Metagenome / Metatranscriptome Family F100023

Basic Information
Family ID	F100023
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	46 residues
Representative Sequence	DGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEVFGQAPATTAAH
Number of Associated Samples	89
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.88 %
% of genes near scaffold ends (potentially truncated)	94.17 %
% of genes from short scaffolds (< 2000 bps)	93.20 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Most Common Taxonomy
Group	Unclassified (51.456 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (16.505 % of family members)
Environment Ontology (ENVO)	Unclassified (27.184 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.456 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 0.00% Coil/Unstructured: 75.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00903	Glyoxalase	54.37
PF00296	Bac_luciferase	9.71
PF08241	Methyltransf_11	8.74
PF01261	AP_endonuc_2	4.85
PF13649	Methyltransf_25	4.85
PF13458	Peripla_BP_6	1.94
PF08450	SGL	1.94
PF03972	MmgE_PrpD	0.97
PF02371	Transposase_20	0.97
PF14903	WG_beta_rep	0.97
PF14534	DUF4440	0.97
PF02653	BPD_transp_2	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	9.71
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	1.94
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	1.94
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
All Organisms	root	All Organisms	48.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
cellular organisms	root	All Organisms → cellular organisms	48.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.60 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	11.65 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.91 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	11.65 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.91 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	11.65 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.46 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	10.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.94 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_101090095	All Organisms → cellular organisms → Archaea → Euryarchaeota	1087	Open in IMG/M
3300000955\|JGI1027J12803_103186016	Not Available	567	Open in IMG/M
3300000956\|JGI10216J12902_106417273	All Organisms → cellular organisms → Archaea → Euryarchaeota	1035	Open in IMG/M
3300000956\|JGI10216J12902_115690021	Not Available	531	Open in IMG/M
3300001431\|F14TB_101302369	Not Available	556	Open in IMG/M
3300002558\|JGI25385J37094_10182540	Not Available	562	Open in IMG/M
3300002561\|JGI25384J37096_10184810	Not Available	623	Open in IMG/M
3300004052\|Ga0055490_10213231	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300004268\|Ga0066398_10028587	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300005176\|Ga0066679_10923457	Not Available	548	Open in IMG/M
3300005181\|Ga0066678_10809333	Not Available	619	Open in IMG/M
3300005186\|Ga0066676_10055868	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
3300005186\|Ga0066676_10101238	All Organisms → cellular organisms → Bacteria	1749	Open in IMG/M
3300005332\|Ga0066388_100860675	All Organisms → cellular organisms → Bacteria	1490	Open in IMG/M
3300005334\|Ga0068869_100430892	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300005444\|Ga0070694_101100327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300005445\|Ga0070708_100095084	All Organisms → cellular organisms → Bacteria	2719	Open in IMG/M
3300005445\|Ga0070708_101069546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	756	Open in IMG/M
3300005451\|Ga0066681_10152143	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300005471\|Ga0070698_100385389	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300005536\|Ga0070697_100326107	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300005540\|Ga0066697_10790206	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	516	Open in IMG/M
3300005552\|Ga0066701_10624716	Not Available	653	Open in IMG/M
3300005558\|Ga0066698_11002344	Not Available	530	Open in IMG/M
3300005586\|Ga0066691_10276918	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005598\|Ga0066706_10110403	All Organisms → cellular organisms → Bacteria	2013	Open in IMG/M
3300005719\|Ga0068861_102487875	Not Available	521	Open in IMG/M
3300005764\|Ga0066903_108831002	Not Available	511	Open in IMG/M
3300006031\|Ga0066651_10740831	Not Available	530	Open in IMG/M
3300006969\|Ga0075419_11503335	Not Available	505	Open in IMG/M
3300007004\|Ga0079218_10755595	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300007004\|Ga0079218_13496814	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300009012\|Ga0066710_102304841	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	783	Open in IMG/M
3300009012\|Ga0066710_104473327	Not Available	522	Open in IMG/M
3300009088\|Ga0099830_10259051	Not Available	1378	Open in IMG/M
3300009147\|Ga0114129_11063473	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300009553\|Ga0105249_10950164	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300009795\|Ga0105059_1003978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1247	Open in IMG/M
3300009804\|Ga0105063_1020431	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	785	Open in IMG/M
3300009808\|Ga0105071_1024978	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300009814\|Ga0105082_1106886	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300009822\|Ga0105066_1063556	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	786	Open in IMG/M
3300010048\|Ga0126373_11098126	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300010304\|Ga0134088_10310730	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300010335\|Ga0134063_10072239	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1536	Open in IMG/M
3300010335\|Ga0134063_10185758	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300010335\|Ga0134063_10219158	Not Available	899	Open in IMG/M
3300010358\|Ga0126370_11647759	Not Available	615	Open in IMG/M
3300010359\|Ga0126376_10100293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2206	Open in IMG/M
3300010359\|Ga0126376_10113814	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2093	Open in IMG/M
3300010359\|Ga0126376_13046428	Not Available	518	Open in IMG/M
3300010366\|Ga0126379_12237336	Not Available	647	Open in IMG/M
3300010397\|Ga0134124_11271839	Not Available	758	Open in IMG/M
3300010399\|Ga0134127_12027696	Not Available	653	Open in IMG/M
3300010403\|Ga0134123_12771833	Not Available	558	Open in IMG/M
3300011438\|Ga0137451_1155802	Not Available	716	Open in IMG/M
3300012208\|Ga0137376_10245588	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1552	Open in IMG/M
3300012355\|Ga0137369_10399058	Not Available	992	Open in IMG/M
3300012362\|Ga0137361_10515577	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300012396\|Ga0134057_1156049	Not Available	606	Open in IMG/M
3300012519\|Ga0157352_1054481	Not Available	605	Open in IMG/M
3300012923\|Ga0137359_11242737	Not Available	633	Open in IMG/M
3300012960\|Ga0164301_10702761	Not Available	761	Open in IMG/M
3300012971\|Ga0126369_12295577	Not Available	626	Open in IMG/M
3300014862\|Ga0180096_1008005	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300017654\|Ga0134069_1306929	Not Available	564	Open in IMG/M
3300017656\|Ga0134112_10396139	Not Available	570	Open in IMG/M
3300017656\|Ga0134112_10448674	Not Available	540	Open in IMG/M
3300018058\|Ga0187766_10441752	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300018079\|Ga0184627_10493076	Not Available	633	Open in IMG/M
3300024330\|Ga0137417_1418736	All Organisms → cellular organisms → Bacteria	3781	Open in IMG/M
3300025905\|Ga0207685_10436093	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300025922\|Ga0207646_11035079	Not Available	724	Open in IMG/M
3300025941\|Ga0207711_10987163	Not Available	781	Open in IMG/M
3300025971\|Ga0210102_1111348	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300026285\|Ga0209438_1111455	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300026310\|Ga0209239_1376206	Not Available	500	Open in IMG/M
3300026532\|Ga0209160_1239465	Not Available	622	Open in IMG/M
3300026536\|Ga0209058_1064415	Not Available	2000	Open in IMG/M
3300026537\|Ga0209157_1070147	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300027032\|Ga0209877_1017583	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	673	Open in IMG/M
3300027056\|Ga0209879_1073948	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	538	Open in IMG/M
3300027169\|Ga0209897_1024391	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	854	Open in IMG/M
3300027821\|Ga0209811_10144831	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300027862\|Ga0209701_10605973	Not Available	580	Open in IMG/M
3300027874\|Ga0209465_10125431	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300028381\|Ga0268264_11312019	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300028807\|Ga0307305_10437966	Not Available	589	Open in IMG/M
3300031549\|Ga0318571_10230841	Not Available	673	Open in IMG/M
3300031720\|Ga0307469_11242277	Not Available	705	Open in IMG/M
3300031720\|Ga0307469_12203181	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300031724\|Ga0318500_10480524	Not Available	623	Open in IMG/M
3300031763\|Ga0318537_10222914	Not Available	701	Open in IMG/M
3300031820\|Ga0307473_10954429	Not Available	623	Open in IMG/M
3300031820\|Ga0307473_11363632	Not Available	533	Open in IMG/M
3300031880\|Ga0318544_10293758	Not Available	630	Open in IMG/M
3300032059\|Ga0318533_11178271	Not Available	561	Open in IMG/M
3300032122\|Ga0310895_10243073	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300032180\|Ga0307471_102883765	Not Available	610	Open in IMG/M
3300032180\|Ga0307471_104300407	Not Available	503	Open in IMG/M
3300032205\|Ga0307472_101516795	Not Available	655	Open in IMG/M
3300032205\|Ga0307472_101770399	Not Available	612	Open in IMG/M
3300034677\|Ga0314802_045522	Not Available	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.20%
Host-Associated	Host-Associated	6.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.35%
Plants	Host-Associated → Plants	6.80%
Aquatic	Environmental → Aquatic	4.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.88%
Sediment	Environmental → Aquatic → Sediment	2.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.91%
Marine	Environmental → Aquatic → Marine	1.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.99%
Loam	Environmental → Terrestrial → Soil → Loam	12.62%
Sand	Environmental → Terrestrial → Soil → Sand	7.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.16%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.62%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	7.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	16.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	7.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.77%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	7.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300004052	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009795	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300009808	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_40_50	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014862	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT293_16_1Da	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025971	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300027032	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30 (SPAdes)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027169	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034677	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1010900951	3300000559	Soil	DGKKLYDRKAPGAVDFLPALKEIHKIRDSIKEIFGVAPAPTGAH*
JGI1027J12803_1031860162	3300000955	Soil	KKLYDRKEPGAVDFLPALKEIHKIRDAIKEIFAQAPPAAAKAH*
JGI10216J12902_1064172731	3300000956	Soil	YLDGKKLYDRKEPGAVDFLPALKEIHKIRDSIKEIFAQAPPAAAKAH*
JGI10216J12902_1156900211	3300000956	Soil	PSDSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVAPAPAAH*
F14TB_1013023692	3300001431	Soil	PSDSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDSIKEIFGVAVAPAAH*
JGI25385J37094_101825402	3300002558	Grasslands Soil	YDRKAPGAVDFLPALKEIHKIRDAIKEVFGQAPATTAAH*
JGI25384J37096_101848101	3300002561	Grasslands Soil	DGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEVFGQAPATTAAH*
Ga0055490_102132311	3300004052	Natural And Restored Wetlands	FEVYLDGKKVYDRKEPGAVDFLPALREIHKIRDSIKQIFADAPPAPAAH*
Ga0066398_100285873	3300004268	Tropical Forest Soil	LDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEVFGVAVAPAAH*
Ga0066679_109234572	3300005176	Soil	DRKEPGAVDFLPALKEIHKIRDAIKEIFAQAPPAAAKAH*
Ga0066678_108093332	3300005181	Soil	PSDSGRFEVYLDGKKLYDRKEPGAVDFLPALREIHKIRDSIKEKFAALPPTPAPAKH*
Ga0066676_100558681	3300005186	Soil	SDSGRFEVYLDGKKLYDRKEPGAVDFLPALKEIHKIRDAIKEIFAQAPATAGSH*
Ga0066676_101012385	3300005186	Soil	SDSGRFEVYLDGKKLYDRKEPGAIDFLPALREIHKIRDSIKEKFAALPPTPAPAKH*
Ga0066388_1008606754	3300005332	Tropical Forest Soil	SGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEVFGVAVAPAAH*
Ga0068869_1004308923	3300005334	Miscanthus Rhizosphere	RFEVYLDGKKLYDRKEPGAVDFLPALKEIHKIRDAIKEVFAAAPASP*
Ga0070694_1011003273	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	SGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVATAPAAH*
Ga0070708_1000950841	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAEGKVHVEIVYRVDGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFDAAPPAAAH*
Ga0070708_1010695462	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	GKKLYDRKEPGAVDFLPALREIHKIRDAIGQIFAETPAAAASH*
Ga0066681_101521431	3300005451	Soil	FEVYLDGKKLYDRKEPGAVDFLPALREIHKIRDSIKEKFAALPPTPAPAKH*
Ga0070698_1003853892	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAEGKVHVEIVYRVDGKKLYDRKEPAAVDFLPALKEIHKIRDAIREVFDAAPPAAAH*
Ga0070697_1003261072	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAEGKVHVEIVYRVDGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVF
Ga0066697_107902062	3300005540	Soil	YVDGKKVYDRKEEGAVDFLPALREIHKIRDSIAEVFAQAPAAAAH*
Ga0066701_106247161	3300005552	Soil	EKGRFEVYLDGKKVYDRKEPGAVDFLPALQEIHKIRDTIREMFTGEPAAAASH*
Ga0066698_110023441	3300005558	Soil	PGAVDFLPALKEIHKIRDAIKEVFGQAPATTAAH*
Ga0066691_102769181	3300005586	Soil	SDSGRFEVYLDGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFDAAPPAAAH*
Ga0066706_101104032	3300005598	Soil	VYLDGKKVYDRKEPGAVDFLPALREIHKVRDTIREMFAGEPAATALH*
Ga0068861_1024878752	3300005719	Switchgrass Rhizosphere	KLYDRKAPGAVDFLPALKEIHKIRDSIKEIFGVAPTPAAH*
Ga0066903_1088310021	3300005764	Tropical Forest Soil	EVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDSIKEIFGVAVAPAAH*
Ga0066651_107408311	3300006031	Soil	GAVDFLPALREIHKIRDSIKEKFAALPPTPAPAKH*
Ga0075419_115033351	3300006969	Populus Rhizosphere	KAPGAVDFLPALKEIHKIRDAIKEIFGVATAPAAH*
Ga0079218_107555953	3300007004	Agricultural Soil	DGKKLYDRKEPGAVDFLPALKEIHKIRDAIKDIFAAAPPAPASH*
Ga0079218_134968141	3300007004	Agricultural Soil	PAGKGIFQVFVDGKKMYDRQEPGAVDFLPALKEIHKIRDHIKEVFAKEPAAASH*
Ga0066710_1023048411	3300009012	Grasslands Soil	VYLDGKKVYDRKEPGAVDFLPALREIHKVRDTIREMFAGEPAATALH
Ga0066710_1044733272	3300009012	Grasslands Soil	DGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEVFGQAPATTAAH
Ga0099830_102590513	3300009088	Vadose Zone Soil	DGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFAAAPPVAAG*
Ga0114129_110634731	3300009147	Populus Rhizosphere	DGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFAGAQPTPAAH*
Ga0105249_109501642	3300009553	Switchgrass Rhizosphere	DGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFANAPATTGAPWIVESL*
Ga0105059_10039783	3300009795	Groundwater Sand	YLDGKKLYDRKEPGAVDFLPALKEIHKIRETIREKFAEEPATAATH*
Ga0105063_10204312	3300009804	Groundwater Sand	AKGVFEVFLDGKKVYDRKDPAFVDFLPALKEIHKIRETIREKFAEEPATAATH*
Ga0105071_10249781	3300009808	Groundwater Sand	KLYDRKAPDAVDFLPALKEIHKIRDAIKEVFGQTPAPAAASH*
Ga0105082_11068861	3300009814	Groundwater Sand	RKDPAFVDFLPALKEIHKIRETIREKFAEEPATAATH*
Ga0105066_10635561	3300009822	Groundwater Sand	MYDRKDPAYVDFLPALKEIHKIRDAIREKFAAEPAAAATH*
Ga0126373_110981263	3300010048	Tropical Forest Soil	EVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVATAPAAH*
Ga0134088_103107301	3300010304	Grasslands Soil	KLYDRKAPGAVDFLPALKEIHKIRDAIKEIFAGAQPTPAAH*
Ga0134063_100722391	3300010335	Grasslands Soil	SDSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFAGAQPTPAAH*
Ga0134063_101857581	3300010335	Grasslands Soil	SDSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGQAPATTAAH*
Ga0134063_102191581	3300010335	Grasslands Soil	DGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFDAAPPAAAH*
Ga0126370_116477593	3300010358	Tropical Forest Soil	YLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVPVAAAH*
Ga0126376_101002934	3300010359	Tropical Forest Soil	DSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEVFGVAVAPAAH*
Ga0126376_101138144	3300010359	Tropical Forest Soil	DSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVPVAAAH*
Ga0126376_130464281	3300010359	Tropical Forest Soil	KEPGAVGFLPALKEIHKIRDAIRDVFAAAPPAAAAH*
Ga0126379_122373361	3300010366	Tropical Forest Soil	SDSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFANAPATTAAH*
Ga0134124_112718391	3300010397	Terrestrial Soil	DGKKLYDRKEPGAVDFLPALKEIHKIRDAIKEVFAAAPASP*
Ga0134127_120276963	3300010399	Terrestrial Soil	FEVYLDGKKLYDRKEPGAVDFLPALQEIHKIRDAIKEVFAAAPASP*
Ga0134123_127718331	3300010403	Terrestrial Soil	KLYDRKEPGAVDFLPALKEIHKIRDAIKDVFAAAPASP*
Ga0137451_11558023	3300011438	Soil	DRKEPGAVDFLPALKEIHKIRDAIKDVFAAAPASP*
Ga0137376_102455881	3300012208	Vadose Zone Soil	PGAVDFLPALKEIHKIRDAIKEIFAGAQPTPAAH*
Ga0137369_103990581	3300012355	Vadose Zone Soil	EKGRFEVYVDGKKLYDRKEPGAVDSLPALREIHKIRDAIGQIFAEAPAAASH*
Ga0137361_105155771	3300012362	Vadose Zone Soil	KLYDRKEPGAVDFLPALKEIHKIRDAIKQIFAEAPATPAAH*
Ga0134057_11560493	3300012396	Grasslands Soil	LDGKKLYDRKAPGAVDFLPALKEIHKIRDSIKEIFGVAPAPAAH*
Ga0157352_10544812	3300012519	Unplanted Soil	SDSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVAPAPAAH*
Ga0137359_112427373	3300012923	Vadose Zone Soil	VYLDGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFDAAPPAAAH*
Ga0164301_107027611	3300012960	Soil	KKLYDRKEAGAVDFLPALKEIHKIRDAIKEVFAAAPPTPAAH*
Ga0126369_122955771	3300012971	Tropical Forest Soil	LYDRKAPGAVDFLPALKEIHKIRDAIREIFAEAPATPAAH*
Ga0180096_10080051	3300014862	Soil	RFEVYLDGKKLYDRKEPGAVDFLPALKEIHKIRDAIKEVFAAAPPTPATH*
Ga0134069_13069291	3300017654	Grasslands Soil	IYVDGKKVYDRKEEGAVDFLPALKEIHKIRDAIREVFDAAQPAAAH
Ga0134112_103961391	3300017656	Grasslands Soil	KKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFAGAQPTPAAH
Ga0134112_104486741	3300017656	Grasslands Soil	RKAPGAVDFLPALKEIHKIRDAIKEVFGQAPAPAAASH
Ga0187766_104417521	3300018058	Tropical Peatland	VYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVATAPAAH
Ga0184627_104930761	3300018079	Groundwater Sediment	KGVFEVYVDGKKVYDRKEPGAVDFLPALKEIHKIRETIREMFAEEPAVAASH
Ga0137417_14187365	3300024330	Vadose Zone Soil	VYLDGKKLYDRKEPGAIDFLPALKEIHKIRDSIKEKFALLPPTPAPAKH
Ga0207685_104360932	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	KKMYDRKEPGAVDFLPALREIHKIRDAVREKLGEPVPVAAAH
Ga0207646_110350791	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MAEGKVHVEIVYRVDGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFDAAPPAAAH
Ga0207711_109871631	3300025941	Switchgrass Rhizosphere	SDSGRFEVYLDGKKLYDRKEPGAVDFLPALKEIHKIRDAIKEVFAAAPASP
Ga0210102_11113481	3300025971	Natural And Restored Wetlands	FEVYLDGKKVYDRKEPGAVDFLPALREIHKIRDSIKQIFADAPPAPAAH
Ga0209438_11114551	3300026285	Grasslands Soil	VYLDGKKLYDRKAPGAIDFLPALKEIHKIRDAIKEIFGVATAPAAH
Ga0209239_13762062	3300026310	Grasslands Soil	GKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFAGAQPTPAAH
Ga0209160_12394651	3300026532	Soil	EVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFAGAQPTPAAH
Ga0209058_10644151	3300026536	Soil	LYDRKEPGAVDFLPALKEIHKIRDAIREVFDAAPPAAAH
Ga0209157_10701471	3300026537	Soil	SGRFEVYLDGKKLYDRKEPGAVDFLPALREIHKIRDSIKEKFAALPATPAPAKH
Ga0209877_10175832	3300027032	Groundwater Sand	KKMYDRKDPAYVDFLPALKEIHKIRDAIREKFADEPAAAATH
Ga0209879_10739481	3300027056	Groundwater Sand	SAKGVFEVYVDGKKMYDRKDPAYVDFLPALKEIHKIRDAVREKFADEPAPAATH
Ga0209897_10243911	3300027169	Groundwater Sand	KDPAYVDFLPALKEIHKIRDAIREKFADEPAAAATH
Ga0209811_101448311	3300027821	Surface Soil	RKEAGAVDFLPALKEIHKIRDAIKEVFAAAPPTPAAH
Ga0209701_106059731	3300027862	Vadose Zone Soil	DGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFAAAPPVAAG
Ga0209465_101254311	3300027874	Tropical Forest Soil	SDSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVPVAAAH
Ga0268264_113120191	3300028381	Switchgrass Rhizosphere	KKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFANAPATTGAPWIVESL
Ga0307305_104379663	3300028807	Soil	LDGKKLYDRKEPGAVDFLPALKEIHKIRDAIRDVFAAAAPAAG
Ga0318571_102308411	3300031549	Soil	EVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVPVAAAH
Ga0307469_112422773	3300031720	Hardwood Forest Soil	EVYLDGKKLYDRKAPGAIDFLPALKEIHKIRDAIKEIFGVATAPAAH
Ga0307469_122031811	3300031720	Hardwood Forest Soil	TGITFTPAGKGIFEVYVDGKKMYDRKEPGAVDFLPALREIHKIRDAVREKLGEPVPVAAA
Ga0318500_104805241	3300031724	Soil	DSGRFEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVPVAAAH
Ga0318537_102229143	3300031763	Soil	YLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVPVAAAH
Ga0307473_109544293	3300031820	Hardwood Forest Soil	LDGKKLYDRKEPGAVDFLPALKEIHKIRDAIKEVFAAAPASP
Ga0307473_113636322	3300031820	Hardwood Forest Soil	SDSGRFEVYLDGKKLYDRKAPGAIDFLPALKEIHKIRDAIKEIFGVAPAPAAH
Ga0318544_102937583	3300031880	Soil	YDRKAPGAVDFLPALKEIHKIRDAIKEIFGVPVAAAH
Ga0318533_111782711	3300032059	Soil	FEVYLDGKKLYDRKAPGAVDFLPALKEIHKIRDAIKEIFGVATAPAAH
Ga0310895_102430733	3300032122	Soil	KAPGAIDFLPALKEIHKIRDAIKEIFGVATAPAAH
Ga0307471_1028837652	3300032180	Hardwood Forest Soil	HVEIVYSVDGKKLYDRKEPGAVDFLPALKEIHKIRDAIREVFAAAPPAAAAH
Ga0307471_1043004072	3300032180	Hardwood Forest Soil	KKLYDRKEPGAVDFLPALKEIHKIRDAIRQVFETPTA
Ga0307472_1015167952	3300032205	Hardwood Forest Soil	PSDSGRFEVYLDGKKLYDRKAPGAIDFLPALKEIHKIRDAIKEIFGVAPTPAAH
Ga0307472_1017703993	3300032205	Hardwood Forest Soil	YDRKAPGAVDFLPALKEIHKIRDSIKEIFGVAPAPAAH
Ga0314802_045522_353_508	3300034677	Soil	SGRFEIYLDGKKLYDRKAPGAVDFLPALKEIHKIRDSIKEIFGVAPTPAAH

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F100023

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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