Metagenome Family F100265

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100265
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	84 residues
Representative Sequence	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.61 %
% of genes near scaffold ends (potentially truncated)	38.24 %
% of genes from short scaffolds (< 2000 bps)	79.41 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.804 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (22.549 % of family members)
Environment Ontology (ENVO)	Unclassified (36.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.65% β-sheet: 21.93% Coil/Unstructured: 68.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03795	YCII	8.82
PF05995	CDO_I	6.86
PF02580	Tyr_Deacylase	5.88
PF03129	HGTP_anticodon	3.92
PF00903	Glyoxalase	3.92
PF12681	Glyoxalase_2	3.92
PF06831	H2TH	2.94
PF10502	Peptidase_S26	2.94
PF11967	RecO_N	2.94
PF08241	Methyltransf_11	1.96
PF06827	zf-FPG_IleRS	1.96
PF08818	DUF1801	1.96
PF00027	cNMP_binding	0.98
PF08450	SGL	0.98
PF04389	Peptidase_M28	0.98
PF03176	MMPL	0.98
PF01336	tRNA_anti-codon	0.98
PF02565	RecO_C	0.98
PF00085	Thioredoxin	0.98
PF03618	Kinase-PPPase	0.98
PF01676	Metalloenzyme	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	8.82
COG5553	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	General function prediction only [R]	6.86
COG1490	D-aminoacyl-tRNA deacylase	Translation, ribosomal structure and biogenesis [J]	5.88
COG0423	Glycyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	3.92
COG0441	Threonyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	3.92
COG0442	Prolyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	3.92
COG0124	Histidyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	3.92
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	2.94
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.96
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.96
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.98
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.98
COG2409	Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamily	General function prediction only [R]	0.98
COG1806	Regulator of PEP synthase PpsR, kinase-PPPase family (combines ADP:protein kinase and phosphorylase activities)	Signal transduction mechanisms [T]	0.98
COG1381	Recombinational DNA repair protein RecO (RecF pathway)	Replication, recombination and repair [L]	0.98
COG1033	Predicted exporter protein, RND superfamily	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.80 %
Unclassified	root	N/A	40.20 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.16 %
Unclassified	root	N/A	40.20 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.24 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.67 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.94 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.94 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.98 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.94 %
Acrocarpospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora	0.98 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.20 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.73 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.94 %
Acrocarpospora corrugata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	0.98 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000881\|JGI10215J12807_1080850	Not Available	520	Open in IMG/M
3300000890\|JGI11643J12802_10630841	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300000956\|JGI10216J12902_103687915	Not Available	1145	Open in IMG/M
3300000956\|JGI10216J12902_123585430	Not Available	807	Open in IMG/M
3300002075\|JGI24738J21930_10108573	Not Available	597	Open in IMG/M
3300003987\|Ga0055471_10083493	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300004156\|Ga0062589_100313468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1221	Open in IMG/M
3300004156\|Ga0062589_100816602	Not Available	847	Open in IMG/M
3300004156\|Ga0062589_101954495	Not Available	593	Open in IMG/M
3300004157\|Ga0062590_100473580	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300004463\|Ga0063356_102559470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	783	Open in IMG/M
3300004480\|Ga0062592_102524783	Not Available	517	Open in IMG/M
3300004643\|Ga0062591_101725694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	636	Open in IMG/M
3300005093\|Ga0062594_102214742	Not Available	595	Open in IMG/M
3300005093\|Ga0062594_102615933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	557	Open in IMG/M
3300005327\|Ga0070658_10013411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6576	Open in IMG/M
3300005329\|Ga0070683_100070504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3260	Open in IMG/M
3300005334\|Ga0068869_100071939	All Organisms → cellular organisms → Bacteria	2562	Open in IMG/M
3300005337\|Ga0070682_100203729	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300005338\|Ga0068868_100192679	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300005339\|Ga0070660_100004773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9376	Open in IMG/M
3300005347\|Ga0070668_101371038	Not Available	644	Open in IMG/M
3300005356\|Ga0070674_100602040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	929	Open in IMG/M
3300005459\|Ga0068867_100810742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	836	Open in IMG/M
3300005530\|Ga0070679_100115187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2673	Open in IMG/M
3300005535\|Ga0070684_101753091	Not Available	586	Open in IMG/M
3300005539\|Ga0068853_100853416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	873	Open in IMG/M
3300005545\|Ga0070695_100291454	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300005719\|Ga0068861_100215147	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1621	Open in IMG/M
3300009098\|Ga0105245_10016680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6413	Open in IMG/M
3300009098\|Ga0105245_10319648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1529	Open in IMG/M
3300009156\|Ga0111538_11932595	Not Available	742	Open in IMG/M
3300009177\|Ga0105248_10052412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4578	Open in IMG/M
3300009545\|Ga0105237_10272282	All Organisms → cellular organisms → Bacteria	1696	Open in IMG/M
3300010375\|Ga0105239_10031224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	5860	Open in IMG/M
3300010400\|Ga0134122_12959262	Not Available	529	Open in IMG/M
3300011119\|Ga0105246_10131906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1867	Open in IMG/M
3300011119\|Ga0105246_10530465	Not Available	1005	Open in IMG/M
3300012895\|Ga0157309_10134424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	720	Open in IMG/M
3300012900\|Ga0157292_10031965	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300012902\|Ga0157291_10131194	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300012909\|Ga0157290_10289355	Not Available	599	Open in IMG/M
3300012910\|Ga0157308_10201300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	672	Open in IMG/M
3300012943\|Ga0164241_10128231	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M
3300012943\|Ga0164241_11441709	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	506	Open in IMG/M
3300012961\|Ga0164302_11187934	Not Available	609	Open in IMG/M
3300013297\|Ga0157378_10140821	All Organisms → cellular organisms → Bacteria	2240	Open in IMG/M
3300015077\|Ga0173483_10075348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1351	Open in IMG/M
3300015200\|Ga0173480_10259727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	950	Open in IMG/M
3300015201\|Ga0173478_10033399	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1576	Open in IMG/M
3300015374\|Ga0132255_104739356	Not Available	576	Open in IMG/M
3300017965\|Ga0190266_10182680	Not Available	982	Open in IMG/M
3300017965\|Ga0190266_10387866	Not Available	769	Open in IMG/M
3300018073\|Ga0184624_10369066	Not Available	641	Open in IMG/M
3300018466\|Ga0190268_10340596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	927	Open in IMG/M
3300018469\|Ga0190270_10024177	All Organisms → cellular organisms → Bacteria	3827	Open in IMG/M
3300018469\|Ga0190270_10109530	All Organisms → cellular organisms → Bacteria	2141	Open in IMG/M
3300018469\|Ga0190270_11606192	Not Available	702	Open in IMG/M
3300018476\|Ga0190274_11647656	Not Available	735	Open in IMG/M
3300018476\|Ga0190274_12119398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Acrocarpospora → Acrocarpospora corrugata	659	Open in IMG/M
3300018481\|Ga0190271_13176203	Not Available	551	Open in IMG/M
3300019361\|Ga0173482_10136938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	937	Open in IMG/M
3300019361\|Ga0173482_10337082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	678	Open in IMG/M
3300022901\|Ga0247788_1026721	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1026	Open in IMG/M
3300023102\|Ga0247754_1035836	All Organisms → cellular organisms → Bacteria	1126	Open in IMG/M
3300023275\|Ga0247776_10057508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1518	Open in IMG/M
3300025899\|Ga0207642_10707266	Not Available	635	Open in IMG/M
3300025901\|Ga0207688_10002754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9524	Open in IMG/M
3300025909\|Ga0207705_10115409	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1987	Open in IMG/M
3300025914\|Ga0207671_10347586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1176	Open in IMG/M
3300025919\|Ga0207657_10003420	All Organisms → cellular organisms → Bacteria	16946	Open in IMG/M
3300025921\|Ga0207652_10138265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2176	Open in IMG/M
3300025935\|Ga0207709_10020734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3712	Open in IMG/M
3300025938\|Ga0207704_10295036	Not Available	1239	Open in IMG/M
3300025940\|Ga0207691_10028616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5217	Open in IMG/M
3300025940\|Ga0207691_10979012	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300025944\|Ga0207661_10010909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6560	Open in IMG/M
3300025944\|Ga0207661_10080605	All Organisms → cellular organisms → Bacteria	2686	Open in IMG/M
3300025949\|Ga0207667_11208792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300025972\|Ga0207668_11484341	Not Available	612	Open in IMG/M
3300026023\|Ga0207677_11962115	Not Available	544	Open in IMG/M
3300026067\|Ga0207678_10075239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2892	Open in IMG/M
3300026078\|Ga0207702_10149897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2120	Open in IMG/M
3300026118\|Ga0207675_100314410	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1528	Open in IMG/M
3300026121\|Ga0207683_10059187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3365	Open in IMG/M
3300026121\|Ga0207683_12090967	Not Available	514	Open in IMG/M
3300027384\|Ga0209854_1097825	Not Available	525	Open in IMG/M
3300028597\|Ga0247820_10233840	Not Available	1182	Open in IMG/M
3300028809\|Ga0247824_10368626	Not Available	823	Open in IMG/M
3300028812\|Ga0247825_10696085	Not Available	731	Open in IMG/M
3300028812\|Ga0247825_10949714	Not Available	624	Open in IMG/M
3300030006\|Ga0299907_10624029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	835	Open in IMG/M
3300031858\|Ga0310892_10991485	Not Available	592	Open in IMG/M
3300031892\|Ga0310893_10163147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	875	Open in IMG/M
3300031908\|Ga0310900_10716764	Not Available	802	Open in IMG/M
3300032000\|Ga0310903_10557138	Not Available	605	Open in IMG/M
3300032075\|Ga0310890_10581357	Not Available	864	Open in IMG/M
3300033550\|Ga0247829_10156607	Not Available	1779	Open in IMG/M
3300033814\|Ga0364930_0090008	Not Available	1047	Open in IMG/M
3300034165\|Ga0364942_0090213	Not Available	990	Open in IMG/M
3300034176\|Ga0364931_0168389	Not Available	709	Open in IMG/M
3300034354\|Ga0364943_0223636	Not Available	697	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.75%
Host-Associated	Host-Associated	37.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.78%
Plants	Host-Associated → Plants	37.25%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.67%
Floodplain	Environmental → Terrestrial → Floodplain	3.92%
Marine	Environmental → Aquatic → Marine	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.06%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.80%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	9.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.84%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012900	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S179-409R-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027384	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10215J12807_10808502	3300000881	Soil	VRLFRRRSTSEPSPRKGPDSAPVEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHNEWLTWEQAEEFARTRRLPIEDV*
JGI11643J12802_106308412	3300000890	Soil	MPWLRRRSERARSDGHVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTWEQAQEFAQKRGLPIEDV*
JGI10216J12902_1036879151	3300000956	Soil	MGWFRRVRTTPASPVDDPDEPIEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPDVTLEDLHDWVTWEQAEEFAQRRELPIDEV
JGI10216J12902_1235854301	3300000956	Soil	MRWFRRRAHSPSHPAESEEPIEVGGERIVFWKAKSEEVDGEIFGPVWIADANNPDVRLEEPDEWVSWEQAQEFARKR
JGI24738J21930_101085731	3300002075	Corn Rhizosphere	DRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV*
Ga0055471_100834932	3300003987	Natural And Restored Wetlands	MPWLRRRSQRARSDGQVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIVDANDPNVTLEEHDEWLTWEQAEEFAQKRGLPIEDV*
Ga0062589_1003134683	3300004156	Soil	MPWLRRRSERARSDGHVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTWVQAEEFAQKRGLPIEDV*
Ga0062589_1008166021	3300004156	Soil	RRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0062589_1019544952	3300004156	Soil	VRWFRRTQPPSSPQDETVEPIEVGSDRIVFWKAKSEEVEGEIYGPVWIASADDPSITLEEPTEWVTWEQAEAFARRRELPIEDV*
Ga0062590_1004735802	3300004157	Soil	MPWLRRRSERARSDGHVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTWEQAEEFAQKRGLPIEDV*
Ga0063356_1025594702	3300004463	Arabidopsis Thaliana Rhizosphere	MPWLRRRSERARSDGHVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTW
Ga0062592_1025247831	3300004480	Soil	MRWFRRRSEEASLSRDEPEESIEVGGDRIVFWKAKSEEVKGEIYGPVWIADANDPDVTLEEHDEWLSYEQAEEFAEKRGLPLEET*
Ga0062591_1017256941	3300004643	Soil	MPWLRRRSERARSDGHVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTWEQAQE
Ga0062594_1022147422	3300005093	Soil	SPGRRRAPRLSLMGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0062594_1026159332	3300005093	Soil	LVSPSPRKDPARDRNEHRESVDVGGDRLVFWKAKSEEVEGENYGPVWIADANDPNVTLEEHDAWLTWEH
Ga0070658_100134118	3300005327	Corn Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0070683_1000705042	3300005329	Corn Rhizosphere	MGWFRRRRATTPAPDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0068869_1000719395	3300005334	Miscanthus Rhizosphere	TPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0070682_1002037291	3300005337	Corn Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0068868_1001926791	3300005338	Miscanthus Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEKHDAWLTWEHAEEFARKRGLPIEDV*
Ga0070660_1000047738	3300005339	Corn Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV*
Ga0070668_1013710381	3300005347	Switchgrass Rhizosphere	RRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEKHDAWLTWEHAEEFARKRGLPIEDV*
Ga0070674_1006020402	3300005356	Miscanthus Rhizosphere	VGWFRRTRHPSVAPDADADEPIEVGGDRIVFWKAKSEEVEGETYGPVWIADANDPNVTLEEPAEWVTWEQAEEFARKRQLPVEDV*
Ga0068867_1008107422	3300005459	Miscanthus Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEH
Ga0070679_1001151874	3300005530	Corn Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV*
Ga0070684_1017530911	3300005535	Corn Rhizosphere	VRLFRRRSTSEPSPIKEPASAPVEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHNEWLTWEQAEEFARTRRLPIEDV*
Ga0068853_1008534162	3300005539	Corn Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEHTEEFARKGGLPIEDV*
Ga0070695_1002914541	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MGWFRRRRATTPAPDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEKHDAWLTWEHAEEFARKRGLPIEDV*
Ga0068861_1002151471	3300005719	Switchgrass Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEQAEEFARKRGLPIEDV*
Ga0105245_100166801	3300009098	Miscanthus Rhizosphere	LVSPSPRKDPARDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDM*
Ga0105245_103196482	3300009098	Miscanthus Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV*
Ga0111538_119325951	3300009156	Populus Rhizosphere	MGWFRRRSAAPPAPDRDGHEEPVEVGGERLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHAEWLTWEHAEEFARKRGLPIEDV*
Ga0105248_100524128	3300009177	Switchgrass Rhizosphere	RRAPRLSLMGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0105237_102722823	3300009545	Corn Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEQAEEFARKRGLPIEDV*
Ga0105239_100312246	3300010375	Corn Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEQAEEFARKRGLPIEDV*
Ga0134122_129592622	3300010400	Terrestrial Soil	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEKHDAWLTWE
Ga0105246_101319062	3300011119	Miscanthus Rhizosphere	VRLFRRRSTSEPLPSKELDTAPVEVGGDRMVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDEWLTWEQAEEFARTRKLPIEDV*
Ga0105246_105304652	3300011119	Miscanthus Rhizosphere	LVSPSPRKDPARDRNEHRESVDVGGDRLVFWKAKSEEVEGENYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV*
Ga0157309_101344242	3300012895	Soil	VGWFRRTRHPSVAPDADADEPIEVGGDRIVFWKAKSEEVEGETYGPVWIADANDPDVTLEEPAEWVTWEQAEEFARKRQL
Ga0157292_100319653	3300012900	Soil	MGWFRRRRATTPARDRNEHRESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0157291_101311942	3300012902	Soil	GVRRLSIVRWFRRTQPPSSPQDETVEPIEVGSDRIVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKGGLPIEDV*
Ga0157290_102893551	3300012909	Soil	VRLFRRRSTFEPLPSKGPDTAPVEVEGDRMVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDEWLTWEQAEEFARTRRLPIEDV*
Ga0157308_102013002	3300012910	Soil	VGWFRRTRHPSVAPDADADEPIEVGGDRIVFWKAKSEEVEGETYGPVWIADANDPDVTLEEPAEWVTWEQAEEFARKRQLPVEDV*
Ga0164241_101282312	3300012943	Soil	MPWFRRRSERAPSHGQVEPAESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTWEQAEEFAQKRGLPIEDV*
Ga0164241_114417091	3300012943	Soil	MPWLRRRSERARSDGHVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTWEQA
Ga0164302_111879341	3300012961	Soil	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0157378_101408211	3300013297	Miscanthus Rhizosphere	TPAPDRNEHTESVDVGGDRLVFWKAKSEELEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV*
Ga0173483_100753482	3300015077	Soil	VRLFRRRSTSEPLPSKGPDTAPVEVEGDRMVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDEWLTWEQAEEFARTRRLPIEDV*
Ga0173480_102597272	3300015200	Soil	VGWFRRTRHPSVAPDADADEPIEVGGDRIVFWKAKSEEVEGETYGPVWIADANDPDVTLEEPAEWVTWEQAEEFA
Ga0173478_100333991	3300015201	Soil	PRLSLMGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEKHDAWLTWEHAEEFARKRGLPIEDV*
Ga0132255_1047393561	3300015374	Arabidopsis Rhizosphere	VRLFRRRSTSEPSPIKEPASAPVEVGGDRIVFWKAKSEEVEGEIYGPVWITDANDPNVTLEEHDEWLTWEQAE
Ga0190266_101826801	3300017965	Soil	MGWFRHRSAPPPPSEDEQPIVVGGDRLVFWKAKSEEVDGKIYGPVWIADANDPDVTLEEHDEWLTWEKAQEFARKRALPF
Ga0190266_103878661	3300017965	Soil	MRWFRRRGAPPPPPSQDEQPIVVGGDRLVFWKAKSEEVDGEIYGPVWIADANDPDVTLEEHDEWLTWEKAQEFARKRALPF
Ga0184624_103690662	3300018073	Groundwater Sediment	MGWFRRRSAPPPPSQDEQPIVVGGDRLVFWKAKSEEVDGEIYGPVWIADANDPAVTLEEHDEWLTWEQAQE
Ga0190268_103405962	3300018466	Soil	MRWFRRRSAPPPPSQDEEPIVVGGDRLVFWKAKSEEVDGEIYGPVWIADANDPDVTLEEHEEWVTWEQAQEFARKRALPFDEV
Ga0190270_100241772	3300018469	Soil	MMRWFRRTKPSASRPDEPEEPIEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPDVRLEEPDEWITWEQAQEFARKRELPSDEV
Ga0190270_101095302	3300018469	Soil	MRWFRRRGATPPPPGQDEQPIVVGGERLVFWKAKSEEVEGEISGPVWIADANDPDVTLEQHDEWLTWAQAQEFARKRALPFEEV
Ga0190270_116061922	3300018469	Soil	MRWFRRRSAPPPPSQDEEPIVVGGDRLVFWKAKSEEVDGEIYGPVWIADANDPDVTLEEHDEWLTWEQAQEFARKRALPFDEV
Ga0190274_116476562	3300018476	Soil	MRRRRSSGTDSRSTLPIVRWFRRTQVASSPDDTVEPIEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPNITLEETTEWVTWEQAEDFARRRELPIEDV
Ga0190274_121193981	3300018476	Soil	MRWFRRRKAPPPPSLDEQPIVVGGDRLVFWKAKSEEVDGEIYGPVWIADANDPDVTLEEHDEWLTWEQAQEFARKRALPFDEV
Ga0190271_131762032	3300018481	Soil	MRWFRRRSTPPAPSQDEEPIVVGGDRLVFWKAKSEEVDGEIYGPVWIADANDPDVTLEEQEEWVTWEQAQEFARRRALPFDEV
Ga0173482_101369382	3300019361	Soil	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEELEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV
Ga0173482_103370822	3300019361	Soil	MPWLRRRSERARSDGHVEPEESIEVGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHDEWLTWEQAEEFAQKRGLPIEDV
Ga0247788_10267212	3300022901	Soil	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV
Ga0247754_10358363	3300023102	Soil	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV
Ga0247776_100575082	3300023275	Plant Litter	MGWFRRRRATTPARDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV
Ga0207642_107072661	3300025899	Miscanthus Rhizosphere	LVSPSPRKDPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV
Ga0207688_1000275410	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV
Ga0207705_101154091	3300025909	Corn Rhizosphere	TPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV
Ga0207671_103475861	3300025914	Corn Rhizosphere	SPGHRRAPRLSLMGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEQAEEFARKRGLPIEDV
Ga0207657_1000342014	3300025919	Corn Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEHAEEFARKRGLPIEDV
Ga0207652_101382654	3300025921	Corn Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEKHDAWLTWEHAEEFARKRGLPIEDV
Ga0207709_100207343	3300025935	Miscanthus Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEQAEEFARKRGLPIEDM
Ga0207704_102950361	3300025938	Miscanthus Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEHTEEFARKRGLPIEDV
Ga0207691_100286163	3300025940	Miscanthus Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEQAEEFARKRGLPIEDV
Ga0207691_109790122	3300025940	Miscanthus Rhizosphere	WFRRTQPPSSPQDETVEPIEVGSDRIVFWKAKSEEVEGEIYGPVWIASADDPSITLEEPTEWVTWEQAEAFARRRELPIEDV
Ga0207661_100109098	3300025944	Corn Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFA
Ga0207661_100806055	3300025944	Corn Rhizosphere	MGWFRRRRATTPAPDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV
Ga0207667_112087922	3300025949	Corn Rhizosphere	MGWFRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWE
Ga0207668_114843411	3300025972	Switchgrass Rhizosphere	RRRAPRLSLMGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEHAEEFARKRGLPIEDV
Ga0207677_119621151	3300026023	Miscanthus Rhizosphere	PGHRRAPRLSLMGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLEKHDAWLTWEHAEEFARKRGLPIEDV
Ga0207678_100752396	3300026067	Corn Rhizosphere	FRRRRATTPAPDRNEHTESVDVGGDRLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV
Ga0207702_101498972	3300026078	Corn Rhizosphere	MGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHTEEFARKRGLPIEDV
Ga0207675_1003144101	3300026118	Switchgrass Rhizosphere	GRRRAPRLSLMGWFRRRRATTPARDRNEHRESVDVGGEKLVFWKGKSEEVEGEIYGPVWIADANDPNVTLDEHDAWLTWEHTEEFARKRGLPIEDV
Ga0207683_100591875	3300026121	Miscanthus Rhizosphere	MGWFRRRRATTPAPDRNEHRESVDVGGEKLVFWKAKSEEVEGEIYGPVWIADANDPNVTLEEHDAWLTWEHAEEFARKRGLPIEDV
Ga0207683_120909672	3300026121	Miscanthus Rhizosphere	VRWFRRTQPPSSPQDETVEPIEVGSDRIVFWKAKSEEVEGEIYGPVWIASADDPSITLEEPTEWVTWEQAEAFARKRELPIEDV
Ga0209854_10978252	3300027384	Groundwater Sand	MRWLSRRNTRPSSPGREEPEESFEVGSNRIVFWKAKEQVDGEDYGPVWIADAKDPDVTLEEPDLWLSWDEAEAFARKRGLPLEDV
Ga0247820_102338402	3300028597	Soil	MRWFRRRSEEASLSRDEPEESIEVGGDRIVFWKAKSEEVKGEIYGPVWIADANDPDVTLEEHDEWLSYEQAEEFAKKRGLTLEET
Ga0247824_103686261	3300028809	Soil	MRWFRRRSEEASLSRDEPEESIEVGGDRIVFWKAKSEEVKGEIYGPVWIADANDPDVTLEEHDEWLSYEQAEEFAKKRGLPLEET
Ga0247825_106960852	3300028812	Soil	MRWFRRRSEEASLSRDEPEESIEVGGDRIVFWKAKSEEVKGEIYGPVWIADANDPDVTLEEHDEWLSYEQAEEFAKKRGLP
Ga0247825_109497141	3300028812	Soil	MRWFRRERTTPASPSVDDPAEPIEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPDVTLEELHDWVTWEQAEEFAR
Ga0299907_106240292	3300030006	Soil	MVRWFSRRRKAAPSVSGSSEPEEAFEVGGDRIVFWKAKEQVDGENYGPAWIADANDPDTPLEEPDLWLSWGQAEEFARKRGLPLEDV
Ga0310892_109914851	3300031858	Soil	MRWLRRRSEQASPEQVKPEESIEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPDVTLEEHGEWLSYEQAEKFAQKRGLPLEET
Ga0310893_101631471	3300031892	Soil	SEQASPEQVKPEESIEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPDVTLEEHGEWLSYEQAEKFAQKRGLPLEET
Ga0310900_107167641	3300031908	Soil	MRWLRRRSEQASPEQVKPEESIEVGGDRIVFWKATSDEVEGEIYGPVWIADANDPDVTLEEHGEWLSYEQAEKFAQKRGLPLEET
Ga0310903_105571381	3300032000	Soil	SKVSDMRWLRRRSEQASPEQVKPEESIEVGGDRIVFWKAKSEEVEGEIYGPVWIADANDPDVTLEEHGEWLSYEQAEKFAQKRGLPLEET
Ga0310890_105813572	3300032075	Soil	MRWLRRRSEQASPEQVKPEESIEVGGDRIVFWKAKSEEVEGEIYGPLWIADANDPDVTLEEHDEWLSYEQAEEFAKKRGLTLEET
Ga0247829_101566072	3300033550	Soil	MRWFRRRSEEASLSRDEPEESIEVGGDRIVFWKAKSEEVKGEIYGPVWIADANEPDVTLEEHDEWLSYEQAEEFAKKRGLTFEET
Ga0364930_0090008_280_540	3300033814	Sediment	MSWFRRRSKRATSGGQAEAEESYEIGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHGEWLTWEQAEEFARKRGLPLEDV
Ga0364942_0090213_1_258	3300034165	Sediment	SWFRRRSKRATSGGQAEAEESYEIGGDRIVFWKAKSEMVDDEIYGPVWIADANDPNVTLEEHGEWLTWEQAEEFARKRGLPLEDV
Ga0364931_0168389_350_607	3300034176	Sediment	VRWLKRSGKQSPSPNQDEREEVVEVGGDRIVFWKTKEQVDGEDYGPVWIADANDPNVTLEETELWLTWEQAEEFARKRGLPLEDV
Ga0364943_0223636_164_421	3300034354	Sediment	VRWLKRSGKQSPSPNQDEQEEVVEVGGDRIVFWKTKEQVDGEDYGPVWIADANDPDVTLEEPELWLTWEQAEEFARKRGLPLEDV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100265

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences