Metagenome / Metatranscriptome Family F099779

Overview

Basic Information

• Family ID: F099779
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 103
• Average Sequence Length: 42 residues
• Representative Sequence: RTFLVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVS
• Number of Associated Samples: 92
• Number of Associated Scaffolds: 103

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 88
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.447 % of family members)
• Environment Ontology (ENVO): Unclassified (38.835 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (52.427 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 4.41%
  β-sheet: 23.53%
  Coil/Unstructured: 72.06%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00561	Abhydrolase_1	17.48
PF12697	Abhydrolase_6	5.83
PF01584	CheW	5.83
PF07676	PD40	2.91
PF11716	MDMPI_N	1.94
PF08386	Abhydrolase_4	1.94
PF07077	DUF1345	1.94
PF01638	HxlR	1.94
PF03992	ABM	1.94
PF00211	Guanylate_cyc	1.94
PF13561	adh_short_C2	1.94
PF00005	ABC_tran	0.97
PF01244	Peptidase_M19	0.97
PF14742	GDE_N_bis	0.97
PF12679	ABC2_membrane_2	0.97
PF05988	DUF899	0.97
PF00313	CSD	0.97
PF13673	Acetyltransf_10	0.97
PF00593	TonB_dep_Rec	0.97
PF01872	RibD_C	0.97
PF02518	HATPase_c	0.97
PF01266	DAO	0.97
PF08734	GYD	0.97
PF00009	GTP_EFTU	0.97
PF12146	Hydrolase_4	0.97
PF00266	Aminotran_5	0.97
PF00557	Peptidase_M24	0.97
PF00117	GATase	0.97
PF00027	cNMP_binding	0.97
PF04954	SIP	0.97
PF13545	HTH_Crp_2	0.97
PF00583	Acetyltransf_1	0.97
PF13489	Methyltransf_23	0.97
PF13474	SnoaL_3	0.97
PF02909	TetR_C_1	0.97
PF04993	TfoX_N	0.97
PF13458	Peripla_BP_6	0.97
PF02627	CMD	0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.94
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.94
COG4291	Uncharacterized membrane protein	Function unknown [S]	1.94
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.97
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.97
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	0.97
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.97
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.97
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG2375	NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains	Inorganic ion transport and metabolism [P]	0.97
COG3070	Transcriptional regulator of competence genes, TfoX/Sxy family	Transcription [K]	0.97
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.97
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.97

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.05%
Host-Associated	Host-Associated	34.95%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.22%
Plants	Host-Associated → Plants	34.95%
Aquatic	Environmental → Aquatic	5.83%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.30%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.74%
Sediment	Environmental → Aquatic → Sediment	3.88%
Roots	Host-Associated → Plants → Roots	2.91%
Freshwater	Environmental → Aquatic → Freshwater	1.94%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.42%
Loam	Environmental → Terrestrial → Soil → Loam	9.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.97%
Sand	Environmental → Terrestrial → Soil → Sand	0.97%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.88%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.97%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.97%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.97%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental
3300010143	Soil microbial communities from Mekong Delta, Cambodia to study soil gas exchange rates - MK-CA-DRY metaT (Metagenome Metatranscriptome)	Environmental
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated
3300015164	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4b, rock/ice/stream interface)	Environmental
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1018076861	3300000956	Soil	PIDERTFLVDAEDPDNPTVTFGSFDSEGRPGALYRMLWGYPRA*
Ga0062589_1022833582	3300004156	Soil	TFLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0062595_1007171811	3300004479	Soil	FLVDAADPDTPTVTFGRFDSAGRPHVLYLMLWGLPRQGE*
Ga0070709_107559492	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RTFLVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVS*
Ga0070684_1004869701	3300005535	Corn Rhizosphere	DPDNPTVTFADPDAGGRPRLLYDMLWGLPRTGEDDRWTGR*
Ga0070686_1006244611	3300005544	Switchgrass Rhizosphere	FLVDPADPDTPTVTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0070686_1019683293	3300005544	Switchgrass Rhizosphere	DERTFLVDAADPDTPTVTFGAFDPGGRPQVLYSMLWGLPRLP*
Ga0070693_1001498243	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	DALPVGERTFLVDQADPDAPTLTFGAFDAASRPHVLYEMLWGLPRAEG*
Ga0066699_112171442	3300005561	Soil	ARPVDDRTFVVDASDPDTPTVTFGAFDERGRPHALYLMLWALPRV*
Ga0068854_1009664802	3300005578	Corn Rhizosphere	DSRTFLVDAKDPDSPTMTFGAFDSDGRPRVVYEMLWGLPRQE*
Ga0068854_1011637852	3300005578	Corn Rhizosphere	PLDHRTFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLPRVDA*
Ga0068854_1013112492	3300005578	Corn Rhizosphere	FLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVGR*
Ga0068856_1004148234	3300005614	Corn Rhizosphere	TALPIDGRAFLVDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG*
Ga0068866_106261211	3300005718	Miscanthus Rhizosphere	EAEALPVDERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0075417_107208211	3300006049	Populus Rhizosphere	PIDDRTFLVDARDPDNPTVTFGAFDDSGRPGALYQMLWAFPRV*
Ga0075018_107785262	3300006172	Watersheds	DRTFLIDAADPDNPTVTFANFDEAGRPHVLYLMLWALPRQTGGRA*
Ga0097621_1018002361	3300006237	Miscanthus Rhizosphere	ERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0068871_1014593822	3300006358	Miscanthus Rhizosphere	TFLVDAADPDTPTITFGAFDSTGRPRVLYSMLWGLPRIS*
Ga0074051_117768302	3300006572	Soil	PLDERTFLVDPADPDNPTVTFGAFDTAGRPQVLYDMLWGLPRLGE*
Ga0074049_125249082	3300006580	Soil	IDRGDPDNPTATFAGFDDKGRPAVVYDMLWGLPRT*
Ga0079222_100349423	3300006755	Agricultural Soil	FLTDPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRADG*
Ga0079222_114335682	3300006755	Agricultural Soil	VDASDPDTPTVTFGAFGERGRPHALYLMLWALPRT*
Ga0075430_1015172941	3300006846	Populus Rhizosphere	LIDAADPDNPTVTFGAFDARGRPQVLYNMLWGLPRIDR*
Ga0075431_1005645083	3300006847	Populus Rhizosphere	TFLVDARDPDNPTVTFGAFDDSGRPGALYQMLWAFPRV*
Ga0075431_1020767821	3300006847	Populus Rhizosphere	LIDPADPDNPTVTFGDFDAAGRPRVLYLMLWGLPRLDG*
Ga0068865_1006984311	3300006881	Miscanthus Rhizosphere	ALPVGERTFLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0075419_107275151	3300006969	Populus Rhizosphere	DRTFLVDARDPDNPTVAFGAFDDSGRPGALYQMLWAFPRV*
Ga0075419_114182832	3300006969	Populus Rhizosphere	GDGRTLHGLQLDERTFVVDPVDPDEPAVTFDRFDECGFPGVLYSMLWGLPRV*
Ga0075435_1015003052	3300007076	Populus Rhizosphere	LVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEG*
Ga0111539_121064701	3300009094	Populus Rhizosphere	TFVVDADSPDNPTVTFGNFGVDGRACVLYQMLWGLPRVAP*
Ga0105245_116647871	3300009098	Miscanthus Rhizosphere	LPVGARTFVVDALDPDDPTVTFGEFDPTGRPSVLYDMLWGLPRVDA*
Ga0105243_109315192	3300009148	Miscanthus Rhizosphere	FLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0105243_114738952	3300009148	Miscanthus Rhizosphere	VDALDPDDPTVTFGEFDPTGRPSVLYDMLWGLPRVDA*
Ga0105249_101016591	3300009553	Switchgrass Rhizosphere	ERTFLVDAGDPDTPTVTFAGFDDDGRPGVLYDMIWGLTRKET*
Ga0126380_122420812	3300010043	Tropical Forest Soil	LVDPADPDNPTVTFGAFDASGRPHVLYSMLWGLPRLDT*
Ga0126322_11415582	3300010143	Soil	LVDLADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVG*
Ga0126377_108958413	3300010362	Tropical Forest Soil	EAIPIDGRTFLVDPADPDNPTVTFGEFDAAGRPRVLYLMLWGFPRVEA*
Ga0134127_101030551	3300010399	Terrestrial Soil	ALPIDGRAFLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVER*
Ga0134127_120046811	3300010399	Terrestrial Soil	LPVDERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0105246_101354691	3300011119	Miscanthus Rhizosphere	DPSDPDNPTVTFAGSDAARRPQVLYVMLWGLPRLSETPEGR*
Ga0137381_103716031	3300012207	Vadose Zone Soil	DRVFLLDPKDPDNPTVTFGRFDAAGRPHVLYLMLWGLPRLDDVTR*
Ga0137381_109810381	3300012207	Vadose Zone Soil	LPLDERTFVANPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRLGR*
Ga0137381_111696581	3300012207	Vadose Zone Soil	LPLDERTFVANPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRLGG*
Ga0137378_108055181	3300012210	Vadose Zone Soil	RTFVADRADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRVGG*
Ga0137367_108245752	3300012353	Vadose Zone Soil	LPLDERTFLVDVMNPDNPTVTFGAFDATGRPRVLYVMLWGLPRIDE*
Ga0157285_102537941	3300012897	Soil	RRLDDRVFLVDPSDADNPTVTFGEFDPAGRPQVLYLMLWGLPRVQG*
Ga0157308_100534373	3300012910	Soil	TFLVDADDPDTPTVTFGAFDDSGRPGVLYEMLWGLPRV*
Ga0157301_103651671	3300012911	Soil	TFLIDARDPDSPTMTLGANGDDGRPRVLYSMLWGFPRTAG*
Ga0157302_103510282	3300012915	Soil	PINRSTFVTNPEDPDTPTVTFAAFDADERPGVLYRMIWGSPRV*
Ga0164303_102460851	3300012957	Soil	DNPTVTFAGSDAARRPQVLYLMLWGLPRLSETPEGR*
Ga0126369_122513061	3300012971	Tropical Forest Soil	PISERVFLVDADDPDNPTVTFQDGVLYVMLWGLPRLFRR*
Ga0164307_103916271	3300012987	Soil	TFLVDAADPDTPTITFGAFDPTGRPRVLYSMLWGLPRIS*
Ga0157371_109045351	3300013102	Corn Rhizosphere	FLVDPADPDNPTVTFGAFDDAGRPGVLYDMLWGLPRMG*
Ga0157369_117168641	3300013105	Corn Rhizosphere	RTFLVDPADPDTPTLTFGAFDAADRPRVLYEMLWGLPRVEA*
Ga0163163_129577592	3300014325	Switchgrass Rhizosphere	ALPLDHRTFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLPRVDA*
Ga0157377_109845772	3300014745	Miscanthus Rhizosphere	GERTFLVDQADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG*
Ga0167652_10617502	3300015164	Glacier Forefield Soil	LVDPNDPDNPTMTFGAFDAEGRPQLLYVMLWGLPRG*
Ga0173480_101514283	3300015200	Soil	DPDDPDNPTVTFGSFDAAGRPAVLYEMLWGLPRLA*
Ga0173480_106500982	3300015200	Soil	LDADDPDTPTMTFGAFDADGRPRVVYEMLWGLPRQE*
Ga0187785_107449701	3300017947	Tropical Peatland	TFLVDRADPDNPTVSFGAFDADGKPGVVYRMLWGLPRLD
Ga0184610_11024411	3300017997	Groundwater Sediment	EGVALEALPVDAATFLVDADNPDTPTVTFGAFDDSGRPGALYQMLWGLPRV
Ga0184632_100021381	3300018075	Groundwater Sediment	MREPSFVDTVDPDNPTVTFGAFDAAGRPRVLYLMLWGLPRLDD
Ga0190265_126109912	3300018422	Soil	VVDAADPDNPTVTFGDFDVATGRPGELYDMLWELPRLDE
Ga0190272_130644383	3300018429	Soil	DERTFVVDAADPDTPTVTFGAFDAGGRPGVLYLMLWALPRLAD
Ga0206354_117016702	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	VDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG
Ga0210378_103279352	3300021073	Groundwater Sediment	RTFLVDPTDPDNPTVTFGAFDASGRPQVLYIMLWGLPRLDA
Ga0224712_103849493	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	VDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVV
Ga0222622_113089691	3300022756	Groundwater Sediment	AADPDTPTVTFGEFDDSGRPGVVYDMLWALPRDRS
Ga0207699_109835862	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VGERTFLVDQADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG
Ga0207705_107098401	3300025909	Corn Rhizosphere	DRTFLLDPRDSDAPTVTFGAFDPAGRPQVLYNMLWGLPRQD
Ga0207654_103871241	3300025911	Corn Rhizosphere	EALPVGERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA
Ga0207693_102451551	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	FLVDPADPDNPTVTFGAFDTAGRPQVLYEMLWGLPRLGG
Ga0207663_113772421	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AFLVDPADPDGPTVTFGAFDPAGRPHVLYDMLWGLPRVGP
Ga0207687_112403292	3300025927	Miscanthus Rhizosphere	MPIDGRAFLVDPADPDGPTVTFGAFDPAGRPHVLYDMLWGLPRVGP
Ga0207700_111787912	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	DDRTFLIDAADPDNPTITFADFDESGRPHVLYLMLWALPRQAYSVR
Ga0207644_106872511	3300025931	Switchgrass Rhizosphere	FLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVGR
Ga0207690_117054981	3300025932	Corn Rhizosphere	IDGRAFLVDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG
Ga0207670_113735222	3300025936	Switchgrass Rhizosphere	RTFLVDAADPDTPTVTFGAFDPGGRPQVLYSMLWGLPRLP
Ga0207669_106329911	3300025937	Miscanthus Rhizosphere	TFLVDAGDPDTPTVTFAGFDDGGRPGVLYDMIWGLTRRGT
Ga0207676_116349502	3300026095	Switchgrass Rhizosphere	VDADDPDTPTVTFGGFDATGRPGVLYTMLWGLPRLDE
Ga0207698_104463983	3300026142	Corn Rhizosphere	VDRRTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRAEG
Ga0209267_11179421	3300026331	Soil	EALPVDDRTFLVDAANPDNPTVTFGAFDGSGRPGALYVMLWGLPRVE
Ga0209577_106587131	3300026552	Soil	LDDRTFVVDASDPDNPTVTFGAFDERGRPHALYLMLWGLPRV
Ga0209843_10413981	3300027511	Groundwater Sand	TFVVDAQDPDVPTVTFGGFGASGRPAVLYQMLWGLPRV
Ga0209689_14093952	3300027748	Soil	FLVDTSDPDNPTVTFGAFDAARRPHVLYVMLWGLPRVDE
Ga0209177_101849991	3300027775	Agricultural Soil	LPIDERTFLLDAEDEDWPTIAFGAFHDSGQPGVLYRMLWGLPRRTA
Ga0207428_103695221	3300027907	Populus Rhizosphere	TFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLSRVDA
Ga0268265_109825001	3300028380	Switchgrass Rhizosphere	RTFVVDPADPDCPSITFDAFDFAGRPNVVYLMLWGLSRLTAK
Ga0307319_103379762	3300028722	Soil	VDAADPDTPTVTFGEFDDSGRPGVVYDMLWALPRDRS
Ga0307316_103055242	3300028755	Soil	TLVVDVDDPDNPTVTFGEFDASGRPALLYDMLWGLPRM
Ga0307288_101182213	3300028778	Soil	DERAFLVDAVDPDNPTVSFGAFDASGRPGVIYQMLWGLPRLDE
Ga0307282_106104611	3300028784	Soil	LVDPVDPDNPTVTFGAFDAAGRPRVLYLMLWGLPRLDE
Ga0307299_100914542	3300028793	Soil	ALPLDGRTFLVDAADPDNPTVTFGAYDAAGRPQILYLMLWGLPRLQK
Ga0307287_102899791	3300028796	Soil	LPLNNSTFLVDADDPDNPTVTFGGFDASGRPAVLYDMLWGLPRV
Ga0307302_105049742	3300028814	Soil	TFVVDAEDPDVPTVTFGGFGASGRPAVLYQMLWGLPRV
Ga0307286_102229462	3300028876	Soil	LDEQTVLVDAVDPDNPTVSFGAFDASGRPGVIYQMLWGLPRLDE
Ga0307278_103078522	3300028878	Soil	AFPIDGRTFLVDAADPDNPTVTFGEFDAAGRPQILYLMLWGLPRIDE
Ga0299914_111597642	3300031228	Soil	ETFVVDASDPDNPTLTFGELDAAGRPRVLYLMLWGLPRLGD
Ga0318502_110288181	3300031747	Soil	PIDERTFVVDLAEPDTPTVTFGGFDRAGNPAALYLMLWALPRLAGV
Ga0318524_101992972	3300032067	Soil	FVADPADPDNPKVTFGAFDPSGRPQVLYDMLWGLPRLDR
Ga0307415_1008518731	3300032126	Rhizosphere	PLDDRTFVVDANDPDTPTVTFGGFGASGRPAVLYQMLWGLPRV
Ga0335081_124413531	3300032892	Soil	LNDRTFVVDPADPDTPTMTFGDFDAAGRPQVLYEMLWGLPRVSR
Ga0247829_115896641	3300033550	Soil	VDPTDPDNPTVTFGAFDASGRPQVLYIMLWGLPRLDA