NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099999

Metagenome Family F099999

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099999
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 47 residues
Representative Sequence MPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE
Number of Associated Samples 73
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.88 %
% of genes near scaffold ends (potentially truncated) 71.84 %
% of genes from short scaffolds (< 2000 bps) 68.93 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (44.660 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(53.398 % of family members)
Environment Ontology (ENVO) Unclassified
(90.291 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.204 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.
1DelMOSum2010_100908774
2DelMOSpr2010_101088211
3SI36aug09_100mDRAFT_10298753
4JGI24006J15134_100332452
5JGI26382J51730_10051937
6Ga0075461_101737213
7Ga0098038_100369111
8Ga0098038_10161035
9Ga0098038_11785603
10Ga0098037_10276671
11Ga0098037_10468495
12Ga0098037_10520345
13Ga0098037_11870811
14Ga0098037_12214831
15Ga0098037_12305341
16Ga0098037_13053861
17Ga0098042_10058005
18Ga0098042_10071235
19Ga0098042_10330663
20Ga0098054_10039032
21Ga0098054_10192012
22Ga0098055_12701261
23Ga0098055_13042931
24Ga0098060_10180593
25Ga0098060_11497353
26Ga0098045_10061153
27Ga0098036_10328726
28Ga0098036_11442023
29Ga0099851_10574784
30Ga0075480_104560131
31Ga0102957_11111431
32Ga0115545_12999161
33Ga0115546_12491821
34Ga0115546_12580471
35Ga0115563_12289953
36Ga0115557_101766810
37Ga0115012_121047541
38Ga0098059_13054301
39Ga0098059_13452341
40Ga0129324_103388093
41Ga0129324_103624961
42Ga0114934_1001106012
43Ga0114922_103256381
44Ga0151675_10001582
45Ga0160423_110376862
46Ga0181377_10609101
47Ga0181377_10878561
48Ga0181377_10937082
49Ga0181403_10038456
50Ga0181412_10307252
51Ga0181383_10257251
52Ga0181419_10325174
53Ga0181415_10023776
54Ga0181433_10071621
55Ga0181382_11889732
56Ga0181409_12022971
57Ga0181414_10154247
58Ga0187221_12069161
59Ga0181553_104872131
60Ga0211528_101717121
61Ga0213860_100894471
62Ga0222715_101341671
63Ga0222646_1296061
64Ga0222688_10363001
65Ga0255042_103481082
66Ga0208667_100256710
67Ga0207896_100092912
68Ga0207890_100209911
69Ga0208434_100562810
70Ga0208669_10128964
71Ga0208159_100350310
72Ga0208159_100369411
73Ga0208159_10722663
74Ga0208159_10968212
75Ga0208666_10056376
76Ga0208793_101104310
77Ga0208158_10315034
78Ga0208158_10630891
79Ga0208158_10698951
80Ga0208158_11003703
81Ga0208158_11350222
82Ga0209349_10740633
83Ga0209535_10248305
84Ga0209348_100073122
85Ga0209348_10341993
86Ga0208919_11461313
87Ga0209232_10174255
88Ga0209645_10613824
89Ga0209645_11095711
90Ga0209645_11669001
91Ga0209645_11810683
92Ga0208814_11217743
93Ga0209194_10330081
94Ga0208134_10529711
95Ga0209360_10063375
96Ga0208543_11237993
97Ga0209193_10343105
98Ga0209631_103515211
99Ga0185543_10109503
100Ga0183755_100305317
101Ga0135217_1162872
102Ga0183826_10596622
103Ga0308008_10410213
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.00%    β-sheet: 10.53%    Coil/Unstructured: 64.47%
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Variant

51015202530354045MPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDESequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
unclassified Hyphomonas
Unclassified
45.6%15.5%38.8%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Surface Seawater
Deep Subsurface
Marine
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Marine
Salt Marsh
Marine
Marine
Estuarine Water
Pelagic Marine
Pelagic Marine
Marine
Seawater
Marine Harbor
Deep Subsurface
Saline Water
Pond Water
53.4%4.9%2.9%3.9%6.8%10.7%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1009087743300000101MarineTLQQLKKASWSEWLNVFNQVHNSTITTSIGKIKVEIDD*
DelMOSpr2010_1010882113300000116MarineQTRSMATTPKRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD*
SI36aug09_100mDRAFT_102987533300000238MarineQLKKASWTEWLDAFNQVHNSTITTSIGKIKVEIDD*
JGI24006J15134_1003324523300001450MarineMPKRLKLSPKTLQSLNKASWSEWLDVFNQVHNSTMFTSVGTIKVVIDE*
JGI26382J51730_100519373300003601MarineMPKRLKLSPKTLQQLKKASWTEWLDAFNQVHNSTITTSIGKIKVEIDD*
Ga0075461_1017372133300006637AqueousGTLKKLQKASWSDWLDAFNQVHNSTMVTSVGKIKVEIDE*
Ga0098038_1003691113300006735MarineMPRRLKFSPKTLQQLKKASWSEWLDVFNQVHNSTITTYVGKIKVEIDE*
Ga0098038_101610353300006735MarineMPKRLRLSPKTLQQLKKASWADWLDAFNQVHNSTITTSVGKIKVMIDD*
Ga0098038_117856033300006735MarineLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098037_102766713300006737MarineKTLQQLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098037_104684953300006737MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIK
Ga0098037_105203453300006737MarinePKTLQQLKRASWSEWLDVFNQVHNSTITTSVGKIKVKIDD*
Ga0098037_118708113300006737MarineRNYQTRSMATMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0098037_122148313300006737MarineMGTMPKRLKLSPKTLQQLKKASWKDWLDAFNQVHNSTITTHIGKIKVEIDE*
Ga0098037_123053413300006737MarineSPKTLQQLKKASWSEWLDAFNQVHNSTIVTHVGTIKVEIDE*
Ga0098037_130538613300006737MarineRLRLSPKTLQQLKKASWKDWLDVFNQVHNSTITTHIGKIKVEIDE*
Ga0098042_100580053300006749MarineMPKRLKLSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKIEIDE*
Ga0098042_100712353300006749MarineMPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTQVGKIKVEIDE*
Ga0098042_103306633300006749MarineMPKQLKLSQKTLQKLNKASWSDWLDAFNQVHNSTITTQIGTIKIEIDE*
Ga0098054_100390323300006789MarineMPRRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIKVEIDD*
Ga0098054_101920123300006789MarineMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0098055_127012613300006793MarineKNYRTKSMAITPKRLKLSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKIEIDE*
Ga0098055_130429313300006793MarineIRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN*
Ga0098060_101805933300006921MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVMIDD*
Ga0098060_114973533300006921MarineLQQLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098045_100611533300006922MarineMPKRSKLSPKTLQQLKRASWSEWLDVFNQVHNSTITTSVGKIKVKIDD*
Ga0098036_103287263300006929MarineKLSPKTLQQLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098036_114420233300006929MarineASWSDWLDVFNQVHNSTIITSVGKIKVIIDEQED*
Ga0099851_105747843300007538AqueousQLKLSQGTLKKLQKASWSDWLDAFNQVHNSTMVTSVGKIKVEIDE*
Ga0075480_1045601313300008012AqueousRFKLSPKTLRQLKKASWSDWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0102957_111114313300009027Pond WaterQKTLKKLQKASWSVWLDAFNQVHNSTLTTSVGLIKVEIDE*
Ga0115545_129991613300009433Pelagic MarineKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKIVIDD*
Ga0115546_124918213300009435Pelagic MarineTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVEIDD*
Ga0115546_125804713300009435Pelagic MarineLKKASWSEWLDVFNQVHNSTITTSVGNIKVVIDE*
Ga0115563_122899533300009442Pelagic MarineTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD*
Ga0115557_1017668103300009443Pelagic MarineLSPKTLQKLSKAKWSDWLNVFNQVHNSGITTSVGTIKIDIDD*
Ga0115012_1210475413300009790MarineKRSKLSPKTLQQLNKASWSEWINVFNQVHNSTIFTAVGKIKVEIDD*
Ga0098059_130543013300010153MarinePKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE*
Ga0098059_134523413300010153MarineLMDTTPRQLKLSQKTLKQLRTAKWSDWLDAFNQVHNSGITTSVGKIKVEIDE*
Ga0129324_1033880933300010368Freshwater To Marine Saline GradientLRLNPKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0129324_1036249613300010368Freshwater To Marine Saline GradientLRLNPKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVEIDD*
Ga0114934_10011060123300011013Deep SubsurfaceLSQKTLQQLKKASWSDWLDAFNQVHNSTIFTSVGKIKVEIDD*
Ga0114922_1032563813300011118Deep SubsurfaceRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD*
Ga0151675_100015823300011254MarineMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE*
Ga0160423_1103768623300012920Surface SeawaterHQLKEASWSEWLDVFNQVHNSTMFTQVGKIKVEIDE*
Ga0181377_106091013300017706MarineSLRNYQTKSMGTTPKRLRLSPKTLQKLNKASWSDWLDVFNQVHNSTLTTSVGKIKVEIDD
Ga0181377_108785613300017706MarinePKTLQQLKKASWSEWLNVFNQVHNSTITTSIGKIKVEIDD
Ga0181377_109370823300017706MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE
Ga0181403_100384563300017710SeawaterMPKRLRLSPKTLQQLKKASWSDWLDAFNQVHNSTITVSVGKIKVTIDE
Ga0181412_103072523300017714SeawaterMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0181383_102572513300017720SeawaterQLKKASWADWLDAFNQVHNSTITTSVGKIKVMIDD
Ga0181419_103251743300017728SeawaterPKTLQQLKKASWSEWLNVFNQVHNSTIITSIGKIKVEIDD
Ga0181415_100237763300017732SeawaterMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIKVEIDD
Ga0181433_100716213300017739SeawaterQTKSMATTPKRLRLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0181382_118897323300017756SeawaterTPRQLKLSQKTLKQLRTAKWSDWLDAFNQVHNSGITTSVGKIKVEIDE
Ga0181409_120229713300017758SeawaterYRNYQTKSMASMPRRLKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIKVEIDD
Ga0181414_101542473300017759SeawaterMPKRLRLSPKTLQQLKKASWSEWLNVFNQVHNSTIITSIGKIKVEIDD
Ga0187221_120691613300017769SeawaterNYPTRLMATTPRQLKLSQKTLKQLRTAKWSDWLDAFNQVHNSGITTSVGKIKVEIDE
Ga0181553_1048721313300018416Salt MarshLKLSQKTLQKLSKASWSDWLDVFNQVHNSTITTHVGKIKVEIDE
Ga0211528_1017171213300020417MarineSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKVEIDE
Ga0213860_1008944713300021368SeawaterLKLSQGTLKKLQKASWSDWLDAFNQVHNSTMVTSVGKIKIEIDE
Ga0222715_1013416713300021960Estuarine WaterLKKLQRASWSDWLDAFNQVHNSTMVTSVGKIKVEIDE
Ga0222646_12960613300022822Saline WaterSMATTPRRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTLTTSIGTIKVKIDD
Ga0222688_103630013300023293Saline WaterLKKNWKNCPSKSMATTPRRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTLTTSIGTIKVKIDD
(restricted) Ga0255042_1034810823300024340SeawaterSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGTIKVEIDD
Ga0208667_1002567103300025070MarineMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0207896_1000929123300025071MarineMPKRSKLSPKTLQQLKRASWSEWLDVFNQVHNSTITTSVGKIKVKIDD
Ga0207890_1002099113300025079MarineLQSLKKASWSEWLDVFNQVHNSTITTSVGKIKVKIDD
Ga0208434_1005628103300025098MarineNYQIRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN
Ga0208669_101289643300025099MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVMIDD
Ga0208159_1003503103300025101MarineMPKQLKLSQKTLQKLNKASWSDWLDAFNQVHNSTITTQIGTIKIEIDE
Ga0208159_1003694113300025101MarineMPKRLKLSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKIEIDE
Ga0208159_107226633300025101MarineYRIKSMATMPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTQVGKIKVEIDE
Ga0208159_109682123300025101MarineQTRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE
Ga0208666_100563763300025102MarineMPRRLKFSPKTLQQLKKASWSEWLDVFNQVHNSTITTYVGKIKVEIDE
Ga0208793_1011043103300025108MarineLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0208158_103150343300025110MarineRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVMIDD
Ga0208158_106308913300025110MarineATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0208158_106989513300025110MarineATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN
Ga0208158_110037033300025110MarineRLKFSPKTLQQLKKASWSEWLDVFNQVHNSTITTYVGKIKVEIDE
Ga0208158_113502223300025110MarineSNLKKSLRNYQTRSMATMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0209349_107406333300025112MarineSKLSPQTLKKLKTVSWSEWIKVFNSVHNSTMFTSVGTVKVDIDET
Ga0209535_102483053300025120MarineMPKRLKLSPKTLQSLNKASWSEWLDVFNQVHNSTMFTSVGTIKVVIDE
Ga0209348_1000731223300025127MarineMPKRLKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0209348_103419933300025127MarineMPRRLRLSPKTLQQLKKASWADWLDAFNQVHNSTITTSVGKIKVMIDD
Ga0208919_114613133300025128MarineIRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN
Ga0209232_101742553300025132MarineMPKRLKLSQSTLNKLKRASWSEWLKAFNLVHNSTMFTSVGSIVIKINEKKN
Ga0209645_106138243300025151MarineWKSYRIRSMATTPKRLKLSQKTLHQLKEASWSEWLDVFNQVHNSTMFTQVGKIKVEIDE
Ga0209645_110957113300025151MarineSYRIRSMATTPKQLKLSQKTLHQLKEASWSEWLDVFNQVHNSTMFTHVGKIKVEIDE
Ga0209645_116690013300025151MarineWKSYRIRSMATTPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTHVGKIKVEIDE
Ga0209645_118106833300025151MarineTLQQLKKASWSEWLNVFNQVHNSTIVTRIGTIKVEIDE
Ga0208814_112177433300025276Deep OceanLSPKTLQLLKKASWSEWLDVFNQVHNPTITTSVGTIEVIIDEEEN
Ga0209194_103300813300025632Pelagic MarineQRLKKASWSEWLDVFNQVHNSTITTSVGNIKVVIDE
Ga0208134_105297113300025652AqueousQLKKASWSEWLDVFNQVHNSTITTSVGKIKVKIDD
Ga0209360_100633753300025665MarineMPKRLKLSPKTLQQLKKASWTEWLDAFNQVHNSTITTSIGKIKVEIDD
Ga0208543_112379933300025810AqueousRLRLNPKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0209193_103431053300025816Pelagic MarineNYQTRSMAITPKRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD
Ga0209631_1035152113300025890Pelagic MarineYQTRSMATTPKRLKLSPKTLQKLSKAKWSDWLNVFNQVHNSGITTSVGTIKIDIDD
Ga0185543_101095033300029318MarineMPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTQVGKIKVEIDE
Ga0183755_1003053173300029448MarineMPRQLKLSQKTLNQLKTANWTDWLNAFNQVHNSTIVTEIGKIKVEIDGTEET
Ga0135217_11628723300029635Marine HarborVSQSRSARATTPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTHVGKIKVEIDE
Ga0183826_105966223300029792MarineMPKRLKLSQSTLNKLKKANWSEWVKVFNQVHNSAMFTSVGVINIKIDEEKDKHTKKNKKR
Ga0308008_104102133300031687MarineSNLKKSLRNFQQKSMATTPKRFKLSPKTLQRLKKASWSEWLDAFNQIHNPTITTSVGTIEVIIDEEEN


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