NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099999

Metagenome Family F099999

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099999
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 47 residues
Representative Sequence MPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE
Number of Associated Samples 73
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.88 %
% of genes near scaffold ends (potentially truncated) 71.84 %
% of genes from short scaffolds (< 2000 bps) 68.93 %
Associated GOLD sequencing projects 65
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (44.660 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(53.398 % of family members)
Environment Ontology (ENVO) Unclassified
(90.291 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(93.204 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.00%    β-sheet: 10.53%    Coil/Unstructured: 64.47%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF03592Terminase_2 22.33
PF01870Hjc 4.85
PF03237Terminase_6N 2.91
PF10077DUF2314 0.97
PF08774VRR_NUC 0.97
PF136402OG-FeII_Oxy_3 0.97
PF00476DNA_pol_A 0.97
PF13361UvrD_C 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 22.33
COG1591Holliday junction resolvase Hjc, archaeal typeReplication, recombination and repair [L] 4.85
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms45.63 %
UnclassifiedrootN/A38.83 %
unclassified Hyphomonasno rankunclassified Hyphomonas15.53 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10090877Not Available1307Open in IMG/M
3300000116|DelMOSpr2010_c10108821Not Available1026Open in IMG/M
3300000238|SI36aug09_100mDRAFT_1029875Not Available665Open in IMG/M
3300001450|JGI24006J15134_10033245unclassified Hyphomonas → Hyphomonas sp.2241Open in IMG/M
3300003601|JGI26382J51730_1005193unclassified Hyphomonas → Hyphomonas sp.4404Open in IMG/M
3300006637|Ga0075461_10173721All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300006735|Ga0098038_1003691All Organisms → cellular organisms → Bacteria6377Open in IMG/M
3300006735|Ga0098038_1016103All Organisms → cellular organisms → Bacteria2885Open in IMG/M
3300006735|Ga0098038_1178560All Organisms → cellular organisms → Bacteria696Open in IMG/M
3300006737|Ga0098037_1027667All Organisms → cellular organisms → Bacteria2098Open in IMG/M
3300006737|Ga0098037_1046849unclassified Hyphomonas → Hyphomonas sp.1563Open in IMG/M
3300006737|Ga0098037_1052034Not Available1473Open in IMG/M
3300006737|Ga0098037_1187081Not Available682Open in IMG/M
3300006737|Ga0098037_1221483All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300006737|Ga0098037_1230534All Organisms → cellular organisms → Bacteria598Open in IMG/M
3300006737|Ga0098037_1305386All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300006749|Ga0098042_1005800All Organisms → cellular organisms → Bacteria4150Open in IMG/M
3300006749|Ga0098042_1007123unclassified Hyphomonas → Hyphomonas sp.3670Open in IMG/M
3300006749|Ga0098042_1033066All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300006789|Ga0098054_1003903All Organisms → cellular organisms → Bacteria6696Open in IMG/M
3300006789|Ga0098054_1019201unclassified Hyphomonas → Hyphomonas sp.2731Open in IMG/M
3300006793|Ga0098055_1270126All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300006793|Ga0098055_1304293Not Available595Open in IMG/M
3300006921|Ga0098060_1018059unclassified Hyphomonas → Hyphomonas sp.2216Open in IMG/M
3300006921|Ga0098060_1149735All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300006922|Ga0098045_1006115unclassified Hyphomonas → Hyphomonas sp.3618Open in IMG/M
3300006929|Ga0098036_1032872All Organisms → cellular organisms → Bacteria1626Open in IMG/M
3300006929|Ga0098036_1144202Not Available728Open in IMG/M
3300007538|Ga0099851_1057478All Organisms → cellular organisms → Bacteria1521Open in IMG/M
3300008012|Ga0075480_10456013Not Available621Open in IMG/M
3300009027|Ga0102957_1111143All Organisms → cellular organisms → Bacteria959Open in IMG/M
3300009433|Ga0115545_1299916Not Available534Open in IMG/M
3300009435|Ga0115546_1249182Not Available609Open in IMG/M
3300009435|Ga0115546_1258047Not Available597Open in IMG/M
3300009442|Ga0115563_1228995Not Available701Open in IMG/M
3300009443|Ga0115557_1017668All Organisms → cellular organisms → Bacteria3677Open in IMG/M
3300009790|Ga0115012_12104754All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300010153|Ga0098059_1305430unclassified Hyphomonas → Hyphomonas sp.607Open in IMG/M
3300010153|Ga0098059_1345234Not Available565Open in IMG/M
3300010368|Ga0129324_10338809Not Available587Open in IMG/M
3300010368|Ga0129324_10362496Not Available563Open in IMG/M
3300011013|Ga0114934_10011060All Organisms → cellular organisms → Bacteria5206Open in IMG/M
3300011118|Ga0114922_10325638Not Available1281Open in IMG/M
3300011254|Ga0151675_1000158unclassified Hyphomonas → Hyphomonas sp.1229Open in IMG/M
3300012920|Ga0160423_11037686Not Available549Open in IMG/M
3300017706|Ga0181377_1060910Not Available701Open in IMG/M
3300017706|Ga0181377_1087856Not Available547Open in IMG/M
3300017706|Ga0181377_1093708unclassified Hyphomonas → Hyphomonas sp.523Open in IMG/M
3300017710|Ga0181403_1003845unclassified Hyphomonas → Hyphomonas sp.3321Open in IMG/M
3300017714|Ga0181412_1030725Not Available1448Open in IMG/M
3300017720|Ga0181383_1025725All Organisms → cellular organisms → Bacteria1584Open in IMG/M
3300017728|Ga0181419_1032517Not Available1415Open in IMG/M
3300017732|Ga0181415_1002377unclassified Hyphomonas → Hyphomonas sp.4860Open in IMG/M
3300017739|Ga0181433_1007162Not Available3169Open in IMG/M
3300017756|Ga0181382_1188973Not Available524Open in IMG/M
3300017758|Ga0181409_1202297Not Available572Open in IMG/M
3300017759|Ga0181414_1015424unclassified Hyphomonas → Hyphomonas sp.2089Open in IMG/M
3300017769|Ga0187221_1206916Not Available564Open in IMG/M
3300018416|Ga0181553_10487213All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300020417|Ga0211528_10171712All Organisms → cellular organisms → Bacteria844Open in IMG/M
3300021368|Ga0213860_10089447All Organisms → cellular organisms → Bacteria1340Open in IMG/M
3300021960|Ga0222715_10134167All Organisms → cellular organisms → Bacteria1555Open in IMG/M
3300022822|Ga0222646_129606Not Available531Open in IMG/M
3300023293|Ga0222688_1036300Not Available565Open in IMG/M
(restricted) 3300024340|Ga0255042_10348108Not Available500Open in IMG/M
3300025070|Ga0208667_1002567All Organisms → cellular organisms → Bacteria5862Open in IMG/M
3300025071|Ga0207896_1000929All Organisms → cellular organisms → Bacteria5823Open in IMG/M
3300025079|Ga0207890_1002099All Organisms → cellular organisms → Bacteria5053Open in IMG/M
3300025098|Ga0208434_1005628All Organisms → cellular organisms → Bacteria3934Open in IMG/M
3300025099|Ga0208669_1012896unclassified Hyphomonas → Hyphomonas sp.2287Open in IMG/M
3300025101|Ga0208159_1003503All Organisms → cellular organisms → Bacteria5165Open in IMG/M
3300025101|Ga0208159_1003694All Organisms → cellular organisms → Bacteria4986Open in IMG/M
3300025101|Ga0208159_1072266All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300025101|Ga0208159_1096821Not Available531Open in IMG/M
3300025102|Ga0208666_1005637All Organisms → cellular organisms → Bacteria4703Open in IMG/M
3300025108|Ga0208793_1011043All Organisms → cellular organisms → Bacteria3538Open in IMG/M
3300025110|Ga0208158_1031503Not Available1352Open in IMG/M
3300025110|Ga0208158_1063089Not Available899Open in IMG/M
3300025110|Ga0208158_1069895Not Available845Open in IMG/M
3300025110|Ga0208158_1100370All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300025110|Ga0208158_1135022Not Available566Open in IMG/M
3300025112|Ga0209349_1074063Not Available1013Open in IMG/M
3300025120|Ga0209535_1024830All Organisms → Viruses → Predicted Viral2947Open in IMG/M
3300025127|Ga0209348_1000731All Organisms → cellular organisms → Bacteria16513Open in IMG/M
3300025127|Ga0209348_1034199All Organisms → cellular organisms → Bacteria1803Open in IMG/M
3300025128|Ga0208919_1146131Not Available735Open in IMG/M
3300025132|Ga0209232_1017425All Organisms → cellular organisms → Bacteria2857Open in IMG/M
3300025151|Ga0209645_1061382All Organisms → cellular organisms → Bacteria1290Open in IMG/M
3300025151|Ga0209645_1109571All Organisms → cellular organisms → Bacteria886Open in IMG/M
3300025151|Ga0209645_1166900All Organisms → cellular organisms → Bacteria669Open in IMG/M
3300025151|Ga0209645_1181068All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300025276|Ga0208814_1121774All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300025632|Ga0209194_1033008Not Available1616Open in IMG/M
3300025652|Ga0208134_1052971Not Available1278Open in IMG/M
3300025665|Ga0209360_1006337All Organisms → cellular organisms → Bacteria → Proteobacteria5628Open in IMG/M
3300025810|Ga0208543_1123799Not Available611Open in IMG/M
3300025816|Ga0209193_1034310Not Available1497Open in IMG/M
3300025890|Ga0209631_10351521Not Available696Open in IMG/M
3300029318|Ga0185543_1010950unclassified Hyphomonas → Hyphomonas sp.2241Open in IMG/M
3300029448|Ga0183755_1003053All Organisms → cellular organisms → Bacteria → Proteobacteria8542Open in IMG/M
3300029635|Ga0135217_116287All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300029792|Ga0183826_1059662unclassified Hyphomonas → Hyphomonas sp.581Open in IMG/M
3300031687|Ga0308008_1041021All Organisms → cellular organisms → Bacteria1124Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine53.40%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater10.68%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine6.80%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.85%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.88%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.91%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.94%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.94%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water1.94%
Deep OceanEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean0.97%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.97%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.97%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.97%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.97%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh0.97%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.97%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.97%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.97%
Marine HarborEnvironmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor0.97%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface0.97%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.97%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000238Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 36 08/11/09 100mEnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300003601Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_165m_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009027Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MGEnvironmentalOpen in IMG/M
3300009433Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300011254Seawater microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_1, 0.02EnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017732Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 38 SPOT_SRF_2012-12-11EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300021368Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO550EnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300022822Saline water microbial communities from Ace Lake, Antarctica - #293EnvironmentalOpen in IMG/M
3300023293Saline water microbial communities from Ace Lake, Antarctica - #1165EnvironmentalOpen in IMG/M
3300024340 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025079Marine viral communities from the Pacific Ocean - LP-48 (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025099Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025101Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025110Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025112Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025127Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025128Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025132Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025276Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)EnvironmentalOpen in IMG/M
3300025632Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025665Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_130m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300029318Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289EnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300029635Marine harbor viral communities from the Indian Ocean - SMH2EnvironmentalOpen in IMG/M
3300029792Marine giant viral communities collected during Tara Oceans survey from station TARA_041 - TARA_Y100000052EnvironmentalOpen in IMG/M
3300031687Marine microbial communities from water near the shore, Antarctic Ocean - #125EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1009087743300000101MarineTLQQLKKASWSEWLNVFNQVHNSTITTSIGKIKVEIDD*
DelMOSpr2010_1010882113300000116MarineQTRSMATTPKRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD*
SI36aug09_100mDRAFT_102987533300000238MarineQLKKASWTEWLDAFNQVHNSTITTSIGKIKVEIDD*
JGI24006J15134_1003324523300001450MarineMPKRLKLSPKTLQSLNKASWSEWLDVFNQVHNSTMFTSVGTIKVVIDE*
JGI26382J51730_100519373300003601MarineMPKRLKLSPKTLQQLKKASWTEWLDAFNQVHNSTITTSIGKIKVEIDD*
Ga0075461_1017372133300006637AqueousGTLKKLQKASWSDWLDAFNQVHNSTMVTSVGKIKVEIDE*
Ga0098038_1003691113300006735MarineMPRRLKFSPKTLQQLKKASWSEWLDVFNQVHNSTITTYVGKIKVEIDE*
Ga0098038_101610353300006735MarineMPKRLRLSPKTLQQLKKASWADWLDAFNQVHNSTITTSVGKIKVMIDD*
Ga0098038_117856033300006735MarineLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098037_102766713300006737MarineKTLQQLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098037_104684953300006737MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIK
Ga0098037_105203453300006737MarinePKTLQQLKRASWSEWLDVFNQVHNSTITTSVGKIKVKIDD*
Ga0098037_118708113300006737MarineRNYQTRSMATMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0098037_122148313300006737MarineMGTMPKRLKLSPKTLQQLKKASWKDWLDAFNQVHNSTITTHIGKIKVEIDE*
Ga0098037_123053413300006737MarineSPKTLQQLKKASWSEWLDAFNQVHNSTIVTHVGTIKVEIDE*
Ga0098037_130538613300006737MarineRLRLSPKTLQQLKKASWKDWLDVFNQVHNSTITTHIGKIKVEIDE*
Ga0098042_100580053300006749MarineMPKRLKLSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKIEIDE*
Ga0098042_100712353300006749MarineMPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTQVGKIKVEIDE*
Ga0098042_103306633300006749MarineMPKQLKLSQKTLQKLNKASWSDWLDAFNQVHNSTITTQIGTIKIEIDE*
Ga0098054_100390323300006789MarineMPRRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIKVEIDD*
Ga0098054_101920123300006789MarineMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0098055_127012613300006793MarineKNYRTKSMAITPKRLKLSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKIEIDE*
Ga0098055_130429313300006793MarineIRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN*
Ga0098060_101805933300006921MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVMIDD*
Ga0098060_114973533300006921MarineLQQLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098045_100611533300006922MarineMPKRSKLSPKTLQQLKRASWSEWLDVFNQVHNSTITTSVGKIKVKIDD*
Ga0098036_103287263300006929MarineKLSPKTLQQLKKASWSEWLDVFNQVHNSTIVTHVGTIKVEIDE*
Ga0098036_114420233300006929MarineASWSDWLDVFNQVHNSTIITSVGKIKVIIDEQED*
Ga0099851_105747843300007538AqueousQLKLSQGTLKKLQKASWSDWLDAFNQVHNSTMVTSVGKIKVEIDE*
Ga0075480_1045601313300008012AqueousRFKLSPKTLRQLKKASWSDWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0102957_111114313300009027Pond WaterQKTLKKLQKASWSVWLDAFNQVHNSTLTTSVGLIKVEIDE*
Ga0115545_129991613300009433Pelagic MarineKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKIVIDD*
Ga0115546_124918213300009435Pelagic MarineTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVEIDD*
Ga0115546_125804713300009435Pelagic MarineLKKASWSEWLDVFNQVHNSTITTSVGNIKVVIDE*
Ga0115563_122899533300009442Pelagic MarineTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD*
Ga0115557_1017668103300009443Pelagic MarineLSPKTLQKLSKAKWSDWLNVFNQVHNSGITTSVGTIKIDIDD*
Ga0115012_1210475413300009790MarineKRSKLSPKTLQQLNKASWSEWINVFNQVHNSTIFTAVGKIKVEIDD*
Ga0098059_130543013300010153MarinePKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE*
Ga0098059_134523413300010153MarineLMDTTPRQLKLSQKTLKQLRTAKWSDWLDAFNQVHNSGITTSVGKIKVEIDE*
Ga0129324_1033880933300010368Freshwater To Marine Saline GradientLRLNPKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVVIDD*
Ga0129324_1036249613300010368Freshwater To Marine Saline GradientLRLNPKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVEIDD*
Ga0114934_10011060123300011013Deep SubsurfaceLSQKTLQQLKKASWSDWLDAFNQVHNSTIFTSVGKIKVEIDD*
Ga0114922_1032563813300011118Deep SubsurfaceRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD*
Ga0151675_100015823300011254MarineMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE*
Ga0160423_1103768623300012920Surface SeawaterHQLKEASWSEWLDVFNQVHNSTMFTQVGKIKVEIDE*
Ga0181377_106091013300017706MarineSLRNYQTKSMGTTPKRLRLSPKTLQKLNKASWSDWLDVFNQVHNSTLTTSVGKIKVEIDD
Ga0181377_108785613300017706MarinePKTLQQLKKASWSEWLNVFNQVHNSTITTSIGKIKVEIDD
Ga0181377_109370823300017706MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE
Ga0181403_100384563300017710SeawaterMPKRLRLSPKTLQQLKKASWSDWLDAFNQVHNSTITVSVGKIKVTIDE
Ga0181412_103072523300017714SeawaterMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0181383_102572513300017720SeawaterQLKKASWADWLDAFNQVHNSTITTSVGKIKVMIDD
Ga0181419_103251743300017728SeawaterPKTLQQLKKASWSEWLNVFNQVHNSTIITSIGKIKVEIDD
Ga0181415_100237763300017732SeawaterMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIKVEIDD
Ga0181433_100716213300017739SeawaterQTKSMATTPKRLRLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0181382_118897323300017756SeawaterTPRQLKLSQKTLKQLRTAKWSDWLDAFNQVHNSGITTSVGKIKVEIDE
Ga0181409_120229713300017758SeawaterYRNYQTKSMASMPRRLKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSIGKIKVEIDD
Ga0181414_101542473300017759SeawaterMPKRLRLSPKTLQQLKKASWSEWLNVFNQVHNSTIITSIGKIKVEIDD
Ga0187221_120691613300017769SeawaterNYPTRLMATTPRQLKLSQKTLKQLRTAKWSDWLDAFNQVHNSGITTSVGKIKVEIDE
Ga0181553_1048721313300018416Salt MarshLKLSQKTLQKLSKASWSDWLDVFNQVHNSTITTHVGKIKVEIDE
Ga0211528_1017171213300020417MarineSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKVEIDE
Ga0213860_1008944713300021368SeawaterLKLSQGTLKKLQKASWSDWLDAFNQVHNSTMVTSVGKIKIEIDE
Ga0222715_1013416713300021960Estuarine WaterLKKLQRASWSDWLDAFNQVHNSTMVTSVGKIKVEIDE
Ga0222646_12960613300022822Saline WaterSMATTPRRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTLTTSIGTIKVKIDD
Ga0222688_103630013300023293Saline WaterLKKNWKNCPSKSMATTPRRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTLTTSIGTIKVKIDD
(restricted) Ga0255042_1034810823300024340SeawaterSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGTIKVEIDD
Ga0208667_1002567103300025070MarineMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0207896_1000929123300025071MarineMPKRSKLSPKTLQQLKRASWSEWLDVFNQVHNSTITTSVGKIKVKIDD
Ga0207890_1002099113300025079MarineLQSLKKASWSEWLDVFNQVHNSTITTSVGKIKVKIDD
Ga0208434_1005628103300025098MarineNYQIRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN
Ga0208669_101289643300025099MarineMPKRLRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVMIDD
Ga0208159_1003503103300025101MarineMPKQLKLSQKTLQKLNKASWSDWLDAFNQVHNSTITTQIGTIKIEIDE
Ga0208159_1003694113300025101MarineMPKRLKLSPKTLQQLKKASWSEWLNVFNQVHNSTIVTHVGTIKIEIDE
Ga0208159_107226633300025101MarineYRIKSMATMPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTQVGKIKVEIDE
Ga0208159_109682123300025101MarineQTRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDE
Ga0208666_100563763300025102MarineMPRRLKFSPKTLQQLKKASWSEWLDVFNQVHNSTITTYVGKIKVEIDE
Ga0208793_1011043103300025108MarineLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0208158_103150343300025110MarineRLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVMIDD
Ga0208158_106308913300025110MarineATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0208158_106989513300025110MarineATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN
Ga0208158_110037033300025110MarineRLKFSPKTLQQLKKASWSEWLDVFNQVHNSTITTYVGKIKVEIDE
Ga0208158_113502223300025110MarineSNLKKSLRNYQTRSMATMPKRSKLSPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0209349_107406333300025112MarineSKLSPQTLKKLKTVSWSEWIKVFNSVHNSTMFTSVGTVKVDIDET
Ga0209535_102483053300025120MarineMPKRLKLSPKTLQSLNKASWSEWLDVFNQVHNSTMFTSVGTIKVVIDE
Ga0209348_1000731223300025127MarineMPKRLKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0209348_103419933300025127MarineMPRRLRLSPKTLQQLKKASWADWLDAFNQVHNSTITTSVGKIKVMIDD
Ga0208919_114613133300025128MarineIRSMATTPKRSKLNPKTLQQLKKASWSEWLDVFNQVHNSTITTSVGKIKVVIDEQEN
Ga0209232_101742553300025132MarineMPKRLKLSQSTLNKLKRASWSEWLKAFNLVHNSTMFTSVGSIVIKINEKKN
Ga0209645_106138243300025151MarineWKSYRIRSMATTPKRLKLSQKTLHQLKEASWSEWLDVFNQVHNSTMFTQVGKIKVEIDE
Ga0209645_110957113300025151MarineSYRIRSMATTPKQLKLSQKTLHQLKEASWSEWLDVFNQVHNSTMFTHVGKIKVEIDE
Ga0209645_116690013300025151MarineWKSYRIRSMATTPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTHVGKIKVEIDE
Ga0209645_118106833300025151MarineTLQQLKKASWSEWLNVFNQVHNSTIVTRIGTIKVEIDE
Ga0208814_112177433300025276Deep OceanLSPKTLQLLKKASWSEWLDVFNQVHNPTITTSVGTIEVIIDEEEN
Ga0209194_103300813300025632Pelagic MarineQRLKKASWSEWLDVFNQVHNSTITTSVGNIKVVIDE
Ga0208134_105297113300025652AqueousQLKKASWSEWLDVFNQVHNSTITTSVGKIKVKIDD
Ga0209360_100633753300025665MarineMPKRLKLSPKTLQQLKKASWTEWLDAFNQVHNSTITTSIGKIKVEIDD
Ga0208543_112379933300025810AqueousRLRLNPKTLQQLKKVSWSEWLDVFNQVHNSTITTSVGKIKVVIDD
Ga0209193_103431053300025816Pelagic MarineNYQTRSMAITPKRLKLSPKTLQQLKKASWSEWLDAFNQVHNSTITTSIGKIKVEIDD
Ga0209631_1035152113300025890Pelagic MarineYQTRSMATTPKRLKLSPKTLQKLSKAKWSDWLNVFNQVHNSGITTSVGTIKIDIDD
Ga0185543_101095033300029318MarineMPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTQVGKIKVEIDE
Ga0183755_1003053173300029448MarineMPRQLKLSQKTLNQLKTANWTDWLNAFNQVHNSTIVTEIGKIKVEIDGTEET
Ga0135217_11628723300029635Marine HarborVSQSRSARATTPKRLKLSQKTLHQLKEASWSEWLDAFNQVHNSTMFTHVGKIKVEIDE
Ga0183826_105966223300029792MarineMPKRLKLSQSTLNKLKKANWSEWVKVFNQVHNSAMFTSVGVINIKIDEEKDKHTKKNKKR
Ga0308008_104102133300031687MarineSNLKKSLRNFQQKSMATTPKRFKLSPKTLQRLKKASWSEWLDAFNQIHNPTITTSVGTIEVIIDEEEN


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