NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F100102

Metagenome Family F100102

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100102
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 40 residues
Representative Sequence MKRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPD
Number of Associated Samples 10
Number of Associated Scaffolds 101

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 12.00 %
% of genes near scaffold ends (potentially truncated) 24.51 %
% of genes from short scaffolds (< 2000 bps) 24.51 %
Associated GOLD sequencing projects 10
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.039 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Root
(90.196 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(93.137 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 52.86%    β-sheet: 0.00%    Coil/Unstructured: 47.14%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.04 %
All OrganismsrootAll Organisms1.96 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300014486|Ga0182004_10069639Not Available1800Open in IMG/M
3300014486|Ga0182004_10072578Not Available1732Open in IMG/M
3300014486|Ga0182004_10075069Not Available1679Open in IMG/M
3300014486|Ga0182004_10090874Not Available1400Open in IMG/M
3300014486|Ga0182004_10100000All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Chloridoideae → Eragrostideae → Eragrostidinae → Eragrostis → Eragrostis curvula1279Open in IMG/M
3300014486|Ga0182004_10126321All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor1028Open in IMG/M
3300014486|Ga0182004_10153024Not Available863Open in IMG/M
3300014486|Ga0182004_10179351Not Available751Open in IMG/M
3300014486|Ga0182004_10200547Not Available685Open in IMG/M
3300014486|Ga0182004_10201612Not Available682Open in IMG/M
3300014486|Ga0182004_10210492Not Available658Open in IMG/M
3300014486|Ga0182004_10210780Not Available657Open in IMG/M
3300014486|Ga0182004_10210780Not Available657Open in IMG/M
3300014486|Ga0182004_10220309Not Available634Open in IMG/M
3300014486|Ga0182004_10221353Not Available632Open in IMG/M
3300014486|Ga0182004_10247715Not Available579Open in IMG/M
3300014486|Ga0182004_10253954Not Available568Open in IMG/M
3300014486|Ga0182004_10270024Not Available542Open in IMG/M
3300014486|Ga0182004_10282997Not Available524Open in IMG/M
3300014486|Ga0182004_10286750Not Available519Open in IMG/M
3300014486|Ga0182004_10297046Not Available506Open in IMG/M
3300015262|Ga0182007_10228861Not Available659Open in IMG/M
3300015286|Ga0182176_1034110Not Available671Open in IMG/M
3300015342|Ga0182109_1095050Not Available693Open in IMG/M
3300017436|Ga0182209_1089546Not Available624Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
RootHost-Associated → Plants → Roots → Unclassified → Unclassified → Root90.20%
Miscanthus PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Miscanthus Phyllosphere5.88%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.94%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300014486Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaGHost-AssociatedOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300015265Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaGHost-AssociatedOpen in IMG/M
3300015279Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015286Miscanthus phyllosphere microbial communities from Michigan, USA - G6R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015308Miscanthus phyllosphere microbial communities from Michigan, USA - G6R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015342Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015355Miscanthus phyllosphere microbial communities from Michigan, USA - G6R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017436Miscanthus phyllosphere microbial communities from Michigan, USA - G6R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300027033Agave microbial communities from Guanajuato, Mexico - At.P.e (SPAdes)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0182004_1004233513300014486RootKLSSVCLEIVLILMQDRCTVCMEHTICMEINLDAPDGTP*
Ga0182004_1006963913300014486RootGSISLEIVLILIQGRCMVCMEHTICLEINLDAPDGTP*
Ga0182004_1007257813300014486RootVSLEIVLILMQGRCMVCMEHTICLEINLDAPNGTP*
Ga0182004_1007506913300014486RootVSLEIVLILMQGWCMVCMEHTICLEINLDAPDGTP*
Ga0182004_1008543913300014486RootMKRLKWKLGSICLEIVLTVMQDRFTVCMEHTICLEIN
Ga0182004_1008956113300014486RootMKRLNWKLGSVYLEIVLILMQDRCTVCMEHTICLEI
Ga0182004_1009087413300014486RootVKRLKWKLGLICLEIVLILMQDRCTVCMERTICLEINLDTPDRTP*
Ga0182004_1009358113300014486RootRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPDGAP*
Ga0182004_1010000023300014486RootSLEIVLILMQGRCMLCMEHTICLEINLDATDGPP*
Ga0182004_1010232823300014486RootKKLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPD*
Ga0182004_1010380113300014486RootVSLEIVLILMQGRCMVYMEHTKCLEINFDAPDGTP*
Ga0182004_1010396723300014486RootMKRLKWKLGSVSLEIVLILMQDRCTVCMEHTICLE
Ga0182004_1011519913300014486RootMKRLKWKLGLICLEIVLILMQDRCMICKEHTMCLEI
Ga0182004_1011541113300014486RootVKKHKWKLGLICLEIVLILMQDRCTVFMEHTICLEINLDTPDRTP*
Ga0182004_1012632123300014486RootGSIYLEIVLILMQDRCMVCMERTICLEINLDTPDRTL*
Ga0182004_1012726513300014486RootMKRLKWKLGSVCLEIVLTLMQNRCTVCMEHTICFEINWMH
Ga0182004_1013422913300014486RootMKRLKWKLGLVCLEIVLILMQDRCTVCMEHTICLEINL
Ga0182004_1013947413300014486RootVNRLKWKLGLVCSEIVLILMQDRCMVYMERTICSKI
Ga0182004_1014632313300014486RootMKRLKWKLNSVCLEIVLILMQDRCTVCMEHTICFEINLD
Ga0182004_1014677813300014486RootSVSLEIVLILMQGRCMICMEHTICLEINFDAPDGTP*
Ga0182004_1014695413300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPD
Ga0182004_1014798223300014486RootMLNWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPDG
Ga0182004_1014987813300014486RootMKRLKWKLGSVCLEIVLILKQDRCTVCMEHTICLE
Ga0182004_1015073013300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCMEQTICFEINL
Ga0182004_1015302413300014486RootMKRLKWKLGSVCLEIVLILMQDRCMVCMEHTICLEINLDA
Ga0182004_1015302613300014486RootKLGSVCLEIVLILVQDRCTVCMEHTICLEINDGTP*
Ga0182004_1015547113300014486RootVKRLKWKLGSVSLEIVLILMQGRCMVCMEHTICLEINFNAPDGTP*
Ga0182004_1015625413300014486RootRGSGKLGLICLEIVQILMQDRCMICMEHNICLEINLNAPNGTPR*
Ga0182004_1016537523300014486RootKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPDGTRG*
Ga0182004_1016561513300014486RootMKKLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEIN
Ga0182004_1016876813300014486RootKLGSVCLEIVLILMQDRCTVCMEHTICLEINLNAPDGTP*
Ga0182004_1017050613300014486RootKRLKWRVGSVCLEIELILMQDRCTICMEHTICLEFNLDALVGSPR*
Ga0182004_1017195413300014486RootMKRLKWKLSLVCLEIVLILMQDRCTVCMEHAICLE
Ga0182004_1017535123300014486RootVKRLKWRLGSVCLEIVLILMQDRCTICMEHTICLEINLDAQDGTPR*
Ga0182004_1017922513300014486RootKLGAVCLEIVLILMHRCMVCMERTICSKINVDAPDGNPR*
Ga0182004_1017935113300014486RootVSLEIVLILMQGRCMVCMEHTICLEINLDAHDGTP*
Ga0182004_1018544213300014486RootRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPDGPP*
Ga0182004_1018746213300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCMKHTICLEINLDAPD
Ga0182004_1019273013300014486RootRLKWRLGSVCLEIVLVLMQDRCMICMEHTICLEINLDAPDATP*
Ga0182004_1020054713300014486RootKLGSVSLEIVLNLMQGRCMVCMEHTICLEINLDAPDETP*
Ga0182004_1020123913300014486RootKLGSVSLEIVLILKQGRCMVCMEHTICLEINLDAPDGTP*
Ga0182004_1020161223300014486RootMKRLKWKLGSVFLEIVLILMQDRCTVCMEETICLEINLDAPDGTL*
Ga0182004_1020334013300014486RootMKRLKWKLGSVCLEIVLILMKDRCTVCMEHTIWLGINLDAPDGTP*
Ga0182004_1020458713300014486RootMKRLNWKLGSVYLEIVLIFMQHRCTVCMEHTICLEINF
Ga0182004_1020523713300014486RootRLKWKLGLVSLEIVLILKQGRCMVCMEHTICLEINLDAPDGTP*
Ga0182004_1020759813300014486RootMKRLKWKLSLVCLEIVLILMQDRCTVCMEHTICLEI
Ga0182004_1021049213300014486RootLGSVSLEIVLNLMQGRCMVCMEHIICLEINLDAPDGTP*
Ga0182004_1021054713300014486RootKLGSVSLEIVLILMQGRCMVCMERTICLEINLDAPDGTP*
Ga0182004_1021078013300014486RootMLKWRLGSLCLEIVLILMQDSCMICMEHTICLEINLDALD
Ga0182004_1021078023300014486RootKLGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPDGTP*
Ga0182004_1021747113300014486RootVSLEIMLILMQGRCMVCMEHTICLEINLDAPDGTP*
Ga0182004_1022030913300014486RootKPSSVTLEIVLILMQGRCMVCMEHIICLEINLDAPDGTP*
Ga0182004_1022099023300014486RootKLGSVCLEIVLILMQDRCTVCMKHTICLEINLDAPDGTP*
Ga0182004_1022119913300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCIEHTICLEINL
Ga0182004_1022135313300014486RootVSLEIVLILMQGRSMVCMEHTICLEINLDAPDGTP*
Ga0182004_1022272813300014486RootMWKLGLVRLEIVLILIQGRCMICMKHTICLEINLHAPKGTP
Ga0182004_1022490113300014486RootMEAPAGSSVKKHKWKLGLICLEIVLILVQDRCMICKEQTICLEINL
Ga0182004_1022786113300014486RootMKRLKWKLGLVSLEIVLILMQDRCTVCMEHTICSEIN
Ga0182004_1022803113300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLE
Ga0182004_1023227513300014486RootMKRLKWKLGSVSLEIVLILMQGRCMVCMEHTICLEINLDAPNG
Ga0182004_1023265713300014486RootVKRLKWKLGSVCLEIVLILMQDRCTVCMERTICSE
Ga0182004_1023281713300014486RootMKRLKWRLGSVYSEIVLVLMQDRCTNCMKHTICLEINLDAPDGTP*
Ga0182004_1023534813300014486RootRLGSVCLGIVLFLMQDRFTICMEHTICLEINLDAPDGTPR*
Ga0182004_1023592813300014486RootKRLKWKLGSVSLEIMLILMKDRCMVCMDHTICSEINLDAPNGTP*
Ga0182004_1023816013300014486RootMKRLKWMLGSVYLEIVLIMMKDRCTVCMEHTKSLDIKLGAPDGTP*
Ga0182004_1024171413300014486RootMKRLKWKLGSVCLDIVLMLMQDRCTVCMEHTIRLEI
Ga0182004_1024203413300014486RootKRLKWKLSSVSLEIVLILMQGRCMVCLEHTICFEINLDAPDGPP*
Ga0182004_1024538413300014486RootMKTLKWKVGSVCLEIVLILMQDRCTVCMEHTICLEINLDAPDG
Ga0182004_1024733413300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEI
Ga0182004_1024771513300014486RootVHKWKLGSVSLEIVLILMQGRCMVYMEHTICLEINLDASDG
Ga0182004_1025015223300014486RootMVKMLKWNLGSVCLEIVLILMQDRCTVCMEHTICSEINLDT
Ga0182004_1025154913300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINLYA
Ga0182004_1025253613300014486RootMKRLKWKLGSVYLEIVLILKQDRCPVCMEHTICLEINLDAP
Ga0182004_1025395413300014486RootSVSLEIVLILMQGRCMVCMEHTICLEINLDAPNGTP*
Ga0182004_1026547413300014486RootMKRIKWKLSSVCLDIVLILMQDRCTVCMEHTICLEINLD
Ga0182004_1026847713300014486RootMKRLKCKLGSVCSEILLILMQDRCMVCMERTICSEINLDAPDGT
Ga0182004_1026853613300014486RootWKLGSVNLEIVLILIEGRCMVCMEHTMCLEINLDALDETP*
Ga0182004_1026926013300014486RootKLGSVSLEIVLILMQGRCMVCMEHTICLEINLDALDGTP*
Ga0182004_1027002413300014486RootSVSLEIVLILMQGRCMLCMEHTICLEINLDAPDGPP*
Ga0182004_1027497713300014486RootMKRLKWKLSSVCLEIVLILMQDRCTVCMEHTICLEINLDA
Ga0182004_1027552713300014486RootMKRLKWRLGSVCLEIVLILMQDRCTIFMEHTICSEINLD
Ga0182004_1027800313300014486RootVKRLKWKLGSVSLEIVLILMQGRCMVCMEHTICLEINFDALDGTP*
Ga0182004_1027904513300014486RootMYSSVKRLKWNLGSVCLEIVLILMQDRCTVCMEHTICTEIN
Ga0182004_1028222923300014486RootMLGSVYLEIVLILMQDRCMVYMEHTICLEINLDAPDGTA*
Ga0182004_1028299723300014486RootMCVIWNLGSVCLEIVLILMQDRCTVCMEHTICSEI
Ga0182004_1028433113300014486RootGEEAQVKMLGPVCLEIVLILIKDSYMVCMEHTICSKIKLDASDGTPR*
Ga0182004_1028506723300014486RootMKRLKWKLGSVCLEIVLILMQDRCTVCMKHTICLEI
Ga0182004_1028675013300014486RootLVSLEIVLILMQSRCMVCMEHTICLEINLDAPDGTP
Ga0182004_1028699313300014486RootMKRLTWKLGSVCLEIVRILMHHRCTVCMEHTICMEINLDAPDGTP
Ga0182004_1029704613300014486RootLGLDSLEIVLILMQGRCMVCMEHIIFLEINLDAPDGTP*
Ga0182004_1029807513300014486RootMRLKWKLGSVCLEIVLTLMQGRCIVCMEHTICLEINLDAP
Ga0182004_1029990623300014486RootKWNLSLVYLEIVLVLMQDRCMLCMEHTICLEINTIRT*
Ga0182007_1022886123300015262RhizosphereSLKWMLGSVCLEIVLILMQDSCMVCMEHTICLEINLDAPDGSP*
Ga0182005_110051923300015265RhizosphereKRLKWKLGSACFDVVLILMQDRYTDCTGYTISLEINLYARNVTP*
Ga0182005_130367723300015265RhizosphereSVSLEIVLILMQGRCMVCMEHTICLEINFDAPDVTP*
Ga0182174_104576133300015279Miscanthus PhyllosphereVWVRLEIVLILTQDRCMVCMERTIGSEIVLDAPDGSPR*
Ga0182176_103411023300015286Miscanthus PhyllosphereMVPLVKRLKWKLISVLLEIVLILAQDRCPVCVERTIGSEI
Ga0182142_103171233300015308Miscanthus PhyllosphereAPFGLLDIVLILTQDRCMVCMEHTIASEIVLDAPDGTPRS*
Ga0182109_109505033300015342Miscanthus PhyllosphereLEIVLILTQDWFTVCVERTICSEIILDAPDGNPR*
Ga0182159_126357013300015355Miscanthus PhyllosphereMRLKWKLGSVHLEIVLILMQDKCTAYAKHTIGLENILDKPN*
Ga0182209_108954613300017436Miscanthus PhyllosphereMRLKWKLNSICLEIVLILAQDRCTVCDECTIDSEIVLDA
Ga0209372_103131723300027033AgaveMKRLKWKLGSVCLEIVLILMQDRCTVCMEHTICLEINL


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