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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F099886 |
| Family Type | Metagenome |
| Number of Sequences | 103 |
| Average Sequence Length | 46 residues |
| Representative Sequence | VLGVKKTISIKGVISFSLFFLNERITNNIIEIIIAINIMDSTIQPTTGEH |
| Number of Associated Samples | 45 |
| Number of Associated Scaffolds | 103 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Bacteria |
| % of genes with valid RBS motifs | 54.37 % |
| % of genes near scaffold ends (potentially truncated) | 57.28 % |
| % of genes from short scaffolds (< 2000 bps) | 80.58 % |
| Associated GOLD sequencing projects | 38 |
| AlphaFold2 3D model prediction | No |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Bacteria (61.165 % of family members) |
| NCBI Taxonomy ID | 2 |
| Taxonomy | All Organisms → cellular organisms → Bacteria |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (64.078 % of family members) |
| Environment Ontology (ENVO) | Unclassified (98.058 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (86.408 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 40.00% β-sheet: 16.00% Coil/Unstructured: 44.00% | Feature Viewer |
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| Powered by Feature Viewer | |||||
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| Pfam ID | Name | % Frequency in 103 Family Scaffolds |
|---|---|---|
| PF08238 | Sel1 | 9.71 |
| PF00656 | Peptidase_C14 | 5.83 |
| PF00589 | Phage_integrase | 3.88 |
| PF07661 | MORN_2 | 1.94 |
| PF00149 | Metallophos | 1.94 |
| PF13156 | Mrr_cat_2 | 0.97 |
| PF14072 | DndB | 0.97 |
| PF01844 | HNH | 0.97 |
| PF00565 | SNase | 0.97 |
| PF02086 | MethyltransfD12 | 0.97 |
| PF08281 | Sigma70_r4_2 | 0.97 |
| PF00271 | Helicase_C | 0.97 |
| PF00145 | DNA_methylase | 0.97 |
| PF13087 | AAA_12 | 0.97 |
| PF08487 | VIT | 0.97 |
| PF13532 | 2OG-FeII_Oxy_2 | 0.97 |
| PF08837 | DUF1810 | 0.97 |
| COG ID | Name | Functional Category | % Frequency in 103 Family Scaffolds |
|---|---|---|---|
| COG4249 | Uncharacterized conserved protein, contains caspase domain | General function prediction only [R] | 5.83 |
| COG2849 | Antitoxin component YwqK of the YwqJK toxin-antitoxin module | Defense mechanisms [V] | 1.94 |
| COG0270 | DNA-cytosine methylase | Replication, recombination and repair [L] | 0.97 |
| COG0338 | DNA-adenine methylase | Replication, recombination and repair [L] | 0.97 |
| COG3392 | Adenine-specific DNA methylase | Replication, recombination and repair [L] | 0.97 |
| COG5579 | Uncharacterized conserved protein, DUF1810 family | Function unknown [S] | 0.97 |
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| Name | Rank | Taxonomy | Distribution |
| All Organisms | root | All Organisms | 64.08 % |
| Unclassified | root | N/A | 35.92 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300000250|LPfeb09P261000mDRAFT_1029157 | All Organisms → cellular organisms → Bacteria | 838 | Open in IMG/M |
| 3300003478|JGI26238J51125_1014870 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 2007 | Open in IMG/M |
| 3300004276|Ga0066610_10020474 | Not Available | 2575 | Open in IMG/M |
| 3300005399|Ga0066860_10202669 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 674 | Open in IMG/M |
| 3300005408|Ga0066848_10107466 | Not Available | 758 | Open in IMG/M |
| 3300006164|Ga0075441_10006126 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 5271 | Open in IMG/M |
| 3300006164|Ga0075441_10009241 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 4216 | Open in IMG/M |
| 3300006164|Ga0075441_10044404 | Not Available | 1778 | Open in IMG/M |
| 3300006164|Ga0075441_10052612 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1612 | Open in IMG/M |
| 3300006164|Ga0075441_10115867 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1022 | Open in IMG/M |
| 3300006164|Ga0075441_10123049 | Not Available | 987 | Open in IMG/M |
| 3300006164|Ga0075441_10142304 | Not Available | 906 | Open in IMG/M |
| 3300006164|Ga0075441_10172457 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 811 | Open in IMG/M |
| 3300006164|Ga0075441_10303841 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 582 | Open in IMG/M |
| 3300006164|Ga0075441_10393741 | Not Available | 502 | Open in IMG/M |
| 3300006190|Ga0075446_10024349 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → unclassified Prochlorococcus → Prochlorococcus sp. MIT 0604 | 2003 | Open in IMG/M |
| 3300006190|Ga0075446_10135646 | All Organisms → cellular organisms → Bacteria | 707 | Open in IMG/M |
| 3300006190|Ga0075446_10144661 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 679 | Open in IMG/M |
| 3300006191|Ga0075447_10003221 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 7314 | Open in IMG/M |
| 3300006191|Ga0075447_10019669 | All Organisms → cellular organisms → Bacteria | 2693 | Open in IMG/M |
| 3300006191|Ga0075447_10034583 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1928 | Open in IMG/M |
| 3300006191|Ga0075447_10053769 | Not Available | 1477 | Open in IMG/M |
| 3300006191|Ga0075447_10055292 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1452 | Open in IMG/M |
| 3300006191|Ga0075447_10068687 | Not Available | 1270 | Open in IMG/M |
| 3300006191|Ga0075447_10078333 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1170 | Open in IMG/M |
| 3300006191|Ga0075447_10084337 | Not Available | 1117 | Open in IMG/M |
| 3300006191|Ga0075447_10114631 | Not Available | 925 | Open in IMG/M |
| 3300006191|Ga0075447_10141769 | All Organisms → cellular organisms → Bacteria | 811 | Open in IMG/M |
| 3300006191|Ga0075447_10202463 | Not Available | 652 | Open in IMG/M |
| 3300006191|Ga0075447_10247208 | All Organisms → cellular organisms → Bacteria | 578 | Open in IMG/M |
| 3300006191|Ga0075447_10278867 | Not Available | 538 | Open in IMG/M |
| 3300006193|Ga0075445_10037788 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1972 | Open in IMG/M |
| 3300006193|Ga0075445_10041201 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 1873 | Open in IMG/M |
| 3300006193|Ga0075445_10123379 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 948 | Open in IMG/M |
| 3300006193|Ga0075445_10162712 | All Organisms → cellular organisms → Bacteria | 796 | Open in IMG/M |
| 3300006352|Ga0075448_10053592 | Not Available | 1287 | Open in IMG/M |
| 3300006947|Ga0075444_10006720 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella buccalis | 6554 | Open in IMG/M |
| 3300006947|Ga0075444_10026379 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Arenitalea → Arenitalea lutea | 2940 | Open in IMG/M |
| 3300006947|Ga0075444_10027337 | All Organisms → cellular organisms → Bacteria | 2878 | Open in IMG/M |
| 3300006947|Ga0075444_10124491 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1104 | Open in IMG/M |
| 3300006947|Ga0075444_10144765 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 1000 | Open in IMG/M |
| 3300006947|Ga0075444_10267458 | Not Available | 668 | Open in IMG/M |
| 3300006947|Ga0075444_10316582 | Not Available | 599 | Open in IMG/M |
| 3300006947|Ga0075444_10365406 | Not Available | 547 | Open in IMG/M |
| 3300006947|Ga0075444_10389578 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 525 | Open in IMG/M |
| 3300006947|Ga0075444_10412814 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 506 | Open in IMG/M |
| 3300006947|Ga0075444_10417823 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium | 502 | Open in IMG/M |
| 3300008253|Ga0105349_10017229 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 3059 | Open in IMG/M |
| 3300009409|Ga0114993_10567177 | All Organisms → cellular organisms → Bacteria | 838 | Open in IMG/M |
| 3300009420|Ga0114994_10391112 | All Organisms → cellular organisms → Bacteria | 921 | Open in IMG/M |
| 3300009420|Ga0114994_10627189 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 704 | Open in IMG/M |
| 3300009472|Ga0115554_1352965 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 578 | Open in IMG/M |
| 3300009512|Ga0115003_10523143 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 694 | Open in IMG/M |
| 3300009512|Ga0115003_10620319 | Not Available | 631 | Open in IMG/M |
| 3300009705|Ga0115000_10667576 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 643 | Open in IMG/M |
| 3300009705|Ga0115000_10897458 | Not Available | 542 | Open in IMG/M |
| 3300009785|Ga0115001_10921854 | Not Available | 524 | Open in IMG/M |
| 3300010883|Ga0133547_11727872 | All Organisms → cellular organisms → Bacteria | 1161 | Open in IMG/M |
| 3300020376|Ga0211682_10092993 | Not Available | 1212 | Open in IMG/M |
| 3300020376|Ga0211682_10120358 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1046 | Open in IMG/M |
| 3300020376|Ga0211682_10385434 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Pseudothioglobus → Candidatus Pseudothioglobus singularis → Candidatus Pseudothioglobus singularis PS1 | 512 | Open in IMG/M |
| 3300021084|Ga0206678_10348155 | Not Available | 705 | Open in IMG/M |
| (restricted) 3300024261|Ga0233439_10041108 | Not Available | 2765 | Open in IMG/M |
| (restricted) 3300024327|Ga0233434_1019289 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 3819 | Open in IMG/M |
| 3300027522|Ga0209384_1011353 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3136 | Open in IMG/M |
| 3300027668|Ga0209482_1037753 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → unclassified Piscirickettsiaceae → Piscirickettsiaceae bacterium | 1877 | Open in IMG/M |
| 3300027668|Ga0209482_1059008 | Not Available | 1362 | Open in IMG/M |
| 3300027668|Ga0209482_1061807 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1318 | Open in IMG/M |
| 3300027668|Ga0209482_1095484 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 963 | Open in IMG/M |
| 3300027668|Ga0209482_1102616 | All Organisms → cellular organisms → Bacteria | 914 | Open in IMG/M |
| 3300027668|Ga0209482_1108450 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 877 | Open in IMG/M |
| 3300027672|Ga0209383_1013954 | All Organisms → cellular organisms → Bacteria | 3660 | Open in IMG/M |
| 3300027672|Ga0209383_1127577 | Not Available | 816 | Open in IMG/M |
| 3300027672|Ga0209383_1145530 | All Organisms → cellular organisms → Bacteria | 741 | Open in IMG/M |
| 3300027672|Ga0209383_1171358 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 656 | Open in IMG/M |
| 3300027672|Ga0209383_1188149 | Not Available | 611 | Open in IMG/M |
| 3300027687|Ga0209710_1104342 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1112 | Open in IMG/M |
| 3300027699|Ga0209752_1110533 | Not Available | 817 | Open in IMG/M |
| 3300027704|Ga0209816_1008324 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 6310 | Open in IMG/M |
| 3300027704|Ga0209816_1019254 | All Organisms → cellular organisms → Bacteria | 3670 | Open in IMG/M |
| 3300027704|Ga0209816_1025862 | Not Available | 3001 | Open in IMG/M |
| 3300027704|Ga0209816_1062351 | All Organisms → cellular organisms → Bacteria | 1611 | Open in IMG/M |
| 3300027704|Ga0209816_1074122 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 1416 | Open in IMG/M |
| 3300027704|Ga0209816_1195609 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 677 | Open in IMG/M |
| 3300027714|Ga0209815_1188511 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 641 | Open in IMG/M |
| 3300027771|Ga0209279_10237924 | Not Available | 550 | Open in IMG/M |
| 3300027779|Ga0209709_10074227 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1866 | Open in IMG/M |
| 3300027779|Ga0209709_10333809 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 630 | Open in IMG/M |
| 3300027791|Ga0209830_10447011 | Not Available | 540 | Open in IMG/M |
| 3300027813|Ga0209090_10105373 | All Organisms → cellular organisms → Bacteria | 1524 | Open in IMG/M |
| 3300028287|Ga0257126_1034954 | Not Available | 2218 | Open in IMG/M |
| 3300031141|Ga0308021_10303194 | Not Available | 596 | Open in IMG/M |
| 3300031598|Ga0308019_10155866 | Not Available | 904 | Open in IMG/M |
| 3300031598|Ga0308019_10358032 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 532 | Open in IMG/M |
| 3300031599|Ga0308007_10322328 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp. NP1 | 509 | Open in IMG/M |
| 3300031627|Ga0302118_10049090 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2153 | Open in IMG/M |
| 3300031630|Ga0308004_10171642 | Not Available | 896 | Open in IMG/M |
| 3300031630|Ga0308004_10282191 | Not Available | 647 | Open in IMG/M |
| 3300031639|Ga0302117_10209238 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 799 | Open in IMG/M |
| 3300031647|Ga0308012_10221041 | Not Available | 746 | Open in IMG/M |
| 3300031696|Ga0307995_1052550 | All Organisms → cellular organisms → Bacteria | 1697 | Open in IMG/M |
| 3300031757|Ga0315328_10221815 | Not Available | 1106 | Open in IMG/M |
| 3300032820|Ga0310342_103052643 | Not Available | 557 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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| Habitat | Taxonomy | Distribution |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 64.08% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 18.45% |
| Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 7.77% |
| Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 1.94% |
| Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 1.94% |
| Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 0.97% |
| Marine | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine | 0.97% |
| Marine | Environmental → Aquatic → Marine → Inlet → Unclassified → Marine | 0.97% |
| Marine | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine | 0.97% |
| Methane Seep Mesocosm | Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm | 0.97% |
| Pelagic Marine | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine | 0.97% |
| Visualization |
|---|
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000250 | Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 1000m | Environmental | Open in IMG/M |
| 3300003478 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA | Environmental | Open in IMG/M |
| 3300004276 | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_165m | Environmental | Open in IMG/M |
| 3300005399 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F14-07SV275 | Environmental | Open in IMG/M |
| 3300005408 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV72 | Environmental | Open in IMG/M |
| 3300006164 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA | Environmental | Open in IMG/M |
| 3300006190 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA | Environmental | Open in IMG/M |
| 3300006191 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA | Environmental | Open in IMG/M |
| 3300006193 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA | Environmental | Open in IMG/M |
| 3300006352 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG108-DNA | Environmental | Open in IMG/M |
| 3300006947 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA | Environmental | Open in IMG/M |
| 3300008253 | Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1B Hudson Canyon | Environmental | Open in IMG/M |
| 3300009409 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 | Environmental | Open in IMG/M |
| 3300009420 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 | Environmental | Open in IMG/M |
| 3300009472 | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404 | Environmental | Open in IMG/M |
| 3300009512 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 | Environmental | Open in IMG/M |
| 3300009705 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 | Environmental | Open in IMG/M |
| 3300009785 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 | Environmental | Open in IMG/M |
| 3300010883 | western Arctic Ocean co-assembly | Environmental | Open in IMG/M |
| 3300020376 | Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121) | Environmental | Open in IMG/M |
| 3300021084 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015 | Environmental | Open in IMG/M |
| 3300024261 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MG | Environmental | Open in IMG/M |
| 3300024327 (restricted) | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_120_MG | Environmental | Open in IMG/M |
| 3300027522 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027668 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027672 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027687 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes) | Environmental | Open in IMG/M |
| 3300027699 | Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_3_250m (SPAdes) | Environmental | Open in IMG/M |
| 3300027704 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027714 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027771 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA (SPAdes) | Environmental | Open in IMG/M |
| 3300027779 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes) | Environmental | Open in IMG/M |
| 3300027791 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes) | Environmental | Open in IMG/M |
| 3300027813 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes) | Environmental | Open in IMG/M |
| 3300028287 | Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120m | Environmental | Open in IMG/M |
| 3300031141 | Marine microbial communities from water near the shore, Antarctic Ocean - #351 | Environmental | Open in IMG/M |
| 3300031598 | Marine microbial communities from water near the shore, Antarctic Ocean - #284 | Environmental | Open in IMG/M |
| 3300031599 | Marine microbial communities from water near the shore, Antarctic Ocean - #71 | Environmental | Open in IMG/M |
| 3300031627 | Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1 | Environmental | Open in IMG/M |
| 3300031630 | Marine microbial communities from water near the shore, Antarctic Ocean - #38 | Environmental | Open in IMG/M |
| 3300031639 | Marine microbial communities from Western Arctic Ocean, Canada - AG5_32.2 | Environmental | Open in IMG/M |
| 3300031647 | Marine microbial communities from water near the shore, Antarctic Ocean - #179 | Environmental | Open in IMG/M |
| 3300031696 | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #262 | Environmental | Open in IMG/M |
| 3300031757 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315 | Environmental | Open in IMG/M |
| 3300032820 | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG | Environmental | Open in IMG/M |
| Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| LPfeb09P261000mDRAFT_10291571 | 3300000250 | Marine | NSINGVISFNLFFLNMRITNNIIEIIIAIIIGTSTPQPITGEHK* |
| JGI26238J51125_10148701 | 3300003478 | Marine | VKKTISIKGVTSFSLFFLNMRITNNIAEIIIAIIIGTSTPQPITGEHK* |
| Ga0066610_100204742 | 3300004276 | Marine | VLGVKKTISIKGVTSFSLFFLNMRITNNIAEIIIAIIIGTSTPQPITGEHK* |
| Ga0066860_102026692 | 3300005399 | Marine | MRLGVQKTKSNKGVISFNLFFLNTRTTNNIAEMIIVSANGTSTPHPITGEHR* |
| Ga0066848_101074663 | 3300005408 | Marine | VQKTKSNKGVISFNLFFLNMRITNNIAEIIIVSANGPSTPQPITGE |
| Ga0075441_100061267 | 3300006164 | Marine | VKKTISIKGVTSFSLFFLNERITNNTIEIIMAINIMVSTIQPTTGEHR* |
| Ga0075441_100092415 | 3300006164 | Marine | VLGVKKTISITGVTSFSLFFLNERITNNIIEIIIAINIMVSTIQPTTGEHR* |
| Ga0075441_100444041 | 3300006164 | Marine | VLGVKKTISIRGVTSFSLFFLNTRITNNIIETIIAINIMDSTIQPT |
| Ga0075441_100526122 | 3300006164 | Marine | VLGVKKTISIKGVISFSLFFLNDRITTNIIEIIMAINIIDSTIQPTTGEHR* |
| Ga0075441_101158673 | 3300006164 | Marine | KVLGVKKAISIKGVTSFSLFFLNERITNNTIEIIMAINIIDSTIQPTTGEHR* |
| Ga0075441_101230491 | 3300006164 | Marine | VLGVKKRISIKGVTSFSLFFLNERITNNIIEIIIAINII |
| Ga0075441_101423041 | 3300006164 | Marine | VKKAISIKGVTSFSLFFLNERITNNTIEIIMAINI |
| Ga0075441_101724572 | 3300006164 | Marine | VKKTISIRGVTSFSLFFLNERITNNTIEIIIAINIMLSTIQPTTGEHR* |
| Ga0075441_103038412 | 3300006164 | Marine | VLGVKNTISIKGVISFSLFFLNERITNNIIEIIIAINIIDSTIQPTTGEHR* |
| Ga0075441_103937411 | 3300006164 | Marine | VLGVKKIISIKGVTSFSLFFLNERITNNIIEIIIA |
| Ga0075446_100243491 | 3300006190 | Marine | VKKTISIKGVISFNLFFLNERITNNIIEIIMAINIIDSTIQPTTGEHR* |
| Ga0075446_101356463 | 3300006190 | Marine | ISIKGVISFSLFFLNERITNKIIEIIMAINIMVSTIQPTTGEHR* |
| Ga0075446_101446612 | 3300006190 | Marine | VKNTISIKGVISFSLFFLNERITNNIIEIIIAINIIDSTIQPTTGEHR* |
| Ga0075447_100032215 | 3300006191 | Marine | VKKDISIKGVISFSLFFLNDRITNNTIEIIIAINIIDSTIQPTTGEHR |
| Ga0075447_100196695 | 3300006191 | Marine | MSIKGVISFSLVFLNNRITTNIIEIIMAINIIDSIIQPTTGEHR* |
| Ga0075447_100345831 | 3300006191 | Marine | VKKTISITGVTSFSLFFLNERITNNIIEIIIAINI |
| Ga0075447_100537693 | 3300006191 | Marine | VLGVKKTISIKGVISFSLFFLNERITNNIIEIIMAINIMDSMMQPTTGEHR* |
| Ga0075447_100552923 | 3300006191 | Marine | VLGVKKTISIKGVTSFSLFFLNERITNNTIEIIMAINIMVSTIQPTTGEHR* |
| Ga0075447_100686871 | 3300006191 | Marine | VKKAISIKGVTSFSSFFLNERITNNTIEIMMAINIIDSTIQPTTGEHR* |
| Ga0075447_100783333 | 3300006191 | Marine | VLGVKKTISIKGVISFSLFFLNDRITNNTIEIIIAINIIDSTIQPTTGEHR* |
| Ga0075447_100843373 | 3300006191 | Marine | VLGVKKTISIKGVTSFSLFLLNERITNNTIEIIIAINIMLSTIQPTTGEHR* |
| Ga0075447_101146312 | 3300006191 | Marine | LGVKKTISITGVTSFSLFFLNERITNNIIEIIIAINIMVSTIQPTTGEHR* |
| Ga0075447_101417693 | 3300006191 | Marine | VLGVKKTISINGVISFSLFFLNERITNNIIEIIIAINIMVSTIQPTTGEHR* |
| Ga0075447_102024632 | 3300006191 | Marine | VLGVKKTISIRGVTSFSLFFLNTRITNNIIETIIAINIMDST |
| Ga0075447_102472083 | 3300006191 | Marine | RSTKSINGVISLALSFLNARITNNIIETIIAINIGTSTPHPMTGEHK* |
| Ga0075447_102788671 | 3300006191 | Marine | VKKTISIKGVTSFSLFFLNERITNSIIEIIIAINIIDSTIQPTTGEQR* |
| Ga0075445_100377884 | 3300006193 | Marine | VLGVKKTMSIKGVTSFSLFFLNTRITNNIIETIMAINIMDSTIQPTTGEHR* |
| Ga0075445_100412013 | 3300006193 | Marine | VLGVKKAISIKGVISFSLFFLNERITNNIIEIIMAINIMVSTIQPTTGEHR* |
| Ga0075445_101233792 | 3300006193 | Marine | VLGVKKTISIKGVTSFSLFFLNERITNNTIEIIMAINIMDSTIQPTTGEHR* |
| Ga0075445_101627123 | 3300006193 | Marine | VLGVKKTISINGVISFSLFFLNERITNNIIEIIIAINIMVSTI |
| Ga0075448_100535922 | 3300006352 | Marine | VKKTISINGVISFNLFFLNERITNNIIEIIMAINIMDSTIHPTTGEHR* |
| Ga0075444_100067201 | 3300006947 | Marine | VKKTISIKGVTSFSLFFLNERITNNIIEIIIAINIMVSTIQPT |
| Ga0075444_100263791 | 3300006947 | Marine | VKKTISIKGVISFSLFFLNKRITNNTIEIIIAINIMLSTIQPTTGEHR |
| Ga0075444_100273375 | 3300006947 | Marine | VLGVKKTISIKGVTSFSLFLLNERITNNTIEIIIAINIM |
| Ga0075444_101244913 | 3300006947 | Marine | SLFFLNDRITNNTIEIIIAINIIDSTIQPTTGEHR* |
| Ga0075444_101447651 | 3300006947 | Marine | VLGVKKTISIKGVTSFSLFFLNDRITNNTIEIIMAINIM |
| Ga0075444_102674581 | 3300006947 | Marine | VKKTISIKGVISFSLFFLNERITNNIIEIIIAINIIDSMIQP |
| Ga0075444_103165821 | 3300006947 | Marine | VLGVKKTISIKGVISFSLFFLNDRITTNIIEIIMA |
| Ga0075444_103654061 | 3300006947 | Marine | VLGVKKTISIKGVISFSLFFLNERITNKIIEIIMAINIMVSTIQPTTGEHR* |
| Ga0075444_103895781 | 3300006947 | Marine | VLGVKKDISIKGVISFSLFFLNDRITNNTIEIIIAINIIDSTI |
| Ga0075444_104128143 | 3300006947 | Marine | VKKTISIKGVISFSLFFLNERITNNTIEIIMAINI |
| Ga0075444_104178231 | 3300006947 | Marine | VLGVKKTMSIKGVTSFSLCFLNTRITNNIIETIMAINIMDSTIQPT |
| Ga0105349_100172292 | 3300008253 | Methane Seep Mesocosm | VLGVKKTISIKGVTSFSLFFLNMRITNNIAEIIIAIIIGASTPQPITGEHK* |
| Ga0114993_105671771 | 3300009409 | Marine | VLGVKKTMSIKGVTSFSLFFLNTRITNNIIEIIMAINIMDSTIQPTTGEHR* |
| Ga0114994_103911121 | 3300009420 | Marine | VLGVKKTMSIKGVTSFSLFFLNTRITNNIIEIIMAINIMDSTIQPT |
| Ga0114994_106271891 | 3300009420 | Marine | VLGVKKTISIKGVISFSLFFLNERITNNIIEIIIAINIMDSTIQPTTGEH |
| Ga0115554_13529651 | 3300009472 | Pelagic Marine | MSINGVISFSLFFLKTRNNINIIEIVIAMSIGTSGPQPTTGEQR* |
| Ga0115003_105231431 | 3300009512 | Marine | VLGVKKTMSIKGVISFNLFFLNERITNNIIEIIMAINIMDSTIHPTTGEH |
| Ga0115003_106203192 | 3300009512 | Marine | VLGVKKTISIRGVISFSLFFLNDRITTNIIEIIMAINIIDSTI |
| Ga0115000_106675762 | 3300009705 | Marine | VLGVKKTMSIKGVISFNLFFLNERITNNIIEIIMAINIMDSTIHPTTGEHR* |
| Ga0115000_108974582 | 3300009705 | Marine | VKKTISIKGVTSLSLFFLNERITNNIIEIIIAINIIDSTIQPTTGEHR |
| Ga0115001_109218542 | 3300009785 | Marine | VLGVKKTISIKGVISFSLFFLNDRITTNIIEIIMAINIIDS |
| Ga0133547_117278721 | 3300010883 | Marine | VLGVKKTISIKGVTSFSLFFLNTRITNNIIEIIMAINIMDSTIQPTTGE |
| Ga0211682_100929931 | 3300020376 | Marine | VLGVKKTISIKGVTSFSLFLLNERITNNTIEIIIAINIMLS |
| Ga0211682_101203583 | 3300020376 | Marine | VKKTISIKGVISFSLFFLNERITNNTIEIIIAINIIDSTIQPTTGEHR |
| Ga0211682_103854341 | 3300020376 | Marine | VLGVKKIISIKGVTSFSLFFLNERITNNIIEIIMAINIMLSTI |
| Ga0206678_103481552 | 3300021084 | Seawater | MRLGVQKTKSNKGVISFNLFFLNMRITNNIAEIIIVSANGPSTPQPITGEHR |
| (restricted) Ga0233439_100411082 | 3300024261 | Seawater | VLGVKKTISIKGVTSFSLFFLNMRITNNIAEIIIAIIIGTSTPQPITGEHK |
| (restricted) Ga0233434_10192893 | 3300024327 | Seawater | VKKTISIKGVTSFSLFFLNMRITNNIAEIIIAIIIGTSTPQPITGEHK |
| Ga0209384_10113532 | 3300027522 | Marine | VLGVKKTISITGVTSFSLFFLNERITNNIIEIIIAINIMVSTIQPTTGEHR |
| Ga0209482_10377534 | 3300027668 | Marine | VLGVKKTISINGVISFSLFFLNERITNNIIEIIIAINIMVSTIQPTTGEHR |
| Ga0209482_10590082 | 3300027668 | Marine | VLGVKKTISIKGVISFSLFFLNERITNNIIEIIMAINIMDSMMQPTTGEHR |
| Ga0209482_10618071 | 3300027668 | Marine | VISFSLFFLNERITNNIIEIIIAINIMVSTIQPTTGEHR |
| Ga0209482_10954844 | 3300027668 | Marine | MKKTISIKGVISFSLFFLNKRITNNIIEIIIAINIMLSTIQPT |
| Ga0209482_11026161 | 3300027668 | Marine | VLGVKKTMSIKGVTSFSLFFLNTRITNNIIETIMAINIMDSTIQPTTGEHR |
| Ga0209482_11084502 | 3300027668 | Marine | ISIKGVTSFSLFFLNERITNNTIEIIMAINIMVSTIQPTTGEHR |
| Ga0209383_10139546 | 3300027672 | Marine | VLGVKKTISIKGVTSFSLFFLNERITNNTIEIIMAINIMDSTIQPTTGEHR |
| Ga0209383_11275771 | 3300027672 | Marine | VLGVKKTISIKGVTSFSLFLLNERITNNTIEIIIAINIMVSTIQPTTGEHR |
| Ga0209383_11455301 | 3300027672 | Marine | GARSTKSINGVISLALSFLNARITNNIIETIIAINIGTSTPHPMTGEHK |
| Ga0209383_11713582 | 3300027672 | Marine | VKKAISIKGVISFSLFFLNERITNNTIEIMMAINIIDSMIQPTTGEHR |
| Ga0209383_11881491 | 3300027672 | Marine | VLGVKKTISIKGVISFSLFFLNERITNNIIEIIMAINIMVSTIQPTTG |
| Ga0209710_11043424 | 3300027687 | Marine | VKKTISIKGVTSFSLFFLNDRITTNIIEIIMAINIIDSTIQPTTGEHR |
| Ga0209752_11105331 | 3300027699 | Marine | KRLGVQKTKSNKGVISFNLFFLNMRITNNIAEIIIVSANGASTPQPITGEHR |
| Ga0209816_10083244 | 3300027704 | Marine | VKKTISIKGVTSFSLFFLNERITNNTIEIIMAINIMVSTIQPTTGEHR |
| Ga0209816_10192542 | 3300027704 | Marine | VKKAISIKGVTSFSLFFLNERITNNTIEIIMAINIIDSTIQPTTGEHR |
| Ga0209816_10258624 | 3300027704 | Marine | VKKTISIKGVTSFSLFFLNDRITNNTIEIIMAINIMVSTIHPTTGEHR |
| Ga0209816_10623511 | 3300027704 | Marine | VKKTISIKGVISFSLFFLNERITNNIIEIIIAINIIDSTIQPT |
| Ga0209816_10741221 | 3300027704 | Marine | VKKTISIKGVISFSLFFLNERITNNTIEIIMAINIIDSTIQPT |
| Ga0209816_11956092 | 3300027704 | Marine | VKKTISIKGVISFSLFFLNERITNNTIEIIMAINIMVSTIQPTTGEHR |
| Ga0209815_11885111 | 3300027714 | Marine | AISIKGVTSFSLFFLNERITNNTIEIIMAINIMVSTIQPTTGEHR |
| Ga0209279_102379241 | 3300027771 | Marine | VLGVKKTISIKGVMSFSLFFLNERITNNIIEIIIAIN |
| Ga0209709_100742272 | 3300027779 | Marine | VLGVKKTMSIKGVTSFSLFFLNTRITNNIIEIIMAINIMDSTIQPTTGEHR |
| Ga0209709_103338092 | 3300027779 | Marine | MVLGVKKTISIKGVTSFSLFFLNDRITTNIIEIIMAINIIDSTIQPTTGEHR |
| Ga0209830_104470111 | 3300027791 | Marine | VLGVKKTISIRGVISFSLFFLNDRITTNIIEIIMAINII |
| Ga0209090_101053733 | 3300027813 | Marine | VLGVKKTMSIKGVTSFSLFFLNTRITNNIIEIIMAINIMDSTIQPTTGEH |
| Ga0257126_10349541 | 3300028287 | Marine | TISIKGVTSFSLFFLNMRITNNIAEIIIAIIIGTSTPQPITGEHK |
| Ga0308021_103031941 | 3300031141 | Marine | VKKTISIKGVISFNLFFLNERITNNTIEIIIAINIMVSM |
| Ga0308019_101558663 | 3300031598 | Marine | VKKAISIKGVISFSLFFLNERITNNIIEIIIAINIIVSTIQPTTGEHR |
| Ga0308019_103580321 | 3300031598 | Marine | VLGVKKAISIKGVISFSLFFLNERITNNIIEIIMA |
| Ga0308007_103223282 | 3300031599 | Marine | VLGVKKIISIRGVTSFSLFFLNERITNNIIEIIIAINIIDSTIQPTTGEHRXGPAREPKS |
| Ga0302118_100490902 | 3300031627 | Marine | VLGVKKTMSIKGVTSFSLFFLNTRITNNTIEIIMAINIMDSTIQPTTGEHR |
| Ga0308004_101716421 | 3300031630 | Marine | VKKTISIKGVISFNLFFLNERITNNTIEIIMAINIMLSTIQPTTGEHR |
| Ga0308004_102821911 | 3300031630 | Marine | VLGVKKTISIKGVMSFSLFFLNERITNNIIEIIIAINIMVSTIQPTTG |
| Ga0302117_102092382 | 3300031639 | Marine | VLGVKKTISIRGVISFSLFFLNDRITTNIIEIIMAINIIDSTIQPTTGEHR |
| Ga0308012_102210411 | 3300031647 | Marine | VKKTISIKGVISFSLFFLNERITNNIIEIIIAINIIVSTIQPTTGEHR |
| Ga0307995_10525501 | 3300031696 | Marine | ISIKGVTSFSLFFLNTRITNNIIEIIMAINIMDSTIHPTTGEHR |
| Ga0315328_102218152 | 3300031757 | Seawater | MRLGVKKTISIKGVTSFSLFFLNTRITNNITEIIIAIIIGASTPQPITGEHR |
| Ga0310342_1030526431 | 3300032820 | Seawater | VQKTKSNKGVISFNLFFLNMRITNNIAEIIIVIANGPSTPQPITGEHR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |