Basic Information | |
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Family ID | F100452 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 72 residues |
Representative Sequence | MESAGKRLLRLLVERDPASPEFRSGVRAALRPEELPGGGEFDLWRDVFVQQKLPWGRFLQSALL |
Number of Associated Samples | 94 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 100.00 % |
% of genes near scaffold ends (potentially truncated) | 21.57 % |
% of genes from short scaffolds (< 2000 bps) | 20.59 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (81.373 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (15.686 % of family members) |
Environment Ontology (ENVO) | Unclassified (40.196 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (46.078 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 45.65% β-sheet: 0.00% Coil/Unstructured: 54.35% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 102 Family Scaffolds |
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PF14534 | DUF4440 | 6.86 |
PF04366 | Ysc84 | 5.88 |
PF03301 | Trp_dioxygenase | 1.96 |
PF08241 | Methyltransf_11 | 0.98 |
PF10164 | BRI3 | 0.98 |
PF02416 | TatA_B_E | 0.98 |
PF00990 | GGDEF | 0.98 |
PF07366 | SnoaL | 0.98 |
PF00005 | ABC_tran | 0.98 |
PF00578 | AhpC-TSA | 0.98 |
COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
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COG2930 | Lipid-binding SYLF domain, Ysc84/FYVE family | Lipid transport and metabolism [I] | 5.88 |
COG3483 | Tryptophan 2,3-dioxygenase (vermilion) | Amino acid transport and metabolism [E] | 1.96 |
COG1826 | Twin-arginine protein secretion pathway components TatA and TatB | Intracellular trafficking, secretion, and vesicular transport [U] | 0.98 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 81.37 % |
All Organisms | root | All Organisms | 18.63 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300001356|JGI12269J14319_10174361 | All Organisms → cellular organisms → Bacteria | 880 | Open in IMG/M |
3300006162|Ga0075030_101133513 | All Organisms → cellular organisms → Bacteria | 615 | Open in IMG/M |
3300009521|Ga0116222_1006348 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 5762 | Open in IMG/M |
3300009549|Ga0116137_1101095 | All Organisms → cellular organisms → Bacteria | 844 | Open in IMG/M |
3300009630|Ga0116114_1044493 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 1266 | Open in IMG/M |
3300009634|Ga0116124_1121975 | All Organisms → cellular organisms → Bacteria | 732 | Open in IMG/M |
3300010339|Ga0074046_10317879 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 953 | Open in IMG/M |
3300014165|Ga0181523_10287015 | All Organisms → cellular organisms → Bacteria | 932 | Open in IMG/M |
3300017929|Ga0187849_1109863 | All Organisms → cellular organisms → Bacteria | 1157 | Open in IMG/M |
3300017996|Ga0187891_1194932 | All Organisms → cellular organisms → Bacteria | 694 | Open in IMG/M |
3300017998|Ga0187870_1235769 | All Organisms → cellular organisms → Bacteria | 631 | Open in IMG/M |
3300018005|Ga0187878_1183015 | All Organisms → cellular organisms → Bacteria | 792 | Open in IMG/M |
3300018006|Ga0187804_10188041 | Not Available | 879 | Open in IMG/M |
3300018020|Ga0187861_10164520 | All Organisms → cellular organisms → Bacteria | 1014 | Open in IMG/M |
3300018026|Ga0187857_10219006 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 883 | Open in IMG/M |
3300020583|Ga0210401_10152582 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 2159 | Open in IMG/M |
3300025474|Ga0208479_1069429 | All Organisms → cellular organisms → Bacteria | 673 | Open in IMG/M |
3300026361|Ga0257176_1023520 | Not Available | 902 | Open in IMG/M |
3300029817|Ga0247275_1036469 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium | 1447 | Open in IMG/M |
3300030730|Ga0307482_1292301 | Not Available | 522 | Open in IMG/M |
3300032205|Ga0307472_101203480 | Not Available | 724 | Open in IMG/M |
3300033433|Ga0326726_11370705 | All Organisms → cellular organisms → Bacteria | 688 | Open in IMG/M |
3300033561|Ga0371490_1045093 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1332 | Open in IMG/M |
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Habitat | Taxonomy | Distribution |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 15.69% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 14.71% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 9.80% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 8.82% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 7.84% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 6.86% |
Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 4.90% |
Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 4.90% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 2.94% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil | 2.94% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.96% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.96% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 1.96% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 1.96% |
Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 1.96% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.96% |
Peat Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil | 1.96% |
Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.98% |
Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.98% |
Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.98% |
Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.98% |
Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 0.98% |
Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 0.98% |
Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere | 0.98% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300001356 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 | Environmental | Open in IMG/M |
3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
3300002914 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm | Environmental | Open in IMG/M |
3300002917 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm | Environmental | Open in IMG/M |
3300003219 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 | Environmental | Open in IMG/M |
3300004092 | Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
3300004152 | Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3 | Environmental | Open in IMG/M |
3300005174 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 | Environmental | Open in IMG/M |
3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Environmental | Open in IMG/M |
3300005938 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191 | Environmental | Open in IMG/M |
3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Environmental | Open in IMG/M |
3300009029 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189 | Environmental | Open in IMG/M |
3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
3300009088 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG | Environmental | Open in IMG/M |
3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
3300009521 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG | Environmental | Open in IMG/M |
3300009523 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG | Environmental | Open in IMG/M |
3300009549 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 | Environmental | Open in IMG/M |
3300009630 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 | Environmental | Open in IMG/M |
3300009634 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 | Environmental | Open in IMG/M |
3300009645 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40 | Environmental | Open in IMG/M |
3300009646 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150 | Environmental | Open in IMG/M |
3300009672 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG | Environmental | Open in IMG/M |
3300009762 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40 | Environmental | Open in IMG/M |
3300009824 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG | Environmental | Open in IMG/M |
3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Environmental | Open in IMG/M |
3300010339 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3 | Environmental | Open in IMG/M |
3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
3300011269 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG | Environmental | Open in IMG/M |
3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
3300012205 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG | Environmental | Open in IMG/M |
3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300014152 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG | Environmental | Open in IMG/M |
3300014155 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG | Environmental | Open in IMG/M |
3300014156 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG | Environmental | Open in IMG/M |
3300014162 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG | Environmental | Open in IMG/M |
3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300015241 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300017929 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100 | Environmental | Open in IMG/M |
3300017940 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100 | Environmental | Open in IMG/M |
3300017941 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150 | Environmental | Open in IMG/M |
3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
3300017996 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40 | Environmental | Open in IMG/M |
3300017998 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150 | Environmental | Open in IMG/M |
3300018003 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40 | Environmental | Open in IMG/M |
3300018005 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150 | Environmental | Open in IMG/M |
3300018006 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4 | Environmental | Open in IMG/M |
3300018017 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40 | Environmental | Open in IMG/M |
3300018020 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100 | Environmental | Open in IMG/M |
3300018021 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150 | Environmental | Open in IMG/M |
3300018022 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40 | Environmental | Open in IMG/M |
3300018025 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100 | Environmental | Open in IMG/M |
3300018026 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100 | Environmental | Open in IMG/M |
3300018040 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150 | Environmental | Open in IMG/M |
3300018042 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10 | Environmental | Open in IMG/M |
3300020579 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M | Environmental | Open in IMG/M |
3300020583 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M | Environmental | Open in IMG/M |
3300021168 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M | Environmental | Open in IMG/M |
3300024227 | Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4 | Host-Associated | Open in IMG/M |
3300025474 | Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes) | Environmental | Open in IMG/M |
3300026223 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes) | Environmental | Open in IMG/M |
3300026294 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes) | Environmental | Open in IMG/M |
3300026358 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B | Environmental | Open in IMG/M |
3300026361 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B | Environmental | Open in IMG/M |
3300026482 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B | Environmental | Open in IMG/M |
3300026489 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A | Environmental | Open in IMG/M |
3300026490 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A | Environmental | Open in IMG/M |
3300026508 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A | Environmental | Open in IMG/M |
3300026538 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes) | Environmental | Open in IMG/M |
3300027546 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes) | Environmental | Open in IMG/M |
3300027625 | Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes) | Environmental | Open in IMG/M |
3300027645 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027655 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes) | Environmental | Open in IMG/M |
3300027667 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027674 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027783 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes) | Environmental | Open in IMG/M |
3300027825 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes) | Environmental | Open in IMG/M |
3300027862 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes) | Environmental | Open in IMG/M |
3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
3300029817 | Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25 | Environmental | Open in IMG/M |
3300029882 | III_Palsa_E1 coassembly | Environmental | Open in IMG/M |
3300030730 | Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
3300033433 | Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN | Environmental | Open in IMG/M |
3300033561 | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fraction | Environmental | Open in IMG/M |
3300033827 | Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12269J14319_101743612 | 3300001356 | Peatlands Soil | MESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFDLWRDVFVQQKLPWGRFLQSALLHAAAVALLWT |
JGI12635J15846_104905763 | 3300001593 | Forest Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALRPTELPGSEEPEF |
JGI12635J15846_106782691 | 3300001593 | Forest Soil | MESAGKRLLRLLVERDPASPEFRSGVRAALRPEELPGGGEFDLWRDVFVQQKLPWGRFLQSALL |
JGI25617J43924_103627612 | 3300002914 | Grasslands Soil | MDSAGKELLKLLVERDPASPEFRSGVQTVLGLQELATGLPSDGEFDLWRDVFVQQKLPWGRFLQS |
JGI25616J43925_103772381 | 3300002917 | Grasslands Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQK |
JGI26341J46601_101685531 | 3300003219 | Bog Forest Soil | MESPGKNLLKLLVEHDPASPEFRSEVRAAFRPASAVPYQPGGHEFDMWRDVFVQQKLPWGRFLQSALLHTTAVALIWTLSFAWLRQQRILDR |
Ga0062389_1017065621 | 3300004092 | Bog Forest Soil | MESPGKRLLKLLLEHDPASPVRSGVQAALGPVAGQAEVPVDGEFDLWRDVFVQQRLP |
Ga0062386_1002988041 | 3300004152 | Bog Forest Soil | MESPEKNLLRLLVERDPASPEFRSGVRAALSRSESPAELASDGEFDLWRDVFVQQKLPWGRFLQSAVLHAAAFALLYAISLAWIRQQKI |
Ga0066680_100914554 | 3300005174 | Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAAA |
Ga0070711_1015323741 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MESPGKNLLRLLVEHDPTSPEFRSGVRASLRPARDAGGGDADLDLWRDVFVQQKLPWGRFMQSALLHTAALGLIWAI |
Ga0070706_1011248731 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTELLGSEEDQFDLWRDVFVQ |
Ga0066795_101273171 | 3300005938 | Soil | MEFPEKDLSKLLVERDPASLEFRSGVRAALSPAELPGGGEFDLWRD |
Ga0075030_1011335131 | 3300006162 | Watersheds | MESPGKDLLKLLVERDPASPEFRSGVRAVLHPSEMPANLEMDLWR |
Ga0099794_106306541 | 3300007265 | Vadose Zone Soil | MESQGKDLLRLLVERDPASPEFRSGVRAALHPAPHSALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAAALIWTIS |
Ga0066793_107782121 | 3300009029 | Prmafrost Soil | MESAGRRLLKLLVERDPASPEFRSGVCAALRPEGLPGGGEFDLWRDVFVQQKLPWGRFVQSALLHAAAVALIWT |
Ga0099829_107800661 | 3300009038 | Vadose Zone Soil | MESPGKNLLRLLVEQDPASPEFRSEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLP |
Ga0099830_101577103 | 3300009088 | Vadose Zone Soil | MESPGKNLLRLLVEQDPASPEFRIEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLPWGRFLQSALLHTAAVALIWATSLAWIRQ |
Ga0099792_104990041 | 3300009143 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALHTTELSGGEEVEFDLWRDVFVQQKLPWGRFLQS |
Ga0116222_10063481 | 3300009521 | Peatlands Soil | MESPEKKLLRLLVERDPARPEFISEFREALRPILRRAGFPGEDESDVWQEGLVQKKQPGGGSLHPG |
Ga0116221_10990251 | 3300009523 | Peatlands Soil | MESPGKNLLRLLVERDPASPEFRSGVRAALHPALRPAELPGNEDGEFDLWRDVFVQQKLPWGR |
Ga0116137_11010952 | 3300009549 | Peatland | MESPGKRLLRLLVERDPASPEFRSEVRAALRSPELPTELSGNENDEFDLWRDVFVQQ |
Ga0116114_10444931 | 3300009630 | Peatland | MESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDHEFDLWQDVFVQQKLPWGRFLQSALLHAVAVALIWALSLSWI |
Ga0116124_11219752 | 3300009634 | Peatland | MESPEKRLLRFLVEHDPASPEFNSEFRAALLPVLRRAEFPGEFDLWQDVFVQQKLPWGRFLQS |
Ga0116106_10272901 | 3300009645 | Peatland | MESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLS |
Ga0116106_12773861 | 3300009645 | Peatland | MESPGNNLLRLLVERDPASPEFRSGVRTALRSPELQAKLAGGGEFDLWRDVFVQQKLPWGRF |
Ga0116132_10963111 | 3300009646 | Peatland | MESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPDDKFDLWQDVFVQQKLPWGRFLQSALLH |
Ga0116215_14550591 | 3300009672 | Peatlands Soil | MESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFDLWRD |
Ga0116130_10546561 | 3300009762 | Peatland | MESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLSLSW |
Ga0116130_12683892 | 3300009762 | Peatland | MESPGNNLLRLLVERDPASPEFRSGVRTALRSPELQAKLAGGDEFDLWRDVFVQQKLPWGHFLQSALLHATAVALIYTISLAW |
Ga0116219_101156263 | 3300009824 | Peatlands Soil | MESPEKKLLRLLVERDPARPEFISEFREALRPILRRAEFPGDDEFDLWQDVFVQQKLPWGRFLQSALLHAAA |
Ga0099796_103367131 | 3300010159 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVRTALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLS |
Ga0074046_103178791 | 3300010339 | Bog Forest Soil | MESAGKELLKLLVERDPASPEFRSGVRAVLSPAKLPSDGERDLWRDVFVQQKLPWGRFLQSALLHVATVALLYTISLAWM |
Ga0074044_111294162 | 3300010343 | Bog Forest Soil | MESPEKRLLRLLVERDPARPEFMREFRAALQPVLRRSEFPDEFDLWRDVFVQQKLPWGRFLQ |
Ga0136449_1038381592 | 3300010379 | Peatlands Soil | MESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDDEFDLWQDVFVQQKLPWGRFLQSALLHAAAV |
Ga0150983_123744541 | 3300011120 | Forest Soil | MESPGKDLLRLLVDRDPASPEFRSGVRAALHPAPRPALRPTELPGAEEVEFDLWRDVFVQQKLPWGRFLESA |
Ga0150983_145578302 | 3300011120 | Forest Soil | MESPGKDLLRLSTERDPASPEFRSGVRAALHPAPRPALRPTELPGAGEFEFDLWRDVFVQQKLPWGRFLESALLHTVAAA |
Ga0137392_107705012 | 3300011269 | Vadose Zone Soil | MESPGKNLLRLLVEQDPASPEFRSEVRAALHPALRPSGLPGDDELAMWRDVFVQQKLPWG |
Ga0137363_110209291 | 3300012202 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTEFEEEEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLSWIRQQKI |
Ga0137362_115514751 | 3300012205 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPASHPAFRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAA |
Ga0137362_116798321 | 3300012205 | Vadose Zone Soil | MESQGKDLLRLLVERDPASPEFRSGVRAALHPAPHSALHPALRSTELPGDGEFDMWRDVFVQQRLPWGRFLQSALLHTAAVALIWTISLS |
Ga0137360_117108531 | 3300012361 | Vadose Zone Soil | MESPGKNLLRLLVEQDPASPEFRSEVRAALHSAPRPSELLGDDEFGMWRDVFVQQKLPWGRFLQSALLHTSAVALIWAISLSWIRQQKILDRA |
Ga0137361_111414851 | 3300012362 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPAVHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTIS |
Ga0137397_112521171 | 3300012685 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVLAALHPAPHAALRPTELPGGEEVEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLSWIRQQ |
Ga0181533_13760641 | 3300014152 | Bog | MESEEQRLLRLLLERAPAGVEFGDEVLTALRPASAPGDLPGNEDGEFDLWRDVFVQQKLPWGRFLQSALLH |
Ga0181524_104228252 | 3300014155 | Bog | MESPEKKLLRLLVERDPASPEFMSEFRAALRPVLSRAEFPGGHEFDMWRDVFVQQKLPWGRFLQ |
Ga0181518_106199602 | 3300014156 | Bog | MESPGNNLLRLLVERDPASPEFRSGVRTALRSPELQAKLAGGGEFDLWRDVFVQQRLPWGRFLQS |
Ga0181538_101921323 | 3300014162 | Bog | MESPEKRLLRLLVERDPARPEFASEFREALRPVLRRAEFPGDDALHLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLS |
Ga0181523_102870152 | 3300014165 | Bog | MESPEKRLLRLLVERDPARPEFVSEFRAALLPVLRRAEFPGEFDLWQDVFVQQKLPWGRFLQSALLHA |
Ga0182024_113706151 | 3300014501 | Permafrost | MESHGKNLLRLLVEHDPASAEFRDGVRAAFHPAADLPGDAPFDLRDVFVQQPLPWGRFLQSAVLHGAAAAMIWTLSISWL |
Ga0137418_100347915 | 3300015241 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAA |
Ga0187849_11098632 | 3300017929 | Peatland | MESPGKRLLRLLVERDPASPEFRSEVRAALRSPELPTELSGNEN |
Ga0187853_100250685 | 3300017940 | Peatland | MESPGKRLLRLLVERDPASPEFRSGVRAALRPADLPGDELGMWRDVFVQQ |
Ga0187850_104226651 | 3300017941 | Peatland | MESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLSLSWIRQG |
Ga0187817_100281894 | 3300017955 | Freshwater Sediment | MESTGKGLLKLLVEHDPASPEFRSGVQSVLALQEPAPELPSGREFDLWRDVFVQQKLPWG |
Ga0187891_11949322 | 3300017996 | Peatland | MESPGNNLLRLLVERDPASPEFRSGVREALRSRELSAELPGGDEFD |
Ga0187870_12155982 | 3300017998 | Peatland | MESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLH |
Ga0187870_12357692 | 3300017998 | Peatland | MESPGKRLLRLLVERDPASPEFRSEVRAALRSPELPTELSGNENDEF |
Ga0187876_12568171 | 3300018003 | Peatland | MESEEKRLLRLLLERAPAGVEFSDEALAALRPALAPGDLPGNEDGEFDLWRDVFVQQKLPWGRFPQSALLH |
Ga0187878_11830151 | 3300018005 | Peatland | MESPGKRLLRLLVERDPASPEFRSGVRAALRPADLPGDELGMWRDVFVQQDLPWRRFLQSALLHAAAVALIYTISLSWIRQQKILD |
Ga0187804_101880411 | 3300018006 | Freshwater Sediment | MESAGKRLLKLLVERDPASPEFRSGVQTVLGLQEPAAELPTNAEFDLWRDVFVQQKLPWGRFLQS |
Ga0187872_101009323 | 3300018017 | Peatland | MESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLSLSWIR |
Ga0187861_101645202 | 3300018020 | Peatland | MESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPDDKFDLWQDVFVQQKLPWGRFLQSALLHVAAVAL |
Ga0187882_11196491 | 3300018021 | Peatland | MESPAHRLLRLLVERAPTGVEFRDEVRAALRSEPGPGLRPERGPPDLPGDDEFDLWRDVFVQQKLPWGRFLQSALLHTAAAA |
Ga0187864_104920022 | 3300018022 | Peatland | MESPERRLLRLLVERAPTGVEFRDEVRAALRPAVAPADLPGDDEFGIWRDVFVQQKLPWGRFVQSALLHTAAVALIWAIS |
Ga0187885_100701091 | 3300018025 | Peatland | MESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIW |
Ga0187857_102190061 | 3300018026 | Peatland | MESPEKNLSRYLEERDPANLAYWRRVRGTRRPDAPGDDELGMWRDVFVQQRLPWGRFLQSAVLHAAAAALIYTISLAWIRQQHILDRAAFDRASLVTYSPEEY |
Ga0187862_106779482 | 3300018040 | Peatland | MESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDEFNLWQDVFVQQKLPWGRFLQSALLHVAAV |
Ga0187871_102132032 | 3300018042 | Peatland | MAPRIPPSGGNRRGSWLGRNLESEMESPEKRLLRLLVERDPARPEFVSEFREALRPILRRAEFPGDREFDLWRDVFVQQKLPWGRFLQSALLHAA |
Ga0210407_113977751 | 3300020579 | Soil | MESPGKDLLRLLVDRDPASPEFRSGVRAALHPAPRPALGPTGLPGAEEVEFDLWRDVFVQQKLPWGRFLQSALLHTAAVAL |
Ga0210401_101525821 | 3300020583 | Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALRPTELPGAEEVEFDLWRDVFVQQKLPWGRFLESALLHTAAVALIWTISLSWI |
Ga0210406_110123051 | 3300021168 | Soil | MESPGKDVLRLLVERDPASPEFRSGVRAALHPEPRPALRPTELPVDSEFDLW |
Ga0228598_10201613 | 3300024227 | Rhizosphere | MEFPWKKGKKLLRLLVERDPASAEFRSGVRATLRPPNLSENLPDNLMTTDEFGLWRDVFVEQELPWRRFLQSALLHTAA |
Ga0208479_10694292 | 3300025474 | Arctic Peat Soil | MESPEKELLRFLVERDPASPEFWHEVRSSLRPTELPGGDEFDLWRDVFVQQKLPWGRFLQSALLHAA |
Ga0209840_10035596 | 3300026223 | Soil | MEFPEKDLSKLLVERDPASLEFRSGVRAALSPAELPGGGEFDLWRDVFVQQKLPWGRFLQSALLHAAAVALIWTIS |
Ga0209839_100986982 | 3300026294 | Soil | MESPGKDLLKLLVERDPASPEFRDGVRAALHPSPLPGNAEYLWQDVFVEQPLPWGRFMQSVLLHGAALALIWTVSLSWIRQ |
Ga0257166_10307911 | 3300026358 | Soil | MESPGKNLLRLLVEQDPASPEFRSEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLPWGRFLQSAMLHAA |
Ga0257176_10235201 | 3300026361 | Soil | MESPGKNLLRLLVEQDPASPEFRIEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLSWIRQQKILDHAA |
Ga0257172_10528982 | 3300026482 | Soil | MESPGKNLLRLLVEQDPASPEFRIEVRAALHPALRPSGLPGDDEFGMW |
Ga0257160_10624512 | 3300026489 | Soil | MESPGKNLLRLLVEHDPASPEFRSGVRASLRPAREAGGGNADLDLWRD |
Ga0257153_10154873 | 3300026490 | Soil | MESPGKNLLRLLVEHDPASPEFRSGVSARLRPALEVGGGDADLDLWRDVFVQQKLPWGRFMQSALLHTAALGLIWAI |
Ga0257161_10142232 | 3300026508 | Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALRPTELPGAEEVEFDLWRDVFVPQKLPWGRF |
Ga0209056_107021871 | 3300026538 | Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQS |
Ga0208984_10446292 | 3300027546 | Forest Soil | MESPGTKVLRLLVECDPASPEFRSGVRAVLHPDSEACDGTFDLWRD |
Ga0208984_11090561 | 3300027546 | Forest Soil | MESPGKDLLRLWVERDPASPEFRSGVRAALHPAPRAALLPTELPGDSEFDLWRD |
Ga0208044_11508741 | 3300027625 | Peatlands Soil | MESPEKKLLRLLVERDPARPEFVSEFREALRPILRRAEFPGDDEFDLWQDVFVQQKLPWGRFLQSALLHA |
Ga0209117_11484181 | 3300027645 | Forest Soil | MDSAGKELLKLLVERDPTSPEFHSGVQSILGLQEPAADLPKDGEPDLWRDVFVQQKLPWGRFL |
Ga0209388_11766762 | 3300027655 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVLAALHPAPHAALRPTELPGGEEVEFDLWRDVFVQQKLP |
Ga0209009_10254871 | 3300027667 | Forest Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHAALRPTELPGGEEVEFDLWRDVFVQQKLPWGRFLQ |
Ga0209118_10691002 | 3300027674 | Forest Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALRPTELPGSEEDEFDLWRDVFVQQK |
Ga0209448_100856122 | 3300027783 | Bog Forest Soil | MESPGKRLLRLLVELDPASPKFRGEVRAALRPLLHRAEFRADEFDLWHDVFVQQRLPWERFLQSALLHAAAV |
Ga0209039_100493341 | 3300027825 | Bog Forest Soil | MESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFSMWRDVFVQQKLPWGRFLQSALLHAAAVALLWTITLSWIR |
Ga0209701_106934742 | 3300027862 | Vadose Zone Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTEFEEEEFDLWR |
Ga0209526_104916052 | 3300028047 | Forest Soil | MESPGTKVLRLLVECDPASPEFRTGVRAVLHPDSVIGDGTFDLWRDVFVQQNLPWGRFVQSAVLHAAAFGLIWVVSL |
Ga0247275_10364691 | 3300029817 | Soil | MESPAHRLLRLLVERAPTGVEFRDEVRAALRSEPGPGLRPELGPPDLPGDDEFDLWRDVFVQQKLPWGRFLQSALLHTAAAALIWTLSLSWLRQQKI |
Ga0247275_10565551 | 3300029817 | Soil | MESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDEFNLWQDVFVQQKLPWGRFLQ |
Ga0311368_107939981 | 3300029882 | Palsa | MESLGKRLLRLLVERDPASPEFRSEVRATLRPEESDDEFGLWQDVFVQQELPWKRFLQSALLHAASVALIWTISLSWIRQQ |
Ga0307482_12923011 | 3300030730 | Hardwood Forest Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTELLGSEEDEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWAISLSWMRQQKNSGSRRV |
Ga0307475_111164692 | 3300031754 | Hardwood Forest Soil | MESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPAELFGSEEDEFDLWRDVFVQQKLP |
Ga0307472_1012034802 | 3300032205 | Hardwood Forest Soil | MGKELLRLLVEHDPASPEFRSGVRAALHPEELPSDGERDLWQDVFVQQKLPWGRFLQSVLLHAATFG |
Ga0326726_113707052 | 3300033433 | Peat Soil | MESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFSMWRDVFVQQKLPWGRFLQSALLHATAVALLWTITLS |
Ga0371490_10450932 | 3300033561 | Peat Soil | MESPEKNLSRYLEERDPTNPAFWRRVWGARHAHPPDGDELGMWRDVFVQQRLPWGRFLQSALLHAAAVGLIYTISLAWIRQQHILDRAAFDRASLI |
Ga0334848_101979_279_506 | 3300033827 | Soil | MESPGNNLLRLLVERDPASPEFRSGVRAALRSPEPPAELPGGHESEFDLWRDVFVQQKLPWGRFLQSALLHATAVA |
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