NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F100008

Metagenome Family F100008

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100008
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 51 residues
Representative Sequence VNKPMFDSTGSLIKDEGEKVLVEDKWIKVKPVDKEKYLKSKEFWRNRQ
Number of Associated Samples 82
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 63.11 %
% of genes near scaffold ends (potentially truncated) 22.33 %
% of genes from short scaffolds (< 2000 bps) 63.11 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (51.456 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(33.981 % of family members)
Environment Ontology (ENVO) Unclassified
(87.379 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.320 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 14.58%    β-sheet: 18.75%    Coil/Unstructured: 66.67%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF00959Phage_lysozyme 26.21
PF00924MS_channel 11.65
PF01521Fe-S_biosyn 1.94
PF03819MazG 1.94
PF05367Phage_endo_I 0.97
PF11753DUF3310 0.97
PF02867Ribonuc_red_lgC 0.97
PF02945Endonuclease_7 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0668Small-conductance mechanosensitive channelCell wall/membrane/envelope biogenesis [M] 11.65
COG3264Small-conductance mechanosensitive channel MscKCell wall/membrane/envelope biogenesis [M] 11.65
COG0316Fe-S cluster assembly iron-binding protein IscAPosttranslational modification, protein turnover, chaperones [O] 1.94
COG4841Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF familyFunction unknown [S] 1.94
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A51.46 %
All OrganismsrootAll Organisms48.54 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10017219All Organisms → Viruses → Predicted Viral3548Open in IMG/M
3300000115|DelMOSum2011_c10021070Not Available3092Open in IMG/M
3300000117|DelMOWin2010_c10136040Not Available833Open in IMG/M
3300001450|JGI24006J15134_10003462All Organisms → cellular organisms → Bacteria8463Open in IMG/M
3300001450|JGI24006J15134_10015060All Organisms → Viruses → Predicted Viral3676Open in IMG/M
3300002231|KVRMV2_100326300All Organisms → Viruses → Predicted Viral2057Open in IMG/M
3300002231|KVRMV2_100369606All Organisms → Viruses → Predicted Viral1462Open in IMG/M
3300002231|KVRMV2_100407264All Organisms → cellular organisms → Bacteria1370Open in IMG/M
3300002242|KVWGV2_10011318All Organisms → Viruses → Predicted Viral2498Open in IMG/M
3300002242|KVWGV2_10770416All Organisms → Viruses → Predicted Viral1075Open in IMG/M
3300002483|JGI25132J35274_1005032All Organisms → Viruses → Predicted Viral3346Open in IMG/M
3300002488|JGI25128J35275_1000518All Organisms → Viruses12039Open in IMG/M
3300004097|Ga0055584_100048765All Organisms → Viruses → Predicted Viral4175Open in IMG/M
3300005057|Ga0068511_1081606Not Available562Open in IMG/M
3300005239|Ga0073579_1068336All Organisms → Viruses → Predicted Viral1597Open in IMG/M
3300006029|Ga0075466_1078011All Organisms → cellular organisms → Bacteria → Proteobacteria927Open in IMG/M
3300006735|Ga0098038_1005193Not Available5315Open in IMG/M
3300006735|Ga0098038_1131590Not Available844Open in IMG/M
3300006735|Ga0098038_1134845Not Available831Open in IMG/M
3300006735|Ga0098038_1146009Not Available790Open in IMG/M
3300006735|Ga0098038_1160068Not Available745Open in IMG/M
3300006737|Ga0098037_1150753Not Available781Open in IMG/M
3300006737|Ga0098037_1153896Not Available770Open in IMG/M
3300006749|Ga0098042_1065482All Organisms → cellular organisms → Bacteria960Open in IMG/M
3300006752|Ga0098048_1038047All Organisms → Viruses → Predicted Viral1544Open in IMG/M
3300006789|Ga0098054_1164586Not Available816Open in IMG/M
3300006793|Ga0098055_1281456Not Available623Open in IMG/M
3300006803|Ga0075467_10348041All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium779Open in IMG/M
3300006810|Ga0070754_10053189All Organisms → Viruses → Predicted Viral2130Open in IMG/M
3300006916|Ga0070750_10000256Not Available29297Open in IMG/M
3300006919|Ga0070746_10535812Not Available509Open in IMG/M
3300006921|Ga0098060_1041688All Organisms → Viruses → Predicted Viral1374Open in IMG/M
3300006928|Ga0098041_1006144All Organisms → Viruses → Predicted Viral4104Open in IMG/M
3300007229|Ga0075468_10006450All Organisms → Viruses → Predicted Viral4780Open in IMG/M
3300007276|Ga0070747_1014708Not Available3263Open in IMG/M
3300007276|Ga0070747_1018189All Organisms → Viruses → Predicted Viral2884Open in IMG/M
3300007540|Ga0099847_1011941All Organisms → Viruses → Predicted Viral2867Open in IMG/M
3300007963|Ga0110931_1102463Not Available863Open in IMG/M
3300007963|Ga0110931_1126219Not Available770Open in IMG/M
3300008218|Ga0114904_1130719Not Available596Open in IMG/M
3300009071|Ga0115566_10002748Not Available14409Open in IMG/M
3300009435|Ga0115546_1284828Not Available564Open in IMG/M
3300009497|Ga0115569_10434355Not Available563Open in IMG/M
3300009605|Ga0114906_1228307Not Available614Open in IMG/M
3300010149|Ga0098049_1093651Not Available942Open in IMG/M
3300011013|Ga0114934_10526048Not Available522Open in IMG/M
3300012953|Ga0163179_12065275Not Available526Open in IMG/M
3300017697|Ga0180120_10139923All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300017708|Ga0181369_1035324All Organisms → Viruses → Predicted Viral1163Open in IMG/M
3300017709|Ga0181387_1069105Not Available710Open in IMG/M
3300017720|Ga0181383_1028217All Organisms → Viruses → Predicted Viral1513Open in IMG/M
3300017732|Ga0181415_1134678Not Available554Open in IMG/M
3300017738|Ga0181428_1137070Not Available573Open in IMG/M
3300017739|Ga0181433_1077172Not Available824Open in IMG/M
3300017745|Ga0181427_1133651Not Available603Open in IMG/M
3300017746|Ga0181389_1198281Not Available519Open in IMG/M
3300017764|Ga0181385_1095330Not Available912Open in IMG/M
3300017768|Ga0187220_1145642All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium716Open in IMG/M
3300017772|Ga0181430_1036625Not Available1554Open in IMG/M
3300017772|Ga0181430_1048217All Organisms → Viruses → Predicted Viral1326Open in IMG/M
3300017772|Ga0181430_1064472All Organisms → Viruses → Predicted Viral1121Open in IMG/M
3300017773|Ga0181386_1024672All Organisms → Viruses → Predicted Viral1995Open in IMG/M
3300020374|Ga0211477_10241726Not Available621Open in IMG/M
3300020421|Ga0211653_10323256Not Available668Open in IMG/M
3300020428|Ga0211521_10053622All Organisms → Viruses → Predicted Viral2072Open in IMG/M
3300020436|Ga0211708_10195768All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium811Open in IMG/M
3300020472|Ga0211579_10003981Not Available10839Open in IMG/M
3300021365|Ga0206123_10086023All Organisms → Viruses → Predicted Viral1529Open in IMG/M
3300021371|Ga0213863_10359504Not Available597Open in IMG/M
3300022065|Ga0212024_1018373All Organisms → Viruses → Predicted Viral1123Open in IMG/M
3300022072|Ga0196889_1001067All Organisms → cellular organisms → Bacteria7620Open in IMG/M
3300022074|Ga0224906_1078545All Organisms → cellular organisms → Bacteria → Proteobacteria1003Open in IMG/M
3300022164|Ga0212022_1007363All Organisms → Viruses → Predicted Viral1484Open in IMG/M
3300022178|Ga0196887_1000606Not Available16691Open in IMG/M
3300024344|Ga0209992_10061713All Organisms → cellular organisms → Bacteria1756Open in IMG/M
3300025083|Ga0208791_1018867All Organisms → Viruses → Predicted Viral1437Open in IMG/M
3300025085|Ga0208792_1022392All Organisms → Viruses → Predicted Viral1304Open in IMG/M
3300025086|Ga0208157_1015669All Organisms → Viruses → Predicted Viral2395Open in IMG/M
3300025086|Ga0208157_1093198Not Available734Open in IMG/M
3300025099|Ga0208669_1009475All Organisms → cellular organisms → Bacteria2769Open in IMG/M
3300025102|Ga0208666_1018246Not Available2262Open in IMG/M
3300025110|Ga0208158_1006800All Organisms → Viruses → Predicted Viral3239Open in IMG/M
3300025120|Ga0209535_1008720Not Available5877Open in IMG/M
3300025127|Ga0209348_1179586Not Available604Open in IMG/M
3300025132|Ga0209232_1000377Not Available27555Open in IMG/M
3300025132|Ga0209232_1098707All Organisms → cellular organisms → Bacteria → Proteobacteria988Open in IMG/M
3300025137|Ga0209336_10012444All Organisms → Viruses → Predicted Viral3296Open in IMG/M
3300025151|Ga0209645_1000382Not Available23410Open in IMG/M
3300025168|Ga0209337_1029861All Organisms → Viruses → Predicted Viral3038Open in IMG/M
3300025543|Ga0208303_1018264All Organisms → Viruses → Predicted Viral2028Open in IMG/M
3300025626|Ga0209716_1109366Not Available772Open in IMG/M
3300025645|Ga0208643_1001356Not Available13771Open in IMG/M
3300025652|Ga0208134_1087341Not Available889Open in IMG/M
3300025652|Ga0208134_1127288Not Available668Open in IMG/M
3300025853|Ga0208645_1064046All Organisms → Viruses → Predicted Viral1678Open in IMG/M
3300029448|Ga0183755_1003436Not Available7916Open in IMG/M
3300029448|Ga0183755_1030343All Organisms → Viruses → Predicted Viral1602Open in IMG/M
3300029787|Ga0183757_1001240Not Available11363Open in IMG/M
3300029787|Ga0183757_1001315Not Available10809Open in IMG/M
3300031774|Ga0315331_10024747All Organisms → Viruses → Predicted Viral4438Open in IMG/M
3300031774|Ga0315331_10246046All Organisms → Viruses → Predicted Viral1323Open in IMG/M
3300032011|Ga0315316_10007483Not Available8122Open in IMG/M
3300032011|Ga0315316_11104356Not Available641Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine33.98%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous17.48%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater13.59%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine8.74%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment4.85%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.88%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.88%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.91%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean1.94%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface1.94%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.97%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.97%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water0.97%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.97%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.97%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.97%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002242Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey matEnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005057Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2umEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008218Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6EnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009497Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503EnvironmentalOpen in IMG/M
3300009605Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017745Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 50 SPOT_SRF_2014-01-15EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300020374Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291766-ERR318618)EnvironmentalOpen in IMG/M
3300020421Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556005-ERR599007)EnvironmentalOpen in IMG/M
3300020428Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)EnvironmentalOpen in IMG/M
3300020436Marine microbial communities from Tara Oceans - TARA_B100000424 (ERX556009-ERR598984)EnvironmentalOpen in IMG/M
3300020472Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300024344Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025127Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300029787Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1001721933300000115MarineMTKPMFDSTGSLIEDKGEKVLVEDTWIKIKPVDKEKYLKNKEFWRNRQ*
DelMOSum2011_1002107023300000115MarineMTKPMFDSTGSLIEDKGEKVLVEDEWIKIKPVDKNKYLKSKEFWRNRQ*
DelMOWin2010_1013604053300000117MarineMSKPIFDSTGSLIEDEGEKILVEDKWVKVDLPKKETDINKYLKDKEFWRNRE*
JGI24006J15134_1000346253300001450MarineMSKPIFDSTGSLIEDVGEQVLLDDEWVKVNPPEKKVDINKYLKSKEFWRNRQ*
JGI24006J15134_10015060113300001450MarineMSKPIFDSTGSLIEDEGERILVEDKWVKVDPPKKETDINKYLKDKEFWRNRQ*
KVRMV2_10032630043300002231Marine SedimentVSKPMFDSTGSLIQDEGEKVLVEDKWIKIKEVDKEKYLKSKEFWRNRQ*
KVRMV2_10036960653300002231Marine SedimentSLIEDEGEKVLVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
KVRMV2_10040726413300002231Marine SedimentMKKPMFDSTGSLIEDEGEKILVEDKWIKVKPVDKEKYLKDKEFWRNRQ*
KVWGV2_1001131833300002242Marine SedimentVSKPMFDSTGSLIQDEGEKVLVEDKWIKVKPVDKEKYLKDKEFWRNRQ*
KVWGV2_1077041623300002242Marine SedimentMKKPMFDSTGSLIEDEGEKILVEDKWIKVKPVDKEKYLKSKEFWRNRQ*
JGI25132J35274_100503253300002483MarineVNKPKFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKLNSLQDRYLKNKEFWRNRQ*
JGI25128J35275_100051883300002488MarineVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKYLKDKEFWRNRQ*
Ga0055584_10004876543300004097Pelagic MarineVNKPMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKSKEFWRNRQ*
Ga0068511_108160623300005057Marine WaterVNKPMFDSTGSLIKDEGEKVLIEDDWVKVKPVDREKYVKTKEFWRNRQ*
Ga0073579_106833663300005239MarineMSKPIFDSTGSLIEDEGERILVEDKWVKVDPPKKETDINKYLKDKEFWRNRE*
Ga0075466_107801113300006029AqueousVNKPMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKE
Ga0098038_100519393300006735MarineMKKPMFDSTGSLIEDEGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0098038_113159023300006735MarineMQRRYLVNKPMFDSTGSLIQDEGEKVLIEDKWIKVKPVDKEKYLKSKEFWRNRQ*
Ga0098038_113484523300006735MarineVSKPMFDSTGSLIKDEGEKVLIEDDWIKVKPVDKEKLNSMQDRYLKNKEFWRNRQ*
Ga0098038_114600913300006735MarineTMSYYRNYYMQRSYLMTKPMFDSTGSLIEDKGEKVLVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0098038_116006833300006735MarineMTKPMFDSTGSLIEDKGEKILVEDKWIKVKPVDKEKYLKSKEFWRNRQ*
Ga0098037_115075323300006737MarineMKKPMFDSTESLIEDKGENVLVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0098037_115389613300006737MarineVNKPMFDSTGSLIQDEGEKVLIEDKWIKVKPVDKEKYLKSKEFWRNRQ*
Ga0098042_106548243300006749MarineIEDKGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0098048_103804743300006752MarineVNKPMFDSTGSLIKDEGEKVLIEDDWIKVKPVDKEKLNSMQDRYLKNKEFWRNRQ*
Ga0098054_116458633300006789MarineYMQRRYLVTKPKFDSTGSLIKDEGEKVLVEDEWIKVKPVDKEKLNSLQDRYLKNKEFWRNRQ*
Ga0098055_128145623300006793MarineMTKPMFDSTGSLIEDKGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0075467_1034804133300006803AqueousMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKSKEFWRNRQ*L
Ga0070754_1005318953300006810AqueousMSKPIFDSTGSLIEDVGEQVLLDDEWVKVKPPEKKIDINKYLKSKEFWRNRQ*
Ga0070750_10000256323300006916AqueousMFDSTGSLIEDKGEKVLVEDTWIKIKPVDKEKYLKNKEFWRNRQ*
Ga0070746_1053581223300006919AqueousIQDEGEKVLVEDKWIKVKPVDKEKYLKDKEFWRNRQ*
Ga0098060_104168833300006921MarineMFDSTGSLIKDEGEKVLIEDDWIKVKPVDKEKLNSMQDRYLKNKEFWRNRQ*
Ga0098041_100614493300006928MarineMGYYKYYYMQREYLMTKPMFDSTGSLIEDKGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0075468_1000645053300007229AqueousMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKSKEFWRNRQ*
Ga0070747_101470833300007276AqueousMFDSTGSLIEDKGEKVLVEDEWIKIKPVDKNKYLKSKEFWRNRQ*
Ga0070747_101818953300007276AqueousMVKELLMSKPIFDSTGSLIEDVGEQVLLDDEWVKVKPPEKKIDINKYLKSKEFWRNRQ*
Ga0099847_101194173300007540AqueousMGYYKYYYMQRRYLVNKPMFDSTGSLIQDEGEKVLVEDKWIKVKPVDKEKYLKDKEFWRNRQ*
Ga0110931_110246313300007963MarineYYYMQREYYMKKPMFDSTGSLIEDEGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0110931_112621913300007963MarineMGYYRRYYMQRRYLVNKPMFDSTGSLIQDEGEKVLIEDKWIKVKPVDKEKYLKSKEFWRNRQ*
Ga0114904_113071913300008218Deep OceanRRYVVSKPMFDSTGSLIQDEGEKVLVEDKWIKVKEVDKEKYLKSKEFWRNRQ*
Ga0115566_10002748103300009071Pelagic MarineMGYYRRYYMQRRYLVNKPMFDSTGSLIKDEGEKVLIEDNWIKIKPVDKEKYLKTKEFWKNRQ*
Ga0115546_128482833300009435Pelagic MarineMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKDKEFWRNRQ*
Ga0115569_1043435523300009497Pelagic MarineMFDSTGSLIKDEGEKVLIEDNWIKIKPVDKEKYLKTKEFWKNRQ*
Ga0114906_122830723300009605Deep OceanMGYYRRYYMQRRYLVNKPMFDSTGSLIQDEGEKVLVEDKWIKVKPVDKEKLNSMQDRYLKNKEFWRNRQ*
Ga0098049_109365143300010149MarineSTGSLIEDEGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ*
Ga0114934_1052604813300011013Deep SubsurfaceMGYYRRYYMQRRYVVSKPMFDSTGSLIQDEGEKVLVEDKWIKIKEVDKEKYLKSKEFWRNRQ*
Ga0163179_1206527513300012953SeawaterMFDSTGSLIQDEGEKVLVEDKWIKVKEVDKEKYLKSK
Ga0180120_1013992333300017697Freshwater To Marine Saline GradientMGYYKYYYMQRRYLVNKPMFDSTGSLIQDEGEKVLVEDKWIKVKPVDKEKYLKDKEFWRNRQXSVGKCFMGELIVLC
Ga0181369_103532433300017708MarineVNKPMFDSTGSLIQDEGEKVLIEDKWIKVKPEDKEEYLKSKEFWRNRQ
Ga0181387_106910533300017709SeawaterMQRRYLVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKLNSLQDRYLKNKEFWRNR
Ga0181383_102821753300017720SeawaterMQRRYLVTKPKFDSTGSLIKDEGEKVLVEDKWIKVKPVDKEKYLKSKEFWRNRQ
Ga0181415_113467833300017732SeawaterVNKPMFDSTGSLIKDEGEKVLVEDKWIKVKPVDKEKYLKSKEFWR
Ga0181428_113707023300017738SeawaterMKKPMFDSTESLIEDKGENVLVEDKWIKVKPVDKDKYLKSKEFWRNRQ
Ga0181433_107717223300017739SeawaterMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKYLKTKEFWKNRQ
Ga0181427_113365113300017745SeawaterYYMKKPMFDSTESLIEDKGENVLVEDKWIKVKPVDKDKYLKSKEFWRNRQ
Ga0181389_119828133300017746SeawaterTGSLIQDEGEKVLVEDKWIKVKPVDKEKYLKDKEFWRNRQ
Ga0181385_109533023300017764SeawaterMKKPMFDSTESLIEDKGENVLVEDKWIKVKPIDKDKYLKSKEFWRNRQ
Ga0187220_114564213300017768SeawaterVTKPKFDSTGSLIKDEGEKVLVEDKWIKVKPVDKEKYLKS
Ga0181430_103662513300017772SeawaterRRYLVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKYLKTKEFWKNRQ
Ga0181430_104821713300017772SeawaterRRYLVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKLNSLQDRYLKNKEFWRNRQ
Ga0181430_106447213300017772SeawaterVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEK
Ga0181386_102467233300017773SeawaterMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKLNSLQDRYLKNKEFWRNRQ
Ga0211477_1024172623300020374MarineMFDSTGSLIQDEGEKVLVEDKWIKIKEVDKEKYLKSKEFWRNRQ
Ga0211653_1032325633300020421MarineMQRRYLVNKPMFDSTGSLIKDEGEKVLIEDDWIKVKPVDKEKLNSMQDRYLKNKEFWRNR
Ga0211521_1005362253300020428MarineMQRRYLVSKPMFDSTGSLIQDEGEKVLVEDKWIKVKPVDKEKLNSMQDRYLKNKEFWRNR
Ga0211708_1019576823300020436MarineMSKPMFDSTGSLIDDEGEKILVEDKWIKVKPVKKEKYVKSIEFWRDRQ
Ga0211579_1000398193300020472MarineVTKPKFDSTGSLIKDEGEKVLVEDEWIKVKPVDKEKLNSMQDRYLKTKEFWRNRQ
Ga0206123_1008602343300021365SeawaterVNKPMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKSKEFWRNRQ
Ga0213863_1035950443300021371SeawaterRRYLVNKPMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKSKEFWRNRQ
Ga0212024_101837333300022065AqueousMTKPMFDSTGSLIEDKGEKVLVEDTWIKIKPVDKEKYLKNKEFWRNRQ
Ga0196889_100106763300022072AqueousMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKSKEFWRNRQ
Ga0224906_107854513300022074SeawaterVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKYLKTKEFWKNRQ
Ga0212022_100736363300022164AqueousKPMFDSTGSLIQDEGEKVLIEDEWIKVKPVDKEKYLKSKEFWRNRQ
Ga0196887_1000606303300022178AqueousMFDSTGSLIEDKGEKVLVEDTWIKIKPVDKEKYLKNKEFWRNRQ
Ga0209992_1006171313300024344Deep SubsurfaceGEKVLVEDKWIKVKPVDKEKLNSMQDRYLKNKEFWRNRQ
Ga0208791_101886743300025083MarineVNKPMFDSTGSLIQDEGEKVLIEDKWIKVKPVDKEKYLKSKEFWRNRQ
Ga0208792_102239233300025085MarineMFDSTGSLIKDEGEKVLIEDDWIKVKPVDKEKLNSMQDRYLKNKEFWRNRQ
Ga0208157_101566943300025086MarineMQRRYLVNKPMFDSTGSLIQDEGEKVLIEDKWIKVKPVDKEKYLKSKEFWRNRQ
Ga0208157_109319833300025086MarineVSKPMFDSTGSLIKDEGEKVLIEDDWIKVKPVDKEKLNSMQDRYLKNKEFWRNRQ
Ga0208669_100947523300025099MarineMKKPMFDSTGSLIEDEGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ
Ga0208666_101824693300025102MarineMTKPMFDSTGSLIEDKGEKILVEDKWIKVKPVDKEKYLKSKEFWRNRQ
Ga0208158_100680043300025110MarineMGYYKYYYMQREYLMTKPMFDSTGSLIEDKGEKILVEDKWIKVKPVDKDKYLKSKEFWRNRQ
Ga0209535_100872043300025120MarineMSKPIFDSTGSLIEDEGERILVEDKWVKVDPPKKETDINKYLKDKEFWRNRQ
Ga0209348_117958633300025127MarineVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKYLKDKEF
Ga0209232_1000377193300025132MarineMQRRYLVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKYLKDKEFWRNRQ
Ga0209232_109870723300025132MarineVTKPKFDSTGSLIKDEGEKVLVEDEWIKVKPVDKEKLNSLQDRYLKNKEFWRNRQ
Ga0209336_1001244473300025137MarineMSKPIFDSTGSLIEDVGEQVLLDDEWVKVNPPEKKVDINKYLKSKEFWRNRQ
Ga0209645_1000382113300025151MarineVNKPKFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKLNSLQDRYLKNKEFWRNRQ
Ga0209337_102986113300025168MarineRRYLMSKPIFDSTGSLIEDEGERILVEDKWVKVDPPKKETDINKYLKDKEFWRNRQ
Ga0208303_101826453300025543AqueousVNKPMFDSTGSLIQDEGEKVLVEDKWIKVKPVDKEKYLKDKEFWRNRQ
Ga0209716_110936623300025626Pelagic MarineMQRRYLVNKPMFDSTGSLIKDEGEKVLIEDNWIKIKPVDKEKYLKTKEFWKNRQ
Ga0208643_1001356123300025645AqueousMTKPMFDSTGSLIEDKGEKVLVEDEWIKIKPVDKEKYLKNKEFWRNRQ
Ga0208134_108734123300025652AqueousMSKPIFDSTGSLIEDVGEQVLLDDEWVKVKPPEKKIDINKYLKSKEFWRNRQXLVEKYFMGELIISW
Ga0208134_112728833300025652AqueousMTKPMFDSTGSLIEDKGEKVLVEDEWIKIKPVDKNKYLKSKEFWRNRQXLVGKYFMGELVLQX
Ga0208645_106404653300025853AqueousMSKPIFDSTGSLIEDVGEQVLLDDEWVKVKPPEKKIDINKYLKSKEFWRNRQ
Ga0183755_100343613300029448MarineMTKPMFDSTGSLIEDKGEKVLVEDKWIKIKPVDKEKYLKSKEFWRNRQ
Ga0183755_103034333300029448MarineMQRRYLVSKPMFDSTGSLIQDEGEKVLVEDKWIKVKEIDKEKYLKTKEFWRNRQ
Ga0183757_100124093300029787MarineMKKPMFDSTGSLIEDEGEKILVEDKWIKVKPVDKEKYLKSKEFWRNRQ
Ga0183757_100131553300029787MarineMQRRYVVSKPMFDSTGSLIQDEGEKVLVEDKWIKVKEVDKEKYLKSKEFWRNRQ
Ga0315331_1002474753300031774SeawaterMQRRYLVNKPMFDSTGSLIKDEGEKVLVEDKWIKVKPVDKEKYLKSKEFWRNRQ
Ga0315331_1024604653300031774SeawaterMQRRYLVTKPKFDSTGSLIKDEGEKVLVEDEWIKVKPVDKEKLNSMQDRYLKTKEFWRNR
Ga0315316_1000748363300032011SeawaterVNKPMFDSTGSLIKDEGEKVLVEDKWIKVKPVDKEKYLKSKEFWRNRQ
Ga0315316_1110435623300032011SeawaterVNKPMFDSTGSLIKDEGEKVLIEDNWIKVKPVDKEKLNSLQDRYLKNKEFWRNRQ


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