Metagenome Family F100262

Basic Information
Family ID	F100262
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	65 residues
Representative Sequence	MSMTLANTLGADDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Number of Associated Samples	67
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.00 %
% of genes near scaffold ends (potentially truncated)	11.76 %
% of genes from short scaffolds (< 2000 bps)	75.49 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (62.745 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (23.529 % of family members)
Environment Ontology (ENVO)	Unclassified (23.529 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.098 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86. 1ICCgaii200_07682262 2ICChiseqgaiiDRAFT_06280194 3ICChiseqgaiiFebDRAFT_107549312 4JGI10216J12902_1016706712 5Ga0055472_101883062 6Ga0062593_1001491652 7Ga0062589_1002548632 8Ga0062590_1002588042 9Ga0063356_1004034002 10Ga0063356_1008722921 11Ga0068995_100211912 12Ga0081455_100044022 13Ga0114129_120004111 14Ga0111538_110302031 15Ga0126307_100037691 16Ga0126307_102108093 17Ga0126307_102502592 18Ga0126307_103803952 19Ga0126307_106647612 20Ga0105084_11073741 21Ga0105070_10433432 22Ga0105062_10884042 23Ga0105072_10138712 24Ga0126313_100082946 25Ga0126313_100110626 26Ga0126313_100711843 27Ga0126313_102365021 28Ga0126313_112137961 29Ga0126304_102783393 30Ga0126304_103190331 31Ga0126304_106231601 32Ga0126315_100040816 33Ga0126315_103955262 34Ga0126308_100070212 35Ga0126308_101053942 36Ga0126312_109471422 37Ga0126314_100739682 38Ga0126314_101529002 39Ga0126310_100097832 40Ga0126311_107084191 41Ga0126306_100239186 42Ga0126306_102132902 43Ga0120192_100329562 44Ga0120192_101130482 45Ga0137374_101576452 46Ga0137374_106821412 47Ga0137372_101406091 48Ga0137367_100076246 49Ga0137368_100721902 50Ga0137368_106758891 51Ga0137373_105925262 52Ga0075309_10849141 53Ga0120193_100665212 54Ga0132258_119045472 55Ga0132258_125920522 56Ga0184638_11979261 57Ga0184616_101363502 58Ga0184637_101980172 59Ga0184611_11001041 60Ga0184635_100338842 61Ga0184624_100672492 62Ga0190265_110875612 63Ga0190270_100023371 64Ga0190270_100104686 65Ga0190270_101781502 66Ga0190270_103782541 67Ga0190270_106394892 68Ga0190270_107479461 69Ga0190270_122960801 70Ga0190270_128892851 71Ga0190271_110494391 72Ga0190271_112508622 73Ga0193741_100120110 74Ga0210378_100035836 75Ga0210378_100395852 76Ga0210378_100719472 77Ga0247786_11373212 78Ga0209896_10331582 79Ga0209879_10192772 80Ga0209842_10964571 81Ga0209899_10202201 82Ga0307318_103757871 83Ga0307320_103849952 84Ga0307286_103570731 85Ga0307278_1000072818 86Ga0307278_100018662 87Ga0307278_100105233 88Ga0307304_105808571 89Ga0299907_100887093 90Ga0247826_114203641 91Ga0299914_100041063 92Ga0299914_107516771 93Ga0299914_110505541 94Ga0307405_110525012 95Ga0307406_101127171 96Ga0307412_110215001 97Ga0307409_1020666922 98Ga0307409_1025610572 99Ga0307416_1000042202 100Ga0307415_1009692281 101Ga0307415_1010514142 102Ga0364931_0147128_60_260
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86. 1ICCgaii200_07682262 2Ga0055472_101883062 3Ga0063356_1008722921 4Ga0114129_120004111 5Ga0126307_102108093 6Ga0126307_103803952 7Ga0126304_103190331 8Ga0307409_1020666922
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1Ga0307416_1000042202 2ICChiseqgaiiFebDRAFT_107549312 3JGI10216J12902_1016706712 4Ga0055472_101883062 5Ga0063356_1004034002 6Ga0126307_103803952 7Ga0105084_11073741 8Ga0126313_100711843 9Ga0126313_112137961 10Ga0126315_103955262 11Ga0126314_100739682 12Ga0126311_107084191 13Ga0126306_100239186 14Ga0120192_100329562 15Ga0137374_106821412 16Ga0075309_10849141 17Ga0184635_100338842 18Ga0190270_106394892 19Ga0210378_100719472 20Ga0307304_105808571 21Ga0299907_100887093 22Ga0299914_110505541 23Ga0307405_110525012
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.38% β-sheet: 0.00% Coil/Unstructured: 43.62%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02826	2-Hacid_dh_C	3.92
PF00583	Acetyltransf_1	3.92
PF01872	RibD_C	2.94
PF13191	AAA_16	1.96
PF00106	adh_short	1.96
PF00211	Guanylate_cyc	1.96
PF08327	AHSA1	0.98
PF00561	Abhydrolase_1	0.98
PF08031	BBE	0.98
PF08534	Redoxin	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.94
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.94
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.96
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.96
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.98
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.98
COG3227	Zn-dependent metalloprotease (Neutral protease B)	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	0.98
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.98
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.57 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	20.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.96 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.96 %
Unclassified	root	N/A	37.25 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.98 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.96 %
Unclassified	root	N/A	37.25 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.98 %
Unclassified	root	N/A	37.25 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.98 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.98 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.98 %
Unclassified	root	N/A	37.25 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0768226	Not Available	837	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0628019	Not Available	940	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10754931	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300000956\|JGI10216J12902_101670671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1424	Open in IMG/M
3300003998\|Ga0055472_10188306	Not Available	630	Open in IMG/M
3300004114\|Ga0062593_100149165	All Organisms → cellular organisms → Bacteria	1770	Open in IMG/M
3300004156\|Ga0062589_100254863	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300004157\|Ga0062590_100258804	Not Available	1318	Open in IMG/M
3300004463\|Ga0063356_100403400	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300004463\|Ga0063356_100872292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1267	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.29%
Host-Associated	Host-Associated	14.71%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	10.78%
Plants	Host-Associated → Plants	14.71%
Terrestrial	Environmental → Terrestrial	74.51%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.98%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Marine	Environmental → Aquatic → Marine	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Sediment	Environmental → Aquatic → Sediment	5.88%
Soil	Environmental → Terrestrial → Soil	73.53%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Sand	Environmental → Terrestrial → Soil → Sand	7.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.80%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	2.94%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.96%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.84%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.84%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	23.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	19.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07682262	2228664021	Soil	MSMTLANTLGANDGLEADWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWVDLEHEIAGTIAAW
ICChiseqgaiiDRAFT_06280194	3300000033	Soil	MSMTLANTLGANDGLEADWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWVDLEHEIAGTIAAW*
ICChiseqgaiiFebDRAFT_107549312	3300000363	Soil	MSMTLADTIGTGNGLEAEWVTWIGTLESWERNLVLRHELEWHDLLSSGEWTWADLELAIAERVASW*
JGI10216J12902_1016706712	3300000956	Soil	MSMTLANPLVANDGLEAKWVTWIGTLESWERNLVLRHELEWHDLISSGEWTWADLEHELGETIAAW*
Ga0055472_101883062	3300003998	Natural And Restored Wetlands	MSVSVADTLRADDRLEAEWVTWIRILESWERNLVLRHELEWHDLFSSGTWTWADLEY
Ga0062593_1001491652	3300004114	Soil	MTLANTLGAKVGLEAEWVTWIGTLESWERNLVLRHELEWHDRFSSGEWTWADLERELAETIAAW*
Ga0062589_1002548632	3300004156	Soil	MTLANTLGAEVGLEAEWVTWIGTLESWERNLVLRHELEWHDRFSSGEWTWADLERELAETIAAW*
Ga0062590_1002588042	3300004157	Soil	MSMTLAKTLAVSDRLEAEWVTWIGTLESWERNLVFRHELEWHDLFSSGEWTWADLERELAETIAAW*
Ga0063356_1004034002	3300004463	Arabidopsis Thaliana Rhizosphere	VSTVSTTLAHTLGAHDGLEAEWVTWIGTLQSWERNVVLRHELEWHDLLSSGEWTWADLEQELADTIVAW*
Ga0063356_1008722921	3300004463	Arabidopsis Thaliana Rhizosphere	FRQTTYRERKTEVSTVSMTLANTLGAEVGLEAEWVTWIGTLESWERNLVLRHELEWHDRFSSGEWTWADLERELAETIAAW*
Ga0068995_100211912	3300005206	Natural And Restored Wetlands	MSMTLANIVGANDGLEAEWVTWIGALESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0081455_100044022	3300005937	Tabebuia Heterophylla Rhizosphere	MSTTVGDTLGADDGLEAVWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0114129_120004111	3300009147	Populus Rhizosphere	LPNPTGTSNGLEAEWVTWIGTLESWERNLVLRHELEWHDLLSSGEWTWADLELALAERVASW*
Ga0111538_110302031	3300009156	Populus Rhizosphere	MSMTLADTIGTSNGLEAEWVTWIGTLESWERNLVLRHELEWHDLLSSGEWTWADLELALA
Ga0126307_100037691	3300009789	Serpentine Soil	MSMTLTHTLGAHDRLEALWVRWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0126307_102108093	3300009789	Serpentine Soil	MSMTLAHTLGANDRLEAVWVTWIGTLASWERNLVLRHELEWHDLFSSGEWTWA
Ga0126307_102502592	3300009789	Serpentine Soil	MSMTLANTLGANDGLEAVWVSWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAGTIAAW*
Ga0126307_103803952	3300009789	Serpentine Soil	MPKKLNTEVSTMSMTLAKTPAVNDRLEAEWVTWIGTLESWERHLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0126307_106647612	3300009789	Serpentine Soil	MSMTLAHTLGANDRLEAVWVRWIGTLESWERNLVLRHELEWHDLFSSGEWTWADIEHEIAETIAAW*
Ga0105084_11073741	3300009811	Groundwater Sand	MSTTLADTLGAGDGLEAAWVTWIGTLKSWERNLVLAHELEWHDLLSSHEWTWADLEHEIAETIAAW*
Ga0105070_10433432	3300009815	Groundwater Sand	MSMTLANTLRAGAGLEAAWVTWIGTLASWERNLVLRHELEWHDLFSSGKWTWADLEHEIAETIAAW*
Ga0105062_10884042	3300009817	Groundwater Sand	MSMTLANTLGANDGLEAEWVTWIGTLQSWERNLVLAHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0105072_10138712	3300009818	Groundwater Sand	MSMTLANTLRAGDGLEAAWVTWIGTLASWERNLVLRHELEWHDLFSSGKWTWADLEHEIAETIAAW*
Ga0126313_100082946	3300009840	Serpentine Soil	MSMTLANTLGANDGLEAVWITWIGTLASWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0126313_100110626	3300009840	Serpentine Soil	MTRTLAHTLGANDRLEAIWVRWIAALESWERNVVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0126313_100711843	3300009840	Serpentine Soil	MSMTLAHTLGANNRLEAVWVTWIGTLASWERNLVLRHELEWHDLFSSGEWTWADLEHEIAQTIAAW*
Ga0126313_102365021	3300009840	Serpentine Soil	MSMTLASTLGAKDRLEAEWVIWIGTLESWERNLVLRHELEWHDLVSSREWTWADLKHEIAEIIAAW*
Ga0126313_112137961	3300009840	Serpentine Soil	MSMTLTHSLGAHDRLEALWVRWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0126304_102783393	3300010037	Serpentine Soil	EVSTMSMTLAKTPAVNDRLEAEWVTWIGTLESWERHLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0126304_103190331	3300010037	Serpentine Soil	TRRAGDRLEAMWVTLIGTLESWERNLVFAHELEWHDLFSSGEWTWADLEHELAQTMAAW*
Ga0126304_106231601	3300010037	Serpentine Soil	MNMTLADTLGADDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEVAQTIAAW*
Ga0126315_100040816	3300010038	Serpentine Soil	MSMTLAHTLGANDRLEAVWVTWIGTLASWERNLVLRHELEWHDLFSSGEWTWADLEHEIAQTIAAW*
Ga0126315_103955262	3300010038	Serpentine Soil	MSMTLAHTLGANDRLEAVWVRWIGTLESWERNVVLRHELEWHDLFSSGEWTLSDIEHEIAETIAAW*
Ga0126308_100070212	3300010040	Serpentine Soil	MSMTLAHTLGANDRLEAVWVRWIGALESWERNVVLRHELEWHDLFSSGEWTWADIEHELAETIAAW*
Ga0126308_101053942	3300010040	Serpentine Soil	MSMTLANTLRANDGLEAQWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHELAETIAAW*
Ga0126312_109471422	3300010041	Serpentine Soil	MSMTLANTLGANDGLEAQWVTWIGTLESWERNLVLRHELEWHDLFGSGEWTWADLEHEIAETIAAW*
Ga0126314_100739682	3300010042	Serpentine Soil	MTMTLVHTLGANDRLEAIWVRWMATLESWERNVVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0126314_101529002	3300010042	Serpentine Soil	MSMTLTHTLGAHDRLEALWVRWIGTLESWERNLVLRHELEWHDLFSSGEWSWADLEHEIAETIAAW*
Ga0126310_100097832	3300010044	Serpentine Soil	MSVTLPNTLGANDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHELAETIAAW*
Ga0126311_107084191	3300010045	Serpentine Soil	MSMTLASTLGAKDGLEAEWVIWIGTLESWERNLVLRHELEWHDLVSSREWTWADLKHEIAEIIAAW*
Ga0126306_100239186	3300010166	Serpentine Soil	MTMNLAETRRAGDRLEAMWVTLIGTLESWERNLVFAHELEWHDLFSSGEWTWADLEHELAQTMAAW*
Ga0126306_102132902	3300010166	Serpentine Soil	MSMTLANTLGENDGLEAVWVTWIGTLASWERNLVLRHELEWHDLFSSGEWTWDDLEHEIAETIAAW*
Ga0120192_100329562	3300012021	Terrestrial	MSMTLADILGANDGLEAAWVAWIGSLESWERNLVLAHELEWHDLFISGQRTWADLEQEIAETIAAW*
Ga0120192_101130482	3300012021	Terrestrial	MSMTLAHTLGANDGLEAVWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIADTIAAW*
Ga0137374_101576452	3300012204	Vadose Zone Soil	MSMTLANTLTAEDGSEAAWVTWIGTLESWERSLVLRHELEWHDLFSSGEWTWADLEQEIAETIAAW*
Ga0137374_106821412	3300012204	Vadose Zone Soil	MSMTLANTLRAEDGLEAAWVTWIGTLESCERNLVLRHELEWHELFSSGDWTWADLEHEIAETVAAW*
Ga0137372_101406091	3300012350	Vadose Zone Soil	MSTMSTTLASTLGANDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0137367_100076246	3300012353	Vadose Zone Soil	MSMTLANTLTAEDGSEAAWVTWIGTLESWERSLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0137368_100721902	3300012358	Vadose Zone Soil	MSMTLANTLGATDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0137368_106758891	3300012358	Vadose Zone Soil	MREKEVNTMSMTLANTLGANDVLEAEWVTWIGTLECWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0137373_105925262	3300012532	Vadose Zone Soil	MSMTLANTLGANGGLEAEWVTWIGTLECWERNLVLRHELEWHDLFSSGEWTWADLEHDIAETIAAW*
Ga0075309_10849141	3300014268	Natural And Restored Wetlands	MSSSCADTLGADERLEAKWVTWIGTLESWERNLVLAHELEWHDRFSSGEWTWADL
Ga0120193_100665212	3300014965	Terrestrial	MSMTLAHTLGGNDCLEAVWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW*
Ga0132258_119045472	3300015371	Arabidopsis Rhizosphere	MTLANTLGTKVGLEAEWVTWIGTLESWERNLVLRHELEWHDRFSSGEWTWADVEHELAETIAAW*
Ga0132258_125920522	3300015371	Arabidopsis Rhizosphere	MSTTLANTTGTSNGLEAEWVTWIGTLESWERNLVLRHELEWHDLLSSGEWTWADLELAIAERVASW*
Ga0184638_11979261	3300018052	Groundwater Sediment	MSVTLAHTLGAKDRLEALWVGWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0184616_101363502	3300018055	Groundwater Sediment	MSMTLANTLRATDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWAWADLEHEMAEIIAAW
Ga0184637_101980172	3300018063	Groundwater Sediment	MSMTLANTLGANDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAEIVGAW
Ga0184611_11001041	3300018067	Groundwater Sediment	MSMTLAHTLGANDGLEAVWGTWIGTLESWERNLVLAHELEWHDLFSSGEWTWADLKHEIAETIAAW
Ga0184635_100338842	3300018072	Groundwater Sediment	MSMTFAHTLGANDGLEAVWVTWIGTLESWDRNLVLAHELEWHDLFSSGEWTWADLKHERAETIAAW
Ga0184624_100672492	3300018073	Groundwater Sediment	MSMTLAHTLGANDGLEAVWVTWIGTLESWDRNLVLAHELEWHDLFSSGEWTWADLKHEIAETIAAW
Ga0190265_110875612	3300018422	Soil	MSMTLAHTLGADDRSEAAWVTWIGTLESWERNLVFRHELEWHDLFSSGEWSWADLEHEIAETIAAW
Ga0190270_100023371	3300018469	Soil	MSMTLAHTLGASDRLEAVWVRWIGTLESWERNVVLRHELEWHDLFSSGEWTWGDLEHEIAETIAAW
Ga0190270_100104686	3300018469	Soil	MSVSLADTLRAVDRLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0190270_101781502	3300018469	Soil	MSMTLANILGANDGLEAEWITWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAEIVAAW
Ga0190270_103782541	3300018469	Soil	MSMTLADTLGAEDGLEAVWVTWIGTLESWERNLVLAHELEWHDLFSSGEWTWADVEHEIAETIAAW
Ga0190270_106394892	3300018469	Soil	MSMALVHSLGADLEAQWVTWIGTLESWERNVVLRHELEWHDLFSSGEWTWADLEHELAQTVAAW
Ga0190270_107479461	3300018469	Soil	MSMTLANPLVANDGLEAKWVTWIGTLESWARNLVLRHELEWHDLINSGEWTWADLEHEIAETIAA
Ga0190270_122960801	3300018469	Soil	MSMTLTHTLGAHDRLEALWVRWIGTLESWERNLVLRHELEWHDLFSSGKWTWADLEHEIAETIAAW
Ga0190270_128892851	3300018469	Soil	MSMTLANTLRTEDGLEAAWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0190271_110494391	3300018481	Soil	MSMTLANTLEATDGLEAEWVTWIGTLESWERNLVLAHELEWHDLFSSGEWTWADLEQEIAETIAAWQTR
Ga0190271_112508622	3300018481	Soil	MSMTLAKTPAVYDRLEAEWVTWIGTLESWERNLVFRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0193741_100120110	3300019884	Soil	MSVTLAHTLGAKDCLEALWVGWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0210378_100035836	3300021073	Groundwater Sediment	MSIALANTLGANDDLEAEWVAWIGTLESWERNLVLRHELEWHDLFSSGDWTWADLEHEIAETIAAW
Ga0210378_100395852	3300021073	Groundwater Sediment	MSMTLANTLGANDGLEAEWVIWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEREIAETIAAW
Ga0210378_100719472	3300021073	Groundwater Sediment	MSVSLTDTLGANDGLEAVWVTWIGTLESWERHLVLAHELEWHDLFSSGEWTWADLKHEIAETIAAW
Ga0247786_11373212	3300022883	Soil	MSMTLAKTLAVSDRLEAEWVTWIGTLESWERNLVFRHELEWHDLFSSGEWTWADLERELAETIAAW
Ga0209896_10331582	3300027006	Groundwater Sand	MSTTLADTLGAGDGLEAAWVTWIGTLKSWERNLVLAHELEWHDLFSSGEWTWADLEQEIAETIAAW
Ga0209879_10192772	3300027056	Groundwater Sand	MSTTLADTLGAGDGLEAAWVTWIGTLKSWERNLVLAHELEWHDLLSSHEWTWADLEHEIAETIAAW
Ga0209842_10964571	3300027379	Groundwater Sand	MSMTLANTLGANDGLEAEWVTWIGTLQSWERNLVLAHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0209899_10202201	3300027490	Groundwater Sand	MSMTLANTLRAGDGLEAAWVTWIGTLASWERNLVLRHELEWHDLFSSGKWTWADLEHEIAETIAAW
Ga0307318_103757871	3300028744	Soil	MSLTLAKTLAVNDRLEAEWVTWIGALESWERNLVLRHELEWHDLFSSGEWTWADLKHEIAETIAAW
Ga0307320_103849952	3300028771	Soil	MTMTLANIVGANDGLEAEWVTWIGTLESWERNVVLRHELEWHDLFSSGEWTWVDLEHEIAETIAAW
Ga0307286_103570731	3300028876	Soil	MSLTLAKTLAVNDRLEAEWVTWIGALESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0307278_1000072818	3300028878	Soil	MSMTLANTLRAEDGLEAAWVTWIGTLKSWERNLVLRHELEWHDLFNSGEWTWADLEHEIAETIAAW
Ga0307278_100018662	3300028878	Soil	MSMTLAHTLGARDRVEALWVAWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETVAAW
Ga0307278_100105233	3300028878	Soil	MSMTLANTLTAEDGSEAAWVTWIGTLESWERSLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0307304_105808571	3300028885	Soil	MSMTLAHTLGANDHLEAVWVTWIGTLESWERTLVLRDELEWHDLFSSGEWRWADLEHEIAEIIAAW
Ga0299907_100887093	3300030006	Soil	MSMTLADTLRADNGLEAEWVTWIGSLESWERTLVLRHELEWHDLLSSGEWTWADLEHEIAETVAAW
Ga0247826_114203641	3300030336	Soil	MSMTLANPLVANDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0299914_100041063	3300031228	Soil	MTMTVATTLGADDGLEAVWVTWIGTLESWERNLVLAHELEWHDLFSSGEWTWADLEHQIAETIAAWWTIEV
Ga0299914_107516771	3300031228	Soil	MSMTRANTLGANDGLEAESVNWIGTLEAWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAR
Ga0299914_110505541	3300031228	Soil	MTMTVATTLGADESLEAAWVTWIGSLESWERNLVLAHELEWHDLFSSGEWTWADLEHEIAQTIAAW
Ga0307405_110525012	3300031731	Rhizosphere	LPLNDRLEAQWVTWIGTLKSWERNLVFRHELEWHDRFSSGEWTWADLERELAETIAGW
Ga0307406_101127171	3300031901	Rhizosphere	MSMTLTNTLGADDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLDHEIAETIAAC
Ga0307412_110215001	3300031911	Rhizosphere	MSMTLANTLGADDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLDHEIAETIAAC
Ga0307409_1020666922	3300031995	Rhizosphere	DDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLDHEIAETIAAC
Ga0307409_1025610572	3300031995	Rhizosphere	LGANDRLEAIWVRWIATLESWERNVVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0307416_1000042202	3300032002	Rhizosphere	MSMTLANTLGADDGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLEHEIAETIAAW
Ga0307415_1009692281	3300032126	Rhizosphere	DGLEAEWVTWIGTLESWERNLVLRHELEWHDLFSSGEWTWADLDHEIAETIAAC
Ga0307415_1010514142	3300032126	Rhizosphere	MIMTLAHTLGANDRLEAIWVRWIATLESWERNVVLRHELEWHDLFSSGEWTWADLEHEIA
Ga0364931_0147128_60_260	3300034176	Sediment	MSMTLADTLRAEDGLEAVWVTWIGTLESWERNVVLAHELEWHDLFSSGEWTWADLEHEIAETIAAW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100262

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences