Basic Information | |
---|---|
Family ID | F099799 |
Family Type | Metagenome |
Number of Sequences | 103 |
Average Sequence Length | 60 residues |
Representative Sequence | MPIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWDEPPG |
Number of Associated Samples | 72 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 59.80 % |
% of genes near scaffold ends (potentially truncated) | 57.28 % |
% of genes from short scaffolds (< 2000 bps) | 90.29 % |
Associated GOLD sequencing projects | 67 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (58.252 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.573 % of family members) |
Environment Ontology (ENVO) | Unclassified (74.757 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (47.573 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 31.76% β-sheet: 0.00% Coil/Unstructured: 68.24% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Bog Forest Soil Watersheds Tropical Forest Soil Soil Soil Soil Tropical Peatland Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Arabidopsis Rhizosphere Corn Rhizosphere Populus Rhizosphere Arabidopsis Rhizosphere |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0062386_1002046743 | 3300004152 | Bog Forest Soil | LVNFTEHAAAMPIPEDDCVVCGSWRPTDRWARRQIIEWLPVGDDQPVCDECMMTSWQRLIVWDEPHGG* |
Ga0068856_1020896862 | 3300005614 | Corn Rhizosphere | LATFGEHAAAMPIPEDDCVLCKSWPLADRWARRQVTEWLPVGDDQPVCDECMMTSWQRLIVWDEPRG* |
Ga0066903_1047555042 | 3300005764 | Tropical Forest Soil | LGLLWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIVA* |
Ga0066903_1048084791 | 3300005764 | Tropical Forest Soil | LATFGEHAAAMLILEDDCVVCKSWPQADRWARRQVTEWLPVGEDQPVCEECMMTSWQRLVWDEPRS* |
Ga0075018_105110742 | 3300006172 | Watersheds | MPIPEDDCVVCGRWPPAERWARRQVIEWLPVGDDQPVCDECMIALCWRQIVWDEPPGG* |
Ga0070712_1010002032 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | LGLLWATFGEHAVVMPIPEDECVVCQFWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA* |
Ga0070712_1014852471 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | PEDDCVVCGRWPPAERWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWDEPPGG* |
Ga0075433_109631541 | 3300006852 | Populus Rhizosphere | RPALGLRLATFGEHAAAMPIPEDDCVVCKSWPLADRWARRQVTEWLPVGDDQPVCDECMMTSWQRLIVWDEPRG* |
Ga0075425_1003222581 | 3300006854 | Populus Rhizosphere | LGLRLATFGEHAAAMPIPEDDCVVCKSWPLADRWARRQVTEWLPVGDDQPVCDECMMTSWQRLIVWDEPRG* |
Ga0075424_1004589672 | 3300006904 | Populus Rhizosphere | RPALGLRLATFGEHAAAMPIPEDDCVVCKSWPLADRWARRQVNEWLPVGDDQPVCDECMMTGWQRLIVWDEPRG* |
Ga0075436_1010489122 | 3300006914 | Populus Rhizosphere | MSIPEDDCVVCGRWPPAERWARRQITEWLPVGDDQPVCDECMMTSWQRLIVLDEPRG* |
Ga0126380_119854331 | 3300010043 | Tropical Forest Soil | AMPIPENDVAAMPIPEDDCVVCKGWPPTDRWARRQVTEWLPVGDDQPVCDECTMTFWQRLVMWDEPRG* |
Ga0126372_115309222 | 3300010360 | Tropical Forest Soil | MPIPEDDCVVCKSWPLADRWARRQVTEWLPVGDDQPVCDECMMTSWQRLVVWDEPRA* |
Ga0126377_126413892 | 3300010362 | Tropical Forest Soil | LATFGEHTAVMPIPEDDCVVCKSWPLADRWARRQVTEWLPVGDDQPVCDECMMTSWQRLIVWDEPRG* |
Ga0126379_129883212 | 3300010366 | Tropical Forest Soil | LGLLWASFGEHAAVMPIPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDE |
Ga0126381_1001770533 | 3300010376 | Tropical Forest Soil | MPIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWDEPPGG* |
Ga0126381_1005717512 | 3300010376 | Tropical Forest Soil | LGLLWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEKPPEKSPYKRVKGLP* |
Ga0126369_102721052 | 3300012971 | Tropical Forest Soil | LGLLWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEIAA* |
Ga0132258_127476141 | 3300015371 | Arabidopsis Rhizosphere | HVDTRGRVVCGRWPPAERWARRQITEWLPVGDDEPVCDECMMTFWRRLIVGDEPPDG* |
Ga0132256_1020177801 | 3300015372 | Arabidopsis Rhizosphere | MSIPEDDCVVCGRWPSAERWARRQIAEWLPVGDDEPVRDECMMTFWRRLIVGDEPPDG* |
Ga0182036_100267881 | 3300016270 | Soil | AAVMPIPEDDCVVCGRWPPAERWARRQITEWLPVGDDEPVCDECMLTFWRRLIVWDEPPG |
Ga0182036_106550342 | 3300016270 | Soil | LGPLWATFGEHAAAMPIPENDCVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRL |
Ga0182036_106722041 | 3300016270 | Soil | TDRRTAMPIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPMCDECMMTFWRRLIVWNEPPGG |
Ga0182033_104189042 | 3300016319 | Soil | MPIPEEDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWDEP |
Ga0182033_118492581 | 3300016319 | Soil | MPIPENDCVVCRGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVS |
Ga0182033_120778811 | 3300016319 | Soil | LATFDEHAPAMPIPEDDCVVCRTWPAADRWARRAITEWQPVGDDQPVCDECMMT |
Ga0182035_107665022 | 3300016341 | Soil | MPIPEEDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWDEPPGG |
Ga0182034_102058061 | 3300016371 | Soil | MPIPEDDCVVCGRWPPAERWARRQITEWLPVGDDQPVCDECMLTFWRRLIVWDEPPGG |
Ga0182034_102697682 | 3300016371 | Soil | LWATFGEHAAVMPIPENDCVVCKGWRPADRWARRRITEWLPVGNDQPVCEECMMISWQRLIVSDARA |
Ga0182040_105277891 | 3300016387 | Soil | MPIPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIA |
Ga0182040_115086922 | 3300016387 | Soil | IPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA |
Ga0182037_109278321 | 3300016404 | Soil | PIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMLTFWRRLIVWDEPPGG |
Ga0182037_113387102 | 3300016404 | Soil | LWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITQWLPVGDDQPARDECMMTSWQRQIVWDEIAA |
Ga0187782_114146092 | 3300017975 | Tropical Peatland | EHAAAMPIPENDCAVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSDAR |
Ga0210407_101090812 | 3300020579 | Soil | MPITEDNCVVCGGWPPAERWARRQVTEWLPVEDDEPVCDECMMTFWRRLVVWDEPPGG |
Ga0210390_106068972 | 3300021474 | Soil | MPITEDNCVVCGGWPPAERWARRQVTEWLPVEDDEPVCDECMMTFWGG |
Ga0126371_129770631 | 3300021560 | Tropical Forest Soil | LGPLWATFGEHAAAMPIPENDCVVCKGWRPADRWARRQITEWLPVGDDQPVCEECMMTSWQRQIV |
Ga0318516_100612773 | 3300031543 | Soil | MPIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWDEPPGG |
Ga0318541_104706822 | 3300031545 | Soil | LWATFGEHAAVMPIPENDCVVCKGWRPADRWARRRITEWLPVGNDQPVCEECMMISWQRLIVSDEIAA |
Ga0318538_101289023 | 3300031546 | Soil | MSIPEDDCVVCGRWPPAERWARRQLTEWLPVRDDEPVCDECMIAFCWRQIVWDEPPGG |
Ga0318538_103596952 | 3300031546 | Soil | MPIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWDEPPG |
Ga0318573_102325381 | 3300031564 | Soil | LGLLWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECLMTSWQRQIVWDE |
Ga0310915_102552061 | 3300031573 | Soil | LGLLWATFGEHAAAMPIPENDCVVCRGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSDARA |
Ga0310915_112242752 | 3300031573 | Soil | MPIPEDDCVVCRSWHPADRWARRQITEWQPVGDDQPVCDECMMTSWQR |
Ga0318542_101516973 | 3300031668 | Soil | MPIPENDCVVCRGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSDARA |
Ga0318574_107105652 | 3300031680 | Soil | MPIPEDDCVVCGRWPPADRWARRQTIEWLPVRDDEPVCDECMIAFCWRQIVWDEPPGG |
Ga0318572_104197101 | 3300031681 | Soil | LGLLWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITQWLPVGDDQPVCDECMMTSWQRQIVWDEIAA |
Ga0306917_112911191 | 3300031719 | Soil | LATFGEQAAAMPIPEDDCVVCKSWPPADRWARRRVTEWQPVGDDQPVCDECMMTSWQRLIVLDEPRS |
Ga0306917_114045291 | 3300031719 | Soil | CGRWPPADRWARRQITEWLPVGDDEPMCDECMMTFWRRLIVWNEPPGG |
Ga0318501_101345723 | 3300031736 | Soil | MPIPEDDCVVCGRWPPAERWARRQITEWLPVGDDEPVCDECMLTFWRRLIVWDEPPGG |
Ga0318501_101976381 | 3300031736 | Soil | PTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEMAA |
Ga0306918_109882962 | 3300031744 | Soil | MPIPEDDCVVCRSWHPADRWARRQITEWQPVGDDQPMCDECMMTSWQRLIVW |
Ga0318502_107070431 | 3300031747 | Soil | NDFVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA |
Ga0318502_108787671 | 3300031747 | Soil | MPIPEDDCVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSDARA |
Ga0318494_108714901 | 3300031751 | Soil | MSIPEDDCVVCGRWPPAERWARRQTTEWLPVGDDEPMCDECMMAFWRRVIVWD |
Ga0318535_100358432 | 3300031764 | Soil | MSIPEDDCVVCGRWPPAERWARRQLTEWLPVRDDEPVCDECMMAFWRRVIVWDEPPGG |
Ga0318526_102534351 | 3300031769 | Soil | PIPEDDCVVCGRWPPAERWARRQTTEWLPVGDDEPVCDECMMAFWRRVIVWDEPPGG |
Ga0318566_103528383 | 3300031779 | Soil | MPIPEDDCVVCRSWHPADRWARRQITEWQPVGDDQPVCDECMMTSWQRLLVWD |
Ga0318547_103863463 | 3300031781 | Soil | LWATFGEHAAAMPIPENDCVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMM |
Ga0318529_104696283 | 3300031792 | Soil | IPEDDCVVCKSWPPADRWARRRVTEWQPVGDDQPVCDECMMTSWLRLIVLDEPRS |
Ga0318548_105002152 | 3300031793 | Soil | MPIPEDDCVVCGRWPPAERWARRQTTEWLPVGDDEPVCDECMMAFWRRVIVWDEPPGG |
Ga0318550_101260722 | 3300031797 | Soil | LGLLWATFDEHAAVMPIPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA |
Ga0318565_105550741 | 3300031799 | Soil | PIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPMCDECMMTFWRRLIVWNEPPGG |
Ga0318567_103364382 | 3300031821 | Soil | LWATFGEHSAAMPILENDCVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEIAA |
Ga0306919_110604601 | 3300031879 | Soil | MLIPEDDCVVCKSWPPADRWSRRRVTEWQPVGDDQPVCDECMMTSWLRLIVLDEPRS |
Ga0306919_111961681 | 3300031879 | Soil | PEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA |
Ga0318544_101818941 | 3300031880 | Soil | IPENDCVVCKGWRPADRWARRRITEWLPVGDDQPMCDECMMTSWQRAIVWDEPRA |
Ga0306921_104375741 | 3300031912 | Soil | GEHAAAMPIPEDDCVVCRTWPAAHRWARRMITEWQPVGDDQPMCDECMMTSWQRAIVWDEPRV |
Ga0306921_106275851 | 3300031912 | Soil | MPIPEDDCVVCRSWHPADRWARRQITEWQPVGDDQPVCDECMMTSWQRLLVWDD |
Ga0306921_127563713 | 3300031912 | Soil | HRLATFGEQAAAMLIPEDDCVVCKSWPPADRWSRRRVTEWQPVGDDQPVCEECMMTSWLRLIVLDEPRS |
Ga0310916_100235051 | 3300031942 | Soil | MPIPENDCVVCRGWRPADRWARRRITEWLPVGDDQPVCEECMM |
Ga0310913_105788441 | 3300031945 | Soil | IDRPCLGLLWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEMAA |
Ga0310909_100390501 | 3300031947 | Soil | RRELWGSPTPIPEDDCVVCGRWPPAERWARRQTTEWLPVGDDEPVCDECMMAFWRRVIVWDEPPGG |
Ga0306922_100898441 | 3300032001 | Soil | MPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEMAA |
Ga0306922_101476212 | 3300032001 | Soil | MPIPEDDCVVCGRWPPAERWARRQITEWLPVGDDEPVCDECMLTFWRRLVVWDEPPGG |
Ga0306922_123177911 | 3300032001 | Soil | MPIPEDDCVVCGRWPPAERWARRQTTEWLPVGDDEPVCDECMMAFWRRVIVWD |
Ga0318563_101949814 | 3300032009 | Soil | MPIPEDDCVVCRSWHPADRWARRQITEWQPVSDDQPVCDECMMTTWQRLIVGDDPR |
Ga0318563_101991951 | 3300032009 | Soil | LWATFGQHAAAMPIPENDFVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA |
Ga0318563_104009541 | 3300032009 | Soil | AAAMPIPEDDCVVCKGWLPADRWARRRVTEWQPVGDDQPVCDECMMTSWLRLIVLDEPRS |
Ga0310911_100659331 | 3300032035 | Soil | DCVVCGSWRPADRWARRQIREWLPVGDGQPVCDECMMTSWQRQIVWDEPRGG |
Ga0310911_104242072 | 3300032035 | Soil | LGLLWATFDEHAAVMPIPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEIAA |
Ga0310911_108721151 | 3300032035 | Soil | AMPIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPMCDECMMTFWRRLIVWNEPPGG |
Ga0318559_105741262 | 3300032039 | Soil | CVVCRGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSDARA |
Ga0318545_101099644 | 3300032042 | Soil | MPIPEDDCVVCRSWHPADRWARRQITEWQPVSDDQPVCDECMMTSWQRLVVWDEPR |
Ga0318545_101323872 | 3300032042 | Soil | LWATFGEHAAAMPIPENDCVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEIAA |
Ga0318556_102439471 | 3300032043 | Soil | LWATFGEHAAAMPIPENDCAVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSDARA |
Ga0318558_101289951 | 3300032044 | Soil | LGPLWATFGEHAAAMPIPENDCVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSD |
Ga0318506_101542932 | 3300032052 | Soil | VCGRWPPAERWARRQTTEWLPVGDDEPVCDECMMAFWRRVIVWDEPPGG |
Ga0318533_111828821 | 3300032059 | Soil | LATFGEQAAAMLIPEDDCVVCKSWPPADRWSRRRVTEWQPVGDDQPVCDECMMTSWLRLIVLDEPRG |
Ga0318553_102279322 | 3300032068 | Soil | LGLLWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMTSWQRQIVWDEMAA |
Ga0306924_106922411 | 3300032076 | Soil | PIPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA |
Ga0306924_114585891 | 3300032076 | Soil | MPIPEDDCVVCGRWPPAERWARRQTTEWLPVGDDEPVCDECMMAFWRRVIVWDEPPG |
Ga0318518_104077444 | 3300032090 | Soil | VCGRWPPAERWARRQLTEWLPVRDDEPVCDECMIAFCWRQIVWDEPPGG |
Ga0318518_104383691 | 3300032090 | Soil | MPIPEDDCVVCGRWPPADRWARRQITEWLPVGDDEPVCDECMMTFWRRLIVWD |
Ga0318540_103056721 | 3300032094 | Soil | LWATFGEHAAVMPTPEDECVVCKGWRPADRWARRRITEWLPVGDDQPVCEECIITSWQRQIVWDEIAA |
Ga0306920_1001104781 | 3300032261 | Soil | MPIPENDCVVCRGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLI |
Ga0306920_1010573181 | 3300032261 | Soil | LATFGEQAAAMLIPEDDCVVCKSWPPADRWARRRVTEWQPVGDDQPVCDECMMTSWLRL |
Ga0306920_1017520842 | 3300032261 | Soil | MPIPEDDCVVCGRWPPAERWARRQVIEWLPVGDDQPVCDECMIAFCWRQIVWDEPPGG |
Ga0306920_1021236841 | 3300032261 | Soil | MPIPEDDCVVCGRWPPAKRWARRQITEWLPVGDDQPVCDECMLTFWRRLIVWDEIAA |
Ga0335085_123761211 | 3300032770 | Soil | GLGLATFGEHATTMAIPEDDCVVCKSWPSADRWARRQVTEWLPVSDDQPVCDECVLTTWQRLTVLDEPRV |
Ga0335080_104492341 | 3300032828 | Soil | LATFGEHATAMAITEDDCVVCKSWPSADRWARRQVTEWLPVSDDQPVCDECVMTTWQRL |
Ga0310914_102020592 | 3300033289 | Soil | LWATFGEHAAAMPIPENDCVVCKGWRPADRWARRRITEWLPVGDDQPVCEECMMISWQRLIVSDARA |
Ga0310914_109094621 | 3300033289 | Soil | MPIPEDDCVVCRSWHPADRWARRQITEWQPVGDDQPVCDECMMTSWQRLLVWDDPR |
⦗Top⦘ |