Metagenome Family F099833

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F099833
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	80 residues
Representative Sequence	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVIVAILCVVIYFVRHPRVQEEIHISR
Number of Associated Samples	81
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.50 %
% of genes near scaffold ends (potentially truncated)	23.30 %
% of genes from short scaffolds (< 2000 bps)	87.38 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (91.262 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (14.563 % of family members)
Environment Ontology (ENVO)	Unclassified (46.602 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.223 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.94% β-sheet: 1.87% Coil/Unstructured: 40.19%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF01618	MotA_ExbB	4.85
PF00759	Glyco_hydro_9	3.88
PF14332	DUF4388	1.94
PF13432	TPR_16	1.94
PF02566	OsmC	1.94
PF12770	CHAT	1.94
PF03466	LysR_substrate	0.97
PF00483	NTP_transferase	0.97
PF13858	DUF4199	0.97
PF01432	Peptidase_M3	0.97
PF00246	Peptidase_M14	0.97
PF12161	HsdM_N	0.97
PF13517	FG-GAP_3	0.97
PF14559	TPR_19	0.97
PF01645	Glu_synthase	0.97
PF02371	Transposase_20	0.97
PF06718	DUF1203	0.97
PF13620	CarboxypepD_reg	0.97
PF06628	Catalase-rel	0.97
PF00578	AhpC-TSA	0.97
PF08281	Sigma70_r4_2	0.97
PF14833	NAD_binding_11	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.94
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.94
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.97
COG0339	Zn-dependent oligopeptidase, M3 family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0753	Catalase	Inorganic ion transport and metabolism [P]	0.97
COG1164	Oligoendopeptidase F	Amino acid transport and metabolism [E]	0.97
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.97
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.26 %
Unclassified	root	N/A	8.74 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.26 %
Unclassified	root	N/A	8.74 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.26 %
Unclassified	root	N/A	8.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	71.84 %
Unclassified	root	N/A	8.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.91 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.74 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	4.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.91 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.97 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.97 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.97 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.74 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.91 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	2.91 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.94 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.97 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2.91 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.94 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.97 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.97 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2.91 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	1.94 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.97 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.97 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.74 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.91 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	2.91 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.94 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.97 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.97 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	0.97 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16959447	All Organisms → cellular organisms → Bacteria	16108	Open in IMG/M
2170459014\|G1P06HT02HWLZV	Not Available	693	Open in IMG/M
2228664021\|ICCgaii200_c0834090	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
2228664022\|INPgaii200_c0883516	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101497060	All Organisms → cellular organisms → Bacteria → Acidobacteria	1183	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104436441	All Organisms → cellular organisms → Bacteria → Acidobacteria	530	Open in IMG/M
3300000559\|F14TC_101717110	All Organisms → cellular organisms → Bacteria → Acidobacteria	2570	Open in IMG/M
3300000787\|JGI11643J11755_11532721	All Organisms → cellular organisms → Bacteria → Acidobacteria	728	Open in IMG/M
3300000789\|JGI1027J11758_12345769	All Organisms → cellular organisms → Bacteria → Acidobacteria	672	Open in IMG/M
3300000789\|JGI1027J11758_12476107	Not Available	605	Open in IMG/M
3300000953\|JGI11615J12901_10290171	All Organisms → cellular organisms → Bacteria → Acidobacteria	2114	Open in IMG/M
3300000955\|JGI1027J12803_101306550	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300000956\|JGI10216J12902_106018706	All Organisms → cellular organisms → Bacteria → Acidobacteria	1034	Open in IMG/M
3300000956\|JGI10216J12902_110757321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1118	Open in IMG/M
3300000956\|JGI10216J12902_115364235	All Organisms → cellular organisms → Bacteria → Acidobacteria	885	Open in IMG/M
3300001116\|JGI12627J13344_100433	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	7840	Open in IMG/M
3300005330\|Ga0070690_100622480	All Organisms → cellular organisms → Bacteria → Acidobacteria	821	Open in IMG/M
3300005332\|Ga0066388_100108888	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	3260	Open in IMG/M
3300005332\|Ga0066388_101637857	All Organisms → cellular organisms → Bacteria → Acidobacteria	1135	Open in IMG/M
3300005332\|Ga0066388_105694953	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300005355\|Ga0070671_100012101	All Organisms → cellular organisms → Bacteria	6943	Open in IMG/M
3300005444\|Ga0070694_100124628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1853	Open in IMG/M
3300005445\|Ga0070708_101485204	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300005467\|Ga0070706_100435063	All Organisms → cellular organisms → Bacteria → Acidobacteria	1221	Open in IMG/M
3300005467\|Ga0070706_100913452	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300005468\|Ga0070707_101505545	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300005536\|Ga0070697_101397509	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300005539\|Ga0068853_101426353	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300005546\|Ga0070696_101322453	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300005546\|Ga0070696_101346204	All Organisms → cellular organisms → Bacteria → Acidobacteria	607	Open in IMG/M
3300005563\|Ga0068855_101259341	All Organisms → cellular organisms → Bacteria → Acidobacteria	767	Open in IMG/M
3300005563\|Ga0068855_101325278	Not Available	744	Open in IMG/M
3300005616\|Ga0068852_102404041	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300006169\|Ga0082029_1129069	All Organisms → cellular organisms → Bacteria → Acidobacteria	1017	Open in IMG/M
3300006358\|Ga0068871_101517110	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300006796\|Ga0066665_10297915	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300006852\|Ga0075433_11189953	All Organisms → cellular organisms → Bacteria → Acidobacteria	662	Open in IMG/M
3300006854\|Ga0075425_100217966	All Organisms → cellular organisms → Bacteria → Acidobacteria	2195	Open in IMG/M
3300006854\|Ga0075425_102159862	All Organisms → cellular organisms → Bacteria → Acidobacteria	621	Open in IMG/M
3300006871\|Ga0075434_100396459	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300006880\|Ga0075429_101786649	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300009012\|Ga0066710_100134174	All Organisms → cellular organisms → Bacteria	3405	Open in IMG/M
3300009088\|Ga0099830_10867723	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	746	Open in IMG/M
3300009089\|Ga0099828_11046783	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300009090\|Ga0099827_10142280	All Organisms → cellular organisms → Bacteria → Acidobacteria	1955	Open in IMG/M
3300009090\|Ga0099827_11668770	Not Available	555	Open in IMG/M
3300009094\|Ga0111539_11422235	All Organisms → cellular organisms → Bacteria → Acidobacteria	804	Open in IMG/M
3300009137\|Ga0066709_100582620	All Organisms → cellular organisms → Bacteria → Acidobacteria	1591	Open in IMG/M
3300009147\|Ga0114129_10039746	All Organisms → cellular organisms → Bacteria	6635	Open in IMG/M
3300009147\|Ga0114129_10425965	All Organisms → cellular organisms → Bacteria → Acidobacteria	1745	Open in IMG/M
3300009147\|Ga0114129_10848478	All Organisms → cellular organisms → Bacteria → Acidobacteria	1161	Open in IMG/M
3300009156\|Ga0111538_11373455	All Organisms → cellular organisms → Bacteria → Acidobacteria	891	Open in IMG/M
3300009162\|Ga0075423_10482320	All Organisms → cellular organisms → Bacteria → Acidobacteria	1304	Open in IMG/M
3300009162\|Ga0075423_10841697	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300009545\|Ga0105237_10927727	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	878	Open in IMG/M
3300010046\|Ga0126384_10470299	All Organisms → cellular organisms → Bacteria → Acidobacteria	1078	Open in IMG/M
3300010047\|Ga0126382_10810737	All Organisms → cellular organisms → Bacteria → Acidobacteria	799	Open in IMG/M
3300010359\|Ga0126376_10075020	All Organisms → cellular organisms → Bacteria → Acidobacteria	2491	Open in IMG/M
3300010359\|Ga0126376_10892788	All Organisms → cellular organisms → Bacteria → Acidobacteria	878	Open in IMG/M
3300010362\|Ga0126377_11861278	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300010373\|Ga0134128_11176353	All Organisms → cellular organisms → Bacteria → Acidobacteria	846	Open in IMG/M
3300010375\|Ga0105239_10295130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1825	Open in IMG/M
3300010398\|Ga0126383_11833464	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	695	Open in IMG/M
3300012199\|Ga0137383_10349929	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300012207\|Ga0137381_10434280	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300012210\|Ga0137378_10429743	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300012349\|Ga0137387_11026214	All Organisms → cellular organisms → Bacteria → Acidobacteria	591	Open in IMG/M
3300012350\|Ga0137372_10756464	All Organisms → cellular organisms → Bacteria → Acidobacteria	700	Open in IMG/M
3300012351\|Ga0137386_10385457	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300012469\|Ga0150984_105323766	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300012509\|Ga0157334_1082589	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300012918\|Ga0137396_10860515	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300012948\|Ga0126375_10159898	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300012948\|Ga0126375_10169749	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1398	Open in IMG/M
3300012948\|Ga0126375_11744792	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300012948\|Ga0126375_11991131	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300012958\|Ga0164299_10218728	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300012976\|Ga0134076_10491250	Not Available	559	Open in IMG/M
3300013297\|Ga0157378_11643149	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300014325\|Ga0163163_10649148	All Organisms → cellular organisms → Bacteria → Acidobacteria	1119	Open in IMG/M
3300014325\|Ga0163163_12597499	Not Available	564	Open in IMG/M
3300014968\|Ga0157379_10829828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	874	Open in IMG/M
3300014969\|Ga0157376_10912402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	897	Open in IMG/M
3300015371\|Ga0132258_10772255	All Organisms → cellular organisms → Bacteria → Acidobacteria	2421	Open in IMG/M
3300015371\|Ga0132258_11975712	All Organisms → cellular organisms → Bacteria → Acidobacteria	1468	Open in IMG/M
3300015372\|Ga0132256_101071616	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300015372\|Ga0132256_102366288	All Organisms → cellular organisms → Bacteria → Acidobacteria	634	Open in IMG/M
3300015373\|Ga0132257_103405241	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300017792\|Ga0163161_10428762	All Organisms → cellular organisms → Bacteria → Acidobacteria	1065	Open in IMG/M
3300025910\|Ga0207684_10308823	All Organisms → cellular organisms → Bacteria → Acidobacteria	1363	Open in IMG/M
3300025910\|Ga0207684_10555870	Not Available	982	Open in IMG/M
3300025923\|Ga0207681_11342706	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300025931\|Ga0207644_10047692	All Organisms → cellular organisms → Bacteria	3058	Open in IMG/M
3300025932\|Ga0207690_11679849	Not Available	530	Open in IMG/M
3300026041\|Ga0207639_11298222	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300026538\|Ga0209056_10322159	All Organisms → cellular organisms → Bacteria → Acidobacteria	1044	Open in IMG/M
3300027266\|Ga0209215_1000111	All Organisms → cellular organisms → Bacteria	34110	Open in IMG/M
3300027873\|Ga0209814_10305245	All Organisms → cellular organisms → Bacteria → Acidobacteria	693	Open in IMG/M
3300027882\|Ga0209590_10588590	Not Available	716	Open in IMG/M
3300031716\|Ga0310813_10209655	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1602	Open in IMG/M
3300032180\|Ga0307471_103727067	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300032205\|Ga0307472_101982481	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300033412\|Ga0310810_11087220	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.11%
Host-Associated	Host-Associated	35.92%
Engineered	Engineered	0.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.11%
Plants	Host-Associated → Plants	35.92%
Solid Waste	Engineered → Solid Waste	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.74%
Roots	Host-Associated → Plants → Roots	2.91%
Grass	Engineered → Solid Waste → Grass	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.48%
Loam	Environmental → Terrestrial → Soil → Loam	16.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.91%
Composting	Engineered → Solid Waste → Grass → Composting	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.65%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.71%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.97%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2170459014	Litter degradation PV2	Engineered	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001116	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03441120	2088090014	Soil	MKRMFDLPIWVIGLLGLLVAVWQSMAFLGARDPHSGVPDIMAGLSHLWWAVGAAIISIVCVVAYFVRHPRVEEEIHISR
2PV_03060650	2170459014	Switchgrass, Maize And Mischanthus Litter	MKSVNELPILVIGLLGIGVALWQAIAFLGGPSIPRTGIPDIMAGVNHLWVGQVCGSWIVAIVCVVIVFRSP
ICCgaii200_08340901	2228664021	Soil	MKSLTELPIFVIGLLGIAVAIWKSMAFLGARDPATGVPDMMHGVNNLWWAIAGVVVAIVCVVMYFVRHPRVQEEIHISR
INPgaii200_08835161	2228664022	Soil	MKSVAELPILVIGLLGIAVAIWQSLAFLGARDPQGIPDMMAGLNHLWWAIAGVAVTILCVVIYFVRHPRVQEEIHISR
INPhiseqgaiiFebDRAFT_1014970601	3300000364	Soil	MKRMFDLPIWVIGLLGLLVAVWQSMAFLGARDPHSGVPDIMAGLSHLWWAVGAAIISIVCVVAYFVRHPRVEEEIHISR*
INPhiseqgaiiFebDRAFT_1044364412	3300000364	Soil	MIVAVWQAMAFLGAKDPHSGVPDLMTGXTHLWLAIGGAIISIVCAVAYFVRHPRVEEEIHISR*
F14TC_1017171103	3300000559	Soil	MKSVTELPIFVIGLLGIAVAIWQSLAFLGARDPATGVPDLMAGVNNLWWAIAGLVVTIVCVVMYFVRHPRIQEEIHISR*
JGI11643J11755_115327211	3300000787	Soil	MKSLTELPIFVIGLLGIAVAIWKSMAFLGARDPATGVPDMMHGVNNLWWAIAGIVVAIVCVVMYFVRHPRVQEEIHISR*
JGI1027J11758_123457691	3300000789	Soil	MKSVNELPILIIGXLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGLIVAILCVVIYFVRHPRVQEEIHISR*
JGI1027J11758_124761071	3300000789	Soil	MKRMFDLPIWVIGLLGLLVAVWQSMAFLGARDPHSGVPDIMAGLSHLWWAVGAAIISIVCVVAYFVRHPR
JGI11615J12901_102901712	3300000953	Soil	MKTVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVIVAIMCVVIYFVRHPRVQEEIHISR*
JGI1027J12803_1013065503	3300000955	Soil	LLGIAVAIWQSLAFLGARDPQGIPDMMAGLNHLWWAIAGVAVTILCVVIYFVRHPRVQEEIHISR*
JGI10216J12902_1060187061	3300000956	Soil	MKSLTELPIFVIGLLGIAVALWKSIAFLSARDPATGVPDMMHGLHNLWWAIAGVVVAIVCVVVYFVRHPRVQEEIHISR*
JGI10216J12902_1107573212	3300000956	Soil	MKSVIELPILVIGLLGITVAIWQSIAFLGARDPRSGIPYMMAGLNHLWWAIAGVVVTILCVVIYFVRHPRVQEEIHISR*
JGI10216J12902_1153642352	3300000956	Soil	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVAIMCVVIYFVRHPRVQEEIHISR*
JGI12627J13344_1004334	3300001116	Forest Soil	MKSVTELPIFVIGLLGITIAIWKSMAFLGARDPQTGIPDMMHGLHNLWWAIAGIVVAIACVVLYFVRHPRIQEEIHISR*
Ga0070690_1006224802	3300005330	Switchgrass Rhizosphere	MKRMIDLPIWLIGLLGLVVAVWQSMAFLGSKDPHSGIPDIMAGLTHLWWAVGAAIVSIVCVVAYFVRHPRIEEEIHISR*
Ga0066388_1001088884	3300005332	Tropical Forest Soil	MKSVNELPILVIGLLGIGIALWQAIAFLGARDPRTGIPDIMAGVNHLWWAVAGVIVAIMCVVIYFVRHPRVQEEIHISR*
Ga0066388_1016378571	3300005332	Tropical Forest Soil	MKRMMDLPIFVIGLLALTVAVWKSMAFLSARDPHSGIPDLMAGVNNLWWAVGAAIIMIACVVAYFVRHPRVEEEIHISR*
Ga0066388_1056949531	3300005332	Tropical Forest Soil	LPILVIGLLGIGIALWQAIAFLGARDPLTGIPDIMAGVNHLWWAIAGVVVAIMCVVIYFVRHPRVQEEIHISR*
Ga0070671_1000121013	3300005355	Switchgrass Rhizosphere	MKSVIELPVFIIGLLGIVVALWQSLAFLGARDPRTGIPDMMFGVNHLWWAVAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0070694_1001246283	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MKNVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0070708_1014852041	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKSVLDMPICVIGLLGITVAVWQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR*
Ga0070706_1004350631	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKNVLDMPICVIGLLGITVAIYQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR*
Ga0070706_1009134522	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MKSVIEMPIWVIGLFGITAAAWQLMAFLGAKDPQTGIPNMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR*
Ga0070707_1015055452	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKNVLDMPICVIGLLGITVAICQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR*
Ga0070697_1013975092	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKSLLDMPIFIVGLLGIAIAVWQSMAFLGARDPAGIPDMMAGVNHLWWAIGAAIIATLCAVLYFVRHPRIEEEIHISK*
Ga0068853_1014263532	3300005539	Corn Rhizosphere	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0070696_1013224531	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKRMIDLPIYVVGLLGLIVAVWQSMAFLGARDPHSGVPDIMSGLSHLWWAVGAAIITIACVVVYFIRHPRVEEEIHISR*
Ga0070696_1013462041	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKSVNELSIVVLGLLGIALAIWKSLAFLGARDPQTGIPDMMAGVNHLWWAVAGVVVTIVCVVLHFVRHPRVQEEIHI
Ga0068855_1012593411	3300005563	Corn Rhizosphere	MKSVNELPILIIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVIVAILCVVIYFVRHPRVQEEIHISR*
Ga0068855_1013252782	3300005563	Corn Rhizosphere	MKRMIDLPIWFIGLLGLVVAVWQSMAFLGSKDPHSGVPDIMAGLTHLWWAVGAAIVSIVCVVAYFVRHP
Ga0068852_1024040412	3300005616	Corn Rhizosphere	MKSVNELSIVVLGLLGIALAIWKSLAFLGARDPQTGIPDMMAGVNHLWWAVAGVVVTIVCVVLHFVRHPRVQE
Ga0082029_11290692	3300006169	Termite Nest	MKNLNDIPIFVLGLLGIALAIWKSISFLQARDPGTGVPDLMAGVHNLWWAIAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0068871_1015171102	3300006358	Miscanthus Rhizosphere	MKSVIELPVLIIGLLGIVLAIWQSLTFLGARDPQTGIPDMMAGTNHLWWAIAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0066665_102979153	3300006796	Soil	MKSVLDMPICVIGLLGITVAVYQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVE
Ga0075433_111899532	3300006852	Populus Rhizosphere	MRRMIDLPIWFIGLLGLIVAAWQSMAFLGAKDPHSGVPDIMAGLNHLWWAAGAAIITIVCVVAYFVRHPRVEEEIHISR*
Ga0075425_1002179661	3300006854	Populus Rhizosphere	MIDLPIWFIGLLGLIVAAWQSMAFLGAKDPHSGVPDIMAGLNHLWWAAGAAIITIVCVVAYFVRHPRVEEEIHISR*
Ga0075425_1021598622	3300006854	Populus Rhizosphere	MRRMIDLPIWFIGLLGLIVAVWQSMAFLGAKDPHSGVPDIMAGLNHLWWAAGGAIITIVCVVAYFVRHPRIEEEIHISR*
Ga0075434_1003964592	3300006871	Populus Rhizosphere	MKRMGDLPIYVIGLLALIVAVWKAMAFLGARDPHSGVPDIMAGLNHLWWAVGAAIISIACVVAYFIRHPRVEEEIHISR*
Ga0075429_1017866491	3300006880	Populus Rhizosphere	VTRRIEGGTKMKRMGDLPIYVIGLLALIVAVWKAMAFLGARDPHSGVPDIMAGLNHLWWAVGAAIISIACVVAYFIRHPRVEEEIHISR*
Ga0066710_1001341742	3300009012	Grasslands Soil	MKSVIEMPIWVIGLIGITAAAWQLMAFLGAKDPQTGIPDMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR
Ga0099830_108677232	3300009088	Vadose Zone Soil	MKSVIEMPIWVIGLFGISAAAWQLMAFLGAKDPRTGIPDMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR*
Ga0099828_110467831	3300009089	Vadose Zone Soil	MNSTESSQALETDPGVGRYNMKSVIEMPIWVIGLIGITAAAWQLMAFLGAKDPQTGIPNMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR*
Ga0099827_101422802	3300009090	Vadose Zone Soil	MKRVLDMPICVIGLLGITVAVWQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR*
Ga0099827_116687701	3300009090	Vadose Zone Soil	MKSTEGVQALETDPGVGRYNMKSVIEMPIWVIGLFGITTAAWQLMAFLGAKDPQTGIPNMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVE*
Ga0111539_114222351	3300009094	Populus Rhizosphere	MKSVTELPIFVIGLLGIALAIWKSIAFLGARDPATGVPDLMAGVNNLWWAIAGLVVTIVCVVMYFVRHPRIQEEIHISR*
Ga0066709_1005826202	3300009137	Grasslands Soil	VFGFIELNRRYNMKSVLDMPICVIGLLGITVAVYQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR*
Ga0114129_100397463	3300009147	Populus Rhizosphere	MIDLPIWFIGLLGLIVAVWQSMAFLGAKDPHSGVPDIMAGLNHLWWAAGAAIITILCVVAYFVRHPRVEEEIHISR*
Ga0114129_104259652	3300009147	Populus Rhizosphere	MKRMIDLPICVIGLLALIVAVWKTMAFLGARDPHSGVPDLMWGLSHLWWAAGAAIISVVCIVSYFVRHPRVEEEIHISR*
Ga0114129_108484782	3300009147	Populus Rhizosphere	MKSVIEMPIWAIGLLGIAAAIWQSMAFLGARDPRTGIPDMMAGLNHLWWAIAALVVATLCVVIYFVRHPRVQEEIHISK*
Ga0111538_113734551	3300009156	Populus Rhizosphere	MKSVTELPIFVIGLLGIALAIWKSIAFLGARDPATGVPDLMAGVNNLWWAIAGIVVAIACVVMYFVRHPRVQEEIHISR*
Ga0075423_104823201	3300009162	Populus Rhizosphere	MKNVNELPILFIVLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVIVAILCVVIYFVRHPRVQEEIHISR*
Ga0075423_108416972	3300009162	Populus Rhizosphere	AGNVTRRIEGGTKMKRMGDLPIYVIGLLALIVAVWKAMAFLGARDPHSGVPDIMAGLNHLWWAVGAAIISIACVVAYFIRHPRVEEEIHISR*
Ga0105237_109277271	3300009545	Corn Rhizosphere	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVAILCVVIYFVRHPRVQEE
Ga0126384_104702991	3300010046	Tropical Forest Soil	MKSVNELPIFVIGLLGIVAALWQSIAFLGARDPQTGVPDLMAGVNHLWWAIAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0126382_108107371	3300010047	Tropical Forest Soil	MKRMTDLPIWVIGLVGLTVAVWQTMAFLGARDPHSGVPDIMSGLSHLWWAVGAAIISVGCIVAYFVRHPRVEEEIHI
Ga0126376_100750203	3300010359	Tropical Forest Soil	MKRMIDLPIWGIGLLGMTVAVWQTMAFLGARDPHSGIPDLMSGVSHLWWAVGAAIISVVCIVSYFVRHPRVEEEIHISR*
Ga0126376_108927881	3300010359	Tropical Forest Soil	MKSVNELPILVIGLLGIGIALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVAIMCVVIYFVRHPRVQEEIHISR*
Ga0126377_118612781	3300010362	Tropical Forest Soil	MKRMMDLPIFVIGLLALTVAVWKSMAFLSARDPHSGIPDLMAGVNNLWWAVGAAIIMIVCVVAYFVRHPRVEEEIHISR*
Ga0134128_111763532	3300010373	Terrestrial Soil	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVAILCVVIYFVRHPRGQEEIHISR*
Ga0105239_102951302	3300010375	Corn Rhizosphere	MKRMIDLPIWFIGLLGLVVAVWQSMAFLGSKDPHSGIPDIMAGLTHLWWAVGAAIVSIVCVVAYFVRHPRIEEEIHISR*
Ga0126383_118334641	3300010398	Tropical Forest Soil	KHETCTELEKRKGTIQGGTKMKRMIDLPLWIIGLVGLTVAVWQTMAFLGARDPHSGVPDIMSGLSHLWWAVGAAIISVVCIVAYFVRHPRVEEEIHISR*
Ga0137383_103499291	3300012199	Vadose Zone Soil	MKSADSVQALETDLGVGRYNMKSVIEMPIWVIGLIGITAAAWQLMAFLGAKDPQTGIPDMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR*
Ga0137381_104342802	3300012207	Vadose Zone Soil	PIWVIGLFGISTAAWQLMAFLGAKDPQTGIPNMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR*
Ga0137378_104297432	3300012210	Vadose Zone Soil	MKSADSVQALETDLGVGRYNMKSVIEMPIWVIGLIGITAAAWQLMAFLGAKDPQTGIPDMMAGLNHLWWAIGALIIATLCVVIYFVRHPRVEEEIHISR*
Ga0137387_110262141	3300012349	Vadose Zone Soil	LYLHAGHTISKTAINLSAAVFGFIELNGGYNMKNVLDMPICVIGLLGITVAVYQSMAFLGAKDPGTGIPDMMAGVNHLWWAIGAAIIAILCVVLYFVRHPRVEEEIHISR*
Ga0137372_107564641	3300012350	Vadose Zone Soil	MKYADSVQALETDLGVGRYNMKSVIEMPIWVIGLIGITAAAWQLMAFLGAKDPQTGIPDMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR*
Ga0137386_103854572	3300012351	Vadose Zone Soil	VSARHQLAALSNEMKSADSVQALETDLGVGRYNMKSVIEMPIWVIGLIGITAAAWQLMAFLGAKDPQTGIPDMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR*
Ga0150984_1053237661	3300012469	Avena Fatua Rhizosphere	MKSVIELPILGIGLLGIVVALWQSISFLGARDPQTGIPDSMAGVNHLWWAIAGVFVAILCVVIYFVRHPRVQEEIHISR*
Ga0157334_10825891	3300012509	Soil	MKSVIELPILGIGLLGIVVALWQSISFLGARDPQTGIPDLMAGVNHLWWAIAGVVVAILSVVIYFVRHPRVQEEIHISR*
Ga0137396_108605152	3300012918	Vadose Zone Soil	MKCTEGVQAPETNPGVGRYNMKSVIEMPIWVIGLFGITAAAWQLMAFLGAKDPRTGIPDMMAGLNHLWWAIGGAIIATLCVVIYFVRHPRVEEEIHISR*
Ga0126375_101598983	3300012948	Tropical Forest Soil	MKRMSDLPIWVIGVLGLMVAVWQTMAFLGARDPQSGVPDIMSGLGHLWWAVGAAIISVICIVTYFVRHPRVEEEIHISR*
Ga0126375_101697492	3300012948	Tropical Forest Soil	MKSLNEVPIFVLGLLGIVVALWQSVVFLGARDPQTGIPDLMAGVNHLWGAIAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0126375_117447921	3300012948	Tropical Forest Soil	IGLLGLVLAVWQAMVFLGARDPHYGNPDLMLGAGHLWWAILGAVISIACVVAYFVRHPRVEEEIHISR*
Ga0126375_119911311	3300012948	Tropical Forest Soil	MKRMIDLPIWGIGLLGLTVAVWQTMAFLGTRDPHLGIPDLMSGVSHLWWAVGAAIISVVCIVSYFVRHPRVEEEIHISR*
Ga0164299_102187282	3300012958	Soil	MKNVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVATLCVVIYFVRHPRVQEEIHISR*
Ga0134076_104912501	3300012976	Grasslands Soil	MKRMIDLPIWVIGLLGLIVAVWQSIAFLGARDPHTRVPDIMAGLSHLWWSLGAAIVSIVCVVAYF
Ga0157378_116431491	3300013297	Miscanthus Rhizosphere	MKSVIELPILGIGLLGIVVALWQSISFLGARDPQTGIPDLMAGVNHLWWAIAGVVVAILCVVIYFVRHPRVQEEIHISR*
Ga0163163_106491482	3300014325	Switchgrass Rhizosphere	MKSLNELPIFVIGLLGIAVAIWKSIAFLGARDPATGIPDMMHGLSNLWWAIAGVVVAIVCVVMYFVRHPRVQEEIHISR*
Ga0163163_125974992	3300014325	Switchgrass Rhizosphere	MKSLTELPIFVIGLLGIAVAIWKSMAFLGARDPATGVPDMMHGVNNLWWAIAGVVVAIVCVVMYFVRHPRVQEE
Ga0157379_108298281	3300014968	Switchgrass Rhizosphere	MKRMIDLPIWLIGLLGLVVAVWQSMAFLGSKDPHSGIPDIMAGLTHLWWAVGAAIVSIVCVVA
Ga0157376_109124021	3300014969	Miscanthus Rhizosphere	MKRMIDLPIWFIGLLGLVVAVWQSMAFLGSKDPHSGIPDIMAGLTHLWWAVGAAIVSIVCVVAYFVRHPR
Ga0132258_107722554	3300015371	Arabidopsis Rhizosphere	MKPITDLPIFGIGLLALTVAVWKSMAFLSARDPHSGVPDLMVGVNNLWWAVGAAVIMVGCVVAYFVRHPRVEEEIHISR*
Ga0132258_119757122	3300015371	Arabidopsis Rhizosphere	MKSLIEMPIWAIGLLGIAAAIWQSMAFLGARDPVTGIPDMMAGVNHLWWAIAALVVTTLCVVIYFVRHPRVQEEIHISR*
Ga0132256_1010716161	3300015372	Arabidopsis Rhizosphere	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVIVAILCVVIYFVRHPRVQEEIHISR*
Ga0132256_1023662881	3300015372	Arabidopsis Rhizosphere	IEMPIWAIGLLGIAAAIWQSMAFLGARDPVTGIPDMMAGVNHLWWAIAALVVTTLCVVIYFVRHPRVQEEIHISR*
Ga0132257_1034052411	3300015373	Arabidopsis Rhizosphere	MKSLTELPIFVIGLLGIAVAIWKSMAFLGARDPQTGIPDMMHGVNNLWWAIAGVVVAIACVVMYFVRHPRVQEEIHISR*
Ga0163161_104287621	3300017792	Switchgrass Rhizosphere	MKRMIDLPIWFIGLLGLVVAVWQSMAFLGSKDPHSGIPDIMAGLTHLWWAVWAALVSIVFVVGYFVRHPRIEEEIHISR
Ga0207684_103088231	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKNVLDMPICVIGLLGITVAIYQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR
Ga0207684_105558701	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKSVIEMPIWVIGLFGITTAAWQLMAFLGAKDPQTGIPNMMAGLNHLWWAIGAVIIATLCVVIYFVRHPRVEEEIHISR
Ga0207681_113427061	3300025923	Switchgrass Rhizosphere	MKRMIDLPIWLIGLLGLVVAVWQSMAFLGSKDPHSGIPDIMAGLTHLWWAVGAAIVSIVCVVAYFVRHPRIEEEIHISR
Ga0207644_100476923	3300025931	Switchgrass Rhizosphere	MKSVIELPVFIIGLLGIVVALWQSLAFLGARDPRTGIPDMMFGVNHLWWAVAGVVVAILCVVIYFVRHPRVQEEIHISR
Ga0207690_116798491	3300025932	Corn Rhizosphere	MKRMIDLPIWFIGLLGLVVAVWQSMAFLGSKDPHSGVPDIMAGLTHLWWAVGAAIVSIVCVVAYFVRHPRIEEEIHISR
Ga0207639_112982221	3300026041	Corn Rhizosphere	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVVVAILCVVIYFVRHPRVQEEIHISR
Ga0209056_103221592	3300026538	Soil	MKSVLDMPICVIGLLGITVAVYQSMAFLGAKDPSTGIPDMMAGVNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR
Ga0209215_100011128	3300027266	Forest Soil	MKSVTELPIFVIGLLGITIAIWKSMAFLGARDPQTGIPDMMHGLHNLWWAIAGIVVAIACVVLYFVRHPRIQEEIHISR
Ga0209814_103052451	3300027873	Populus Rhizosphere	MRRMIDLPIWFIGLLGLIVAAWQSMAFLGAKDPHSGVPDIMAGLNHLWWAAGAAIITILCVVAYFVRHPRVEEEIHISR
Ga0209590_105885902	3300027882	Vadose Zone Soil	MKSVIEMPIWLIGLFGITTAAWQLMAFLGAKDPQTGIPNMMAGLNHLWWAIGAAIIATLCVVLYFVRHPRVEEEIHISR
Ga0310813_102096551	3300031716	Soil	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVAVAILCVVMYFVRHPRVQEEIHISR
Ga0307471_1037270671	3300032180	Hardwood Forest Soil	TIMKRMFDLPIWVIGLLGLMVAVWQSMAFLGARDPHSGVPDIMAGLSHLWWAVGAAIISIVCVVAYFVRHPRVEEEIHISR
Ga0307472_1019824811	3300032205	Hardwood Forest Soil	MKSLIEMPIWAIGLLGIAAAIWQSMAFLGARDPRTGVPDMMAGLNHLWWAIAALVVATLCVVIYFVRHPRVQEEIHISR
Ga0310810_110872201	3300033412	Soil	MKSVNELPILVIGLLGIGVALWQAIAFLGARDPRTGIPDIMAGVNHLWWAIAGVIVAILCVVMYFVRHPRVQEEIHISR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099833

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences