Metagenome / Metatranscriptome Family F100197

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100197
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	74 residues
Representative Sequence	MEFRCPYCNAPIYSRKNKICGVCEKPLPKEFLMNDAEIAFWKQEMDKEEKEAKEFGQQIKDVGPHDGHGGIGGMI
Number of Associated Samples	84
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	20.59 %
% of genes near scaffold ends (potentially truncated)	19.61 %
% of genes from short scaffolds (< 2000 bps)	68.63 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (64.706 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (12.745 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.216 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.21% β-sheet: 5.83% Coil/Unstructured: 67.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02075	RuvC	39.22
PF14520	HHH_5	24.51
PF01330	RuvA_N	15.69
PF04028	DUF374	7.84
PF00271	Helicase_C	2.94
PF02591	zf-RING_7	0.98
PF00202	Aminotran_3	0.98
PF05635	23S_rRNA_IVP	0.98
PF11638	DnaA_N	0.98
PF03061	4HBT	0.98
PF08029	HisG_C	0.98
PF10672	Methyltrans_SAM	0.98
PF00892	EamA	0.98
PF02441	Flavoprotein	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	Replication, recombination and repair [L]	39.22
COG0632	Holliday junction resolvasome RuvABC DNA-binding subunit	Replication, recombination and repair [L]	15.69
COG2121	Uncharacterized conserved protein, lysophospholipid acyltransferase (LPLAT) superfamily	Function unknown [S]	7.84
COG0040	ATP phosphoribosyltransferase	Amino acid transport and metabolism [E]	0.98
COG1579	Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.71 %
Unclassified	root	N/A	35.29 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.71 %
Unclassified	root	N/A	35.29 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.71 %
Unclassified	root	N/A	35.29 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	60.78 %
Unclassified	root	N/A	35.29 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	60.78 %
Unclassified	root	N/A	35.29 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	55.88 %
Unclassified	root	N/A	35.29 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	55.88 %
Unclassified	root	N/A	35.29 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	42.16 %
Unclassified	root	N/A	35.29 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	41.18 %
Unclassified	root	N/A	35.29 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	0.98 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	41.18 %
Unclassified	root	N/A	35.29 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.98 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	41.18 %
Unclassified	root	N/A	35.29 %
Verrucomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp.	0.98 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.98 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000176\|TB03JUN2009E_c035550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	670	Open in IMG/M
3300001213\|JGIcombinedJ13530_100673598	Not Available	571	Open in IMG/M
3300003432\|JGI20214J51088_10363804	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300004082\|Ga0062384_100997351	Not Available	599	Open in IMG/M
3300005341\|Ga0070691_10235632	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300005831\|Ga0074471_11024586	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2602	Open in IMG/M
3300005994\|Ga0066789_10099971	Not Available	1246	Open in IMG/M
3300009549\|Ga0116137_1130729	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300009651\|Ga0105859_1157672	Not Available	645	Open in IMG/M
3300009660\|Ga0105854_1193476	Not Available	673	Open in IMG/M
3300010343\|Ga0074044_10207093	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp.	1302	Open in IMG/M
3300012690\|Ga0157575_101122	Not Available	1057	Open in IMG/M
3300012693\|Ga0157573_1069621	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	981	Open in IMG/M
3300012699\|Ga0157593_1079326	Not Available	802	Open in IMG/M
3300012701\|Ga0157562_1173360	Not Available	625	Open in IMG/M
3300012943\|Ga0164241_10005164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	12326	Open in IMG/M
3300013068\|Ga0157563_1036747	Not Available	633	Open in IMG/M
3300014152\|Ga0181533_1091184	Not Available	1387	Open in IMG/M
3300014160\|Ga0181517_10047859	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2652	Open in IMG/M
3300014160\|Ga0181517_10216177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1040	Open in IMG/M
3300014168\|Ga0181534_10000754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	22480	Open in IMG/M
3300014168\|Ga0181534_10003224	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	9737	Open in IMG/M
3300014169\|Ga0181531_10170978	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1316	Open in IMG/M
3300014169\|Ga0181531_10761763	Not Available	603	Open in IMG/M
3300014199\|Ga0181535_10353500	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	867	Open in IMG/M
3300014201\|Ga0181537_10035038	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	3446	Open in IMG/M
3300014201\|Ga0181537_10107472	Not Available	1902	Open in IMG/M
3300014325\|Ga0163163_11398151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	761	Open in IMG/M
3300014489\|Ga0182018_10053996	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2448	Open in IMG/M
3300014489\|Ga0182018_10497271	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	645	Open in IMG/M
3300014490\|Ga0182010_10188185	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1078	Open in IMG/M
3300014494\|Ga0182017_10123008	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1690	Open in IMG/M
3300014494\|Ga0182017_10465968	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	777	Open in IMG/M
3300014496\|Ga0182011_10220561	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1283	Open in IMG/M
3300014496\|Ga0182011_10807879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	587	Open in IMG/M
3300014498\|Ga0182019_10768391	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	687	Open in IMG/M
3300014501\|Ga0182024_10002251	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	48354	Open in IMG/M
3300014638\|Ga0181536_10037880	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	3401	Open in IMG/M
3300014838\|Ga0182030_10000723	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	64364	Open in IMG/M
3300014838\|Ga0182030_10010318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	19001	Open in IMG/M
3300014839\|Ga0182027_10430813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1457	Open in IMG/M
3300014839\|Ga0182027_11841344	Not Available	584	Open in IMG/M
3300017941\|Ga0187850_10454181	Not Available	556	Open in IMG/M
3300017959\|Ga0187779_11083802	Not Available	559	Open in IMG/M
3300018005\|Ga0187878_1350750	Not Available	521	Open in IMG/M
3300018023\|Ga0187889_10287363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	731	Open in IMG/M
3300018090\|Ga0187770_10630305	Not Available	853	Open in IMG/M
3300019785\|Ga0182022_1126718	Not Available	537	Open in IMG/M
3300019788\|Ga0182028_1510312	Not Available	1832	Open in IMG/M
3300020695\|Ga0214190_1000214	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	16618	Open in IMG/M
3300020718\|Ga0214178_1044548	Not Available	541	Open in IMG/M
3300020728\|Ga0214202_1034308	Not Available	714	Open in IMG/M
3300021180\|Ga0210396_10711866	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	867	Open in IMG/M
3300021181\|Ga0210388_10001705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	17281	Open in IMG/M
3300021181\|Ga0210388_10344055	Not Available	1311	Open in IMG/M
3300021402\|Ga0210385_10406748	Not Available	1023	Open in IMG/M
3300021403\|Ga0210397_10302534	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1175	Open in IMG/M
3300021404\|Ga0210389_10376203	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1116	Open in IMG/M
3300021433\|Ga0210391_10976548	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	660	Open in IMG/M
3300021475\|Ga0210392_10646467	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	786	Open in IMG/M
3300022524\|Ga0224534_1000936	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	16583	Open in IMG/M
3300022526\|Ga0224533_1003112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3022	Open in IMG/M
3300023090\|Ga0224558_1104542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	983	Open in IMG/M
3300025420\|Ga0208111_1069093	Not Available	541	Open in IMG/M
3300028556\|Ga0265337_1000102	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	42139	Open in IMG/M
3300028558\|Ga0265326_10197141	Not Available	578	Open in IMG/M
3300028651\|Ga0302171_10159472	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	554	Open in IMG/M
3300028653\|Ga0265323_10016196	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2915	Open in IMG/M
3300028653\|Ga0265323_10081266	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1094	Open in IMG/M
3300028745\|Ga0302267_10099376	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1432	Open in IMG/M
3300028798\|Ga0302222_10401787	Not Available	535	Open in IMG/M
3300028800\|Ga0265338_10000242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	101378	Open in IMG/M
3300028800\|Ga0265338_10004144	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	19817	Open in IMG/M
3300028873\|Ga0302197_10074771	Not Available	1776	Open in IMG/M
3300029882\|Ga0311368_10415703	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	986	Open in IMG/M
3300029908\|Ga0311341_10366727	Not Available	841	Open in IMG/M
3300029910\|Ga0311369_10056060	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	4251	Open in IMG/M
3300031057\|Ga0170834_110919836	Not Available	505	Open in IMG/M
3300031231\|Ga0170824_108223061	Not Available	1160	Open in IMG/M
3300031236\|Ga0302324_100259275	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2704	Open in IMG/M
3300031524\|Ga0302320_10754033	Not Available	1090	Open in IMG/M
3300031525\|Ga0302326_10120952	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	4605	Open in IMG/M
3300031788\|Ga0302319_10353948	Not Available	1674	Open in IMG/M
3300031813\|Ga0316217_10000013	All Organisms → cellular organisms → Bacteria	264380	Open in IMG/M
3300032770\|Ga0335085_10000317	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	143245	Open in IMG/M
3300032770\|Ga0335085_10188924	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2535	Open in IMG/M
3300032783\|Ga0335079_10006315	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	13557	Open in IMG/M
3300032783\|Ga0335079_10137312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2750	Open in IMG/M
3300032805\|Ga0335078_10286564	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	2223	Open in IMG/M
3300032829\|Ga0335070_10286738	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1600	Open in IMG/M
3300032893\|Ga0335069_10106382	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	3536	Open in IMG/M
3300032893\|Ga0335069_12533469	Not Available	530	Open in IMG/M
3300032897\|Ga0335071_10208729	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1907	Open in IMG/M
3300032897\|Ga0335071_10276791	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1632	Open in IMG/M
3300032898\|Ga0335072_11390781	Not Available	607	Open in IMG/M
3300032898\|Ga0335072_11593442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	551	Open in IMG/M
3300032954\|Ga0335083_10743583	Not Available	792	Open in IMG/M
3300033402\|Ga0326728_10000410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	168072	Open in IMG/M
3300033475\|Ga0310811_10133079	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	3162	Open in IMG/M
3300034195\|Ga0370501_0144753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	821	Open in IMG/M
3300034282\|Ga0370492_0011920	Not Available	3551	Open in IMG/M
3300034282\|Ga0370492_0065363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1491	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.14%
Host-Associated	Host-Associated	6.86%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.73%
Aquatic	Environmental → Aquatic	29.41%
Plants	Host-Associated → Plants	6.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.02%
Freshwater	Environmental → Aquatic → Freshwater	26.47%
Peat	Environmental → Terrestrial → Peat	14.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.88%
Marine	Environmental → Aquatic → Marine	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	36.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	15.69%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	14.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.76%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Lake	Environmental → Aquatic → Freshwater → Lake	4.90%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Loam	Environmental → Terrestrial → Soil → Loam	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	18.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	17.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	14.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.90%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	3.92%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	1.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.98%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	10.78%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	5.88%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.90%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.90%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	3.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.94%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	2.94%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.96%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.96%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.96%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005831	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.43_YBM	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009651	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063	Environmental	Open in IMG/M
3300009660	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-058	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300012690	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES078 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012693	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES075 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012699	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES110 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012701	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES061 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300013068	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES062 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019785	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020695	Freshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion	Environmental	Open in IMG/M
3300020718	Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion	Environmental	Open in IMG/M
3300020728	Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022526	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300025420	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Aug08 (SPAdes)	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028558	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG	Host-Associated	Open in IMG/M
3300028651	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_2	Environmental	Open in IMG/M
3300028653	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG	Host-Associated	Open in IMG/M
3300028745	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009E_0355502	3300000176	Freshwater	MEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDGHGGVGGMAGF*
JGIcombinedJ13530_1006735982	3300001213	Wetland	MEFRCPYCNAPIYSRKNKICGVCEKPLPAELLLSGEQVAALKKQSDLEEKEAKEFGQQLKDVGPHDGHGGIGITGI*
JGI20214J51088_103638042	3300003432	Wetland	MEFRCPHCQSPIYSRKNRICGVCEKPLPEELLLSDEQVAALKKQEDQMEKQAKEFKQQLHDIADHSQGGI*
Ga0062384_1009973511	3300004082	Bog Forest Soil	IYSRKNKICGVCEKPLPKEFWMNDAEIAFWKQEMDKEEKQAKEFDQQIKDVGPHDGHGGIGGII*
Ga0070691_102356322	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MEFHCPYCNAPIYSRKNKICGVCEKPLPSELLFSEEQAAALKKQSDLEEKEAKEFGQQLKDVGPHDGHGGFGITGI*
Ga0074471_110245862	3300005831	Sediment (Intertidal)	MEYRRPHCQSPIYSRKNKICGVCEQPLPPELLFSAEQIKSLKEEMENEERRGKEFKRQISDLGPHDHGGSIGGIAGF*
Ga0066789_100999712	3300005994	Soil	MEFRCPNCHAPIYSRKTKICGVCEKPLPKELLLSDEQTAFLKKQSDQEEKQAKEFNQQIHDVGDHSQGCI*
Ga0116137_11307292	3300009549	Peatland	MEFRCPFCHSPIYSRKNKICGVCEKPLPKELLLSDEQIAALKKEMDAEEKRAKEFEQQMDDVGPHEGSGGIGGIGKI*
Ga0105859_11576722	3300009651	Permafrost Soil	MEFRCPNCQSPIYSRKNKICGVCEKPLPKELLMNDAEIAFWKKEMDKEEKEAKQFGQQLKDLGPHEGGSGLHI*
Ga0105854_11934762	3300009660	Permafrost Soil	MEFRCPYCQAPIYSRKNKICGVCEKPLPKELLMNDAEIAFWKKEMDKEEKEAKQFGQQLKNLGPREGGGGLHI*
Ga0074044_102070931	3300010343	Bog Forest Soil	NRFEPTEFRCPFCHSPIYSRKNKICGVCEKPLPAELLLSDEQVATLKKQDDEMEKRAKEFKQQLHDLGDHDHGGI*
Ga0157575_1011223	3300012690	Freshwater	FERAEENLEMEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDGHGGVGGMAGF*
Ga0157573_10696212	3300012693	Freshwater	MEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAENAFWKKQMDKEEKEAKDFGRQINDIGSHDGHGGVGGMAGI*
Ga0157593_10793262	3300012699	Freshwater	MEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDGH
Ga0157562_11733602	3300012701	Freshwater	MEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDGHGG
Ga0164241_1000516412	3300012943	Soil	MEYRCPYCNAPIYSRKNRICGVCEKPLPAELLLSDEQIAALKKQSDLEEKEAKDFRQQMNDLGPHEEPGGMGGII*
Ga0157563_10367471	3300013068	Freshwater	AARFERAEENLEMEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKVAKDFGRQINDIGSHDGHGGVGGMAGF*
Ga0181533_10911842	3300014152	Bog	MEFRCPYCHSPIYSRKNKICGVCEKPLPKELLLSDEQIAALKKEMDAEEKRAKEFEQQMDDVGPHEGSGGIGGIGKI*
Ga0181517_100478594	3300014160	Bog	MEFRCPNCNAPIYSRKQKICGVCEKPLPKELLMNDAEIAFWKREMDKEEKEAKEFGQQLKDIGEHDHGGGMGGII*
Ga0181517_102161772	3300014160	Bog	MEFRCPYCNAPIYSRKNKICGVCEKPLPKELLMSDEQIAFWKSEMDQEEKRTKEFKQQLDDVVPHEGPSGAGMII*
Ga0181534_100007546	3300014168	Bog	MEFRCPYCNAPIYSRKNKVCGVCEKPLPKELLMSDAEIAFWKKEMDQEEKRAKEFDQQMNDVGPHDGRGGIGGIAGF*
Ga0181534_100032244	3300014168	Bog	MEFRCPYCQAPIYSRKNKICGVCEKPLPKKLLMSDAEIAFWKKEMDQEEKRAKEFDRQMKDVGPHDGHGGIGGIAGF*
Ga0181531_101709782	3300014169	Bog	MEFRCPYCQAPIYSRKNKICGVCEKPLPKELLMSDEQIALWKSEMNQEEKRTEEFKQQIDDVGPHDGHGGAFRI*
Ga0181531_107617631	3300014169	Bog	MEFRCPNCNAPIYSRKLKICGECEGPLPKELLMNDAEIAFWKKEMDKEEKESKDFGRQIKDVGPHDSF
Ga0181535_103535002	3300014199	Bog	MEFRCPYCNAPIYSRKNKVCGVCEKPLPKELLMSDAEIAFWKKEMDQEEKRAKEFDRQMKDVGPHDGHGGIGGIAGF*
Ga0181537_100350382	3300014201	Bog	MEFRCPYCQAPIYSRKNKICGVCEKPLPKELLMSDEQIAFWKSEMNQEEKRTEEFKQQIDDVGPHDGHGGAFRI*
Ga0181537_101074722	3300014201	Bog	MEFRCPYCQSPIYSRKNKICGVCEKPLPKELLMNDAEIAFWKKEMEEEEKRTKEFKQQIDDVSPHEGYAGGMPI*
Ga0163163_113981512	3300014325	Switchgrass Rhizosphere	MEFRCPNCQAPIYSRKNKICGVCEKPLPKELLMNDAEIAFWKKEMDKEEKEAKQFGQQLKNLGPHEGGGGLHI*
Ga0182018_100539963	3300014489	Palsa	MEFRCPYCQALIYSRKNKICGVCETPLPKELLFSDKQIVALKKEMEEEEKRSKEFKRQIDDVGPYEGHNIGGGIV*
Ga0182018_104972712	3300014489	Palsa	MEFRCPNCNAPIYSHKNKICGVCEKPLPKEFRMSDAETAFWKKEMDQKEKRAKEFGQQLKDAGPHDGWGGGAGITGF*
Ga0182010_101881852	3300014490	Fen	MEFRCPFCQSPIYSRKNKICGVCEKPLPEKLLFSDQQIADLKKQMDAEEKRTKQFKQQLDDVGPHDNGGDMGGIASF*
Ga0182017_101230082	3300014494	Fen	MEFRCPFCHSPIYSRKNKICGVCEKPLPEEILFSNQQVADLKKQMDAEEKQTKEFKRQIDDFGDHSKHVM*
Ga0182017_104659682	3300014494	Fen	MEFRCPFCHSPIYSRKNKICGVCEKPLPEELLFSDQQIADLKKQMDAEEKRTKQFKQQLDDVGPHDNGGGMGGIASF*
Ga0182011_102205612	3300014496	Fen	MEFRCPFCHSPIYSRKNKICGVCEKPLPKELLLTDEQVALLKKQTDAEEKREKEFFSQLNDLTKDSTGGPSIG*
Ga0182011_108078792	3300014496	Fen	MEFRCPFCQSPIYSRKNKICGVCEKPLPEELLFSDQQIADLKKQMDAEERRTKQFKQQLDDVGPHDNGGDMGGIASF*
Ga0182019_107683912	3300014498	Fen	MEFRCPYCNAPIYSRKNKICGVCEKPLPKELLLSDDQIATLKKEMEAEEKETEEFKQQIDDVCPRDGHGGAFII*
Ga0182024_1000225135	3300014501	Permafrost	MEFRCPNCNAPIYNRKTKICGVCEKPLPKEFLMNDAEIAFWKKQMDQEEKEAKEFGQQLKDIGPHDGHGGIGGIAGF*
Ga0181536_100378804	3300014638	Bog	MEFRCPYCHSPIYSRKNKICGVCEKPLHKELLLSDEQIAALKKEMDAEEKRAKEFEQQMDDVGPHEGSGGIGGIGKI*
Ga0182030_1000072336	3300014838	Bog	MEFCCPYCNAPIYSRKSKVCGVCEKPLPQELLLTDEQIAAIKKETDAEEKQEREFKQQLDNLGSHEHGRGFGF*
Ga0182030_100103186	3300014838	Bog	MEFRCPNCQSPIYSRKMKICGVCEKPLPKEFWMTDAEKTFRKQEMDKEEKLAKDFGQQLKDLGPHEGGSGLHI*
Ga0182027_104308132	3300014839	Fen	MEFRCPFCHSPIYSRKNKICGVCEKPLPEELLLSDEQAAALKKEMDTEEKRTKQFKQQMDDVGHHDDGLGIGGIASF*
Ga0182027_118413441	3300014839	Fen	MEFRCPFCHSPIYSRKNKICGVCEKPLPKELLLTDEQIALFKKQSDAEEKREKEFFSQITDLTRDSSGGSGIGGMGI*
Ga0187850_104541812	3300017941	Peatland	MEFRCPYCNAPIYSRKNKICGVCEKPLPAELLFSSEQIAALKKQSDLEEKEAKEFGQQLNDLGPHDHGGIGMI
Ga0187779_110838021	3300017959	Tropical Peatland	MEFRCPHCNAPIYSRKNKICGVCEKPLPPELLFSDQQIADLNEQTDEEEKRTKQFKQQIDDVGPHDHGGGISGL
Ga0187878_13507501	3300018005	Peatland	SRKNKICGVCEKPLPAELLFSSEQIAALKKQSDLEEKEAKEFGQQLNDLGPHDHGGIGMI
Ga0187889_102873632	3300018023	Peatland	MEFRCPFCHSPIYSRKNKICGVCEKPLPKELLLSDEQIAALKKEMDAEEKRAKEFEQQMDDVGPHEGSGGIGGIGKI
Ga0187770_106303052	3300018090	Tropical Peatland	MEFCCPYCHAPIYSRKNKICGVCEKPLPEELLLSDEQIAALKKETDAEEKREKEFFQQIHDIGPHDHGGGITGL
Ga0182022_11267182	3300019785	Fen	MEFRCPFCHSPIYSRKNKICGVCEKPLPEELLFSDQQIADLKKQMDAEEKRTKQFKQQLDDVGPHDNGGGMGGIASF
Ga0182028_15103123	3300019788	Fen	MEFRCPFCHSPIYSRKNKICGVCEKPLPEELLLSDEQAAALKKEMDTEEKRTKQFKQQMDDVGHHDDGLGIGGIASF
Ga0214190_100021416	3300020695	Freshwater	MEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDGHGGVGGMAGF
Ga0214178_10445482	3300020718	Freshwater	NCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDGHGGVGGMAGF
Ga0214202_10343081	3300020728	Freshwater	RARADARAGKFAARFERAEENLEMEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDGHGGVGGMAGF
Ga0210396_107118662	3300021180	Soil	MELRCPSCQAPVYSRKQKVCGVCEKPLPEGFWMSDAEKKFWKREMDKEEKQAKDFGKQVNDLGPHDGHGGLYI
Ga0210388_100017055	3300021181	Soil	MELHCPNCHAPVYSRKQKICGVCEKPLPEEFWMSDAEKNFWKQEMDKEEKQAKDFEKQVNDLGPHEHPGGLGGPLI
Ga0210388_103440553	3300021181	Soil	MEFRCPYCKAPIYSRKNKICGVCEKPLPKEFLMNDAEIAFWKLEMDKEEKQAKEFGQQIKDVGPHDGHGGIGGII
Ga0210385_104067482	3300021402	Soil	MEFRCPYCKAPIYSRKNKICGVCEKPLPKEFLMNDAEIAFWKLEMDKEEKQAKEFGQQIK
Ga0210397_103025342	3300021403	Soil	MEFRCPYCNAPIYSRKNKICGVCEKPLPKEFLMNDAEIAFWKQEMDKEEKEAKEFGQQIKDVGPHDGHGGIGGMI
Ga0210389_103762033	3300021404	Soil	PQCTEKNLKMELRCPSCQAPVYSRKQKVCGVCEKPLPEEFWMSDAEKKFWKREMDKEEKQAKDFGKQVNDLGPHDGHGGLYI
Ga0210391_109765482	3300021433	Soil	MELRCPSCQAPVYSRKQKVCGVCEKPLPEEFWMSDAEKKFWKREMDKEEKQAKDFGKQVNDLGPHDGHGGLYI
Ga0210392_106464672	3300021475	Soil	MELRCPSRQAPVYSRKQKVCGVCEKPLPEEFWMSDAEKKFWKREMDKEEKQAKDFGKQVNDLGPHDGHGGLYI
Ga0224534_100093618	3300022524	Soil	MEFRCPYCQAPIYSRKNKICGVCEKPLPKELLMSDAEIVFWKKEMDQEEKRAKEFDQQMNDVGPHDGHGGIGGIASF
Ga0224533_10031125	3300022526	Soil	MEFRCPFCHSPIYSRKNKICGVCEKPLPEEFLFSDQQVADLKKQMDAEEKQTKEFKQQIDDFGDHSKHVM
Ga0224558_11045422	3300023090	Soil	MEFRCPYCNAPIYSRKNKICGVCEKPLPKELLLSDNQIATLKKEMEAEEKQTEEFKQQIDDVGPHDGHGGAFRI
Ga0208111_10690931	3300025420	Freshwater	MEFRCPNCQAPIYSRKLKICGVCEKPLPKELLMNDAEIAFWKKQMDKEEKEAKDFGRQINDIGSHDG
Ga0265337_10001025	3300028556	Rhizosphere	MEFRCPYCQAPIYSRKDKICGVCEKPLPKELLFTDEQIALLKKQSDAEEKRTNEFKQQMDDVGPHEHLGGMGGMGI
Ga0265326_101971411	3300028558	Rhizosphere	MEFRCPYCQAPIYSRKDKICGVCEKPLPKELLFTDEQIALLKKQSDAEEKRTNEFKQQMDDVGPHEHYGGVGGMGI
Ga0302171_101594722	3300028651	Fen	MEFRCPNCQAPIYSRKNKICGVCEKPLPKELLMNNAEIAFWKKEMDKEEKEAKQFGQQLKDLGPHEGGSGLHI
Ga0265323_100161964	3300028653	Rhizosphere	MEFRCPFCHSPIYSRKNKICGVCEKPLPEELLFSDQQIADLKKQMDAEEKRTKQFKQQLDDVGPHDNGGDMGGIASF
Ga0265323_100812662	3300028653	Rhizosphere	MEFRCPYCQAPIYSRKNKICGVCEKPLPKELLLTDEQIALLKKQTDAEEKREKEFFSQITDLTRDSSGGSGIGGII
Ga0302267_100993762	3300028745	Bog	MEFRCPNCNAPIYSRKLKICGVCEGPLPKELLMNDAEIAFWKKEMDKEEKESKDFGRQIKDVGPHDSFGGGMPT
Ga0302222_104017872	3300028798	Palsa	MEFRCPYCQALIYSRKNKICGVCETPLPKELLFSDKQIVALKKEMEEEEKRSKEFKRQIDDVGPYEGHN
Ga0265338_1000024256	3300028800	Rhizosphere	MEFQCPFCHSPIYSRKNKVCGVCEKPLPQELLLTDEQIALFKKQMDQGEEQEKQFKQQVDDLGPHDRGGNLGGIASF
Ga0265338_100041446	3300028800	Rhizosphere	MEFLCPFCHSPIYSRKNKVCGVCERPLPQELLLTDEQIAALKKETDAEEKQEREFKQQMDNLGPHEHGRGSGF
Ga0302197_100747711	3300028873	Bog	MEFRCPNCNAPIYSRKLKICGVCEGPLPKELLMNDAEIAFWKKEMDKEEKESKDFGRQIKDVGPHDSFGGGMP
Ga0311368_104157032	3300029882	Palsa	MELRCPNCQAPVYSRKQKICGVCEKPLPKEFWMSDAEKSFWKKQMDKEEKQAKDFGKQVNDLGPHDGHGGLHI
Ga0311341_103667272	3300029908	Bog	CPNCNAPIYSRKLKICGVCEGPLPKELLMNDAEIAFWKKEMDKEEKESKDFGRQIKDVGPHDSFGGGMPT
Ga0311369_100560604	3300029910	Palsa	MEFRCPNCNAPIYSHKNKICGVCEKPLPKEFRMSDAETAFWKKEMDQKEKRAKEFGQQLKDAGPHDGWGGGAGITGF
Ga0170834_1109198361	3300031057	Forest Soil	MEFRCPYCQAPIYSRKLKVCGVCEKPLPKELLMNDAEIAFWKRQMDKEEKQAKQFEQQINDIGDHDHGGG
Ga0170824_1082230612	3300031231	Forest Soil	MEFRCPYCNAPIYSRKNKICGVCEKPLPKEFLMNDAEMAFWKQEMDKEEKQAKEFGQQIKDAGPHGGHGGVGGII
Ga0302324_1002592751	3300031236	Palsa	MEFRCPYCQALIYSRKNKICGVCETPLPKELLFSDKQIVALKKEMEEEEKRSKEFKRQIDDVGPYEGHNIGGGIV
Ga0302320_107540333	3300031524	Bog	MEFRCPYCNAPIYSRKNKICGVCEKPLPKELLLSDDQIATLKKEMETEEKETEEFKQQIDDVCPRDGHGGAFII
Ga0302326_101209525	3300031525	Palsa	MEFRCPYCQALIYSRKNKICGVCETPLPKELLFSDKQIVALKKEMEEEEKRSKEFKRQIDDVGPYEG
Ga0302319_103539482	3300031788	Bog	MEFRCPYCNAPIYSRKNKICGVCEKPLPEELLMSEAEIAFWKKEMDKEEKETKEFSQQMNDLGPHDRHSGMSGMI
Ga0316217_10000013209	3300031813	Freshwater	MEFRCPNCNAPIYSRKQKICGVCEKPLPKELLMSDAEIAFWKTEMDKEEKQAKEFGQQLKDIGPHDHGGGIGGII
Ga0335085_1000031720	3300032770	Soil	MEFRCPHCNALIYSRKNKMCGVCEKPLPPELLFSDQQIAELKEQTDEEEKRTKQFKQQIDDVGPHDHGGGISGL
Ga0335085_101889243	3300032770	Soil	MEFRCPFCHAPIYSRKNKICGVCEKPLPEELLFSDAQVAELKRQTDAEERREQEFKQQMNDLGPHEHGGSI
Ga0335079_1000631512	3300032783	Soil	MEFRCPHCNALIYSRKNKMCGVCEKPLPPELLFSDQQIADLKEQTDEEEKRTKQFKQQIDDVGPHDHGGGISGL
Ga0335079_101373123	3300032783	Soil	MEFRCPHCNAPIYSRKNKICGVCEKPLPPEFLLSDEQVAALRQQMDAEEKRLKEFKQQLHDLGDQAQGGI
Ga0335078_102865644	3300032805	Soil	MEFRCPYCDAPIYSRKDKICGVCEKPLPKEFWMSDEEKAFWKREMDKEEKQTKDFEQQLKDLGPHDGHGGIGIHI
Ga0335070_102867382	3300032829	Soil	MEFRCPFCHSPIYSRKNKVCGVCEKPLPPELLLSDEQIAELRKQMEAEDKRMNQFKHQLDDVGPHESGGGIGGIACC
Ga0335069_101063822	3300032893	Soil	MEFRCPHCHAPIYSRKNKICGVCEKPLPQGLLLSDEQVAALKKQMDAEERREKEFKQQMNDIGPHEGHGGLGGIAI
Ga0335069_125334692	3300032893	Soil	MEFRCPHCQAPIYSRKAKICGVCEQPLPPELLLSDEQAVFLKNQEKHEDERMKEFKQQLNDLGLHDRGGNIGSI
Ga0335071_102087293	3300032897	Soil	MEFRCPYCHSPIYSRKNKICGVCEKPLPEELLFSDQQVADLKKQMDQEEKELKQFKQQMDDLGPHEGGGGIGGIAGC
Ga0335071_102767913	3300032897	Soil	MEFRCPHCHAPIYSRKNKICGVCEKPLPQGLLLSDEQVAALKKQMDAEERREKEFKQQMNDIGPHEGHGGLGGVAI
Ga0335072_113907812	3300032898	Soil	MEFRCPFCNAPIYSRKNKICGVCEKPLPAELLFSGEQVKALNEEMDKEEKQAKDFEQQIDNLGPHDGHGGAFGI
Ga0335072_115934422	3300032898	Soil	MEFRCPYCHAPIYSRKNKICGVCEKPLPEELLFSDQQVADLKKQMEQEEKQTKEFDQQMDDLGPLDHGGPVL
Ga0335083_107435831	3300032954	Soil	RCPYCKAPVYSRKNKICGVCEKPLPEEFWMSDAEKSYWKQEMDKEEKQASDFKQQLKDLGPHDGSGGIHI
Ga0326728_10000410110	3300033402	Peat Soil	MEFRCPYCNAPIYSRKNKICGVCEKPLPKELLLSDEQVAELKKQMDTEEKREKEFKQQMNDIGPHDGHGGAFKI
Ga0310811_101330792	3300033475	Soil	MEFHCPYCNAPIYSRKNKICGVCEKPLPSELLFSEEQAAALKKQSDLEEKEAKEFGQQLKDVGPHDGHGGFGITGI
Ga0370501_0144753_401_634	3300034195	Untreated Peat Soil	MEFRCPFCQSPIYSRKNKICGVCEKPLPEKLLFSDQQIADLKKQMDAEERRTKQFKQQLDDVGPHDNGGDMGGIASF
Ga0370492_0011920_846_1079	3300034282	Untreated Peat Soil	MELFCPYCHSPIYSRKNKICGVCEKPLPKELLMSDAEIAFWKKEMDQEEKRAKEFDQQMNDVGPHDGHGGIGGIAGF
Ga0370492_0065363_653_886	3300034282	Untreated Peat Soil	MEFRCPNCNAPIYSRKTKICGVCEKPLPKEFWMNDAEIAFWKKQMDQEEKEAKEFGQQLKDIGPHDGHGGIGGIAGF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100197

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences