	MSESVLPMVEPDLVGVWKMNVWWFGLRWPFSMVLFSWVTVASTLAPAFHLD
Ga0134084_101655842	3300010322	Grasslands Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWVTV
Ga0134086_102025091	3300010323	Grasslands Soil	MSDAALPLVEPDLVGLWRKNVWWFGFRWPFSMVLFSWVTVASTLAPE
Ga0134080_105270582	3300010333	Grasslands Soil	MSDAALPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWV
Ga0134063_101188702	3300010335	Grasslands Soil	MSASALPIVEPDLVGVWKKNVWWFGLRWPFSTVLF
Ga0134071_102103352	3300010336	Grasslands Soil	MSDSALPLVEPDLVGIWRKNVWWFGLRWPFSFVLFSWVTVASTLAPEF
Ga0134071_106115711	3300010336	Grasslands Soil	MSETVLPLGEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVAST
Ga0137391_114103511	3300011270	Vadose Zone Soil	MGETVLPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEF
Ga0137388_102919901	3300012189	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVT
Ga0137388_109544381	3300012189	Vadose Zone Soil	MADTALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTM
Ga0137383_103241053	3300012199	Vadose Zone Soil	MTDEALPLVEPDLAGIWRKNVWWFGFRWPFSLVLFSWVTVASALAPQFHLDRYLLTMLAGFFGLVVGA
Ga0137363_102374514	3300012202	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPE
Ga0137399_101448051	3300012203	Vadose Zone Soil	MGDPVLPLVEPDLVGIWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEF
Ga0137399_105581511	3300012203	Vadose Zone Soil	MSNSALPLIEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPE
Ga0137380_101718491	3300012206	Vadose Zone Soil	MGEPVLPLVEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLLTLL
Ga0137380_102726731	3300012206	Vadose Zone Soil	MPDGVLPLVEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMLAGFF
Ga0137380_116636032	3300012206	Vadose Zone Soil	MSDVALPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMV
Ga0137381_100648261	3300012207	Vadose Zone Soil	MSESVLPIVEPDLVGVWKKNVWWFGLRWPFSTVLFSWVTVASTL
Ga0137379_100808855	3300012209	Vadose Zone Soil	MSEPVLPLVEPDLVGIWRKNVWWFGFRWPFSTVLFSWVTVASTLAPEFHLDRYLLT
Ga0137379_102294932	3300012209	Vadose Zone Soil	MSESVLPIVEPDLVGVWKKNVWWFGLRWPFSTVLFSWVTVASTLAPEFH
Ga0137379_102297002	3300012209	Vadose Zone Soil	MSESVLPVVEPDLVGVWKKNVWWFGLRWPFSTVLFSWVTVASTLAPEFH
Ga0137379_109152981	3300012209	Vadose Zone Soil	MRDSVLPLVEPDLVGIWKKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDR
Ga0137379_109344251	3300012209	Vadose Zone Soil	MSDAALPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMLAGFFGLVVG
Ga0137379_109566441	3300012209	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTMLAGFFG
Ga0137367_104814731	3300012353	Vadose Zone Soil	MRETALPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTL
Ga0137384_102178651	3300012357	Vadose Zone Soil	MSEPVLPLVEPDLVGVWRKNVWWFGFRWPFSTVLFSWVTVASTLAPEFHLDRYLLT
Ga0137360_111119542	3300012361	Vadose Zone Soil	MTEPVLPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEFHLDR
Ga0137361_100743682	3300012362	Vadose Zone Soil	MSESVLPVVEPDLVGVWKKNVWWFGLRWPFSTVLFSWVTVASTLAPEFHLDRYLLTMIA*
Ga0137390_104168433	3300012363	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDR
Ga0137390_114295821	3300012363	Vadose Zone Soil	MTDSVLPLVEPDLVGIWKKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDR
Ga0137396_100749723	3300012918	Vadose Zone Soil	MGEPVLPLVEPDLVGIWRKNVWWFGFRWPFSMVLFSWVTVAS
Ga0137396_111414461	3300012918	Vadose Zone Soil	MSDSALPLIEPDLVGIWRKNVWWFGFRWTFSFVLFSWVTV
Ga0137396_112894571	3300012918	Vadose Zone Soil	MADTALPLVEPDLVGIWKKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTMLAG
Ga0137396_112894591	3300012918	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHL
Ga0137396_112947092	3300012918	Vadose Zone Soil	MSDSVLPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTMLAGFFG
Ga0137416_103256342	3300012927	Vadose Zone Soil	MTETVLPKVEPDLVGIWKKNVWWFGLRWPFSTVLFSWITVASTLAPEFHLDRYLLTL
Ga0134110_105888502	3300012975	Grasslands Soil	MSDAALPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEFHL
Ga0134087_104924132	3300012977	Grasslands Soil	MPDSVLPIVEPDLVGIWRKNVWWFGLRWPFSFVLFSWVTVASTLAPEFHMDRYLLTMLA
Ga0134081_100023391	3300014150	Grasslands Soil	MSDAALPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVT
Ga0134075_100676511	3300014154	Grasslands Soil	MAEPAIPIVEPDLVGIWKKNVWWFGFRWPFSLVLF
Ga0134075_100789003	3300014154	Grasslands Soil	MSEAELVPIEPDLVGIWRKNVWWFGLRIPFSLELVSWATMTAA
Ga0134089_101469042	3300015358	Grasslands Soil	MAEPAIPIVEPDLVGIWKKNVWWFGFRWPFSLVLFSWVTVASTLAPEFH
Ga0134089_104604302	3300015358	Grasslands Soil	MSDAALPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMLAGFFGLVVGA
Ga0134085_102588751	3300015359	Grasslands Soil	MSETVLPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPE
Ga0066667_121171621	3300018433	Grasslands Soil	MSETVLPLVEPDLVGVWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLL
Ga0210404_105397081	3300021088	Soil	MSDTALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTM
Ga0209237_12339131	3300026297	Grasslands Soil	MGETVLPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTV
Ga0209236_13094501	3300026298	Grasslands Soil	MTDEALPLVEPDLVGIWRKNVWWFGFRWPFSLVLFSWVTVASTLAPEFHLDRYLLTMLAG
Ga0209686_11562312	3300026315	Soil	MSDSILPLVEPDLVGIWRKNVWWFGLRWPFSFVLFSWVTVASTLAPEFHMDRYL
Ga0209266_12114762	3300026327	Soil	MSDAALPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEFHLDRYLLTM
Ga0209803_10428484	3300026332	Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWVTVASTLAPEFHLDRYLL
Ga0209803_13128491	3300026332	Soil	MSDSALPLVEPDLVGIWRKNVWWFGLRWPFSFVLFSW
Ga0209158_11270281	3300026333	Soil	MPDSVLPLVEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVASTLAPEFHLDRYLLTM
Ga0209159_10405341	3300026343	Soil	MSDAALPLVEPDLVGVWRKNVWWFGFRWPFSMVLFS
Ga0209160_10970194	3300026532	Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWVTVASTLAPEFHLDRYL
Ga0209058_10750341	3300026536	Soil	MSDPVLPLVEPDLVGIWRKNVWWFGLRWPFSLVLFSWVTVASTLAPEFHLD
Ga0209058_13140881	3300026536	Soil	MPRERTRTMVEPGVPLVEPDLVGIWRKNVWWFGFRWPFSMVLFSWVTVASTLAPEFHLDRYLLTMLAGFF
Ga0209474_103156572	3300026550	Soil	MSDAALPLVEPDLVGVWRKNVWWFGFRWPFSMVLFSWVTV
Ga0209076_10003397	3300027643	Vadose Zone Soil	MSDSALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRYLLTMLAGFLVATSIFRIFRR
Ga0137415_108903342	3300028536	Vadose Zone Soil	MGDTALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWV
Ga0307471_1021803102	3300032180	Hardwood Forest Soil	MSDPVLPLIEPDLVGIWRKNVWWFGLRWPFSMVLFSWVTVAATLAPEF
Ga0307471_1035309372	3300032180	Hardwood Forest Soil	MSETALPLVEPDLVGIWRKNVWWFGFRWPFSFVLFSWVTVASTLAPEFHLDRY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100457

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences