NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F099779

Metagenome / Metatranscriptome Family F099779

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099779
Family Type Metagenome / Metatranscriptome
Number of Sequences 103
Average Sequence Length 42 residues
Representative Sequence RTFLVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVS
Number of Associated Samples 92
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(18.447 % of family members)
Environment Ontology (ENVO) Unclassified
(38.835 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.427 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1JGI10216J12902_1018076861
2Ga0062589_1022833582
3Ga0062595_1007171811
4Ga0070709_107559492
5Ga0070684_1004869701
6Ga0070686_1006244611
7Ga0070686_1019683293
8Ga0070693_1001498243
9Ga0066699_112171442
10Ga0068854_1009664802
11Ga0068854_1011637852
12Ga0068854_1013112492
13Ga0068856_1004148234
14Ga0068866_106261211
15Ga0075417_107208211
16Ga0075018_107785262
17Ga0097621_1018002361
18Ga0068871_1014593822
19Ga0074051_117768302
20Ga0074049_125249082
21Ga0079222_100349423
22Ga0079222_114335682
23Ga0075430_1015172941
24Ga0075431_1005645083
25Ga0075431_1020767821
26Ga0068865_1006984311
27Ga0075419_107275151
28Ga0075419_114182832
29Ga0075435_1015003052
30Ga0111539_121064701
31Ga0105245_116647871
32Ga0105243_109315192
33Ga0105243_114738952
34Ga0105249_101016591
35Ga0126380_122420812
36Ga0126322_11415582
37Ga0126377_108958413
38Ga0134127_101030551
39Ga0134127_120046811
40Ga0105246_101354691
41Ga0137381_103716031
42Ga0137381_109810381
43Ga0137381_111696581
44Ga0137378_108055181
45Ga0137367_108245752
46Ga0157285_102537941
47Ga0157308_100534373
48Ga0157301_103651671
49Ga0157302_103510282
50Ga0164303_102460851
51Ga0126369_122513061
52Ga0164307_103916271
53Ga0157371_109045351
54Ga0157369_117168641
55Ga0163163_129577592
56Ga0157377_109845772
57Ga0167652_10617502
58Ga0173480_101514283
59Ga0173480_106500982
60Ga0187785_107449701
61Ga0184610_11024411
62Ga0184632_100021381
63Ga0190265_126109912
64Ga0190272_130644383
65Ga0206354_117016702
66Ga0210378_103279352
67Ga0224712_103849493
68Ga0222622_113089691
69Ga0207699_109835862
70Ga0207705_107098401
71Ga0207654_103871241
72Ga0207693_102451551
73Ga0207663_113772421
74Ga0207687_112403292
75Ga0207700_111787912
76Ga0207644_106872511
77Ga0207690_117054981
78Ga0207670_113735222
79Ga0207669_106329911
80Ga0207676_116349502
81Ga0207698_104463983
82Ga0209267_11179421
83Ga0209577_106587131
84Ga0209843_10413981
85Ga0209689_14093952
86Ga0209177_101849991
87Ga0207428_103695221
88Ga0268265_109825001
89Ga0307319_103379762
90Ga0307316_103055242
91Ga0307288_101182213
92Ga0307282_106104611
93Ga0307299_100914542
94Ga0307287_102899791
95Ga0307302_105049742
96Ga0307286_102229462
97Ga0307278_103078522
98Ga0299914_111597642
99Ga0318502_110288181
100Ga0318524_101992972
101Ga0307415_1008518731
102Ga0335081_124413531
103Ga0247829_115896641
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 4.41%    β-sheet: 23.53%    Coil/Unstructured: 72.06%
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Variant

510152025303540RTFLVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVSSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Groundwater Sediment
Watersheds
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Glacier Forefield Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Soil
Agricultural Soil
Soil
Soil
Soil
Soil
Soil
Tropical Peatland
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Groundwater Sand
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
18.4%4.9%2.9%2.9%4.9%5.8%2.9%4.9%8.7%4.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10180768613300000956SoilPIDERTFLVDAEDPDNPTVTFGSFDSEGRPGALYRMLWGYPRA*
Ga0062589_10228335823300004156SoilTFLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0062595_10071718113300004479SoilFLVDAADPDTPTVTFGRFDSAGRPHVLYLMLWGLPRQGE*
Ga0070709_1075594923300005434Corn, Switchgrass And Miscanthus RhizosphereRTFLVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVS*
Ga0070684_10048697013300005535Corn RhizosphereDPDNPTVTFADPDAGGRPRLLYDMLWGLPRTGEDDRWTGR*
Ga0070686_10062446113300005544Switchgrass RhizosphereFLVDPADPDTPTVTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0070686_10196832933300005544Switchgrass RhizosphereDERTFLVDAADPDTPTVTFGAFDPGGRPQVLYSMLWGLPRLP*
Ga0070693_10014982433300005547Corn, Switchgrass And Miscanthus RhizosphereDALPVGERTFLVDQADPDAPTLTFGAFDAASRPHVLYEMLWGLPRAEG*
Ga0066699_1121714423300005561SoilARPVDDRTFVVDASDPDTPTVTFGAFDERGRPHALYLMLWALPRV*
Ga0068854_10096648023300005578Corn RhizosphereDSRTFLVDAKDPDSPTMTFGAFDSDGRPRVVYEMLWGLPRQE*
Ga0068854_10116378523300005578Corn RhizospherePLDHRTFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLPRVDA*
Ga0068854_10131124923300005578Corn RhizosphereFLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVGR*
Ga0068856_10041482343300005614Corn RhizosphereTALPIDGRAFLVDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG*
Ga0068866_1062612113300005718Miscanthus RhizosphereEAEALPVDERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0075417_1072082113300006049Populus RhizospherePIDDRTFLVDARDPDNPTVTFGAFDDSGRPGALYQMLWAFPRV*
Ga0075018_1077852623300006172WatershedsDRTFLIDAADPDNPTVTFANFDEAGRPHVLYLMLWALPRQTGGRA*
Ga0097621_10180023613300006237Miscanthus RhizosphereERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0068871_10145938223300006358Miscanthus RhizosphereTFLVDAADPDTPTITFGAFDSTGRPRVLYSMLWGLPRIS*
Ga0074051_1177683023300006572SoilPLDERTFLVDPADPDNPTVTFGAFDTAGRPQVLYDMLWGLPRLGE*
Ga0074049_1252490823300006580SoilIDRGDPDNPTATFAGFDDKGRPAVVYDMLWGLPRT*
Ga0079222_1003494233300006755Agricultural SoilFLTDPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRADG*
Ga0079222_1143356823300006755Agricultural SoilVDASDPDTPTVTFGAFGERGRPHALYLMLWALPRT*
Ga0075430_10151729413300006846Populus RhizosphereLIDAADPDNPTVTFGAFDARGRPQVLYNMLWGLPRIDR*
Ga0075431_10056450833300006847Populus RhizosphereTFLVDARDPDNPTVTFGAFDDSGRPGALYQMLWAFPRV*
Ga0075431_10207678213300006847Populus RhizosphereLIDPADPDNPTVTFGDFDAAGRPRVLYLMLWGLPRLDG*
Ga0068865_10069843113300006881Miscanthus RhizosphereALPVGERTFLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0075419_1072751513300006969Populus RhizosphereDRTFLVDARDPDNPTVAFGAFDDSGRPGALYQMLWAFPRV*
Ga0075419_1141828323300006969Populus RhizosphereGDGRTLHGLQLDERTFVVDPVDPDEPAVTFDRFDECGFPGVLYSMLWGLPRV*
Ga0075435_10150030523300007076Populus RhizosphereLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEG*
Ga0111539_1210647013300009094Populus RhizosphereTFVVDADSPDNPTVTFGNFGVDGRACVLYQMLWGLPRVAP*
Ga0105245_1166478713300009098Miscanthus RhizosphereLPVGARTFVVDALDPDDPTVTFGEFDPTGRPSVLYDMLWGLPRVDA*
Ga0105243_1093151923300009148Miscanthus RhizosphereFLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0105243_1147389523300009148Miscanthus RhizosphereVDALDPDDPTVTFGEFDPTGRPSVLYDMLWGLPRVDA*
Ga0105249_1010165913300009553Switchgrass RhizosphereERTFLVDAGDPDTPTVTFAGFDDDGRPGVLYDMIWGLTRKET*
Ga0126380_1224208123300010043Tropical Forest SoilLVDPADPDNPTVTFGAFDASGRPHVLYSMLWGLPRLDT*
Ga0126322_114155823300010143SoilLVDLADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVG*
Ga0126377_1089584133300010362Tropical Forest SoilEAIPIDGRTFLVDPADPDNPTVTFGEFDAAGRPRVLYLMLWGFPRVEA*
Ga0134127_1010305513300010399Terrestrial SoilALPIDGRAFLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVER*
Ga0134127_1200468113300010399Terrestrial SoilLPVDERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0105246_1013546913300011119Miscanthus RhizosphereDPSDPDNPTVTFAGSDAARRPQVLYVMLWGLPRLSETPEGR*
Ga0137381_1037160313300012207Vadose Zone SoilDRVFLLDPKDPDNPTVTFGRFDAAGRPHVLYLMLWGLPRLDDVTR*
Ga0137381_1098103813300012207Vadose Zone SoilLPLDERTFVANPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRLGR*
Ga0137381_1116965813300012207Vadose Zone SoilLPLDERTFVANPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRLGG*
Ga0137378_1080551813300012210Vadose Zone SoilRTFVADRADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRVGG*
Ga0137367_1082457523300012353Vadose Zone SoilLPLDERTFLVDVMNPDNPTVTFGAFDATGRPRVLYVMLWGLPRIDE*
Ga0157285_1025379413300012897SoilRRLDDRVFLVDPSDADNPTVTFGEFDPAGRPQVLYLMLWGLPRVQG*
Ga0157308_1005343733300012910SoilTFLVDADDPDTPTVTFGAFDDSGRPGVLYEMLWGLPRV*
Ga0157301_1036516713300012911SoilTFLIDARDPDSPTMTLGANGDDGRPRVLYSMLWGFPRTAG*
Ga0157302_1035102823300012915SoilPINRSTFVTNPEDPDTPTVTFAAFDADERPGVLYRMIWGSPRV*
Ga0164303_1024608513300012957SoilDNPTVTFAGSDAARRPQVLYLMLWGLPRLSETPEGR*
Ga0126369_1225130613300012971Tropical Forest SoilPISERVFLVDADDPDNPTVTFQDGVLYVMLWGLPRLFRR*
Ga0164307_1039162713300012987SoilTFLVDAADPDTPTITFGAFDPTGRPRVLYSMLWGLPRIS*
Ga0157371_1090453513300013102Corn RhizosphereFLVDPADPDNPTVTFGAFDDAGRPGVLYDMLWGLPRMG*
Ga0157369_1171686413300013105Corn RhizosphereRTFLVDPADPDTPTLTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0163163_1295775923300014325Switchgrass RhizosphereALPLDHRTFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLPRVDA*
Ga0157377_1098457723300014745Miscanthus RhizosphereGERTFLVDQADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0167652_106175023300015164Glacier Forefield SoilLVDPNDPDNPTMTFGAFDAEGRPQLLYVMLWGLPRG*
Ga0173480_1015142833300015200SoilDPDDPDNPTVTFGSFDAAGRPAVLYEMLWGLPRLA*
Ga0173480_1065009823300015200SoilLDADDPDTPTMTFGAFDADGRPRVVYEMLWGLPRQE*
Ga0187785_1074497013300017947Tropical PeatlandTFLVDRADPDNPTVSFGAFDADGKPGVVYRMLWGLPRLD
Ga0184610_110244113300017997Groundwater SedimentEGVALEALPVDAATFLVDADNPDTPTVTFGAFDDSGRPGALYQMLWGLPRV
Ga0184632_1000213813300018075Groundwater SedimentMREPSFVDTVDPDNPTVTFGAFDAAGRPRVLYLMLWGLPRLDD
Ga0190265_1261099123300018422SoilVVDAADPDNPTVTFGDFDVATGRPGELYDMLWELPRLDE
Ga0190272_1306443833300018429SoilDERTFVVDAADPDTPTVTFGAFDAGGRPGVLYLMLWALPRLAD
Ga0206354_1170167023300020081Corn, Switchgrass And Miscanthus RhizosphereVDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG
Ga0210378_1032793523300021073Groundwater SedimentRTFLVDPTDPDNPTVTFGAFDASGRPQVLYIMLWGLPRLDA
Ga0224712_1038494933300022467Corn, Switchgrass And Miscanthus RhizosphereVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVV
Ga0222622_1130896913300022756Groundwater SedimentAADPDTPTVTFGEFDDSGRPGVVYDMLWALPRDRS
Ga0207699_1098358623300025906Corn, Switchgrass And Miscanthus RhizosphereVGERTFLVDQADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG
Ga0207705_1070984013300025909Corn RhizosphereDRTFLLDPRDSDAPTVTFGAFDPAGRPQVLYNMLWGLPRQD
Ga0207654_1038712413300025911Corn RhizosphereEALPVGERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA
Ga0207693_1024515513300025915Corn, Switchgrass And Miscanthus RhizosphereFLVDPADPDNPTVTFGAFDTAGRPQVLYEMLWGLPRLGG
Ga0207663_1137724213300025916Corn, Switchgrass And Miscanthus RhizosphereAFLVDPADPDGPTVTFGAFDPAGRPHVLYDMLWGLPRVGP
Ga0207687_1124032923300025927Miscanthus RhizosphereMPIDGRAFLVDPADPDGPTVTFGAFDPAGRPHVLYDMLWGLPRVGP
Ga0207700_1117879123300025928Corn, Switchgrass And Miscanthus RhizosphereDDRTFLIDAADPDNPTITFADFDESGRPHVLYLMLWALPRQAYSVR
Ga0207644_1068725113300025931Switchgrass RhizosphereFLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVGR
Ga0207690_1170549813300025932Corn RhizosphereIDGRAFLVDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG
Ga0207670_1137352223300025936Switchgrass RhizosphereRTFLVDAADPDTPTVTFGAFDPGGRPQVLYSMLWGLPRLP
Ga0207669_1063299113300025937Miscanthus RhizosphereTFLVDAGDPDTPTVTFAGFDDGGRPGVLYDMIWGLTRRGT
Ga0207676_1163495023300026095Switchgrass RhizosphereVDADDPDTPTVTFGGFDATGRPGVLYTMLWGLPRLDE
Ga0207698_1044639833300026142Corn RhizosphereVDRRTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRAEG
Ga0209267_111794213300026331SoilEALPVDDRTFLVDAANPDNPTVTFGAFDGSGRPGALYVMLWGLPRVE
Ga0209577_1065871313300026552SoilLDDRTFVVDASDPDNPTVTFGAFDERGRPHALYLMLWGLPRV
Ga0209843_104139813300027511Groundwater SandTFVVDAQDPDVPTVTFGGFGASGRPAVLYQMLWGLPRV
Ga0209689_140939523300027748SoilFLVDTSDPDNPTVTFGAFDAARRPHVLYVMLWGLPRVDE
Ga0209177_1018499913300027775Agricultural SoilLPIDERTFLLDAEDEDWPTIAFGAFHDSGQPGVLYRMLWGLPRRTA
Ga0207428_1036952213300027907Populus RhizosphereTFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLSRVDA
Ga0268265_1098250013300028380Switchgrass RhizosphereRTFVVDPADPDCPSITFDAFDFAGRPNVVYLMLWGLSRLTAK
Ga0307319_1033797623300028722SoilVDAADPDTPTVTFGEFDDSGRPGVVYDMLWALPRDRS
Ga0307316_1030552423300028755SoilTLVVDVDDPDNPTVTFGEFDASGRPALLYDMLWGLPRM
Ga0307288_1011822133300028778SoilDERAFLVDAVDPDNPTVSFGAFDASGRPGVIYQMLWGLPRLDE
Ga0307282_1061046113300028784SoilLVDPVDPDNPTVTFGAFDAAGRPRVLYLMLWGLPRLDE
Ga0307299_1009145423300028793SoilALPLDGRTFLVDAADPDNPTVTFGAYDAAGRPQILYLMLWGLPRLQK
Ga0307287_1028997913300028796SoilLPLNNSTFLVDADDPDNPTVTFGGFDASGRPAVLYDMLWGLPRV
Ga0307302_1050497423300028814SoilTFVVDAEDPDVPTVTFGGFGASGRPAVLYQMLWGLPRV
Ga0307286_1022294623300028876SoilLDEQTVLVDAVDPDNPTVSFGAFDASGRPGVIYQMLWGLPRLDE
Ga0307278_1030785223300028878SoilAFPIDGRTFLVDAADPDNPTVTFGEFDAAGRPQILYLMLWGLPRIDE
Ga0299914_1115976423300031228SoilETFVVDASDPDNPTLTFGELDAAGRPRVLYLMLWGLPRLGD
Ga0318502_1102881813300031747SoilPIDERTFVVDLAEPDTPTVTFGGFDRAGNPAALYLMLWALPRLAGV
Ga0318524_1019929723300032067SoilFVADPADPDNPKVTFGAFDPSGRPQVLYDMLWGLPRLDR
Ga0307415_10085187313300032126RhizospherePLDDRTFVVDANDPDTPTVTFGGFGASGRPAVLYQMLWGLPRV
Ga0335081_1244135313300032892SoilLNDRTFVVDPADPDTPTMTFGDFDAAGRPQVLYEMLWGLPRVSR
Ga0247829_1158966413300033550SoilVDPTDPDNPTVTFGAFDASGRPQVLYIMLWGLPRLDA


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