Metagenome Family F099825

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099825
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	106 residues
Representative Sequence	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKTVAPAVVDEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRPLLAYARIEEPELAPALARLCLRRR
Number of Associated Samples	95
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	34.95 %
% of genes near scaffold ends (potentially truncated)	27.18 %
% of genes from short scaffolds (< 2000 bps)	77.67 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.146 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (6.796 % of family members)
Environment Ontology (ENVO)	Unclassified (38.835 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.660 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.91% β-sheet: 1.52% Coil/Unstructured: 57.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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SCOP family	SCOP domain	Representative PDB	TM-score
a.104.1.0: automated matches	d4dvqa_	4dvq	0.56097
a.118.1.25: RPA1889-like	d2i9ca1	2i9c	0.55108
a.102.3.2: Hyaluronate lyase-like catalytic, N-terminal domain	d1hn0a1	1hn0	0.54606
a.118.12.1: Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain	d2grrb_	2grr	0.54482
a.102.3.2: Hyaluronate lyase-like catalytic, N-terminal domain	d1rwaa1	1rwa	0.54225

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF09335	SNARE_assoc	5.83
PF09037	Sulphotransf	1.94
PF02954	HTH_8	1.94
PF01638	HxlR	1.94
PF03283	PAE	1.94
PF01244	Peptidase_M19	1.94
PF13442	Cytochrome_CBB3	1.94
PF04828	GFA	0.97
PF00561	Abhydrolase_1	0.97
PF13424	TPR_12	0.97
PF13649	Methyltransf_25	0.97
PF02518	HATPase_c	0.97
PF00391	PEP-utilizers	0.97
PF13417	GST_N_3	0.97
PF13374	TPR_10	0.97
PF07883	Cupin_2	0.97
PF12697	Abhydrolase_6	0.97
PF07690	MFS_1	0.97
PF03747	ADP_ribosyl_GH	0.97
PF00207	A2M	0.97
PF04545	Sigma70_r4	0.97
PF10136	SpecificRecomb	0.97
PF03949	Malic_M	0.97
PF14834	GST_C_4	0.97
PF12833	HTH_18	0.97
PF07992	Pyr_redox_2	0.97
PF13645	YkuD_2	0.97
PF13091	PLDc_2	0.97
PF13458	Peripla_BP_6	0.97
PF13561	adh_short_C2	0.97
PF08281	Sigma70_r4_2	0.97
PF04055	Radical_SAM	0.97
PF00155	Aminotran_1_2	0.97
PF13472	Lipase_GDSL_2	0.97
PF06745	ATPase	0.97
PF00043	GST_C	0.97
PF08818	DUF1801	0.97
PF00970	FAD_binding_6	0.97
PF11799	IMS_C	0.97
PF01323	DSBA	0.97
PF02777	Sod_Fe_C	0.97
PF09699	Paired_CXXCH_1	0.97
PF00296	Bac_luciferase	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	5.83
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	5.83
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	5.83
COG4424	LPS sulfotransferase NodH	Cell wall/membrane/envelope biogenesis [M]	1.94
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.94
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	1.94
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.97
COG0281	Malic enzyme	Energy production and conversion [C]	0.97
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.97
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.97
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.97
COG1397	ADP-ribosylglycohydrolase	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.97
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.97
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.15 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	86.41 %
Unclassified	root	N/A	4.85 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	70.87 %
Unclassified	root	N/A	4.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	70.87 %
Unclassified	root	N/A	4.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	55.34 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	9.71 %
Unclassified	root	N/A	4.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Nannocystineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae	51.46 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.71 %
Unclassified	root	N/A	4.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.97 %

Name	Rank	Taxonomy	Distribution
Kofleriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae	51.46 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.71 %
Unclassified	root	N/A	4.85 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Kofleriaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae	51.46 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.71 %
Unclassified	root	N/A	4.85 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %

Name	Rank	Taxonomy	Distribution
Kofleriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	51.46 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.71 %
Unclassified	root	N/A	4.85 %
Archangium gephyra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	0.97 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003321\|soilH1_10112080	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2459	Open in IMG/M
3300003321\|soilH1_10174998	All Organisms → cellular organisms → Bacteria	4637	Open in IMG/M
3300004015\|Ga0055462_10041488	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300005258\|Ga0074071_1024675	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300005329\|Ga0070683_100341448	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1426	Open in IMG/M
3300005330\|Ga0070690_100007824	All Organisms → cellular organisms → Bacteria → Proteobacteria	6129	Open in IMG/M
3300005332\|Ga0066388_105904161	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	619	Open in IMG/M
3300005334\|Ga0068869_100052738	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2954	Open in IMG/M
3300005343\|Ga0070687_101266455	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	546	Open in IMG/M
3300005345\|Ga0070692_10485647	Not Available	797	Open in IMG/M
3300005356\|Ga0070674_101289791	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	651	Open in IMG/M
3300005456\|Ga0070678_100062996	All Organisms → cellular organisms → Bacteria → Proteobacteria	2741	Open in IMG/M
3300005466\|Ga0070685_10737425	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	721	Open in IMG/M
3300005536\|Ga0070697_100301140	All Organisms → cellular organisms → Bacteria → Proteobacteria	1378	Open in IMG/M
3300005544\|Ga0070686_100358175	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300005545\|Ga0070695_100772023	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	768	Open in IMG/M
3300005545\|Ga0070695_100787110	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	761	Open in IMG/M
3300005615\|Ga0070702_100255992	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1189	Open in IMG/M
3300005719\|Ga0068861_100320783	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1349	Open in IMG/M
3300005843\|Ga0068860_100130315	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	2413	Open in IMG/M
3300005844\|Ga0068862_101757651	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	629	Open in IMG/M
3300006028\|Ga0070717_10101831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2439	Open in IMG/M
3300006028\|Ga0070717_10144675	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	2053	Open in IMG/M
3300006169\|Ga0082029_1609527	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300006755\|Ga0079222_10593504	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300006854\|Ga0075425_100707459	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300006880\|Ga0075429_100028542	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	4845	Open in IMG/M
3300006914\|Ga0075436_101083584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	603	Open in IMG/M
3300006931\|Ga0097620_100698969	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1105	Open in IMG/M
3300006954\|Ga0079219_10033891	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2049	Open in IMG/M
3300009148\|Ga0105243_10293431	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1470	Open in IMG/M
3300009553\|Ga0105249_11624598	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	719	Open in IMG/M
3300009553\|Ga0105249_12316899	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	610	Open in IMG/M
3300009870\|Ga0131092_10583119	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	981	Open in IMG/M
3300010044\|Ga0126310_11020614	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	653	Open in IMG/M
3300010044\|Ga0126310_11123080	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	627	Open in IMG/M
3300010337\|Ga0134062_10019609	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2576	Open in IMG/M
3300010362\|Ga0126377_12717140	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	570	Open in IMG/M
3300010398\|Ga0126383_10380108	All Organisms → cellular organisms → Bacteria → Proteobacteria	1443	Open in IMG/M
3300010398\|Ga0126383_12298869	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	625	Open in IMG/M
3300010399\|Ga0134127_12006219	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	656	Open in IMG/M
3300010400\|Ga0134122_11335815	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	727	Open in IMG/M
3300010401\|Ga0134121_11054976	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	802	Open in IMG/M
3300010403\|Ga0134123_10006213	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7928	Open in IMG/M
3300011438\|Ga0137451_1284509	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	519	Open in IMG/M
3300011442\|Ga0137437_1009021	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3475	Open in IMG/M
3300012228\|Ga0137459_1003773	All Organisms → cellular organisms → Bacteria	4362	Open in IMG/M
3300012924\|Ga0137413_11007372	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	653	Open in IMG/M
3300012943\|Ga0164241_11214549	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	557	Open in IMG/M
3300014325\|Ga0163163_10778957	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1020	Open in IMG/M
3300014745\|Ga0157377_10726880	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	724	Open in IMG/M
3300015051\|Ga0137414_1195689	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1636	Open in IMG/M
3300015242\|Ga0137412_11210271	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	530	Open in IMG/M
3300015264\|Ga0137403_11616808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	502	Open in IMG/M
3300015371\|Ga0132258_13045467	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1160	Open in IMG/M
3300017792\|Ga0163161_10745225	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	819	Open in IMG/M
3300017965\|Ga0190266_10039958	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium gephyra	1573	Open in IMG/M
3300018920\|Ga0190273_10509965	Not Available	882	Open in IMG/M
3300020021\|Ga0193726_1034130	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2503	Open in IMG/M
3300020034\|Ga0193753_10030375	All Organisms → cellular organisms → Bacteria → Proteobacteria	3065	Open in IMG/M
3300021082\|Ga0210380_10208246	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	884	Open in IMG/M
3300021377\|Ga0213874_10115533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	907	Open in IMG/M
3300021384\|Ga0213876_10080023	All Organisms → cellular organisms → Bacteria → Proteobacteria	1727	Open in IMG/M
3300021384\|Ga0213876_10168279	All Organisms → cellular organisms → Bacteria → Proteobacteria	1166	Open in IMG/M
3300021403\|Ga0210397_10352290	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1092	Open in IMG/M
3300022915\|Ga0247790_10000141	All Organisms → cellular organisms → Bacteria → Proteobacteria	38100	Open in IMG/M
3300023270\|Ga0247784_1018241	All Organisms → cellular organisms → Bacteria → Proteobacteria	1634	Open in IMG/M
3300024430\|Ga0196962_10088295	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	955	Open in IMG/M
3300025936\|Ga0207670_10251380	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1366	Open in IMG/M
3300025937\|Ga0207669_10664547	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	853	Open in IMG/M
3300025942\|Ga0207689_10096099	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	2434	Open in IMG/M
3300025960\|Ga0207651_11446871	Not Available	619	Open in IMG/M
3300025961\|Ga0207712_10231085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1485	Open in IMG/M
3300026118\|Ga0207675_100445986	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1282	Open in IMG/M
3300026121\|Ga0207683_10001756	All Organisms → cellular organisms → Bacteria → Proteobacteria	19187	Open in IMG/M
3300026983\|Ga0207856_1003493	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3254	Open in IMG/M
3300027574\|Ga0208982_1026755	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1130	Open in IMG/M
3300027843\|Ga0209798_10546842	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300027909\|Ga0209382_11657018	Not Available	630	Open in IMG/M
3300028380\|Ga0268265_10415960	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1247	Open in IMG/M
3300028381\|Ga0268264_10195284	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1847	Open in IMG/M
3300028794\|Ga0307515_10046913	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6588	Open in IMG/M
3300028802\|Ga0307503_10555526	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	627	Open in IMG/M
3300029923\|Ga0311347_10874151	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	546	Open in IMG/M
3300030000\|Ga0311337_11951479	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	516	Open in IMG/M
3300030002\|Ga0311350_10743293	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	880	Open in IMG/M
3300030294\|Ga0311349_10195445	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1904	Open in IMG/M
3300031232\|Ga0302323_101273587	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300031507\|Ga0307509_10182408	All Organisms → cellular organisms → Bacteria → Proteobacteria	1962	Open in IMG/M
3300031616\|Ga0307508_10600810	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	702	Open in IMG/M
3300031726\|Ga0302321_100844632	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1035	Open in IMG/M
3300031730\|Ga0307516_10042835	All Organisms → cellular organisms → Bacteria → Proteobacteria	4488	Open in IMG/M
3300031731\|Ga0307405_11427359	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	606	Open in IMG/M
3300031740\|Ga0307468_101651556	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	601	Open in IMG/M
3300031938\|Ga0308175_102809794	Not Available	544	Open in IMG/M
3300032126\|Ga0307415_100117257	All Organisms → cellular organisms → Bacteria	1988	Open in IMG/M
3300033412\|Ga0310810_10943085	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	749	Open in IMG/M
3300033480\|Ga0316620_12606053	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	503	Open in IMG/M
3300033487\|Ga0316630_10490092	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1004	Open in IMG/M
3300033513\|Ga0316628_100392064	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	1762	Open in IMG/M
3300033513\|Ga0316628_100714663	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1316	Open in IMG/M
3300034191\|Ga0373909_0183884	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → unclassified Kofleriaceae → Kofleriaceae bacterium	656	Open in IMG/M
3300034268\|Ga0372943_0045732	All Organisms → cellular organisms → Bacteria → Proteobacteria	2431	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.08%
Host-Associated	Host-Associated	33.98%
Engineered	Engineered	1.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.25%
Plants	Host-Associated → Plants	33.98%
Aquatic	Environmental → Aquatic	5.83%
Wastewater	Engineered → Wastewater	0.97%
Bioremediation	Engineered → Bioremediation	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	51.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.62%
Roots	Host-Associated → Plants → Roots	7.77%
Peat	Environmental → Terrestrial → Peat	5.83%
Sediment	Environmental → Aquatic → Sediment	2.91%
Freshwater	Environmental → Aquatic → Freshwater	1.94%
Marine	Environmental → Aquatic → Marine	0.97%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.97%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.97%
Metal	Engineered → Bioremediation → Metal	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.07%
Loam	Environmental → Terrestrial → Soil → Loam	15.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.71%
Unclassified	Host-Associated → Plants → Roots → Unclassified	6.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.97%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.97%
Sand	Environmental → Terrestrial → Soil → Sand	0.97%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.97%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.62%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.71%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	6.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.97%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.97%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.97%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.80%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	5.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.88%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	3.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.88%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	2.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.97%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.97%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.97%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.97%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004015	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D1	Environmental	Open in IMG/M
3300005258	Microbial communities on the surface of bentonite enhanced biochar	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2)	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012228	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026983	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 21 (SPAdes)	Environmental	Open in IMG/M
3300027574	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027843	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030000	I_Fen_N3 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034191	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1	Engineered	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
soilH1_101120803	3300003321	Sugarcane Root And Bulk Soil	MQTCGHALCELIGGDCSLATRRSRGCTPGLTSKSVAPEVFDEVRALLPRIDEGNREAAARLAAIVRREALEDRLLVVIARTDEPDLAPALSRLCLRQR*
soilH1_101749984	3300003321	Sugarcane Root And Bulk Soil	MCGHRLCELIGGVCSIANGRSRGCTRGLAPKTTAPEVFDEVRELLAAIGHSDRAAAIRLAEIIRREARDDRNLLVQARSDEPDLAPALERLCLRHS*
Ga0055462_100414882	3300004015	Natural And Restored Wetlands	MGLATDCDHPLCGIIGGPCSLATGRSRGCRPGLASKVVAPEAFDEVRTLVAVIDPDGRDERGREAAARLAAIIRREAREDRHLVALASAEDPELADSLARLCRRRP*
Ga0074071_10246752	3300005258	Soil	MEPCGHRLCELIGGDCSLATRRSRGCTPGLGSKDVAPEVFDEVRALLPRIDAGDREAAARLAAIVRREALEDRLLVVIARTDEPDLAPALSRWCIRQR*
Ga0070683_1003414482	3300005329	Corn Rhizosphere	VSESCGHPLCELIGGSCSIATGRSRGCHAGFTSRTVADEVFDEVRALLAVIDPRVRDDRGRAAAVRLAEIIRREAREDRNLVVLARSDEPELADALAELCIRRAR*
Ga0070690_1000078246	3300005330	Switchgrass Rhizosphere	MCCSIAALHAVSATLCTQEVATDCGHLLCELIDRSCSLAIRRSRGCRPSLVSKSVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRHLLAYARIEEPELAPALARLCLRRR*
Ga0066388_1059041611	3300005332	Tropical Forest Soil	MGPPRTQDVTTACGHLLCELIDRSCSLATGRSRGCRPNLGVKSIAPDVVEEVRALLAVIDPEVRDERVQKAAVRLAEIMRREARDDRHLLAYARIEEPELAPALERLCRRRR*
Ga0068869_1000527382	3300005334	Miscanthus Rhizosphere	VCGHPLCELIGGACSLATNRSRGCRPQLAARELAPEVLAEVRELLGAIERRERPAAVRLAQIIRREALDNRNLLALARDEDPELAAALAPLCVRVTRPA*
Ga0070687_1012664551	3300005343	Switchgrass Rhizosphere	VIADCGHLLCEIIERPCSLATGRSRGCRPNLGSRTVAPDVVDEVRALLAVIDPAVRDDQIRTAAVRLAAILRREARDDRPLLAYARIEEPELAPALERLCVRQR*
Ga0070692_104856472	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MGSVTDADCGHPLCALIGEACSLATHRSRGCRPGIAEKSVAPAVCDEVRGLVAAIGASGDRTAALRLAQIVRREALDNRNLVALARDEDAELADALAALCVRRRS*
Ga0070674_1012897912	3300005356	Miscanthus Rhizosphere	VPDCGHPLCELIDGSCSLATDRSRGCRPGLAPRTVAPEVFDEVRELIALIEGDAGTEQRRAAAIRLAEVVRREAREDRLLLVIARDDEPDLAPVLARLCLRRSR*
Ga0070678_1000629962	3300005456	Miscanthus Rhizosphere	MSDCGHPLCALIGGSCSLATRRSRGCTPGLTPRTVAAEVFDEVRELLARIEGDAPPEDRRTAATRLAEIVRREALEDRLLLVIARDEEPDLAPALTRLCSRAAIR*
Ga0070685_107374252	3300005466	Switchgrass Rhizosphere	VTPDCGHLLCEIIERPCSLATGRSRGCRPNLGSRTVAPDVVDEVRALLAVIDPAVRDDQIRTAAVRLAAILRREARDDRPLLAYARIEEPELAPALERLCVRQR*
Ga0070697_1003011401	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RLMCGHPLCELIGGACSLATNRSRGCRPQLAARELAPEVLAEVRELLGAIARRERPAAVRLAQIIRREALDNRNLIPLARDEDPELADALAALCVRVTRPVGR*
Ga0070686_1003581752	3300005544	Switchgrass Rhizosphere	VTSGCGHLLCELIGGTCSLATGRSRGCRPNLVARDIAPELIDEVRALLVMIDPATRDDRVREAAIRLAEILRREALEDRPLLAYARIEEPELAAPLARLCVRRRPSDVA*
Ga0070695_1007720231	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VPPDCGHLLCELIKGSCSLATGRSRGCRPGLTSKTVAPEVFEEVRALIAVIDPRIRDERVRTAAIRLAEIIRREAREDRNLLALARDDEAD
Ga0070695_1007871102	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VTPDCGHLLCELIDGPCSLATGRSRGCTPGLASKTVAPEVFDEVRELLAVIDPDLRGARVQAAAVRLAEIIRREARDDRHLLAHLRDEEPELAPALARLCVRRSPGHD*
Ga0070702_1002559924	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQACDERSRSAAARLARIIRREALDDRNLVALARDEE
Ga0068861_1003207831	3300005719	Switchgrass Rhizosphere	VAATPWRLGSCDHREAASRMSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQACDERSRSAAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR*
Ga0068860_1001303155	3300005843	Switchgrass Rhizosphere	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQACDERSRSAAARLARIIRREALDDRNLVALISDDEPELAPALARLCSRRR*
Ga0068862_1017576512	3300005844	Switchgrass Rhizosphere	DCGHLLCELIDRSCSLATGRSRGCRPNLGSKIVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRPLLAYARIEEPELAPALARLCLRRR*
Ga0070717_101018312	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VTRDCGHLLCELIDDSCSLATGRSRGCRPGLTSKTVEPAVFDEVRALLAVIDPNVRDARVHAAAVRLAKIIRREALEDRLLVVLARSEEPDLAPALAQLCARRR*
Ga0070717_101446753	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	RARAAARVVARIGYAAPITTDCGHLLCELIERPCSLATGRSRGCRPNLGSKQVAPEVVDEVRALLAVIDPAIRDERVRAAAVRLAEILRREALDDRPLLAYARIEEPELAPALARLCVRRR*
Ga0082029_16095272	3300006169	Termite Nest	MTDGCGHRLCEMIGGACSLATGRSRGCTPSLASREVAPETFDEVRALLPSVEGGDRTAAVRLAAIIRREALADRLVLAAARTEEPDLAPALERLCVRHR*
Ga0079222_105935042	3300006755	Agricultural Soil	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVLDEVRELVALIDPQARDERSRSTAARLARIIRREALDDRNLVALARDEEPELGVALAALCVRRR*
Ga0075425_1007074592	3300006854	Populus Rhizosphere	MCGHPLCELIGGACSLATNRSRGCRPQLAARELAPEVLAEVRALLGAIARRERPAAVRLAQIIRREALDNRNVLVLARDEDPELADALAAVCVRVTRPV*
Ga0075429_1000285425	3300006880	Populus Rhizosphere	VCQCGELCQNAHVCGHLLCELIGDGACSLATNRSRGCRPQLAAREVAPEMFAEVRELVAVIERRRDAAVRLAQIIRREALDDRNLVVLARDEDPELAAALARLCVRQR*
Ga0075436_1010835841	3300006914	Populus Rhizosphere	MCGHPLCELIGGACSLATNRSRGCRPQLAARELAPEVLAEVRELLGAIARRERPAAVRLAQIIRREALDNRNLIPLARDEDPELADALAALCVRVTRPVGR*
Ga0097620_1006989692	3300006931	Switchgrass Rhizosphere	MTSGRVRRSLHAASATLCAQGVTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKIVAPEVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRPLLAYARIEEPEFAPALERLCVRRR*
Ga0079219_100338912	3300006954	Agricultural Soil	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVLDEVRELVALIDPQARDERSRSTAARLARIVRREALDDRNLVALARDEEPELGAALAALCVRRR*
Ga0105243_102934311	3300009148	Miscanthus Rhizosphere	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQACDERSRSAAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR*
Ga0105249_116245982	3300009553	Switchgrass Rhizosphere	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKSVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREARDDRLLLAYARIEEPELAPALARLCLRRR*
Ga0105249_123168991	3300009553	Switchgrass Rhizosphere	TGMTACGHRLCELIGGECSLATRRSRGCTPALTSRSVAPGVFDEVRMLIAANDGGDRTAAVRLAEIVRREALEDRLLLVIARDEEPDLVPALEALCTRRR*
Ga0131092_105831192	3300009870	Activated Sludge	MAPACGHLLCELIEDRSCSLATGRSRGCTPGLTSRTVAPEVLDEVRELLAVIDPTRRGEQVRAAAIRLAEIVRREARDDRNLVLLARDEEPELAPALARLCLRAP*
Ga0126310_110206142	3300010044	Serpentine Soil	VTPDCRHLLCELIGGTCSLAIHRTRGCRPNVTSRDIAPEVFDEVRTLLAAIDPGAPDERGRAAAIRLAAIVRREAFDDRNLIAIAHDDEPELAPALVRLCSRRRERE*
Ga0126310_111230801	3300010044	Serpentine Soil	MSPDCRHLLCELIGGSCGLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQARDERSRSAAARLARIIRREALDDRNLVALARDEESELGAALAALCVRRR*
Ga0134062_100196092	3300010337	Grasslands Soil	VCTQEVTTDCGHLLCELIDRSCSLATGRSRGCRPNLASRSIAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREARDDRPLLAYARIEEPELVPALARLCVRRR*
Ga0126377_127171402	3300010362	Tropical Forest Soil	MSADCRHPLCELIGGPCSLATNRSRGCRPGLASRTVAPEVFDEVRGLLGAIAARDDGSPTAAARLAQIIRREALDDRNLVALARDEEPELAAAL
Ga0126383_103801082	3300010398	Tropical Forest Soil	MTPETDCGHLLCEIISGSCSLATGISRGCHSGAGSGSRSVAPDVVEEVRSLLAAIDPDARDERVQTAAVRLAEIMRREARDGRPLLAHVRTEEPGLAPALAHLCVRRR*
Ga0126383_122988691	3300010398	Tropical Forest Soil	VTTDCGHLLCELIERSCSLATGRSRGCRPNLGSRTVAPEVVEEVRALLAVIDPDARDERVHKAAVRLAEIMRREARDDRHLLAYARVEEPELVPALARLCVPRR*
Ga0134127_120062191	3300010399	Terrestrial Soil	VTPDCGHLLCELIDGPCSLATGRSRGCTPGLASKTVAPEVFDEVRELLAMIDPKLRDARVHAAAVRLAEIIRREARDDRHLLAHLRDEEPELAPALARLCVRRSPGHD*
Ga0134122_113358151	3300010400	Terrestrial Soil	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPGVFDEVRELVALIDPQACDEPGRSAAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR*
Ga0134121_110549762	3300010401	Terrestrial Soil	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLASKSVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREARDDRPLLAYARIEEPELAPALARLCVRRR*
Ga0134123_100062133	3300010403	Terrestrial Soil	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQARDERSRSAAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR*
Ga0137451_12845091	3300011438	Soil	MSPDCRHLLCELIGDSCSLATNRSRGCRPGLASKDVSPAVFDEVRRLLAVIDPRVRDERARSAAARLAQLVRREALDDRNLVALARDEEPDLAEALAELCVRRR*
Ga0137437_10090213	3300011442	Soil	MSPDCRHLLCELIGDSCSLATNRSRGCRPGLASKDVAPAVFDEVRRLLAVIDPRVRDERARSAAARLAQLVRREALDDRNLVALARDEEPDLAEALAELCVRRR*
Ga0137459_10037733	3300012228	Soil	MSPDCRHLLCELIGDSCSLATNRSRGCRPGLASKDVAPAVFDEVRRLLAVIDPRVRDERARSAAARLAQLVRREALDERNLVALARDEEPDLAEALAELCVRRR*
Ga0137413_110073722	3300012924	Vadose Zone Soil	LFRLRCIQEVTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKRIAPDVVEEVRALLAVIDPDVRDERVQQAAIRLAAIMRREALDDRHLLAYARIEEPELAPALARLCVRRR*
Ga0164241_112145491	3300012943	Soil	TGRSRGCRPGLYSSTVAPEVFDEVRALVTVIDAQDERARVAAIRLAEIIRREAREDRNLVVLARDDEPELAPALSRLCSRQR*
Ga0163163_107789571	3300014325	Switchgrass Rhizosphere	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKSVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRPLLAYARIEEPELAPALARLCLRRR*
Ga0157377_107268801	3300014745	Miscanthus Rhizosphere	VCGHPLCELIGGACSLATNRSRGCRPQLAARELAPEVLAEVRELLGAIERRERPAAVRLAQIIRREALDNRNLLALARDEDPELAAALAPLCV
Ga0137414_11956891	3300015051	Vadose Zone Soil	MTTDCGHLLCELIGGPCSLATRRSRGCRPNLVSKHVAPEIVDEVRALVALIDPDVRDDRIRRAAVRLAEIMRREALDDRPLLAYARIEEPELAPALERLCLRRR*
Ga0137412_112102711	3300015242	Vadose Zone Soil	LFRLRCIQEVTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKRIAPDVVEEVRALLAVIDPDVRDERVQQAAIRLAAIMRREALDDRHLLAYARIE
Ga0137403_116168082	3300015264	Vadose Zone Soil	GHLLCELIDRSCSLATGRSRGCRPNLASKTIAPDVIDEVRALLTVIDPDVRDERVWQAAIRLAEIMRREALDDRPLLAYARLEDPELAAALARLCVRRR*
Ga0132258_130454672	3300015371	Arabidopsis Rhizosphere	DSARSSGVHADNSLHCYGDDVTTSCGHPLCELIGGPCSLTAGRSRGCTPGLAPREVAPEVFDEVRALLPAIDLADANSRPAAVRLAEIFRREAREDRNLVALARDEEPELGPALQRLCLRRDR*
Ga0163161_107452251	3300017792	Switchgrass Rhizosphere	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQACDERSRSAAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR
Ga0190266_100399582	3300017965	Soil	VTPECGHPLCALIEGSCSLASGRSRGCTPGLASKNVASEVFEEVRELLAVIDPNVRTERVHAAAVRLAEIIRREAREDRNLLAVARTDEPELAPALARLCLRRR
Ga0190273_105099651	3300018920	Soil	MNACGHRLCEMIDTSCSIATNRSRGCRPNLVEKTANPVLLDEVRSLVATIDPAVHDDGMRAMAIRLAEIVRREALDERPLLAYARIDEPELVPALERLLVRRR
Ga0193726_10341302	3300020021	Soil	VDDCEHLICEIIGGDCSLASGRSRGCRPSLASRGVEPAVLDEVRALIAAIDPDRRDEGVRAAAVRLAAIVRREALDNRHLLAIARDEEPELAGLLGRLISRRAPPV
Ga0193753_100303755	3300020034	Soil	MVNDCGHLLCELIDDRSCSLATGRSRGCRPNLTSKTIAPEVIDEVRALLGTIDLRDRDAAIRLAKIIRSEAREDRHLVAYARIEEPELAPALERLCVRRR
Ga0210380_102082462	3300021082	Groundwater Sediment	MSPDCRHLLCELIGDSCSLATNRSRGCRPGLASKDVSPAVFDEVRRLLAVIDPRVRDERARSAAARLAQLVRREALDDRNLVALARDEEPDLAEALAELCVRRR
Ga0213874_101155332	3300021377	Plant Roots	VAPDCEHLLCELIGGSCSLASGRSRGCRPGLAERTVAPEVFDEVRTLLAAIEAQRDRTAAIRLAEIIRREARDDRNLLAIARSDEPDLAPALARLCVRRR
Ga0213876_100800232	3300021384	Plant Roots	MARRDARSEGDVEQRRAVACGHPLCELIGGECSLATRRSRGCTPGFASKSVAPDVFDEVRALLPRIDAGDREAATRLAAIVRREALEDRLLVVIARDEEPDLAPALARLCTRY
Ga0213876_101682792	3300021384	Plant Roots	VTDCGHPLCELITGPCSLATGRSRGCTPGIAPKTVAPEVYDEVRTLLAAIAQRDRPAAARLAEIVRREARDDRNLVVLARDDEPELAPELARLCLRGR
Ga0210397_103522902	3300021403	Soil	MSCGHLLCELIGGACSLATGRSRGCRPNLTAREIAPEVLDEVRELVAAIDPSSLDDRGRAAAVRLAQVFRREARDDRNLLLIARSDELDFPRALGRLCQ
Ga0247790_100001416	3300022915	Soil	MSPDCRHLLCELAGGTCSLATNRSRGCRPGLASKLVAPAVFDEVRGLLAVIDPQVRDDRVRAAAVRLAQIIRREALDDRNLVALARDEEPDLAAALAELCVRRRSAQ
Ga0247784_10182412	3300023270	Plant Litter	VTIDCGHLLCELIERPCSLATGRSRGCRPNLVSKQIAPELVDEVRALLAVIDPDARDDRVRSAAVRLAEILRREALDDRPLLAYARIEEPELAPALERLCVRRRP
Ga0196962_100882952	3300024430	Soil	MTSGCGHLLCELIDRSCNLATRRSRGCRPGSAPKSVAAEVFDEVRALLAVIDPDVRDERVRVAAVRLAAIIRREALDDRHLLAHARIDEPELVPALERLCVR
Ga0207670_102513803	3300025936	Switchgrass Rhizosphere	VCGHPLCELIGGACSLATNRSRGCRPQLAARELAPEVLAEVRELLGAIERRERPAAVRLAQIIRREALDNRNLLALARDEDPELAAALAPLCVRVTRPA
Ga0207669_106645472	3300025937	Miscanthus Rhizosphere	VPDCGHPLCELIDGSCSLATDRSRGCRPGLAPRTVAPEVFDEVRELIALIEGDAGTEQRRAAAIRLAEVVRREAREDRLLLVIARDDEPDLAPVLARLCLRRSR
Ga0207689_100960992	3300025942	Miscanthus Rhizosphere	VCGHPLCELIGGACSLATNRSRGCRPQLAARELAPEVLAEVRELLGAIERRERPAAVRLAQIIRREALDNRNLLALARDEDPELPAALAPLCVRVTRPA
Ga0207651_114468711	3300025960	Switchgrass Rhizosphere	RSRGCRPQLAARELAPEVLAEVRELLGAIERRERPAAVRLAQIIRREALDNRNLLALARDEDPELAAALAPLCVRVTRPA
Ga0207712_102310852	3300025961	Switchgrass Rhizosphere	MCCSIAALHAVSATLCTQEVATDCGHLLCELIDRSCSLAIRRSRGCRPSLVSKSVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRHLLAYARIEEPELAPALARLCLRRR
Ga0207675_1004459861	3300026118	Switchgrass Rhizosphere	CSTPRHEARARPCDVAATPWRLGSCDHREAASRMSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQACDERSRSAAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR
Ga0207683_100017564	3300026121	Miscanthus Rhizosphere	MSDCGHPLCALIGGSCSLATRRSRGCTPGLTPRTVAAEVFDEVRELLARIEGDAPPEDRRTAATRLAEIVRREALEDRLLLVIARDEEPDLAPALTRLCSRAAIR
Ga0207856_10034934	3300026983	Tropical Forest Soil	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQAGDERSRSAAARLARIIRREALDDRNLVALARDEEPELGTALAALCVRRR
Ga0208982_10267551	3300027574	Forest Soil	MTTGCGHLLCELIGGSCSLATRRSRGCRPNLVSKHVAPEVVDEVRALLALIDPDVRDERIHKAAVRLAEIMRREALDDRPLLAYARIEEPELAPALERLCLRRR
Ga0209798_105468422	3300027843	Wetland Sediment	RPDIVNRSVAVGCGHLLCELIEGPCSLALQRSRGCRPNVNAKSVAPAVFDEVRELLAAIDPDVRDDRGRTAAIRLAAIMRRENLEDRPLLAHVRIEEPDLAPALERLCVRS
Ga0209382_116570181	3300027909	Populus Rhizosphere	VCWVGDADQVDGKSEQVTAACGHLLCELIGPSCSLATNRSRGCRPQLASKSVAPEIFDEVRELLATIDPQVRDERVRAAAARLAQIVRREALDGRNLVALARDEDADLAAALAPLCIRRR
Ga0268265_104159602	3300028380	Switchgrass Rhizosphere	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLGSKIVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRHLLAYARIEEPELAPALARLCLRRR
Ga0268264_101952843	3300028381	Switchgrass Rhizosphere	MSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQACDERSRSAAARLARIIRREALDDRNLAALARDEEPELGAALAALCVRRR
Ga0307515_100469132	3300028794	Ectomycorrhiza	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKTVAPDVIDEVRALLAVIDPDARDERVQKAAVRLAEIMRREALDDRPLLAYARIEEPELAPALARLCLRRR
Ga0307503_105555262	3300028802	Soil	SLATGRSRGCRPNLTSKTIAPELVEEVRALLAVIDPEVRDERVRNAAIRLAEIMRREALEDRHLLVYARTEEPELAPALERLCVRQR
Ga0311347_108741512	3300029923	Fen	HLLCELIGGACSLATHRTRGCRPTLALKSVAPGVFDEVRELVALIDLQARDERSRAAAARLARVVRREALDERNLVALAHDEEPELGATLAALCVRRR
Ga0311337_119514791	3300030000	Fen	MIPDCRHLLCELIGGACSLATHRTRGCRPTLALKSVAPGVFDEVRELVALIDLQARDERSRAAAARLARVVRREALDERNLVALAHDEEPELGATLAALCVRRR
Ga0311350_107432932	3300030002	Fen	PPAASRPPLRPLDATTAFQLPSLPDVTTGCGHLLCELIDRSCSLATGRSRGCRPNLVAKTVAPEVIEEVRALLAVIDPEVRDERVQNAAVRLAQIMRREARDDRPLLAYARIEEPELAPALARLCVRRR
Ga0311349_101954452	3300030294	Fen	MADGAATWRSARTVRAVSATLCADVTTDCGHLLCELIDRSCSLATGRSRGCRPNVVSKRVAPEVIDEVRALLAVIDPAVRDQRVQDAAIRLARIMRREALDDRPLLAYARIEEPELAPALARLCVRRR
Ga0302323_1012735872	3300031232	Fen	MPACGHDLCALIEGSCSLATGRSRGCRPGLASKSLAPEVFDEVRTLLAVIEPGVRDARVRAAAVRLAEIIRREAREDRNLLALARIDEPDLAPALAQLCVRQR
Ga0307509_101824082	3300031507	Ectomycorrhiza	VTTACGHLLCELIDRSCSLATGRSRGCRPNLVSRTVAPDVVDEVRALLAVIDPDVRDERVRTAAVRLAEIMRREARDDRPLLAYARIEEPELAPALARLCLRRR
Ga0307508_106008102	3300031616	Ectomycorrhiza	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKTVAPDVIDEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRPLLAYARIEEPELAPALARLCLRRR
Ga0302321_1008446321	3300031726	Fen	TWRSARTVRSVSATLCADVTTDCGHLLCELIDRSCSLATGRSRGCRPNVVSKRVAPEVIDEVRALLAVIDPAVRDQRVQDAAIRLARIMRREALDDRPLLAYARIEEPELAPALARLCVRRR
Ga0307516_100428352	3300031730	Ectomycorrhiza	VTTDCRHLLCELIDRSCSLATGRSRGCRPNLASKIVAPDVVEEVRALLAVIDPDVRDERVHKAAVRLAEIMRREARDDRPLLAYARIEEPELVPALARLCLRRR
Ga0307405_114273591	3300031731	Rhizosphere	MSSDCRHLLCELIGSSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALIDPQARDDRSRSAAARLARIVRREALDDRNLVALARDEEPELGAALAALCVRRR
Ga0307468_1016515561	3300031740	Hardwood Forest Soil	PRHDARARPCDVAATLWRLRSCDHREAASRMSPDCRHLLCELIGGSCSLATNRTRGCRPGLAPKTVAPEVLDEVRELVALIDPQARDERSRSTAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR
Ga0308175_1028097942	3300031938	Soil	GDEPRRPAQEEELSRKMTPGCGHLLCELIDDGSCNLAIGRSRGCSPGLGSKTIAPEVFDEVRRLLAVLDSTARDQRTRTAALDLAKIIRREARSDRHVLAHARTDEPELVPALEELTRRR
Ga0307415_1001172573	3300032126	Rhizosphere	MSSDCRHLLCELIGSSCSLATNRTRGCRPGLAPKTVAPEVFDEVRELVALLDPQACDERSRTAAARLARIIRREALDDRNLVALARDEEPELGAALAALCVRRR
Ga0310810_109430851	3300033412	Soil	ISYLSAPQRQLPFRGMVVRVRVSESCGHPLCELIGGSCSIATGRSRGCHAGFTSRTVADEVFDEVRALLAVIDPRVRDDRGRAAAVRLAEIIRREAREDRNLVVLARSDEPELADALAALCIRRAR
Ga0316620_126060532	3300033480	Soil	VATDCGHLLCELIDRSCSLATGRSRGCRPNLVSKSVAPDVVEEVRALLAVIDPDVRDERVQKAAVRLAEIMRREARDDRPLLAYARIEEPELAPALARLCLRRR
Ga0316630_104900922	3300033487	Soil	VTPTCGHPLCELIDRPCSLATGRSRGCRPGLASKSIAPQIFDEVRELVAIIDPDVCDEQGQAAAVRLAEIIRREAREDRHLLAQARIDEPELAPALARLCLRRRSARRNPTQKR
Ga0316628_1003920642	3300033513	Soil	MTDCGHPLCELIGGSCSLATGRSRGCRPGLASRTIAPEVFDEVRALVAVIESAAGDEAVREAAVRLAAIVRREARDDRLLVVIARDEEPDLAPALARLCLRR
Ga0316628_1007146632	3300033513	Soil	VTATCGHLLCELIGGSCSLATGRSRGCRPGLAPRTVAPEVFDEVRALLAVIDPDARDERTRAAAIRLAEIIRREARDDRLLLVHARADEPDLVPALERLCVRRR
Ga0373909_0183884_307_621	3300034191	Sediment Slurry	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKSVAPDVVEEVRALLVVIDPDVRDERVQKAAVRLAEIMRREALDDRHLLAYARIEEPELAPALARLCLRRR
Ga0372943_0045732_535_849	3300034268	Soil	VTTDCGHLLCELIDRSCSLATGRSRGCRPNLVSKTVAPAVVDEVRALLAVIDPDVRDERVQKAAVRLAEIMRREALDDRPLLAYARIEEPELAPALARLCLRRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099825

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences