NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099966

Metagenome / Metatranscriptome Family F099966

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099966
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 46 residues
Representative Sequence MIPRHLLIGVAALLVLVVAMGIYLRHMRRQAGELESPAADALPVAPP
Number of Associated Samples 90
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 88.00 %
% of genes near scaffold ends (potentially truncated) 95.15 %
% of genes from short scaffolds (< 2000 bps) 86.41 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (52.427 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(9.709 % of family members)
Environment Ontology (ENVO) Unclassified
(26.214 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.398 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 49.33%    β-sheet: 0.00%    Coil/Unstructured: 50.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF01520Amidase_3 75.73
PF06245DUF1015 3.88
PF13519VWA_2 1.94
PF14464Prok-JAB 0.97
PF05598DUF772 0.97
PF07885Ion_trans_2 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG0860N-acetylmuramoyl-L-alanine amidaseCell wall/membrane/envelope biogenesis [M] 75.73
COG4198Uncharacterized conserved protein, DUF1015 familyFunction unknown [S] 3.88


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A52.43 %
All OrganismsrootAll Organisms47.57 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001546|JGI12659J15293_10004598All Organisms → cellular organisms → Bacteria4073Open in IMG/M
3300001593|JGI12635J15846_10606562All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300002245|JGIcombinedJ26739_100366503All Organisms → cellular organisms → Bacteria1321Open in IMG/M
3300002245|JGIcombinedJ26739_100717314All Organisms → cellular organisms → Bacteria879Open in IMG/M
3300002245|JGIcombinedJ26739_101119896All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis675Open in IMG/M
3300002245|JGIcombinedJ26739_101306256Not Available617Open in IMG/M
3300002245|JGIcombinedJ26739_101320353Not Available613Open in IMG/M
3300004080|Ga0062385_10615792All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae688Open in IMG/M
3300004080|Ga0062385_11180013Not Available522Open in IMG/M
3300004082|Ga0062384_100084558All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1654Open in IMG/M
3300004092|Ga0062389_101398199Not Available884Open in IMG/M
3300004152|Ga0062386_101084424Not Available664Open in IMG/M
3300005468|Ga0070707_101464310Not Available649Open in IMG/M
3300005952|Ga0080026_10276346Not Available511Open in IMG/M
3300006028|Ga0070717_10692637All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae926Open in IMG/M
3300006059|Ga0075017_100606500All Organisms → cellular organisms → Bacteria837Open in IMG/M
3300009143|Ga0099792_10685614Not Available661Open in IMG/M
3300009519|Ga0116108_1192650Not Available599Open in IMG/M
3300009521|Ga0116222_1299871Not Available695Open in IMG/M
3300009522|Ga0116218_1396916Not Available616Open in IMG/M
3300009523|Ga0116221_1257616Not Available754Open in IMG/M
3300009523|Ga0116221_1274041All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300009621|Ga0116116_1146379Not Available623Open in IMG/M
3300009665|Ga0116135_1126713All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300009665|Ga0116135_1259797Not Available677Open in IMG/M
3300009700|Ga0116217_10539155Not Available731Open in IMG/M
3300010341|Ga0074045_10010605All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7635Open in IMG/M
3300012203|Ga0137399_10313773All Organisms → cellular organisms → Bacteria1297Open in IMG/M
3300012203|Ga0137399_11444476Not Available574Open in IMG/M
3300012205|Ga0137362_10769843All Organisms → cellular organisms → Bacteria825Open in IMG/M
3300012917|Ga0137395_10251550All Organisms → cellular organisms → Bacteria1242Open in IMG/M
3300012917|Ga0137395_10377511Not Available1013Open in IMG/M
3300014490|Ga0182010_10892197Not Available507Open in IMG/M
3300014491|Ga0182014_10509265Not Available589Open in IMG/M
3300014498|Ga0182019_10779059Not Available683Open in IMG/M
3300014638|Ga0181536_10063946All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2298Open in IMG/M
3300015197|Ga0167638_1064353Not Available768Open in IMG/M
3300016705|Ga0181507_1409873All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300017925|Ga0187856_1060062All Organisms → cellular organisms → Bacteria → Acidobacteria1624Open in IMG/M
3300017932|Ga0187814_10119166All Organisms → cellular organisms → Bacteria978Open in IMG/M
3300017934|Ga0187803_10018615All Organisms → cellular organisms → Bacteria → Acidobacteria2770Open in IMG/M
3300017943|Ga0187819_10008136All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5884Open in IMG/M
3300017943|Ga0187819_10679953Not Available581Open in IMG/M
3300017946|Ga0187879_10591541Not Available616Open in IMG/M
3300017948|Ga0187847_10576843All Organisms → cellular organisms → Bacteria627Open in IMG/M
3300018022|Ga0187864_10191696All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium 13_1_20CM_2_59_7976Open in IMG/M
3300018034|Ga0187863_10330629All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300018037|Ga0187883_10557295Not Available593Open in IMG/M
3300018038|Ga0187855_10366992All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300018044|Ga0187890_10437674Not Available734Open in IMG/M
3300018047|Ga0187859_10602531Not Available619Open in IMG/M
3300021402|Ga0210385_10649376All Organisms → cellular organisms → Bacteria806Open in IMG/M
3300021402|Ga0210385_11572505Not Available502Open in IMG/M
3300021406|Ga0210386_11695474Not Available522Open in IMG/M
3300021407|Ga0210383_10381494All Organisms → cellular organisms → Bacteria1216Open in IMG/M
3300021420|Ga0210394_11541610Not Available561Open in IMG/M
3300021477|Ga0210398_10004186All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae13610Open in IMG/M
3300021479|Ga0210410_10164650All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1980Open in IMG/M
3300023101|Ga0224557_1006668All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis7693Open in IMG/M
3300023250|Ga0224544_1040235All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300025576|Ga0208820_1112499Not Available651Open in IMG/M
3300026319|Ga0209647_1002332All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae15420Open in IMG/M
3300026469|Ga0257169_1048735Not Available664Open in IMG/M
3300026514|Ga0257168_1070694Not Available771Open in IMG/M
3300027370|Ga0209010_1093546All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300027590|Ga0209116_1075518Not Available737Open in IMG/M
3300027604|Ga0208324_1128849Not Available697Open in IMG/M
3300027625|Ga0208044_1040238All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1541Open in IMG/M
3300027641|Ga0208827_1180451Not Available570Open in IMG/M
3300027701|Ga0209447_10119703All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300027812|Ga0209656_10397113Not Available619Open in IMG/M
3300027911|Ga0209698_10527678All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300028572|Ga0302152_10119989All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae834Open in IMG/M
3300028651|Ga0302171_10178134Not Available526Open in IMG/M
3300028745|Ga0302267_10320248Not Available654Open in IMG/M
3300028770|Ga0302258_1145795Not Available582Open in IMG/M
3300028780|Ga0302225_10386505Not Available658Open in IMG/M
3300028788|Ga0302189_10370233Not Available566Open in IMG/M
3300028798|Ga0302222_10147310All Organisms → cellular organisms → Bacteria928Open in IMG/M
3300028906|Ga0308309_10425952All Organisms → cellular organisms → Bacteria1141Open in IMG/M
3300029952|Ga0311346_10265094All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1814Open in IMG/M
3300029953|Ga0311343_10772731Not Available788Open in IMG/M
3300029982|Ga0302277_1225100Not Available719Open in IMG/M
3300029990|Ga0311336_10014493All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5995Open in IMG/M
3300030503|Ga0311370_11572993Not Available683Open in IMG/M
3300030618|Ga0311354_10191633All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2193Open in IMG/M
3300030618|Ga0311354_10613155All Organisms → cellular organisms → Bacteria1055Open in IMG/M
3300031231|Ga0170824_103045751Not Available535Open in IMG/M
3300031231|Ga0170824_106213963Not Available531Open in IMG/M
3300031234|Ga0302325_10262367All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2858Open in IMG/M
3300031474|Ga0170818_100722048Not Available540Open in IMG/M
3300031525|Ga0302326_10598701All Organisms → cellular organisms → Bacteria → Acidobacteria1640Open in IMG/M
3300031820|Ga0307473_11556300Not Available503Open in IMG/M
3300031902|Ga0302322_103081654Not Available573Open in IMG/M
3300032160|Ga0311301_10709488All Organisms → cellular organisms → Bacteria → Acidobacteria1411Open in IMG/M
3300032205|Ga0307472_102726633Not Available505Open in IMG/M
3300032805|Ga0335078_10399639All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1805Open in IMG/M
3300032828|Ga0335080_10764161All Organisms → cellular organisms → Bacteria1002Open in IMG/M
3300032897|Ga0335071_10926446All Organisms → cellular organisms → Bacteria819Open in IMG/M
3300033829|Ga0334854_172561Not Available527Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland9.71%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil8.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.74%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil8.74%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil6.80%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen6.80%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa6.80%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.83%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog5.83%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland4.85%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.88%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.91%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.91%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil2.91%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.94%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.94%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.97%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.97%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.97%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.97%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.97%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.97%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001546Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009621Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300014490Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaGEnvironmentalOpen in IMG/M
3300014491Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaGEnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300015197Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)EnvironmentalOpen in IMG/M
3300016705Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017932Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4EnvironmentalOpen in IMG/M
3300017934Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018037Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300023101Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14EnvironmentalOpen in IMG/M
3300023250Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14EnvironmentalOpen in IMG/M
3300025576Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)EnvironmentalOpen in IMG/M
3300026319Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)EnvironmentalOpen in IMG/M
3300026469Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-BEnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300027370Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027590Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027604Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027701Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028572Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_1EnvironmentalOpen in IMG/M
3300028651Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_2EnvironmentalOpen in IMG/M
3300028678Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_2EnvironmentalOpen in IMG/M
3300028745Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_3EnvironmentalOpen in IMG/M
3300028770Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_4EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028788Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029952II_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300029982Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1EnvironmentalOpen in IMG/M
3300029990I_Fen_N2 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030673Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_4EnvironmentalOpen in IMG/M
3300030685Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_2EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031902Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300033829Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12659J15293_1000459823300001546Forest SoilMIPRSLLIGVATLLLLVVSMGIYLRHMRQRARQLEPAASTEALPSLRPPPAQPKP*
JGI12635J15846_1060656223300001593Forest SoilMIPRHLLIAVAVLLMLVVSLGIFLRHMRRREAALEASSGNALPVTP
JGIcombinedJ26739_10036650313300002245Forest SoilMIPRSLLIGVATLLALVVLMGVYLRHMRRRATELE
JGIcombinedJ26739_10071731413300002245Forest SoilMIPRHLVLSVAAMLVLVVTMGMYARHMRRQARELE
JGIcombinedJ26739_10111989613300002245Forest SoilMIPRSLLIGVATLLLLVVSMGIYLRHMRQRARQLEPAASTEALPVAPPATGPTETVTLYV
JGIcombinedJ26739_10130625613300002245Forest SoilMIPRSLLIAVALLLAVVVAMGLYLRRMQRQAAEVLPSAASALPVPPPA
JGIcombinedJ26739_10132035313300002245Forest SoilMIPRHLLIGVTALLLLVISMGIYLRQMRRQAVGLESPAASAFPVVPPAS
Ga0062385_1061579213300004080Bog Forest SoilMIPRSLLIGVAALLVVVVTMGIYLRHMRRQAVELESSAADTLPVLPPATGPTETVTLYVA
Ga0062385_1118001313300004080Bog Forest SoilMIPRSLLIAVAALLLLVVSMGVYLRHMRRRAAELEAPAVDTLPVAPPASGPTE
Ga0062384_10008455813300004082Bog Forest SoilMIPRSLLVAVAALLLLVVSMGIYLRHMRRRAAEVDSPAADTLPVTPPPSG
Ga0062389_10139819913300004092Bog Forest SoilMIPRHLLIAVAALLVLVVSMGIYARHMRRRAGEFQYAVDSPVAPPAS
Ga0062386_10108442423300004152Bog Forest SoilMIPRHLLIGVTALLLLVVAMGIYLRQMRRQAREIESPAEALSVPPPA
Ga0070707_10146431023300005468Corn, Switchgrass And Miscanthus RhizosphereMIPRHLLIGVTALLLLVVSMGIYLRHMQRQAAGLESPAAG
Ga0080026_1027634623300005952Permafrost SoilMIPRHLLIGVTALLVLVVSMGIYVRHMRQQARELEYSAAD
Ga0070717_1069263713300006028Corn, Switchgrass And Miscanthus RhizosphereMIPRHLLIGVTALLLLVVSMGIYLRHMQRQAAGLESPAAGALPVAPPASGPTETVTLYVA
Ga0075017_10060650023300006059WatershedsMIPRHLLIGVAALLVLVVAMGIYVRHMRLKAAEIESLAANALPVAPPAS
Ga0099792_1068561423300009143Vadose Zone SoilMIPRHLLIGVTALLLLVVSMGIYLRQMRRQAVGLESPAAGAFPVAPPASGPTET
Ga0116108_119265023300009519PeatlandMIPRHLLIGVAALLVLVVAMGIYLRHMRRQAGELESPAADALPVAPP
Ga0116222_129987123300009521Peatlands SoilMIPRHLLFGVAALLVLVVAMGIYLRQMRRQAKELASPAASALPVVP
Ga0116218_139691613300009522Peatlands SoilMIPRHLLFGVAALLVLVVAMGIYLRQMRRQAKELASPAASA
Ga0116221_125761613300009523Peatlands SoilMIPRHLLFGVAALLVLVVAMGIYLRQMRRQAKELASPAASALP
Ga0116221_127404113300009523Peatlands SoilMIPRHLLIGVAALLVLVVSMGIYVRHMRRRAEEFQYAAADALPVA
Ga0116116_114637923300009621PeatlandMIPRHLLIGVATLLVLVVAMGIYLRNMRREAGELESTAASALPVAP
Ga0116135_112671313300009665PeatlandMIPRHLLIGVTALLLLVVAMGIYLRHMRRQAGQLESPATALSVA
Ga0116135_125979713300009665PeatlandMIPRSLLIGVATLLLLVVCMGIYLRQMRQRARQPEPAAATEALPVAPPPTGP
Ga0116217_1053915523300009700Peatlands SoilMIPRHLLIGVAALLLLVVSMGIYLRHMRRQAGQFESPAGNALPVAP
Ga0074045_1001060573300010341Bog Forest SoilMIPRHLLIAVATLLVLVVSMGLYLRHMRRRAVEVESTAADALPVAP
Ga0137399_1031377323300012203Vadose Zone SoilMIPRHLLIGVTALLLLVVSMGIYLRQMRRQAVGLESPATSAFPVAPPVSGPTE
Ga0137399_1144447623300012203Vadose Zone SoilMIPRHLLIGVTALLLLVISMGIYLRQMRRQAVGLESPAVSTLP
Ga0137362_1076984313300012205Vadose Zone SoilMIPRHLLIGVAALLMVVVSMGIYLRHMRRRAVELESLAADALP
Ga0137395_1025155013300012917Vadose Zone SoilMIPRYLLIGVTALLLLVISMGIYLRQMRRQAVGLESPAATALPVAPPASGPTETVTLYLADD
Ga0137395_1037751113300012917Vadose Zone SoilMIPRHLLIGVAALLALVVSMGIYARHMRREARELDAAAASVLPVAPP
Ga0182010_1089219713300014490FenMIPRHLLIGVAALLLLVVSMGIYLRHMRRQAGQFESS
Ga0182014_1050926523300014491BogMIPRYLLIAVATLLLLVVAMGIYLRHMRRQAGELESAAASALPVVPPPSGPTE
Ga0182019_1077905913300014498FenMIPRYLLIAVAALLLLVVSMGIYLRHMRRQAAKVESLTTDALPVA
Ga0181536_1006394613300014638BogMIPRHLLIGVAALLVLVVAMGIYLRQMRRQAKELASPAASALP
Ga0167638_106435313300015197Glacier Forefield SoilMIPRHLLIGVTALLVLVVAMGIYIRQMRLRALESGSPVAGA
Ga0181507_140987313300016705PeatlandMIPRHLLIGVAALLVLVVAMGIYARHMRQQARQLDSL
Ga0187856_106006223300017925PeatlandMIPRHLLIGVAALLVLVVAMGIYLRHMRREAGELESPAADALPVAP
Ga0187814_1011916623300017932Freshwater SedimentMIPRHLLIAIAALLVLVVSMGIYLRQMRRRAGEFEYAAADAAPV
Ga0187803_1001861513300017934Freshwater SedimentMIPRHLLIGVAALLVLVVAMGIYLRQMRRQAKELASPAAS
Ga0187819_1000813663300017943Freshwater SedimentMIPRHLLIAVAALLVLVVSMGIYLRQMRRRAGEFEYAAADAAPVA
Ga0187819_1067995313300017943Freshwater SedimentMIPRHLLIGVAALLVLVVSMGIYVRHMRRQAGQFE
Ga0187879_1059154113300017946PeatlandMIPRHLLIAVATLFLLVVAMGIYLRHVRRQAVALDSSAADSALPVAPPA
Ga0187847_1057684323300017948PeatlandMIPRHLLISVAAMFVLVIAMGIYVRHMRRQAREIESPA
Ga0187864_1019169613300018022PeatlandMIPRHLLIAVAVLLVLVVAMGLYLRHMRLQARELESAAV
Ga0187863_1033062913300018034PeatlandMIPRHLLISVAAMFVLVIAMGLYARHMRRQAREIESPAASALPVAPPASG
Ga0187883_1055729513300018037PeatlandMIPRSLLIAVAALLLLVVSMGIYLRHMRWRAAEVESAAADVLPVAPPASGPTETVTLYV
Ga0187855_1036699223300018038PeatlandMIPRSLLIAVAALLLLVVSMGIYLRHMRRRAAEVESAAADVLPVAPP
Ga0187890_1043767413300018044PeatlandMIPRHLLIGVSVLLVAVVSMGIYLRQMRRRAGEVDTLATAALPVPPP
Ga0187859_1060253123300018047PeatlandMIPRSLLIGVATLLLLVVCMGIYLRRMRQRARQPEPAATTAALPV
Ga0210385_1064937613300021402SoilMIPRSLLIGVATLLLLVVSMGIYLRHMRQRARQIE
Ga0210385_1157250513300021402SoilMIPRHLVLSVAAMLVLVVTMGMYARHMRRQARELELPAANTLPVTPP
Ga0210386_1169547423300021406SoilMIPRSLLIGVATLLLLVVCMGIYLRQMRQRARQPEPAATTQALPVTPPPTGPTETVTLY
Ga0210383_1038149423300021407SoilMIPRHLLIGVATLLVLVVSMGIYLRQMRLRARELDYAEAEADASPVAPPT
Ga0210394_1154161033300021420SoilMIPRSLLVGVAALLAVVVSMGIYLRHMRLQERQVESVA
Ga0210398_1000418613300021477SoilMIPRSLLIGVATLLLLVVSMGIYLRHMRQRARQIEPAAGTEALPVAPPATGPTETV
Ga0210410_1016465013300021479SoilMIPRHLLIGVAALLLLVVSMGIYLRQMRRQAVGLESP
Ga0224557_100666873300023101SoilMIPRYLLITVAALLLLVVSMGIYLRHMRRQAGQLESSASDALPVPPPASGPTE
Ga0224544_104023523300023250SoilMIPRHLLIAVAVLLMLVVSLGIFLRHMRRREAALEASSGNALP
Ga0208820_111249923300025576PeatlandMIPRHLLIAVAVLLVLVVAMGLYLRHMRLQARELESAAVDASPVAPPATGPTE
Ga0209647_100233213300026319Grasslands SoilMIPRYLLIGVTALLLLVISMGIYLRQMRLQAVGPES
Ga0257169_104873513300026469SoilMIPRHLLIGVSALLVVVVSMGIYLRHMRRRAVELESLAA
Ga0257168_107069413300026514SoilMIPRHLLIGVSALLLLVISMGIYLRQMRRQAVGLESPAASAFPVVPPASGPT
Ga0209010_109354623300027370Forest SoilMIPRHLILSVAAMLVLVVTMGMYARHMRRQARELESP
Ga0209116_107551823300027590Forest SoilMIPRSLLVGVAMLLLLVVSMGIYLRHMRQRARQPEPAAATA
Ga0208324_112884913300027604Peatlands SoilMIPRHLLIGVAALLVLVVAMGIYLRQMRRQAKELASPAASALPVAPP
Ga0208044_104023823300027625Peatlands SoilMIPRHLLIGVAALLVLVVSMGIYLRHMRRQAGELEYSAA
Ga0208827_118045113300027641Peatlands SoilMIPRHLLIGVAALLVLVVSMGIYVRHMRRRAEEFQYAAADAL
Ga0209447_1011970323300027701Bog Forest SoilMIPRYLLIGVAALLALVVSMGIYLRHMRLRAEQLESVTNA
Ga0209656_1039711323300027812Bog Forest SoilMIPRHLLIGVAALLVLVVTMGIYVRHMRRRATEIEALAAD
Ga0209698_1052767813300027911WatershedsMIPRHLLIGVSALLVLVVSMGIYLRHMRRRVGELDSATANSFPVAPPPSGPTETVTLY
Ga0302152_1011998913300028572BogMIPRHLLIGVTALLIIVISMGIYLRHMRRRAGEVGPWASASLPVAPPATGPTETVTLYVANDAAGVLI
Ga0302171_1017813423300028651FenMIPRHLVIGVAAMLVLVLSMSLYLRQMRRRAAELQATAADARP
Ga0302165_1009806223300028678FenMIPRHLVIGVAAMLVLVLSMSLYLRQMRRRAAELQATAADARPVAPPASGP
Ga0302267_1032024813300028745BogMIPRHLLIGVTALLIIVISMGIYLRHMRRRAGEVGPWASASLPVAPPATGPTETVTLYVANDAAGV
Ga0302258_114579523300028770FenMIPRHLVIGVAAMLVLVLSMSLYLRQMRRRAAELQATA
Ga0302225_1038650523300028780PalsaMIPKSLLVGVAILLVLVVAMGVYLRHMRIRATETVPPTASALPVTPPASGPTETVTL
Ga0302189_1037023323300028788BogMIPRHLLIGVSVLLVAVVSMGIYLRQMRRRAGEVDTLATAA
Ga0302222_1014731023300028798PalsaMIPRHLLISVAALLLVVVSMGVYLRHMRLQAGELESAESIALPVAP
Ga0308309_1042595213300028906SoilMEGAVMTPRSLVFSVAAMLVLVVTMGIYARHMRRQARELESPVS
Ga0311346_1026509433300029952BogMIPRHLLIGVTALLIIVISMGIYLRHMRRRAGEVGPWASASLPVAPPATGPTETVTLYVANDAAGVLIARSAQIP
Ga0311343_1077273113300029953BogMIPRHLLIGVSVLLVAVVSMGIYLRQMRRRAGEVDTLATAALPVP
Ga0302277_122510023300029982BogMIPRHLLIGVSVLLVAVVAMGIYLRHMRRRAGEVDTMATAALPVAPPASGP
Ga0311336_1001449363300029990FenMIPRHLLLSVTAMLVLVIGMGFYARHMRHRALEFET
Ga0311370_1157299313300030503PalsaMIPRHLLIGVSVLLVAVVSMGIYLRQMRRRAGEVDTLA
Ga0311354_1019163313300030618PalsaMIPKSLLVGVAILLVLVVAMGVYLRHMRIRATETVPPTASALPVTPPASGPTETVTLY
Ga0311354_1061315523300030618PalsaMIPRSLLIAVATLLLLVVSMGIYLRHMRQRAAEVESPASDTLPVAPPVTGPTEAV
Ga0302287_1014159613300030673FenMIPRHLVIGVAAMLVLVLSMSLYLRQMRRRAAELQATAADARPVAP
Ga0302285_1016257523300030685FenMIPRHLVIGVAAMLVLVLSMSLCLRQMRRRAAELQATAADARPVAPPASGPT
Ga0170824_10304575123300031231Forest SoilMIPRHLLIGVTALLLLVISMGIYLRQMRRQAVGLESPAVGAFPVAPPASGPTE
Ga0170824_10621396323300031231Forest SoilMIPRHLLIGVTALLLLIVSMGIYLRRMQRQAAGLESPAVGALPVAPPASGPTE
Ga0302325_1026236733300031234PalsaMIPKSLLVGVAILLVLVVAMGVYLRHMRIRATETEPPTASALPVTPPASGPTETVT
Ga0170818_10072204823300031474Forest SoilMIPRHLLIGVTALLLLIVSMGIYLRRMQRQAAGLESPAVGALPVAPPASGPTETVT
Ga0302326_1059870113300031525PalsaMIPRHLLIGVAALLVLVVAMGIYLRHMRRRAGEIEPPAA
Ga0307473_1155630013300031820Hardwood Forest SoilMIPRSLLIGVAVLLAVVVTMGIYLRHMRRQAGELASPAASALPVPP
Ga0302322_10308165413300031902FenMIPRHLLLSVAAMLVLVIGMGFYARHMRHRALEFETT
Ga0311301_1070948823300032160Peatlands SoilMIPRHLLIGVAALLLLVVSMGIYLRHMRRQAREFDSL
Ga0307472_10272663323300032205Hardwood Forest SoilMIPRSLLIGVAVLLAVVVTMGIYLRHMRRQAGELASPAASALPVPPPAT
Ga0335078_1039963913300032805SoilVIPRSLLIGTAALLAAVIAMGVYLRHMRRQARQLEPAAAALP
Ga0335080_1076416113300032828SoilMIPRHLLIGVAAMVVVVIAMGIYARHMRQQARLFETGLPELPVAAP
Ga0335071_1092644613300032897SoilMIPRHLVISVAVMLVLVVTMGIYARRMRRQARELESPATT
Ga0334854_172561_1_1533300033829SoilMIPRSLLIAVATLLLLVVSMGIYLRHMRQRAAEVESPASDTLPVAPPVTGP


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