Metagenome Family F100019

Basic Information
Family ID	F100019
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	61 residues
Representative Sequence	MRRNALLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR
Number of Associated Samples	95
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.61 %
% of genes near scaffold ends (potentially truncated)	33.01 %
% of genes from short scaffolds (< 2000 bps)	83.50 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Most Common Taxonomy
Group	Bacteria (90.291 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.650 % of family members)
Environment Ontology (ENVO)	Unclassified (37.864 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.340 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 18.89% β-sheet: 12.22% Coil/Unstructured: 68.89%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00133	tRNA-synt_1	48.54
PF08264	Anticodon_1	2.91
PF01790	LGT	0.97
PF01979	Amidohydro_1	0.97
PF09350	DJC28_CD	0.97
PF00440	TetR_N	0.97
PF01252	Peptidase_A8	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	48.54
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	48.54
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	48.54
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	48.54
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	1.94
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.29 %
Unclassified	root	N/A	9.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.29 %
Unclassified	root	N/A	9.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.29 %
Unclassified	root	N/A	9.71 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.49 %
Unclassified	root	N/A	9.71 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.88 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	1.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	50.49 %
Unclassified	root	N/A	9.71 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.94 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.49 %
Unclassified	root	N/A	9.71 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.49 %
Unclassified	root	N/A	9.71 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	1.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.49 %
Unclassified	root	N/A	9.71 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.49 %
Unclassified	root	N/A	9.71 %
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1.94 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105755492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300000956\|JGI10216J12902_109737120	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300001431\|F14TB_102265663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300002906\|JGI25614J43888_10099224	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	771	Open in IMG/M
3300004114\|Ga0062593_100931053	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300004114\|Ga0062593_101591255	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300004157\|Ga0062590_101319697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300004479\|Ga0062595_101791994	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300004480\|Ga0062592_101665124	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300004480\|Ga0062592_102405061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300005093\|Ga0062594_101103286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300005174\|Ga0066680_10018596	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3759	Open in IMG/M
3300005328\|Ga0070676_10027925	All Organisms → cellular organisms → Bacteria	3204	Open in IMG/M
3300005330\|Ga0070690_100051644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2625	Open in IMG/M
3300005336\|Ga0070680_101705612	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005347\|Ga0070668_101791021	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300005355\|Ga0070671_100747884	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300005406\|Ga0070703_10131177	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300005445\|Ga0070708_100007594	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8681	Open in IMG/M
3300005445\|Ga0070708_100174697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2007	Open in IMG/M
3300005445\|Ga0070708_101161611	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300005455\|Ga0070663_100100872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2154	Open in IMG/M
3300005459\|Ga0068867_102185478	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005536\|Ga0070697_100410020	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300005561\|Ga0066699_10322064	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1103	Open in IMG/M
3300005564\|Ga0070664_101369506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300005569\|Ga0066705_10048793	All Organisms → cellular organisms → Bacteria	2370	Open in IMG/M
3300005578\|Ga0068854_101249044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300005840\|Ga0068870_10386989	Not Available	907	Open in IMG/M
3300005844\|Ga0068862_102561779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300005993\|Ga0080027_10313272	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300006031\|Ga0066651_10227034	Not Available	990	Open in IMG/M
3300006038\|Ga0075365_10880642	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300006845\|Ga0075421_100006535	All Organisms → cellular organisms → Bacteria	14241	Open in IMG/M
3300006852\|Ga0075433_10926882	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	759	Open in IMG/M
3300006852\|Ga0075433_10931974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300006880\|Ga0075429_101175283	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	670	Open in IMG/M
3300006969\|Ga0075419_11324159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300009012\|Ga0066710_104234106	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009038\|Ga0099829_11012339	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300009089\|Ga0099828_11047596	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300009090\|Ga0099827_10140207	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1969	Open in IMG/M
3300009094\|Ga0111539_10003284	All Organisms → cellular organisms → Bacteria	21389	Open in IMG/M
3300009098\|Ga0105245_10503200	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1228	Open in IMG/M
3300009148\|Ga0105243_10020412	All Organisms → cellular organisms → Bacteria	5024	Open in IMG/M
3300010042\|Ga0126314_11395543	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300010400\|Ga0134122_10223784	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300011119\|Ga0105246_11726904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300011429\|Ga0137455_1227518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300012212\|Ga0150985_106985551	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300012350\|Ga0137372_10395348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1048	Open in IMG/M
3300012685\|Ga0137397_10916155	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300012901\|Ga0157288_10167609	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300012922\|Ga0137394_10285670	Not Available	1410	Open in IMG/M
3300012922\|Ga0137394_11268702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300012944\|Ga0137410_11581848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300012955\|Ga0164298_11301899	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300012971\|Ga0126369_13301801	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300013297\|Ga0157378_13214701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300013306\|Ga0163162_13416567	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300014325\|Ga0163163_12120411	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300017792\|Ga0163161_10682555	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300018468\|Ga0066662_10565251	Not Available	1055	Open in IMG/M
3300018476\|Ga0190274_11167076	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300018476\|Ga0190274_11379278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300019361\|Ga0173482_10436829	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300022756\|Ga0222622_10378027	Not Available	993	Open in IMG/M
3300023263\|Ga0247800_1090192	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300025885\|Ga0207653_10049795	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1392	Open in IMG/M
3300025901\|Ga0207688_10858694	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300025907\|Ga0207645_11106975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300025908\|Ga0207643_10560010	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300025910\|Ga0207684_10698938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300025917\|Ga0207660_11694417	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300025922\|Ga0207646_10164119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2005	Open in IMG/M
3300025931\|Ga0207644_10239878	Not Available	1443	Open in IMG/M
3300025932\|Ga0207690_10948834	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300025934\|Ga0207686_10353414	Not Available	1107	Open in IMG/M
3300025936\|Ga0207670_11256867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300025981\|Ga0207640_10693452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300026089\|Ga0207648_11743353	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	584	Open in IMG/M
3300026281\|Ga0209863_10074357	All Organisms → cellular organisms → Bacteria → Proteobacteria	1002	Open in IMG/M
3300026319\|Ga0209647_1004438	All Organisms → cellular organisms → Bacteria	10564	Open in IMG/M
3300026328\|Ga0209802_1036256	Not Available	2546	Open in IMG/M
3300026530\|Ga0209807_1069421	Not Available	1582	Open in IMG/M
3300027561\|Ga0209887_1083756	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300027880\|Ga0209481_10714549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300027882\|Ga0209590_10044360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2440	Open in IMG/M
3300027909\|Ga0209382_10013280	All Organisms → cellular organisms → Bacteria	10130	Open in IMG/M
3300027961\|Ga0209853_1020443	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300028819\|Ga0307296_10372438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300028824\|Ga0307310_10291696	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300028828\|Ga0307312_10699717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300031170\|Ga0307498_10068344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300031198\|Ga0307500_10132329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300031226\|Ga0307497_10292877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300031965\|Ga0326597_10019316	All Organisms → cellular organisms → Bacteria	8829	Open in IMG/M
3300032000\|Ga0310903_10231708	Not Available	880	Open in IMG/M
3300032013\|Ga0310906_10765950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300032180\|Ga0307471_101150823	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300033407\|Ga0214472_11644434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300033407\|Ga0214472_11657360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300034115\|Ga0364945_0282250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.99%
Host-Associated	Host-Associated	33.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.05%
Plants	Host-Associated → Plants	33.01%
Aquatic	Environmental → Aquatic	1.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.08%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.68%
Sediment	Environmental → Aquatic → Sediment	1.94%
Roots	Host-Associated → Plants → Roots	1.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.57%
Loam	Environmental → Terrestrial → Soil → Loam	12.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Sand	Environmental → Terrestrial → Soil → Sand	1.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.62%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.77%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	6.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.94%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	1.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1057554921	3300000364	Soil	MRRNALLLLVLLVLPWLGCTNGQECDRCSSDQDCKSGLVCNSFSDGSKRCGTGLGATTCRVR*
JGI10216J12902_1097371202	3300000956	Soil	MRRSTSLLLLMLLVVPWYGCTKGNECDVCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
F14TB_1022656632	3300001431	Soil	SLLLLMLLVVPWYGCTKGNECDVCSSDEDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
JGI25614J43888_100992242	3300002906	Grasslands Soil	MRRNALLLLMLLILPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR*
Ga0062593_1009310531	3300004114	Soil	MRRSALLLLLLLVLPWLGCAKGQECDRCSSDEDCKSGFVCTSFSDGSKRCGTGLGATTCRVR*
Ga0062593_1015912552	3300004114	Soil	MRRNALLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNAFSDGSKRCGTGVGATTC
Ga0062590_1013196971	3300004157	Soil	LLLVLPWLGCAKGQECDRCSSDEDCKSGFVCTSFSDGSKRCGTGLGATTCRVR*
Ga0062595_1017919942	3300004479	Soil	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKSGFVCNSFSDGSKRCGTGVGATTCR
Ga0062592_1016651242	3300004480	Soil	MRPSALLLLLLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR*
Ga0062592_1024050612	3300004480	Soil	LVLPWLGCAKGQECDRCSSDEDCKSGFVCTSFSDGSKRCGTGLGATTCRVR*
Ga0062594_1011032862	3300005093	Soil	MRRSALLLILLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR*
Ga0066680_100185963	3300005174	Soil	MRRRAALLMLLLVVLPWLGCSGGKECDRCSSDSDCKSGFVCTSFSDGSKRCGTGVGATTCRVR*
Ga0070676_100279251	3300005328	Miscanthus Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR*
Ga0070690_1000516443	3300005330	Switchgrass Rhizosphere	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0070680_1017056121	3300005336	Corn Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGVG
Ga0070668_1017910212	3300005347	Switchgrass Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTG
Ga0070671_1007478842	3300005355	Switchgrass Rhizosphere	MRRNALLLLLLLVLPWLGCAKGQECDRCSSDDDCKSGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0070703_101311771	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR*
Ga0070708_1000075943	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGLICNSFSDGSKRCGTGTGATTCRVR*
Ga0070708_1001746973	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRAALLMLLLVVLPWLGCSGGKECDRCSSDSDCKSGFVCTTFSDNSKRCGTGVGATTCRVR*
Ga0070708_1011616112	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGICNSFSDGSKRCGTGTGATTCRVR*
Ga0070663_1001008723	3300005455	Corn Rhizosphere	SALLLLLLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR*
Ga0068867_1021854782	3300005459	Miscanthus Rhizosphere	RNALLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0070697_1004100201	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTMRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR*
Ga0066699_103220642	3300005561	Soil	MRRYAALLLLVLLMLPIACAKGQECDTCSADTDCKSPLICNGFSDGSKRCGTGTGATTCRVR*
Ga0070664_1013695062	3300005564	Corn Rhizosphere	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKSGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0066705_100487932	3300005569	Soil	MRRRTSWLLLVLTVLPWLGCTNGQECDRCSSDTDCKSGFVCTSFSDGSKRCGTGVGATTCRVR*
Ga0068854_1012490442	3300005578	Corn Rhizosphere	MRRNALLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0068870_103869891	3300005840	Miscanthus Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGVGAT
Ga0068862_1025617792	3300005844	Switchgrass Rhizosphere	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKQGFVCTSFSDGSKRCGTGVGATTCRVR*
Ga0080027_103132722	3300005993	Prmafrost Soil	MRRSALLLLVLLVLPWLGCAKGNECDVCSSDTDCKQGFICNGFSDGSKRCGTGVGATTCRVR*
Ga0066651_102270342	3300006031	Soil	MRRNALLLLLLLILPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR*
Ga0075365_108806422	3300006038	Populus Endosphere	MRPSALLLLLLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCR
Ga0075421_10000653515	3300006845	Populus Rhizosphere	MRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0075433_109268822	3300006852	Populus Rhizosphere	MRRNALLLLLLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0075433_109319741	3300006852	Populus Rhizosphere	RSVTMRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR*
Ga0075429_1011752831	3300006880	Populus Rhizosphere	ILPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0075419_113241591	3300006969	Populus Rhizosphere	VTMRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0066710_1042341062	3300009012	Grasslands Soil	MRRGALLLLLVLAVVPWLGCTKGNECDRCKTDTDCKQGFVCAHFSDDNSLRCASGVGA
Ga0099829_110123391	3300009038	Vadose Zone Soil	MRRRAALLMVLLLVLPWLGCGAGQECDRCSSDSDCKSGFLCTSFSDGSKRCGT
Ga0099828_110475961	3300009089	Vadose Zone Soil	MMRRRAALLLLVLVLPWVGCAGGKECDRCSSDSDCKQGFVCTSFSDGSKRCGTGTGATTCRVR*
Ga0099827_101402072	3300009090	Vadose Zone Soil	MRRNASLLLLVLLVLPWMGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR*
Ga0111539_100032847	3300009094	Populus Rhizosphere	MTKENPGRSVAMRPSALLLLLLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR*
Ga0105245_105032001	3300009098	Miscanthus Rhizosphere	MTKANPGRSVAMRRSALLLILLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR*
Ga0105243_100204124	3300009148	Miscanthus Rhizosphere	MTKANPGRSVAMRRSALLLILLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR*
Ga0126314_113955432	3300010042	Serpentine Soil	MRRSASLLLVLVLVLPWLGCTKGNECDRCSSDEDCKQGFVCNSFSDGSKRCGTGLGATTCRVR*
Ga0134122_102237842	3300010400	Terrestrial Soil	MKLSRFVLLILTCLPLFGCSSGGECDKCSDDQDCKSGFVCSTFSDGSKRCGTGVGASTCRVR*
Ga0105246_117269041	3300011119	Miscanthus Rhizosphere	MRRSTLLLLLLLVLPWLGCAKGQECDRCSSDEDCKEGFLCTSFSDGSKRCGTGVGATTCRVR*
Ga0137455_12275182	3300011429	Soil	MRRNALLLLVLLVLPWLGCAKGQECDRCDSDDDCKQGFVCNSFSDGSKRCGTGLGATTCRVR*
Ga0150985_1069855513	3300012212	Avena Fatua Rhizosphere	KDWSVTMRRGASLLLLVLLVVPWFGCGNGQECDRCSQDTDCTSGFLCTSFSDGSKRCGTGVGATTCRVR*
Ga0137372_103953481	3300012350	Vadose Zone Soil	MRRNALLLLMLLILPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATICRVR*
Ga0137397_109161551	3300012685	Vadose Zone Soil	MRRNAPLLLLVLLLLPWLGCAKGQECDVCSSDDDCKQGFVCTSFSDGSKRCGTGTGATTCRVR*
Ga0157288_101676091	3300012901	Soil	MTKENPGRSVAMRRSALLLLLLLVLPWLGCAKGQECDRCSSDEDCKEGFLCTSFSDGSKRCGTGVGATTCRVR*
Ga0137394_102856702	3300012922	Vadose Zone Soil	MRRNASLLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR*
Ga0137394_112687021	3300012922	Vadose Zone Soil	MRRNALLWLLLLVLPWLGCAKGQECDRCSSDSDCKQGFVCNSFSDNSKRCGTGTGATTCRVR*
Ga0137410_115818481	3300012944	Vadose Zone Soil	MRRNALLLLVLLVLPWMGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGVGATTCRVR*
Ga0164298_113018991	3300012955	Soil	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCR
Ga0126369_133018012	3300012971	Tropical Forest Soil	MRPRAAALGLLLLLVVPWLGCSSGQECDVCSSDSDCKSGFVCTTFSDGSKRCGTGVGASTCRVR*
Ga0157378_132147011	3300013297	Miscanthus Rhizosphere	MLRALRRSVTMRRNALLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR*
Ga0163162_134165672	3300013306	Switchgrass Rhizosphere	MRPSALLLLLLLVLPWLGCAKGQECDRCSSDEDCKSGFVCTSFSDGSKRCGTG
Ga0163163_121204112	3300014325	Switchgrass Rhizosphere	MRRNALLLLVLLVLPWVGCAKGQECDVCSSDDDCKQGFVCNSFSDGSERCGTGVGAT
Ga0163161_106825552	3300017792	Switchgrass Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0066662_105652511	3300018468	Grasslands Soil	MRRRAALLMLLLVLLPWLGCSGGKECDRCSSDSDCKSRFVCTSFSDGSKRCGTGV
Ga0190274_111670762	3300018476	Soil	MRRSTSLLLLMLLVVPWYGCTKGNECDVCSSDDDGKQGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0190274_113792782	3300018476	Soil	MRRNTLLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATQCRVRR
Ga0173482_104368291	3300019361	Soil	MRRNALLLLLLLVLPWLGCAKGQECDRCSSDDDCKSGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0222622_103780272	3300022756	Groundwater Sediment	MRRNAPLLLLVLLLLPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR
Ga0247800_10901921	3300023263	Soil	MRPSALLLLLLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0207653_100497952	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR
Ga0207688_108586942	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ALLLILLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0207645_111069752	3300025907	Miscanthus Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0207643_105600102	3300025908	Miscanthus Rhizosphere	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKQGFVCTSFSDGSKRCGTGVGATTCRVR
Ga0207684_106989381	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRRRAALLMLLLVVLPWLGCSGGKECDRCSSDSDCKSGFVCTTFSDNSKRCGTGVGATTCRVR
Ga0207660_116944171	3300025917	Corn Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGV
Ga0207646_101641194	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGICNSFSDGSKRCGTGTGATTCRV
Ga0207644_102398782	3300025931	Switchgrass Rhizosphere	MRRSALLLILLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVG
Ga0207690_109488341	3300025932	Corn Rhizosphere	MRPSALLLLLLLVLPWLGCTKGQECDRCSSDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0207686_103534142	3300025934	Miscanthus Rhizosphere	MRRNALLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0207670_112568671	3300025936	Switchgrass Rhizosphere	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKSGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0207640_106934522	3300025981	Corn Rhizosphere	MRRSALLLLLLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0207648_117433531	3300026089	Miscanthus Rhizosphere	MRQNALLLLLLLVLPWLGCAKGQECDRCSSDDDCKSGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0209863_100743572	3300026281	Prmafrost Soil	MRRSALLLLVLLVLPWLGCAKGNECDVCSSDTDCKQGFICNGFSDGSKRCGTGVGATTCRVR
Ga0209647_10044384	3300026319	Grasslands Soil	MRRNALLLLMLLILPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR
Ga0209802_10362562	3300026328	Soil	MRRRAALLMLLLVVLPWLGCSGGKECDRCSSDSDCKSGFVCTSFSDGSKRCGTGVGATTCRVR
Ga0209807_10694212	3300026530	Soil	MRRYAALLLLVLLMLPIACAKGQECDTCSADTDCKSPLICNGFSDGSKRCGTGTGATTCRVR
Ga0209887_10837561	3300027561	Groundwater Sand	MRSTRWVLALVLIVLPVLSCTKGDECDRCSTDQDCKGGLVCSEFSDQSKRC
Ga0209481_107145491	3300027880	Populus Rhizosphere	RNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0209590_100443602	3300027882	Vadose Zone Soil	MRRRAALLLLVLIVPWLGCSNGNECDRCSSDTDCKQGFLCTSFADGSKRCGSGVGVTTCRVR
Ga0209382_100132805	3300027909	Populus Rhizosphere	MRRNALLLLVLLILPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0209853_10204433	3300027961	Groundwater Sand	MRSTRWVLALVLIVLPVLSCTKGDECDRCSTDQDCKGGLVCSEFSDQSKRCGTGEGATTCRVR
Ga0307296_103724382	3300028819	Soil	MRRNALLLLVLLVLPWLGCAKGQECDVCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0307310_102916961	3300028824	Soil	MRRNASLLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0307312_106997172	3300028828	Soil	MRRNASLLLLVLLVLPWLGCAKGQECDRCSSDDDCKQGFICNSFSDGSKRCGTGTGATTCRVR
Ga0307498_100683441	3300031170	Soil	LLLVLLVLPWLGCAKGQECDVCSSDDDCKSGFVCNSFSDGSKRCGTGVGATTCRVR
Ga0307500_101323292	3300031198	Soil	NPGRSVAMRRSALLLLLLLVLPWLGCTKGQECDQCSSDGDCKSGFVCTSFSDGSKRCGTGVGATTCRVR
Ga0307497_102928772	3300031226	Soil	MRRSALFLLLLLVLPWLGCTKGQECDQCSSDGDCKSGFVCTSFSDGSKRCGTGVGATTCRVR
Ga0326597_100193162	3300031965	Soil	MFRRRWLLYLVLAVMPLAGCTKGDECDRCSSDEDCRDGFFCTSFSDGSQRCGSGQGATTCRVR
Ga0310903_102317082	3300032000	Soil	MRRSALLLILLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGAT
Ga0310906_107659501	3300032013	Soil	MRPSALLLLLLLVLPWLGCAKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0307471_1011508231	3300032180	Hardwood Forest Soil	MRPGALLLLLLLVLPWLGCTKGQECDRCSTDDDCKSGSVCTTFSDGSKRCGTGVGATTCRVR
Ga0214472_116444342	3300033407	Soil	MRRCASLMLLMLLALPWLGCTKGNECDRCESDDDCKQGFVCNSFSDDSKRCGSGIGATTCRVR
Ga0214472_116573601	3300033407	Soil	KRSRWLLLLCLAVLPLAGCTKGNECDRCEADEDCKEGFLCTSFSDGSKRCGSGLGATTCRVR
Ga0364945_0282250_81_269	3300034115	Sediment	MRRNALLLLMLLVLPWLGCAKGQECDRCEADEDCKEGFVCTSFSDGSKRCGTGLGATTCRVR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100019

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign