NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F100452

Metagenome / Metatranscriptome Family F100452

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100452
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 72 residues
Representative Sequence MESAGKRLLRLLVERDPASPEFRSGVRAALRPEELPGGGEFDLWRDVFVQQKLPWGRFLQSALL
Number of Associated Samples 94
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 21.57 %
% of genes from short scaffolds (< 2000 bps) 20.59 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (81.373 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(15.686 % of family members)
Environment Ontology (ENVO) Unclassified
(40.196 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(46.078 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.65%    β-sheet: 0.00%    Coil/Unstructured: 54.35%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF14534DUF4440 6.86
PF04366Ysc84 5.88
PF03301Trp_dioxygenase 1.96
PF08241Methyltransf_11 0.98
PF10164BRI3 0.98
PF02416TatA_B_E 0.98
PF00990GGDEF 0.98
PF07366SnoaL 0.98
PF00005ABC_tran 0.98
PF00578AhpC-TSA 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG2930Lipid-binding SYLF domain, Ysc84/FYVE familyLipid transport and metabolism [I] 5.88
COG3483Tryptophan 2,3-dioxygenase (vermilion)Amino acid transport and metabolism [E] 1.96
COG1826Twin-arginine protein secretion pathway components TatA and TatBIntracellular trafficking, secretion, and vesicular transport [U] 0.98


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A81.37 %
All OrganismsrootAll Organisms18.63 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10174361All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300006162|Ga0075030_101133513All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300009521|Ga0116222_1006348All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5762Open in IMG/M
3300009549|Ga0116137_1101095All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300009630|Ga0116114_1044493All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1266Open in IMG/M
3300009634|Ga0116124_1121975All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300010339|Ga0074046_10317879All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium953Open in IMG/M
3300014165|Ga0181523_10287015All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300017929|Ga0187849_1109863All Organisms → cellular organisms → Bacteria1157Open in IMG/M
3300017996|Ga0187891_1194932All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300017998|Ga0187870_1235769All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300018005|Ga0187878_1183015All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300018006|Ga0187804_10188041Not Available879Open in IMG/M
3300018020|Ga0187861_10164520All Organisms → cellular organisms → Bacteria1014Open in IMG/M
3300018026|Ga0187857_10219006All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium883Open in IMG/M
3300020583|Ga0210401_10152582All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2159Open in IMG/M
3300025474|Ga0208479_1069429All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300026361|Ga0257176_1023520Not Available902Open in IMG/M
3300029817|Ga0247275_1036469All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium1447Open in IMG/M
3300030730|Ga0307482_1292301Not Available522Open in IMG/M
3300032205|Ga0307472_101203480Not Available724Open in IMG/M
3300033433|Ga0326726_11370705All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300033561|Ga0371490_1045093All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1332Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland15.69%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil14.71%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil9.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.82%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland7.84%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil6.86%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil4.90%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog4.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil2.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.96%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.96%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.96%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.96%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.96%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.98%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.98%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.98%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.98%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.98%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.98%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.98%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009549Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100EnvironmentalOpen in IMG/M
3300009630Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40EnvironmentalOpen in IMG/M
3300009634Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150EnvironmentalOpen in IMG/M
3300009645Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40EnvironmentalOpen in IMG/M
3300009646Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150EnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009762Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300014152Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaGEnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300014162Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017996Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40EnvironmentalOpen in IMG/M
3300017998Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150EnvironmentalOpen in IMG/M
3300018003Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_40EnvironmentalOpen in IMG/M
3300018005Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150EnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018020Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100EnvironmentalOpen in IMG/M
3300018021Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018025Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018040Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300024227Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4Host-AssociatedOpen in IMG/M
3300025474Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)EnvironmentalOpen in IMG/M
3300026223Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026361Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-BEnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026489Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-AEnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300026508Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-AEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027546Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027645Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027783Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300029817Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Bog25EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030730Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033561Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB28FN SIP fractionEnvironmentalOpen in IMG/M
3300033827Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1017436123300001356Peatlands SoilMESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFDLWRDVFVQQKLPWGRFLQSALLHAAAVALLWT
JGI12635J15846_1049057633300001593Forest SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALRPTELPGSEEPEF
JGI12635J15846_1067826913300001593Forest SoilMESAGKRLLRLLVERDPASPEFRSGVRAALRPEELPGGGEFDLWRDVFVQQKLPWGRFLQSALL
JGI25617J43924_1036276123300002914Grasslands SoilMDSAGKELLKLLVERDPASPEFRSGVQTVLGLQELATGLPSDGEFDLWRDVFVQQKLPWGRFLQS
JGI25616J43925_1037723813300002917Grasslands SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQK
JGI26341J46601_1016855313300003219Bog Forest SoilMESPGKNLLKLLVEHDPASPEFRSEVRAAFRPASAVPYQPGGHEFDMWRDVFVQQKLPWGRFLQSALLHTTAVALIWTLSFAWLRQQRILDR
Ga0062389_10170656213300004092Bog Forest SoilMESPGKRLLKLLLEHDPASPVRSGVQAALGPVAGQAEVPVDGEFDLWRDVFVQQRLP
Ga0062386_10029880413300004152Bog Forest SoilMESPEKNLLRLLVERDPASPEFRSGVRAALSRSESPAELASDGEFDLWRDVFVQQKLPWGRFLQSAVLHAAAFALLYAISLAWIRQQKI
Ga0066680_1009145543300005174SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAAA
Ga0070711_10153237413300005439Corn, Switchgrass And Miscanthus RhizosphereMESPGKNLLRLLVEHDPTSPEFRSGVRASLRPARDAGGGDADLDLWRDVFVQQKLPWGRFMQSALLHTAALGLIWAI
Ga0070706_10112487313300005467Corn, Switchgrass And Miscanthus RhizosphereMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTELLGSEEDQFDLWRDVFVQ
Ga0066795_1012731713300005938SoilMEFPEKDLSKLLVERDPASLEFRSGVRAALSPAELPGGGEFDLWRD
Ga0075030_10113351313300006162WatershedsMESPGKDLLKLLVERDPASPEFRSGVRAVLHPSEMPANLEMDLWR
Ga0099794_1063065413300007265Vadose Zone SoilMESQGKDLLRLLVERDPASPEFRSGVRAALHPAPHSALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAAALIWTIS
Ga0066793_1077821213300009029Prmafrost SoilMESAGRRLLKLLVERDPASPEFRSGVCAALRPEGLPGGGEFDLWRDVFVQQKLPWGRFVQSALLHAAAVALIWT
Ga0099829_1078006613300009038Vadose Zone SoilMESPGKNLLRLLVEQDPASPEFRSEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLP
Ga0099830_1015771033300009088Vadose Zone SoilMESPGKNLLRLLVEQDPASPEFRIEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLPWGRFLQSALLHTAAVALIWATSLAWIRQ
Ga0099792_1049900413300009143Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALHTTELSGGEEVEFDLWRDVFVQQKLPWGRFLQS
Ga0116222_100634813300009521Peatlands SoilMESPEKKLLRLLVERDPARPEFISEFREALRPILRRAGFPGEDESDVWQEGLVQKKQPGGGSLHPG
Ga0116221_109902513300009523Peatlands SoilMESPGKNLLRLLVERDPASPEFRSGVRAALHPALRPAELPGNEDGEFDLWRDVFVQQKLPWGR
Ga0116137_110109523300009549PeatlandMESPGKRLLRLLVERDPASPEFRSEVRAALRSPELPTELSGNENDEFDLWRDVFVQQ
Ga0116114_104449313300009630PeatlandMESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDHEFDLWQDVFVQQKLPWGRFLQSALLHAVAVALIWALSLSWI
Ga0116124_112197523300009634PeatlandMESPEKRLLRFLVEHDPASPEFNSEFRAALLPVLRRAEFPGEFDLWQDVFVQQKLPWGRFLQS
Ga0116106_102729013300009645PeatlandMESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLS
Ga0116106_127738613300009645PeatlandMESPGNNLLRLLVERDPASPEFRSGVRTALRSPELQAKLAGGGEFDLWRDVFVQQKLPWGRF
Ga0116132_109631113300009646PeatlandMESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPDDKFDLWQDVFVQQKLPWGRFLQSALLH
Ga0116215_145505913300009672Peatlands SoilMESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFDLWRD
Ga0116130_105465613300009762PeatlandMESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLSLSW
Ga0116130_126838923300009762PeatlandMESPGNNLLRLLVERDPASPEFRSGVRTALRSPELQAKLAGGDEFDLWRDVFVQQKLPWGHFLQSALLHATAVALIYTISLAW
Ga0116219_1011562633300009824Peatlands SoilMESPEKKLLRLLVERDPARPEFISEFREALRPILRRAEFPGDDEFDLWQDVFVQQKLPWGRFLQSALLHAAA
Ga0099796_1033671313300010159Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVRTALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLS
Ga0074046_1031787913300010339Bog Forest SoilMESAGKELLKLLVERDPASPEFRSGVRAVLSPAKLPSDGERDLWRDVFVQQKLPWGRFLQSALLHVATVALLYTISLAWM
Ga0074044_1112941623300010343Bog Forest SoilMESPEKRLLRLLVERDPARPEFMREFRAALQPVLRRSEFPDEFDLWRDVFVQQKLPWGRFLQ
Ga0136449_10383815923300010379Peatlands SoilMESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDDEFDLWQDVFVQQKLPWGRFLQSALLHAAAV
Ga0150983_1237445413300011120Forest SoilMESPGKDLLRLLVDRDPASPEFRSGVRAALHPAPRPALRPTELPGAEEVEFDLWRDVFVQQKLPWGRFLESA
Ga0150983_1455783023300011120Forest SoilMESPGKDLLRLSTERDPASPEFRSGVRAALHPAPRPALRPTELPGAGEFEFDLWRDVFVQQKLPWGRFLESALLHTVAAA
Ga0137392_1077050123300011269Vadose Zone SoilMESPGKNLLRLLVEQDPASPEFRSEVRAALHPALRPSGLPGDDELAMWRDVFVQQKLPWG
Ga0137363_1102092913300012202Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTEFEEEEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLSWIRQQKI
Ga0137362_1155147513300012205Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPASHPAFRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAA
Ga0137362_1167983213300012205Vadose Zone SoilMESQGKDLLRLLVERDPASPEFRSGVRAALHPAPHSALHPALRSTELPGDGEFDMWRDVFVQQRLPWGRFLQSALLHTAAVALIWTISLS
Ga0137360_1171085313300012361Vadose Zone SoilMESPGKNLLRLLVEQDPASPEFRSEVRAALHSAPRPSELLGDDEFGMWRDVFVQQKLPWGRFLQSALLHTSAVALIWAISLSWIRQQKILDRA
Ga0137361_1114148513300012362Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPAVHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTIS
Ga0137397_1125211713300012685Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVLAALHPAPHAALRPTELPGGEEVEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLSWIRQQ
Ga0181533_137606413300014152BogMESEEQRLLRLLLERAPAGVEFGDEVLTALRPASAPGDLPGNEDGEFDLWRDVFVQQKLPWGRFLQSALLH
Ga0181524_1042282523300014155BogMESPEKKLLRLLVERDPASPEFMSEFRAALRPVLSRAEFPGGHEFDMWRDVFVQQKLPWGRFLQ
Ga0181518_1061996023300014156BogMESPGNNLLRLLVERDPASPEFRSGVRTALRSPELQAKLAGGGEFDLWRDVFVQQRLPWGRFLQS
Ga0181538_1019213233300014162BogMESPEKRLLRLLVERDPARPEFASEFREALRPVLRRAEFPGDDALHLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLS
Ga0181523_1028701523300014165BogMESPEKRLLRLLVERDPARPEFVSEFRAALLPVLRRAEFPGEFDLWQDVFVQQKLPWGRFLQSALLHA
Ga0182024_1137061513300014501PermafrostMESHGKNLLRLLVEHDPASAEFRDGVRAAFHPAADLPGDAPFDLRDVFVQQPLPWGRFLQSAVLHGAAAAMIWTLSISWL
Ga0137418_1003479153300015241Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQSALLHTAA
Ga0187849_110986323300017929PeatlandMESPGKRLLRLLVERDPASPEFRSEVRAALRSPELPTELSGNEN
Ga0187853_1002506853300017940PeatlandMESPGKRLLRLLVERDPASPEFRSGVRAALRPADLPGDELGMWRDVFVQQ
Ga0187850_1042266513300017941PeatlandMESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLSLSWIRQG
Ga0187817_1002818943300017955Freshwater SedimentMESTGKGLLKLLVEHDPASPEFRSGVQSVLALQEPAPELPSGREFDLWRDVFVQQKLPWG
Ga0187891_119493223300017996PeatlandMESPGNNLLRLLVERDPASPEFRSGVREALRSRELSAELPGGDEFD
Ga0187870_121559823300017998PeatlandMESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLH
Ga0187870_123576923300017998PeatlandMESPGKRLLRLLVERDPASPEFRSEVRAALRSPELPTELSGNENDEF
Ga0187876_125681713300018003PeatlandMESEEKRLLRLLLERAPAGVEFSDEALAALRPALAPGDLPGNEDGEFDLWRDVFVQQKLPWGRFPQSALLH
Ga0187878_118301513300018005PeatlandMESPGKRLLRLLVERDPASPEFRSGVRAALRPADLPGDELGMWRDVFVQQDLPWRRFLQSALLHAAAVALIYTISLSWIRQQKILD
Ga0187804_1018804113300018006Freshwater SedimentMESAGKRLLKLLVERDPASPEFRSGVQTVLGLQEPAAELPTNAEFDLWRDVFVQQKLPWGRFLQS
Ga0187872_1010093233300018017PeatlandMESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIWTLSLSWIR
Ga0187861_1016452023300018020PeatlandMESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPDDKFDLWQDVFVQQKLPWGRFLQSALLHVAAVAL
Ga0187882_111964913300018021PeatlandMESPAHRLLRLLVERAPTGVEFRDEVRAALRSEPGPGLRPERGPPDLPGDDEFDLWRDVFVQQKLPWGRFLQSALLHTAAAA
Ga0187864_1049200223300018022PeatlandMESPERRLLRLLVERAPTGVEFRDEVRAALRPAVAPADLPGDDEFGIWRDVFVQQKLPWGRFVQSALLHTAAVALIWAIS
Ga0187885_1007010913300018025PeatlandMESPEKRLLRLLVERDPARPEFVSEFREALRPVLRRAEFPGPDEDDEFDLWQDVFVEQKLPWGRFLQSALLHAAAVALIW
Ga0187857_1021900613300018026PeatlandMESPEKNLSRYLEERDPANLAYWRRVRGTRRPDAPGDDELGMWRDVFVQQRLPWGRFLQSAVLHAAAAALIYTISLAWIRQQHILDRAAFDRASLVTYSPEEY
Ga0187862_1067794823300018040PeatlandMESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDEFNLWQDVFVQQKLPWGRFLQSALLHVAAV
Ga0187871_1021320323300018042PeatlandMAPRIPPSGGNRRGSWLGRNLESEMESPEKRLLRLLVERDPARPEFVSEFREALRPILRRAEFPGDREFDLWRDVFVQQKLPWGRFLQSALLHAA
Ga0210407_1139777513300020579SoilMESPGKDLLRLLVDRDPASPEFRSGVRAALHPAPRPALGPTGLPGAEEVEFDLWRDVFVQQKLPWGRFLQSALLHTAAVAL
Ga0210401_1015258213300020583SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHPALRPTELPGAEEVEFDLWRDVFVQQKLPWGRFLESALLHTAAVALIWTISLSWI
Ga0210406_1101230513300021168SoilMESPGKDVLRLLVERDPASPEFRSGVRAALHPEPRPALRPTELPVDSEFDLW
Ga0228598_102016133300024227RhizosphereMEFPWKKGKKLLRLLVERDPASAEFRSGVRATLRPPNLSENLPDNLMTTDEFGLWRDVFVEQELPWRRFLQSALLHTAA
Ga0208479_106942923300025474Arctic Peat SoilMESPEKELLRFLVERDPASPEFWHEVRSSLRPTELPGGDEFDLWRDVFVQQKLPWGRFLQSALLHAA
Ga0209840_100355963300026223SoilMEFPEKDLSKLLVERDPASLEFRSGVRAALSPAELPGGGEFDLWRDVFVQQKLPWGRFLQSALLHAAAVALIWTIS
Ga0209839_1009869823300026294SoilMESPGKDLLKLLVERDPASPEFRDGVRAALHPSPLPGNAEYLWQDVFVEQPLPWGRFMQSVLLHGAALALIWTVSLSWIRQ
Ga0257166_103079113300026358SoilMESPGKNLLRLLVEQDPASPEFRSEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLPWGRFLQSAMLHAA
Ga0257176_102352013300026361SoilMESPGKNLLRLLVEQDPASPEFRIEVRAALHPALRPSGLPGDDEFGMWRDVFVQQKLPWGRFLQSALLHTAAVALIWTISLSWIRQQKILDHAA
Ga0257172_105289823300026482SoilMESPGKNLLRLLVEQDPASPEFRIEVRAALHPALRPSGLPGDDEFGMW
Ga0257160_106245123300026489SoilMESPGKNLLRLLVEHDPASPEFRSGVRASLRPAREAGGGNADLDLWRD
Ga0257153_101548733300026490SoilMESPGKNLLRLLVEHDPASPEFRSGVSARLRPALEVGGGDADLDLWRDVFVQQKLPWGRFMQSALLHTAALGLIWAI
Ga0257161_101422323300026508SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALRPTELPGAEEVEFDLWRDVFVPQKLPWGRF
Ga0209056_1070218713300026538SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPALHPALRSTELPGDGEFDLWRDVFVQQKLPWGRFLQS
Ga0208984_104462923300027546Forest SoilMESPGTKVLRLLVECDPASPEFRSGVRAVLHPDSEACDGTFDLWRD
Ga0208984_110905613300027546Forest SoilMESPGKDLLRLWVERDPASPEFRSGVRAALHPAPRAALLPTELPGDSEFDLWRD
Ga0208044_115087413300027625Peatlands SoilMESPEKKLLRLLVERDPARPEFVSEFREALRPILRRAEFPGDDEFDLWQDVFVQQKLPWGRFLQSALLHA
Ga0209117_114841813300027645Forest SoilMDSAGKELLKLLVERDPTSPEFHSGVQSILGLQEPAADLPKDGEPDLWRDVFVQQKLPWGRFL
Ga0209388_117667623300027655Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVLAALHPAPHAALRPTELPGGEEVEFDLWRDVFVQQKLP
Ga0209009_102548713300027667Forest SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPHAALRPTELPGGEEVEFDLWRDVFVQQKLPWGRFLQ
Ga0209118_106910023300027674Forest SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPALRPTELPGSEEDEFDLWRDVFVQQK
Ga0209448_1008561223300027783Bog Forest SoilMESPGKRLLRLLVELDPASPKFRGEVRAALRPLLHRAEFRADEFDLWHDVFVQQRLPWERFLQSALLHAAAV
Ga0209039_1004933413300027825Bog Forest SoilMESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFSMWRDVFVQQKLPWGRFLQSALLHAAAVALLWTITLSWIR
Ga0209701_1069347423300027862Vadose Zone SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTEFEEEEFDLWR
Ga0209526_1049160523300028047Forest SoilMESPGTKVLRLLVECDPASPEFRTGVRAVLHPDSVIGDGTFDLWRDVFVQQNLPWGRFVQSAVLHAAAFGLIWVVSL
Ga0247275_103646913300029817SoilMESPAHRLLRLLVERAPTGVEFRDEVRAALRSEPGPGLRPELGPPDLPGDDEFDLWRDVFVQQKLPWGRFLQSALLHTAAAALIWTLSLSWLRQQKI
Ga0247275_105655513300029817SoilMESPETRLLRLLVERDPARPEFISEFREALRPILRRAEFPGDEFNLWQDVFVQQKLPWGRFLQ
Ga0311368_1079399813300029882PalsaMESLGKRLLRLLVERDPASPEFRSEVRATLRPEESDDEFGLWQDVFVQQELPWKRFLQSALLHAASVALIWTISLSWIRQQ
Ga0307482_129230113300030730Hardwood Forest SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPTELLGSEEDEFDLWRDVFVQQKLPWGRFLQSALLHTAAVALIWAISLSWMRQQKNSGSRRV
Ga0307475_1111646923300031754Hardwood Forest SoilMESPGKDLLRLLVERDPASPEFRSGVRAALHPAPRPAELFGSEEDEFDLWRDVFVQQKLP
Ga0307472_10120348023300032205Hardwood Forest SoilMGKELLRLLVEHDPASPEFRSGVRAALHPEELPSDGERDLWQDVFVQQKLPWGRFLQSVLLHAATFG
Ga0326726_1137070523300033433Peat SoilMESPGKNLLRLLVERDPASPEFRSGVRAVLHPTDLPGDDEFSMWRDVFVQQKLPWGRFLQSALLHATAVALLWTITLS
Ga0371490_104509323300033561Peat SoilMESPEKNLSRYLEERDPTNPAFWRRVWGARHAHPPDGDELGMWRDVFVQQRLPWGRFLQSALLHAAAVGLIYTISLAWIRQQHILDRAAFDRASLI
Ga0334848_101979_279_5063300033827SoilMESPGNNLLRLLVERDPASPEFRSGVRAALRSPEPPAELPGGHESEFDLWRDVFVQQKLPWGRFLQSALLHATAVA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.