Metagenome Family F099912

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099912
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	70 residues
Representative Sequence	MPVSQPITRENRVIFSSGERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSALDSAAIAFRY
Number of Associated Samples	91
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	57.28 %
% of genes near scaffold ends (potentially truncated)	99.03 %
% of genes from short scaffolds (< 2000 bps)	92.23 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (22.330 % of family members)
Environment Ontology (ENVO)	Unclassified (34.951 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.369 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.00% β-sheet: 24.00% Coil/Unstructured: 44.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13538	UvrD_C_2	61.17
PF13604	AAA_30	13.59
PF12705	PDDEXK_1	0.97
PF01936	NYN	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	General function prediction only [R]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	92.23 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.80 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	92.23 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	92.23 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	92.23 %
Desulfuromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales	0.97 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	92.23 %
Geobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	0.97 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459009\|GA8DASG02IKIUX	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	520	Open in IMG/M
2199352025\|deepsgr__Contig_10129	All Organisms → cellular organisms → Bacteria → Proteobacteria	3872	Open in IMG/M
3300002126\|JGI24035J26624_1039411	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300004157\|Ga0062590_102981358	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300005167\|Ga0066672_10548078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	749	Open in IMG/M
3300005171\|Ga0066677_10033352	All Organisms → cellular organisms → Bacteria → Proteobacteria	2483	Open in IMG/M
3300005171\|Ga0066677_10117435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1427	Open in IMG/M
3300005171\|Ga0066677_10184433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1160	Open in IMG/M
3300005177\|Ga0066690_10002612	All Organisms → cellular organisms → Bacteria → Proteobacteria	7475	Open in IMG/M
3300005178\|Ga0066688_10504834	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	778	Open in IMG/M
3300005184\|Ga0066671_10328078	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	967	Open in IMG/M
3300005187\|Ga0066675_10801096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	711	Open in IMG/M
3300005293\|Ga0065715_10332883	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	981	Open in IMG/M
3300005336\|Ga0070680_100994462	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	724	Open in IMG/M
3300005355\|Ga0070671_100686304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	888	Open in IMG/M
3300005365\|Ga0070688_100852155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	716	Open in IMG/M
3300005434\|Ga0070709_11718022	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300005434\|Ga0070709_11803550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300005436\|Ga0070713_100797160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	905	Open in IMG/M
3300005437\|Ga0070710_10096965	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1748	Open in IMG/M
3300005437\|Ga0070710_11468191	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	511	Open in IMG/M
3300005439\|Ga0070711_100242609	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1409	Open in IMG/M
3300005439\|Ga0070711_100330314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1220	Open in IMG/M
3300005444\|Ga0070694_101564145	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	559	Open in IMG/M
3300005471\|Ga0070698_100386140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1333	Open in IMG/M
3300005546\|Ga0070696_100365626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1121	Open in IMG/M
3300005569\|Ga0066705_10476432	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	782	Open in IMG/M
3300006031\|Ga0066651_10464911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	671	Open in IMG/M
3300006032\|Ga0066696_10046723	All Organisms → cellular organisms → Bacteria → Proteobacteria	2409	Open in IMG/M
3300006032\|Ga0066696_10845346	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	583	Open in IMG/M
3300006163\|Ga0070715_10578605	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300006175\|Ga0070712_101977299	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	510	Open in IMG/M
3300006791\|Ga0066653_10317578	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	785	Open in IMG/M
3300006796\|Ga0066665_11421369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	538	Open in IMG/M
3300006797\|Ga0066659_11173110	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
3300006871\|Ga0075434_100558987	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1164	Open in IMG/M
3300006904\|Ga0075424_102823903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	506	Open in IMG/M
3300006954\|Ga0079219_11228173	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	652	Open in IMG/M
3300009174\|Ga0105241_12247600	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	542	Open in IMG/M
3300010044\|Ga0126310_11020139	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	653	Open in IMG/M
3300010303\|Ga0134082_10467312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	547	Open in IMG/M
3300010321\|Ga0134067_10023186	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1881	Open in IMG/M
3300010335\|Ga0134063_10146383	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1093	Open in IMG/M
3300010335\|Ga0134063_10561420	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	577	Open in IMG/M
3300010358\|Ga0126370_10595813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	953	Open in IMG/M
3300010373\|Ga0134128_12230465	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300011003\|Ga0138514_100084747	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	676	Open in IMG/M
3300012198\|Ga0137364_10892193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	673	Open in IMG/M
3300012200\|Ga0137382_10670957	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	742	Open in IMG/M
3300012200\|Ga0137382_11298069	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	514	Open in IMG/M
3300012211\|Ga0137377_11885459	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300012351\|Ga0137386_10984612	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	601	Open in IMG/M
3300012582\|Ga0137358_10330323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1034	Open in IMG/M
3300012924\|Ga0137413_10322879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1086	Open in IMG/M
3300012951\|Ga0164300_10960616	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	546	Open in IMG/M
3300012957\|Ga0164303_11568001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	501	Open in IMG/M
3300012960\|Ga0164301_10719350	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	754	Open in IMG/M
3300012960\|Ga0164301_11884478	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300012976\|Ga0134076_10097517	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1162	Open in IMG/M
3300012987\|Ga0164307_10090727	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1885	Open in IMG/M
3300012989\|Ga0164305_10646682	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	856	Open in IMG/M
3300013297\|Ga0157378_11355288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	753	Open in IMG/M
3300013307\|Ga0157372_12832207	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300014157\|Ga0134078_10140714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	941	Open in IMG/M
3300015242\|Ga0137412_10918789	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300017657\|Ga0134074_1077313	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1134	Open in IMG/M
3300018433\|Ga0066667_10273931	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1295	Open in IMG/M
3300018482\|Ga0066669_10226033	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1457	Open in IMG/M
3300018482\|Ga0066669_11807876	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300020001\|Ga0193731_1087138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	811	Open in IMG/M
3300020004\|Ga0193755_1153312	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	697	Open in IMG/M
3300020022\|Ga0193733_1030296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1527	Open in IMG/M
3300021088\|Ga0210404_10153304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1209	Open in IMG/M
3300021405\|Ga0210387_11238096	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	647	Open in IMG/M
3300021411\|Ga0193709_1034911	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1201	Open in IMG/M
3300021475\|Ga0210392_10462990	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	931	Open in IMG/M
3300021478\|Ga0210402_10248877	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1641	Open in IMG/M
3300021560\|Ga0126371_12656032	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300025898\|Ga0207692_10687542	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	663	Open in IMG/M
3300025928\|Ga0207700_10695706	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	907	Open in IMG/M
3300025928\|Ga0207700_10941380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	773	Open in IMG/M
3300025939\|Ga0207665_10022393	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae	4157	Open in IMG/M
3300025939\|Ga0207665_10560314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	889	Open in IMG/M
3300026088\|Ga0207641_10832016	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	914	Open in IMG/M
3300026121\|Ga0207683_10800077	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	875	Open in IMG/M
3300026322\|Ga0209687_1000162	All Organisms → cellular organisms → Bacteria	24423	Open in IMG/M
3300026323\|Ga0209472_1095753	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1189	Open in IMG/M
3300026331\|Ga0209267_1265886	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	584	Open in IMG/M
3300026332\|Ga0209803_1344498	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	516	Open in IMG/M
3300026335\|Ga0209804_1037128	All Organisms → cellular organisms → Bacteria → Proteobacteria	2440	Open in IMG/M
3300026342\|Ga0209057_1149068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	761	Open in IMG/M
3300026523\|Ga0209808_1130083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1014	Open in IMG/M
3300026527\|Ga0209059_1088681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1295	Open in IMG/M
3300026528\|Ga0209378_1225493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	600	Open in IMG/M
3300026542\|Ga0209805_1025758	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3040	Open in IMG/M
3300026548\|Ga0209161_10288994	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	811	Open in IMG/M
3300027750\|Ga0209461_10085442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300028791\|Ga0307290_10068557	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1287	Open in IMG/M
3300028811\|Ga0307292_10310850	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	661	Open in IMG/M
3300031057\|Ga0170834_104216928	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300031231\|Ga0170824_128684452	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504	Open in IMG/M
3300031716\|Ga0310813_10666737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	926	Open in IMG/M
3300033412\|Ga0310810_10659866	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	985	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.32%
Host-Associated	Host-Associated	10.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.32%
Plants	Host-Associated → Plants	10.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.88%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.97%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.99%
Loam	Environmental → Terrestrial → Soil → Loam	21.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.97%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.97%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.01%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	26.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	16.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300002126	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F47_07312180	2170459009	Grass Soil	MPISEPIARENRVIFSRGEREFTAKEVVDGAVLRGEIDPLWDEFVRIGECDRLASDQGLEPDESAVDAAA
deepsgr_01558630	2199352025	Soil	MPISEPIARENRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASDQGLEPDESAVDA
JGI24035J26624_10394111	3300002126	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAF
Ga0062590_1029813581	3300004157	Soil	MPISEPIARENRVIFSRGERDFTAGEIIDCAVLRGEIDPLWDEFVQTGECDRLANEQGLEPDESAVDA
Ga0066672_105480781	3300005167	Soil	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANER
Ga0066677_100333523	3300005171	Soil	MPVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPMWKVFLRLAECDRLANERELEADDSAL
Ga0066677_101174352	3300005171	Soil	MPISEAIARENRVIFSRGEREFMAGEIIDCAVLRGEIDPLWDEFVRIGECDRLANEQGLEPDESAVDAAAIAFRYQHD
Ga0066677_101844331	3300005171	Soil	MPVSQPITRENRVIFSSGEGGFTAKDVVDCAVVRGEIDPLWKNFLRVAECDRLANE
Ga0066690_100026124	3300005177	Soil	VIFSSGERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSALDSAAIAFR
Ga0066688_105048342	3300005178	Soil	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRLAECDRLANERELELDDS
Ga0066671_103280782	3300005184	Soil	MPVSQPIARENRVIFSCGERGFTAKEVVDSAVVRGEIDPVWKDFLRVAECDHLANERELEVDDSALDSAAIAFRYKHD
Ga0066675_108010962	3300005187	Soil	MPVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPLWRVFLRLAECDRLANERELEVDDSALDSAAIAFRYKHDLIT
Ga0065715_103328832	3300005293	Miscanthus Rhizosphere	MPISEPIARENRVIFSRGEREFTAGEIIDCAVLRGEIDPLWDEFVRVRECDRLANEQSLEPDESAVDAA
Ga0070680_1009944622	3300005336	Corn Rhizosphere	MPVRQPITREDRVIFSSGERGFTAKDVVDCALVRGEIDPLWREFLRVAECDRLANERELELDDSA
Ga0070671_1006863042	3300005355	Switchgrass Rhizosphere	MPISEPIAREKRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQ
Ga0070688_1008521552	3300005365	Switchgrass Rhizosphere	MPISEPIARENRVIFSRGEREFTAGEVTDCAVLRGEIDPLWDEFVQTGECDRLANEQGLEPDESAVDAAAIAFRYQHDLIT
Ga0070709_117180221	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGLGPEAAQFFDPPRSETMPVGQPIARESRVIFSSGERGFTAKEVMDCAFVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAF
Ga0070709_118035501	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MGLGTEAAQFFDPPRPETMPVRHPITRETRVIFSSGDRGFTAKDVVDCALVRGEIDPLWREFLRVAECDRLANERELELDDSALDSAAIAFRYKHD
Ga0070713_1007971601	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSA
Ga0070710_100969652	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MPISEPIARENRVIFSRGEREFTAREVVDCAVLRGEIDPLWDEFVRIGECDRLASDQGLEPDESAVD
Ga0070710_114681912	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MGLGTEAAQFFDPPRPETMPVRHPITRETRVIFSSGDRGFTAKDVVDCALVRGEIDPLWREFLRVAECDRLANERELELDDSALDSAAIAFRY
Ga0070711_1002426091	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPVGQPITRESRVFFSSGERGFTAKEVVDCAFARGEIDPLWKGFLRVAECDRLANERELELDDSALDSAAIAFRYKHD
Ga0070711_1003303141	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANE
Ga0070694_1015641452	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MPISEPIAREKRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQGLEPDESAV
Ga0070698_1003861401	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAFRYKHD
Ga0070696_1003656261	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAA
Ga0066705_104764321	3300005569	Soil	MPVSQPITRENRVIFSSGDRGFTAKEVVDCAVVRGEIDPLWKAFLRVAECDRRANERELEVDDSALDSAAIAF
Ga0066651_104649111	3300006031	Soil	MPISEPIARENRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDQLASEQELEPDESAVDAAAIAFRYHHDLI
Ga0066696_100467231	3300006032	Soil	MPVSQSITRENRVIFSSGDRGFTAKEVVDCAVVRGEIDPLWRVFLRLTECDRLANERELEVDDSALDSAAIAFRYKH
Ga0066696_108453461	3300006032	Soil	MPVSPSVTRDNRVIFSQGDRSFTVKDVIDWAAVRGELEPIWQEFIRVVECDRLANEQDLELDDSALDSASIAFRYEHDLIT
Ga0070715_105786051	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MPISEPIAREKRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQGLEPDESAVDAAAIAFRY
Ga0070712_1019772991	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRHPITRETRVIFSSGDRGFTAKDVVDCALVRGEIDPLWREFLRVAECDRLANERELELDDSALDSAAIAFRYKHDL
Ga0066653_103175782	3300006791	Soil	MPVSQPITRESRVIFSRGDRGFTSKDVIDCAVVRGEVDPAWKEFVRTAECDRLA
Ga0066665_114213691	3300006796	Soil	MPVRHPITRESRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELE
Ga0066659_111731101	3300006797	Soil	MPVRHPITRESRVIFSSGERGFTAKDVVDCALVRCEIDPLWKEFLRLAECDRLANERELELDDSALDSAAI
Ga0075434_1005589872	3300006871	Populus Rhizosphere	MPISEPITRENRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQELEPDESAVDAAAIAFRY
Ga0075424_1028239031	3300006904	Populus Rhizosphere	MPISEPIARENRVIFSRGEREFTAGEIIDCAVLRGEIDPLWDEFVRVRECDRLANEQSLEPDESAVDAAAI
Ga0079219_112281731	3300006954	Agricultural Soil	MPISEPIARENRVIFSRGEREFTAGEIVDCAVLRGEIDPLWDEFVRIGECHRRANEQGLEPDE
Ga0105241_122476001	3300009174	Corn Rhizosphere	MPISEPIARENRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQELEPD
Ga0126310_110201391	3300010044	Serpentine Soil	MPVSQPITRESRVIFSRGDRGLTSKEVIDCAVVRREVEPRWKEFVRAAECDRLA
Ga0134082_104673121	3300010303	Grasslands Soil	VIFSSGERGFTAKDILDCALVRGEIAPLWKEFLRVAECDRLANERELELDDSA
Ga0134067_100231862	3300010321	Grasslands Soil	MPVRHPITRESRVIFSSGERGFTAKDVVDCALVRCEIDPLWKEFLRVAECDRLANERELELD
Ga0134063_101463831	3300010335	Grasslands Soil	MPVRHPITRESRVIFSSGERGFTAKDVVDCALVRCEIDPLWKEFLRLAECDRLANERELELDDSALDSAAIAFRYKHDLI
Ga0134063_105614202	3300010335	Grasslands Soil	VIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAFRYKHDLI
Ga0126370_105958131	3300010358	Tropical Forest Soil	MPISEPIARENRVIFSRAEREFTAKEVVDCAVLRGEIDPLWDEFGRVGECERLASEQG
Ga0134128_122304652	3300010373	Terrestrial Soil	MPISEPIARENRVIFSRGEREFTAGEIIDCAVLRGEIDPLWDEFVRVRECDRLANEQSLEPDESAVDAAAIAFR
Ga0138514_1000847472	3300011003	Soil	MELGTEAAQFFDPPGPETMPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEVLRVAECDRLANERELELDDSALDSAAIAFRYKHDLITA
Ga0137364_108921931	3300012198	Vadose Zone Soil	MPVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPLWRVFLRLAECDRLANERELELDDSALDSAAIAFR
Ga0137382_106709571	3300012200	Vadose Zone Soil	MPVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPLWKVFLRLAECDRLANERELEVDDSALDSAAIAFRYKHDLI
Ga0137382_112980691	3300012200	Vadose Zone Soil	MPISQPITRENRVIFSSGERGFTAKEVVNCAVVRGEIDSLWKDFVRVAECDRLANERELALDDSAIDSAAISFRYKH
Ga0137377_118854591	3300012211	Vadose Zone Soil	MPISQPITRENRVIFSSGERGFTTKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSALDSAAI
Ga0137386_109846121	3300012351	Vadose Zone Soil	MGLGTEAAQFFDPLRSETMSVSQPITRENRVMFSSGERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELEVDEAALDSAAIAFRYKHDLIT
Ga0137358_103303231	3300012582	Vadose Zone Soil	VIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAFR
Ga0137413_103228792	3300012924	Vadose Zone Soil	VIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRLAECDRLANERELELDDSALDSAA
Ga0164300_109606161	3300012951	Soil	MPISEPIAREKRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQELEPDESAVDAAAIAFRYHHEL
Ga0164303_115680011	3300012957	Soil	MPISQPITRENRVIFSSGERGFTTKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDCAL
Ga0164301_107193502	3300012960	Soil	MPISEPIARENRVIFSRGEREFTAGEVTDCAVLRGEIDPLWDEFVRIGECDRLAGEQGLEPDESAVDAAAIAFRY
Ga0164301_118844782	3300012960	Soil	MPISQPITRENRVIFSSGERGFTTKEAVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDAALDSAASAFRYKHDLITA
Ga0134076_100975171	3300012976	Grasslands Soil	MPVSQPITRENRVIFSSDERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSA
Ga0164307_100907271	3300012987	Soil	MPISEPIARENRVIFSRGEREFTAGEVTDCAVLRGEIDPLWDEFVRIGECDRLAGEQGLEPDESAVDAAAIAFRYQHDLITA
Ga0164305_106466821	3300012989	Soil	MPISEPIARENRVIFSRGEREFTAGEVTDCAVLRGEIDPLWDEFVRIGECDRLAGEQGLEPDESAVDAAA
Ga0157378_113552881	3300013297	Miscanthus Rhizosphere	MPISEPIARENRVIFSRGEREFTAREVVDCAVLRGEIDPLWDEFVRVEGCDRLASEQGLEPDEGAIDSGVIAF
Ga0157372_128322072	3300013307	Corn Rhizosphere	MPISEPIAREKRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEEELEPDESAVDAAAIAFRY
Ga0134078_101407141	3300014157	Grasslands Soil	MPVSQPITRESRVIFSRGDRGFTSKDVIDCAVVRGEVEPRWKEFVQAAECDRLANEDELELDESAIDSA
Ga0137412_109187892	3300015242	Vadose Zone Soil	MPISQPITRENRVIFSSGERGFTTKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSALDSAAIA
Ga0134074_10773131	3300017657	Grasslands Soil	MPVSQPITRENRVIFSRDERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERE
Ga0066667_102739312	3300018433	Grasslands Soil	MPVSQRVTRDSRVIFSQGDRSFTVKDVIDWATVRGELEPIWAEFMRFVECVRLANEQNLELDDSGLDSASIAFRYVQELITTEETERWLDD
Ga0066669_102260332	3300018482	Grasslands Soil	MPISEPIVRENRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQELEPDE
Ga0066669_118078761	3300018482	Grasslands Soil	MPVSQSITRENRVIFSSGDRGFTAKEVVDCAVVRGEIDPLWRVFLRLTECDRLANERELEVDDSALDSAAIAFRYKHDLIT
Ga0193731_10871381	3300020001	Soil	MPISQPITRENRVIFSSGEREFTTKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSALDSAAIAFRYKHD
Ga0193755_11533121	3300020004	Soil	MRESRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRLAECDRLANERELELDDSALDSAAIAFRY
Ga0193733_10302962	3300020022	Soil	MPVGQPITRESRVIFSSGERGFTAKEVVDCAFARGEIDPLWKEFLRVAKCDRLANERELELDDSA
Ga0210404_101533042	3300021088	Soil	MPVRQPITREGPVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDS
Ga0210387_112380962	3300021405	Soil	MPVRQSITREDRVIFSSGERGFTAKDVVDCALVRGEVDPLWKEFLRVAECDRLADERELEVD
Ga0193709_10349112	3300021411	Soil	MPISQPITRENRVIFSSGEREFTTKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELD
Ga0210392_104629901	3300021475	Soil	MPVRQSITREDRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLADERELELD
Ga0210402_102488772	3300021478	Soil	MPVRQSITREDRVIFSSGERGFTAKDVVDCALVRGEVDPLWKEFLRVAECDRLADERELELDDSALDSAAIAFRYKHD
Ga0126371_126560322	3300021560	Tropical Forest Soil	MPISEPIARENRVIFSRGEREFTAKEVVDCAALRGEIDPLWDEFVRVGECDRLASEQGLE
Ga0207692_106875422	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MGLRTEAAQFFDPPRPETMPVRHPITRETRVIFSSGDRGFTAKDVVDCALVRGEIDPLWREFLRVAECDRLANERELELDDSALDSAAIAFRYKHDLIT
Ga0207700_106957061	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAFRYRHDLITA
Ga0207700_109413802	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRHPITRETRVIFSSGDRGFTAKDVVDCALVRGEIDPLWREFLRVAECDRLANERELELDDSALDSA
Ga0207665_100223931	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRHPITRETRVIFSSGDRGFTAKDALDCALVRGEIDPLWREFLRVAECDRLANERELELDDSALDSAAIAFR
Ga0207665_105603142	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAFR
Ga0207641_108320162	3300026088	Switchgrass Rhizosphere	MPVRQPITREDRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDR
Ga0207683_108000772	3300026121	Miscanthus Rhizosphere	MPISEPIARENRVIFSRGEREFTAREVVDCAVLRGEIDPLWDEFVRIGECDRLASDQGLEPDESAVDAAAIGFRYQHDLIT
Ga0209687_10001621	3300026322	Soil	MPVSQPITRENRVIFSSGERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSALDSAAIAFRYKH
Ga0209472_10957532	3300026323	Soil	MPISEPIARENRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQELE
Ga0209267_12658862	3300026331	Soil	MPVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPLWKVFLRLAECDRLANERELELDDSALDS
Ga0209803_13444981	3300026332	Soil	MPVSQPITRENRVIFSSGERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSA
Ga0209804_10371283	3300026335	Soil	MPVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPLWKVFLRLAECDRLANERELELDDSALDSAAIAFRYK
Ga0209057_11490682	3300026342	Soil	MPVSQSITRENRVIFSSGDRGFTAKEVVDCAVVRGEIDPLWRVFLRLTECDRLANERELEVDDSALDS
Ga0209808_11300832	3300026523	Soil	MPVSQSITRENRVIFSSGDRGFTAKEVVDCAVVRGEIDPLWRVFLRLTECDRLANERELEVDDSAL
Ga0209059_10886811	3300026527	Soil	MPVSQPITRENRVIFSSGEGGFTAKDVVDCAVMRGEIDPLWKNFLRVAECDRLANERELELDDSALDSAAIAFRYKHDLI
Ga0209378_12254932	3300026528	Soil	MPVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPLWRVFLRLAECDRLANERELE
Ga0209805_10257581	3300026542	Soil	MAVSQSITRENRVIFSSGERGFTAKEVVDCAVVRGEIDPLWKVFLRLAECDRLANERELE
Ga0209161_102889941	3300026548	Soil	MPVSQPITRENRVIFSSGERGFTAKEVVDCALVRGEIDPLWKDFLRVAECDRLANERELELDDSALDSAAIAFRY
Ga0209461_100854422	3300027750	Agave	MPISEPIARENRVIFSRGEREFTTQEVVDCAVLRGEIDSLWDEFIRVGECDRLASEQGLEPDEAVVD
Ga0307290_100685572	3300028791	Soil	MPVGQPITRESRVIFSSGERGFTAKEVVDCAFARGEIDPLWKEFLRVAECDRLANERE
Ga0307292_103108502	3300028811	Soil	MPVSQSITRENRVIFSSGERGFVAKEVVDCAVVRGEIDPLWKVFLRLAECDRLANERELEVDDSALDSAAI
Ga0170834_1042169281	3300031057	Forest Soil	MPISQPITRENRVIFSSGERGFTTKEVVDCALVRGEIDPLWKDFLRVAECDRLANE
Ga0170824_1286844521	3300031231	Forest Soil	MPISQPITRENRVIFSSGERGFTTKEVVDCALVRGEIDPLWKDFLRVAECDRLANER
Ga0310813_106667371	3300031716	Soil	MPVRQPITREGRVIFSSGERGFTAKDVVDCALVRGEIDPLWKEFLRVAECDRLANERELELDDSALDSAAIAFRYRHDLIT
Ga0310810_106598662	3300033412	Soil	MPISEPIARENRVIFSRGEREFTAKEVVDCAVLRGEIDPLWDEFVRIGECDRLASEQELEPDESAVDAAAIAFRYHH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099912

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences