Metagenome / Metatranscriptome Family F099829

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099829
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	62 residues
Representative Sequence	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLFLTGIGLLSLAQLGRPRSQ
Number of Associated Samples	91
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.47 %
% of genes near scaffold ends (potentially truncated)	30.10 %
% of genes from short scaffolds (< 2000 bps)	82.52 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.175 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (8.738 % of family members)
Environment Ontology (ENVO)	Unclassified (27.184 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (36.893 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF02625	XdhC_CoxI	36.89
PF05762	VWA_CoxE	31.07
PF13478	XdhC_C	16.50
PF03450	CO_deh_flav_C	1.94
PF12804	NTP_transf_3	0.97
PF09347	DUF1989	0.97
PF04357	TamB	0.97
PF01145	Band_7	0.97
PF07728	AAA_5	0.97
PF01592	NifU_N	0.97
PF00266	Aminotran_5	0.97
PF01048	PNP_UDP_1	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1975	Molybdoenzyme maturation factor PaoD (Mo cofactor insertion), XdhC/CoxF family	Posttranslational modification, protein turnover, chaperones [O]	36.89
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.97
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.97
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.97
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.17 %
Unclassified	root	N/A	5.83 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	42.72 %
Unclassified	root	N/A	5.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	42.72 %
Unclassified	root	N/A	5.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	42.72 %
Unclassified	root	N/A	5.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	40.78 %
Unclassified	root	N/A	5.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	40.78 %
Unclassified	root	N/A	5.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	4.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11442329	Not Available	524	Open in IMG/M
3300003267\|soilL1_10135763	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300004114\|Ga0062593_100001032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	8940	Open in IMG/M
3300004114\|Ga0062593_100095266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2075	Open in IMG/M
3300004153\|Ga0063455_101465999	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300004463\|Ga0063356_100119059	All Organisms → cellular organisms → Bacteria	2924	Open in IMG/M
3300005093\|Ga0062594_100287413	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300005177\|Ga0066690_10059424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2357	Open in IMG/M
3300005181\|Ga0066678_10219655	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300005328\|Ga0070676_10086496	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300005331\|Ga0070670_100839043	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300005332\|Ga0066388_100036459	All Organisms → cellular organisms → Bacteria	4760	Open in IMG/M
3300005332\|Ga0066388_100251624	All Organisms → cellular organisms → Bacteria	2406	Open in IMG/M
3300005334\|Ga0068869_100756933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	832	Open in IMG/M
3300005339\|Ga0070660_100347439	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300005345\|Ga0070692_10330199	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	941	Open in IMG/M
3300005365\|Ga0070688_101618120	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	529	Open in IMG/M
3300005444\|Ga0070694_100202630	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1480	Open in IMG/M
3300005552\|Ga0066701_10351505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	913	Open in IMG/M
3300005558\|Ga0066698_10577270	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300005569\|Ga0066705_10582228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	689	Open in IMG/M
3300005577\|Ga0068857_100804142	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300006032\|Ga0066696_10087754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1842	Open in IMG/M
3300006169\|Ga0082029_1431343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	798	Open in IMG/M
3300006173\|Ga0070716_100923593	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300006755\|Ga0079222_10353592	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300006844\|Ga0075428_100107309	All Organisms → cellular organisms → Bacteria	3044	Open in IMG/M
3300006844\|Ga0075428_101319249	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300006852\|Ga0075433_10267696	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
3300006854\|Ga0075425_101509271	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300006903\|Ga0075426_10034232	All Organisms → cellular organisms → Bacteria	3631	Open in IMG/M
3300006903\|Ga0075426_11416928	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300006914\|Ga0075436_100845295	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	683	Open in IMG/M
3300006954\|Ga0079219_10071447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1590	Open in IMG/M
3300007004\|Ga0079218_10204310	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1511	Open in IMG/M
3300010335\|Ga0134063_10206183	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	926	Open in IMG/M
3300010362\|Ga0126377_11975168	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	659	Open in IMG/M
3300010371\|Ga0134125_10826953	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1018	Open in IMG/M
3300010397\|Ga0134124_13140635	Not Available	506	Open in IMG/M
3300012212\|Ga0150985_114259350	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	816	Open in IMG/M
3300012685\|Ga0137397_10017517	All Organisms → cellular organisms → Bacteria	5012	Open in IMG/M
3300012685\|Ga0137397_10520792	All Organisms → cellular organisms → Bacteria	886	Open in IMG/M
3300012922\|Ga0137394_10040815	All Organisms → cellular organisms → Bacteria	3803	Open in IMG/M
3300012927\|Ga0137416_11022048	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	739	Open in IMG/M
3300012929\|Ga0137404_11968057	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	545	Open in IMG/M
3300012976\|Ga0134076_10464098	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300012986\|Ga0164304_10507194	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300014271\|Ga0075326_1298738	Not Available	504	Open in IMG/M
3300014320\|Ga0075342_1237188	Not Available	526	Open in IMG/M
3300015371\|Ga0132258_10834671	All Organisms → cellular organisms → Bacteria	2325	Open in IMG/M
3300018000\|Ga0184604_10037144	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1276	Open in IMG/M
3300018027\|Ga0184605_10039988	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
3300018422\|Ga0190265_13632540	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	514	Open in IMG/M
3300018468\|Ga0066662_11511736	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300019279\|Ga0184642_1063968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	557	Open in IMG/M
3300019882\|Ga0193713_1137492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	664	Open in IMG/M
3300025313\|Ga0209431_10059762	All Organisms → cellular organisms → Bacteria	2964	Open in IMG/M
3300025318\|Ga0209519_10261191	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1011	Open in IMG/M
3300025318\|Ga0209519_10379345	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	811	Open in IMG/M
3300025899\|Ga0207642_10088022	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1527	Open in IMG/M
3300025912\|Ga0207707_10164484	All Organisms → cellular organisms → Bacteria	1939	Open in IMG/M
3300025930\|Ga0207701_10234676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1604	Open in IMG/M
3300025933\|Ga0207706_11606736	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300025935\|Ga0207709_11382384	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300025936\|Ga0207670_10691975	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	843	Open in IMG/M
3300025939\|Ga0207665_10152701	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1655	Open in IMG/M
3300025942\|Ga0207689_10687330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300026118\|Ga0207675_101688844	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653	Open in IMG/M
3300026295\|Ga0209234_1170329	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300026297\|Ga0209237_1124455	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1075	Open in IMG/M
3300026298\|Ga0209236_1070804	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300027647\|Ga0214468_1149929	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300027787\|Ga0209074_10123669	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300027882\|Ga0209590_10653654	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	674	Open in IMG/M
3300027886\|Ga0209486_10562905	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	718	Open in IMG/M
3300027909\|Ga0209382_10001643	All Organisms → cellular organisms → Bacteria	34711	Open in IMG/M
3300027909\|Ga0209382_10891686	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300028536\|Ga0137415_11012264	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	642	Open in IMG/M
3300028809\|Ga0247824_10686088	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	623	Open in IMG/M
3300030006\|Ga0299907_10001831	All Organisms → cellular organisms → Bacteria	12584	Open in IMG/M
3300030006\|Ga0299907_10141804	All Organisms → cellular organisms → Bacteria	1985	Open in IMG/M
3300030006\|Ga0299907_10634741	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	826	Open in IMG/M
3300031228\|Ga0299914_10002896	All Organisms → cellular organisms → Bacteria	11971	Open in IMG/M
3300031229\|Ga0299913_10348727	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1468	Open in IMG/M
3300031548\|Ga0307408_101676243	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	605	Open in IMG/M
3300031716\|Ga0310813_10151489	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300031720\|Ga0307469_10063392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2404	Open in IMG/M
3300031720\|Ga0307469_11309981	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	688	Open in IMG/M
3300031720\|Ga0307469_12356747	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300031740\|Ga0307468_100484388	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300031820\|Ga0307473_10823323	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	664	Open in IMG/M
3300031911\|Ga0307412_10560445	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300031949\|Ga0214473_12022728	Not Available	561	Open in IMG/M
3300032012\|Ga0310902_10086552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1640	Open in IMG/M
3300032174\|Ga0307470_10736490	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300032180\|Ga0307471_101524879	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300032180\|Ga0307471_101820204	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	760	Open in IMG/M
3300033407\|Ga0214472_10386658	All Organisms → cellular organisms → Bacteria	1316	Open in IMG/M
3300033417\|Ga0214471_10254715	All Organisms → cellular organisms → Bacteria	1434	Open in IMG/M
3300033433\|Ga0326726_11324611	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300034178\|Ga0364934_0007627	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3776	Open in IMG/M
3300034664\|Ga0314786_033119	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	901	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.70%
Host-Associated	Host-Associated	23.30%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.79%
Plants	Host-Associated → Plants	23.30%
Aquatic	Environmental → Aquatic	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.77%
Sediment	Environmental → Aquatic → Sediment	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.97%
Peat	Environmental → Terrestrial → Peat	0.97%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.65%
Loam	Environmental → Terrestrial → Soil → Loam	10.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.80%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.88%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.97%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.97%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.97%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014271	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailA_D2	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300025313	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_3 (SPAdes)	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300027647	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 HiSeq	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034664	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_114423292	3300000787	Soil	MRRVVATFLVLMLAVVHAPTQAQAVVYSMFGELFPFGTTNEPGMLFLTGITLLSLAYLGRGSTR*
soilL1_101357632	3300003267	Sugarcane Root And Bulk Soil	MSRVIASIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGIGLLSLAQFGRRRPH*
Ga0062593_1000010323	3300004114	Soil	MRRVVASLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLAYVGGRSR*
Ga0062593_1000952663	3300004114	Soil	MSRIIGSIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSQ*
Ga0063455_1014659992	3300004153	Soil	MSRIIGSIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAKLGRPRSQ*
Ga0063356_1001190593	3300004463	Arabidopsis Thaliana Rhizosphere	MRRVVASLLLLLLAVVHAPTQAQAVVMSMFQDLFPFGSTNEPGMLFLTGVTLLSLAHLGRTRR*
Ga0062594_1002874132	3300005093	Soil	MSRIIGSIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSH*
Ga0066690_100594243	3300005177	Soil	IVASLALLLLAVMHAPTQAQALVFSVFGDIFPFSTSEPVMLFLTGVALLSLAQLGRPNSR
Ga0066678_102196551	3300005181	Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLVLTGIGLLSLAQLGRPRSQ*
Ga0070676_100864962	3300005328	Miscanthus Rhizosphere	MSRIIGSIALLLLAIVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSQ*
Ga0070670_1008390432	3300005331	Switchgrass Rhizosphere	MRRLVASILLLLLAVIHAPTQAQAFVFSVFGDLFPFGTNEPGMLFLTGLTLLSLAYVGRRAR*
Ga0066388_1000364592	3300005332	Tropical Forest Soil	MSRMIASIALLLLAVVHAPSQAQALMFSVFQDLLPFSTTNEPVTLFLTGIGLLSLAQLGRPRPH*
Ga0066388_1002516243	3300005332	Tropical Forest Soil	MSRIIASIALLLLAVIHGPSQAQALVFSVFQDLLPFGTTNEPITLFLTGMALLSLAQLGRPRSQ*
Ga0068869_1007569331	3300005334	Miscanthus Rhizosphere	LAIVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSH*
Ga0070660_1003474392	3300005339	Corn Rhizosphere	MRRVVASLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGLTLLSLAYVGRRTR*
Ga0070692_103301991	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSRIIASAALLMLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLILTGIGLLSLAQLGRPRSH*
Ga0070688_1016181202	3300005365	Switchgrass Rhizosphere	ASLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLAYVGGRSR*
Ga0070694_1002026303	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	AALLMLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLILTGIGLLSLAQLGRPRSH*
Ga0066701_103515051	3300005552	Soil	RAMSRIIASIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGIGLLSLAQLGRPRPR*
Ga0066698_105772702	3300005558	Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGIGLLSLAQLGR
Ga0066705_105822282	3300005569	Soil	MSRIIASVALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLFLTGVGLLSLAQLGRPRSR*
Ga0068857_1008041421	3300005577	Corn Rhizosphere	MRRLVASILLLLLAVIHAPTQAQAFVFSVFGDLFPFGTNEPGMLFLTGLTLLSLAYVGRRTR*
Ga0066696_100877543	3300006032	Soil	RIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLVLTGIGLLSLAQLGRPRSQ*
Ga0082029_14313432	3300006169	Termite Nest	MSRVIGSIALLMLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVGLLSLAQLGRRRPQ*
Ga0070716_1009235932	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSRIIASIALLLLAVVHAPTQAQALVFSVFQDLLPFSTTNEPITLFLTGVGLLSLAQLGRPRSQ*
Ga0079222_103535921	3300006755	Agricultural Soil	MSRMIASIALLLLVVVHAPTQAQALVFSVFQDLLPFSTTTEPITLFLTGVGLLSLAQVGRSRSR*
Ga0075428_1001073094	3300006844	Populus Rhizosphere	MRRVVASLLLLLLAVIHTPSQAQAVVFSVFGDLFPFGTNEPAMLFLTGVGLLSLAFLGRPAR*
Ga0075428_1013192492	3300006844	Populus Rhizosphere	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLFLTGIGLLSLAQLG
Ga0075433_102676962	3300006852	Populus Rhizosphere	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLFLTGIGLLSLAQLGRPRSQ*
Ga0075425_1015092712	3300006854	Populus Rhizosphere	MSRIIASIALLMLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVGLLSLAQLGRPRSQ*
Ga0075426_100342322	3300006903	Populus Rhizosphere	MSRIIASVALLLLAVVHAPSQAQALVFSVFQGLVPFSTTNEPITLFLTGIGLLSLAQLGRPRSR*
Ga0075426_114169282	3300006903	Populus Rhizosphere	MSRIVAPIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPR
Ga0075436_1008452952	3300006914	Populus Rhizosphere	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVGLLSLAQLGRPRSQ*
Ga0079219_100714472	3300006954	Agricultural Soil	MRRVLALILVVFLAVVHAPTPAQALVFSVLQDLFPFGTNEPGLLILTGITLLSLSQLGRRPD*
Ga0079218_102043101	3300007004	Agricultural Soil	MRRASRVLASLLVLLLAVVHAPSPAQALVFSMIQDFFPFGTNEPGMLFLTGITLLSLAYAGRPRGQ*
Ga0134063_102061831	3300010335	Grasslands Soil	EEESSAMSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLVLTGIGLLSLAQLGRPRSQ*
Ga0126377_119751681	3300010362	Tropical Forest Soil	LLAVVHAPSQAQALMFSVFQDLLPFSTTNEPVTLFLTGIGLLSLAQLGRPRPH*
Ga0134125_108269531	3300010371	Terrestrial Soil	MRRLVASLLLLMLAVILAPTQAQAVVFSVFGDLFPFGTNEPGILFLTGLTLLSLAYVGRRTR*
Ga0134124_131406351	3300010397	Terrestrial Soil	MRRLVASLLLLMLAVILAPTQAQAFVFSVFGDLFPFGTNEPGMLFLTGLTLLSLAYVGRRAR*
Ga0150985_1142593502	3300012212	Avena Fatua Rhizosphere	MSRIIASIALLMLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLA*
Ga0137397_100175172	3300012685	Vadose Zone Soil	MSRIIASIALLMLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSQ*
Ga0137397_105207922	3300012685	Vadose Zone Soil	MSRIIASVALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLFLTGVGLLSLAQLGRPRS*
Ga0137394_100408155	3300012922	Vadose Zone Soil	MSRIIASIALLMLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLLLTGVALLSLAQLGRPRSQ*
Ga0137416_110220481	3300012927	Vadose Zone Soil	LAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSQ*
Ga0137404_119680572	3300012929	Vadose Zone Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFGTTNEPITLVLTGIALLSLAQLGRPRPH*
Ga0134110_101223782	3300012975	Grasslands Soil	VMHAPTQAQALVFSVFGDIFPFSTSEPAMLFLTGIALLSLAQLGRPNSR*
Ga0134076_104640981	3300012976	Grasslands Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGIGLLSLAQ
Ga0164304_105071941	3300012986	Soil	MSRIIGSIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLILAQLGRPRSH*
Ga0075326_12987381	3300014271	Natural And Restored Wetlands	MRRILALPFLLLLAVVHTPSSAQALVFSVFQDYLALPTGEPGMLLVTGVSLLTLAQLGRPRAR*
Ga0075342_12371881	3300014320	Natural And Restored Wetlands	MRRFVVSLLLLLLAVVHAPSQAQAVVFSVFGELFPFGTNEPGMLLLTGVSLLSLAYIGQRSR*
Ga0132258_108346712	3300015371	Arabidopsis Rhizosphere	MRRVLALIMVVFLAVVHAPTPAQALVFSYLQDLFPFGTNEPGLLILTGVTLLSLSQLGRRTD*
Ga0184604_100371442	3300018000	Groundwater Sediment	MRRVVATFLLLLLAVVHAPTQAQAVVFSMFGDLFPFGTTNEPGMLFLTGITLLSLAYLGRGSSR
Ga0184605_100399883	3300018027	Groundwater Sediment	MRRALASILVLLLAVVHAPTQAQALVFSVFQDLFPFGANEPGMLFLTGLALLSLSQLGRREP
Ga0190265_136325402	3300018422	Soil	MRRASRVLASLLVLLLAVVHAPSPAQALVFSMMQDFFPFGTNEPGMLFLTGITLLSLAYAGRPRGQ
Ga0066662_115117362	3300018468	Grasslands Soil	MSRIIASIALLLLAVVHAPSQAQALAFSVFQPPLSFSPTNEPVRRSPTRLGLLTPAQLAA
Ga0184642_10639681	3300019279	Groundwater Sediment	RREGVQDMRRALASILVLLLAVVHAPTQAQALVFSVFQDLFPFGANEPGMLFLTGLALLSLSQLGRREP
Ga0193713_11374921	3300019882	Soil	VVFLAVVHTTTPAQALVFSVWQDLFPSGTNEPGLLVLTGVTLLSLSQLGRRPD
Ga0209431_100597622	3300025313	Soil	MMRVVAPLLLLLLAVVHAPTQAQALVFSVFGELFPFGTNEPGMLFLTGVTLLSLAYLGRSPR
Ga0209519_102611912	3300025318	Soil	MRQVVASLLLLLLAVVHAPTQAQAVVFSVFGELFPFGTNEPGMLFLTGVSLLSLAYLGRRPG
Ga0209519_103793452	3300025318	Soil	MSRVLASLLVLLLAVVHAPTHAQALVFSVFQDFFPFGTNEPGMLILTGVTLLSLAHLGRPRSR
Ga0207642_100880222	3300025899	Miscanthus Rhizosphere	MSRIIGSIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSH
Ga0207707_101644842	3300025912	Corn Rhizosphere	MRRVVASLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLAYVGGRSR
Ga0207701_102346763	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	SLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLAYVGGRSR
Ga0207706_116067361	3300025933	Corn Rhizosphere	MRRVVASLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLA
Ga0207709_113823842	3300025935	Miscanthus Rhizosphere	SLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGLTLLSLAYVGRRAR
Ga0207670_106919752	3300025936	Switchgrass Rhizosphere	MRRLVASILLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLAYVGGRSR
Ga0207665_101527013	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MSRIIASIALLMLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVGLLSLAQLGRPRSQ
Ga0207689_106873302	3300025942	Miscanthus Rhizosphere	MRRVLALIMVVFLAVVHAPTPAQALVFSYLQDLFPFGTNEPGLLILTGVTLLVDGGLFRGTY
Ga0207675_1016888442	3300026118	Switchgrass Rhizosphere	IGSIALLLLAIVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSQ
Ga0209234_11703292	3300026295	Grasslands Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFSTTNEPITLVLTGIGLLSLAQLGRPRSQ
Ga0209237_11244552	3300026297	Grasslands Soil	LLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGIGLLSLAQLGRPRSR
Ga0209236_10708042	3300026298	Grasslands Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGIGLLSLAQLGRPRSR
Ga0214468_11499292	3300027647	Soil	MRRVVASLLLLLLAVVHAPTQAQAVVFSVFGDLFPFSTNEPGMLFLTGVSLLSLAYLGRRPR
Ga0209074_101236692	3300027787	Agricultural Soil	MRRVLALILVVFLAVVHAPTPAQALVFSVLQDLFPFGTNEPGLLILTGITLLSLSQLGRRPD
Ga0209590_106536541	3300027882	Vadose Zone Soil	GGDHSGGLALLLLAVTHAPTQAQALVFSVFGDIFPFSTNEPVMLFLTGVALLSLAQVGRPRSR
Ga0209486_105629052	3300027886	Agricultural Soil	MRRASRVLASLLVLLLAVVHAPSPAQALVFSMIQDFFPFGTNEPGMLFLTGITLLSLAYAGRPRGQ
Ga0209382_1000164318	3300027909	Populus Rhizosphere	MRRVVASLLLLLLAVIHTPSQAQAVVFSVFGDLFPFGTNEPAMLFLTGVGLLSLAFLGRPAR
Ga0209382_108916862	3300027909	Populus Rhizosphere	MRRVVASLLLLLLAVVHAPTQAQAVVMSMFQDLFPFGSTNEPGMLFLTGVTLLSLAHLGRTRR
Ga0137415_110122642	3300028536	Vadose Zone Soil	LAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVALLSLAQLGRPRSQ
Ga0247824_106860882	3300028809	Soil	MRRVVASLLLLLLAVVHAPTPAQAVVMSMFQDLFPFGSTNEPGMLFLTGVTLLSLAHLGRTRR
Ga0299907_1000183110	3300030006	Soil	MRRVVASLLLLLLAVVHAPTQAQAVVFSVFGELFPFGTNEPGMLFLTGVSLLSLAYLGRRPG
Ga0299907_101418043	3300030006	Soil	MRRILALPFLLLLAVVHTPSSAQALVFSVFQDYLALPTGEPGMLLVTGVSLLTLAQLGRPRAR
Ga0299907_106347411	3300030006	Soil	QEMRRVFVSLLLLLLAVVHAPTQAQAVVFSVFGELFPFGTNEPGMLLLTGVSLLSLAYIGHRSR
Ga0299914_100028968	3300031228	Soil	MRRVVASLLLLLLAVVHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVSLLSLAYLGRRPR
Ga0299913_103487272	3300031229	Soil	GIVPREESRQMRRVVASLLLLLLAVVHAPTQAQAVVFSVFGELFPFGTNEPGMLFLTGVSLLSLAYLGRRPG
Ga0307408_1016762432	3300031548	Rhizosphere	MRRVVAPILLLLLAVVHAPTQAQAFVFSMFQDLFPFGSTNEPGMLFLTGVTLLSLAYLGRSPR
Ga0310813_101514892	3300031716	Soil	MRRVLALIMVVFLAVVHAPTPAQALVFSYLQDLFPFGTNEPGLLILTGVTLLSLSQLGRRTD
Ga0307469_100633923	3300031720	Hardwood Forest Soil	MSRIIASIALLMLAVVHAPTQAQALVFSVFQDLLPFSTTNEPITLFLTGVGLLSLAQLGRPRSQ
Ga0307469_113099811	3300031720	Hardwood Forest Soil	MSRVIASLALLMLVVVHAPSQAQALVFSMFQDLLPFSTTNEPITLFLTGIALLSLAQLGRPRTR
Ga0307469_123567471	3300031720	Hardwood Forest Soil	EEESRAMSRIVASLALLLLAVMHAPTQAQALVFSVFGDIFPFSTSEPVMLFLTGVALLSLAQLGRPNSR
Ga0307468_1004843881	3300031740	Hardwood Forest Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFGTTNEPITLFLTGIALLSLAQLGRPRSQ
Ga0307473_108233231	3300031820	Hardwood Forest Soil	SLALRLLVVMHGPTQAQALVFSVFGDLFPLTTSEPAMLFLTGVALLSHAQFGRPNSR
Ga0307412_105604451	3300031911	Rhizosphere	MRRASRVLASLLVLLLAVVHAPSPAQALVFSMIQDFFPFGTNEPGMLFLTGITLLSIAYAGRPRGQ
Ga0214473_120227282	3300031949	Soil	MSRILASLLVLLLAVIHAPTPAQALVLSVFQELFPFGTNEPGMLFLTGITLLSLAHAGRS
Ga0310902_100865521	3300032012	Soil	RVVASLLLLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLAYVGGRSR
Ga0307470_107364901	3300032174	Hardwood Forest Soil	MSRIIASIALLMLAVVHAPSQAQALVFSVFQDLLPFSTTNEPITLFLTGVGLLSL
Ga0307471_1015248792	3300032180	Hardwood Forest Soil	MSRIIASIALLLLAVVHAPSQAQALVFSVFQGLVPFSTTNEPITLFLTGIGLLSLAQLGRPRSR
Ga0307471_1018202041	3300032180	Hardwood Forest Soil	RIIASIALLLLAVVHAPSQAQALVFSVFQDLFPFGTTNEPITLFLTGIALLSLAQLGRPRPH
Ga0214472_103866582	3300033407	Soil	MSRVLASLLVLLLVVVHAPTHAQALVFSVFQDFFPFGTNEPGMLILTGVTLLSLAHLGRPRSR
Ga0214471_102547152	3300033417	Soil	VRRTSRVLASLLVLLLAVVHTPTQAQALVFSVFQDFFAFGTNEPGMLLLTGLTLLSLAHLGRPRSR
Ga0326726_113246112	3300033433	Peat Soil	MRRAMALFMVVFLAVVHAPTPAQALVLSALRDLFPFGTNEPGLLVLTGITLLSLSQLGRPSD
Ga0364934_0007627_2177_2416	3300034178	Sediment	LITAAVDSRREESVRRTSQVLASLLVLLLAVVHAPTQAQALVFSIFQDLFPFRTNEPGILLLTGIILLSLAHLAPPRGR
Ga0314786_033119_48_209	3300034664	Soil	VLLLAVIHAPTQAQAVVFSVFGDLFPFGTNEPGMLFLTGVTLLSLAYVGGRSR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099829

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences