Basic Information | |
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Family ID | F099779 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 103 |
Average Sequence Length | 42 residues |
Representative Sequence | RTFLVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVS |
Number of Associated Samples | 92 |
Number of Associated Scaffolds | 103 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 88 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.41 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.447 % of family members) |
Environment Ontology (ENVO) | Unclassified (38.835 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (52.427 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 4.41% β-sheet: 23.53% Coil/Unstructured: 72.06% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.41 |
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Visualization |
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Groundwater Sediment Soil Groundwater Sediment Watersheds Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Glacier Forefield Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Agricultural Soil Soil Soil Soil Soil Soil Tropical Peatland Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Groundwater Sand Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1018076861 | 3300000956 | Soil | PIDERTFLVDAEDPDNPTVTFGSFDSEGRPGALYRMLWGYPRA* |
Ga0062589_1022833582 | 3300004156 | Soil | TFLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG* |
Ga0062595_1007171811 | 3300004479 | Soil | FLVDAADPDTPTVTFGRFDSAGRPHVLYLMLWGLPRQGE* |
Ga0070709_107559492 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | RTFLVDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVS* |
Ga0070684_1004869701 | 3300005535 | Corn Rhizosphere | DPDNPTVTFADPDAGGRPRLLYDMLWGLPRTGEDDRWTGR* |
Ga0070686_1006244611 | 3300005544 | Switchgrass Rhizosphere | FLVDPADPDTPTVTFGAFDAAGRPHVLYEMLWGLPRAEG* |
Ga0070686_1019683293 | 3300005544 | Switchgrass Rhizosphere | DERTFLVDAADPDTPTVTFGAFDPGGRPQVLYSMLWGLPRLP* |
Ga0070693_1001498243 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | DALPVGERTFLVDQADPDAPTLTFGAFDAASRPHVLYEMLWGLPRAEG* |
Ga0066699_112171442 | 3300005561 | Soil | ARPVDDRTFVVDASDPDTPTVTFGAFDERGRPHALYLMLWALPRV* |
Ga0068854_1009664802 | 3300005578 | Corn Rhizosphere | DSRTFLVDAKDPDSPTMTFGAFDSDGRPRVVYEMLWGLPRQE* |
Ga0068854_1011637852 | 3300005578 | Corn Rhizosphere | PLDHRTFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLPRVDA* |
Ga0068854_1013112492 | 3300005578 | Corn Rhizosphere | FLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVGR* |
Ga0068856_1004148234 | 3300005614 | Corn Rhizosphere | TALPIDGRAFLVDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG* |
Ga0068866_106261211 | 3300005718 | Miscanthus Rhizosphere | EAEALPVDERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA* |
Ga0075417_107208211 | 3300006049 | Populus Rhizosphere | PIDDRTFLVDARDPDNPTVTFGAFDDSGRPGALYQMLWAFPRV* |
Ga0075018_107785262 | 3300006172 | Watersheds | DRTFLIDAADPDNPTVTFANFDEAGRPHVLYLMLWALPRQTGGRA* |
Ga0097621_1018002361 | 3300006237 | Miscanthus Rhizosphere | ERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA* |
Ga0068871_1014593822 | 3300006358 | Miscanthus Rhizosphere | TFLVDAADPDTPTITFGAFDSTGRPRVLYSMLWGLPRIS* |
Ga0074051_117768302 | 3300006572 | Soil | PLDERTFLVDPADPDNPTVTFGAFDTAGRPQVLYDMLWGLPRLGE* |
Ga0074049_125249082 | 3300006580 | Soil | IDRGDPDNPTATFAGFDDKGRPAVVYDMLWGLPRT* |
Ga0079222_100349423 | 3300006755 | Agricultural Soil | FLTDPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRADG* |
Ga0079222_114335682 | 3300006755 | Agricultural Soil | VDASDPDTPTVTFGAFGERGRPHALYLMLWALPRT* |
Ga0075430_1015172941 | 3300006846 | Populus Rhizosphere | LIDAADPDNPTVTFGAFDARGRPQVLYNMLWGLPRIDR* |
Ga0075431_1005645083 | 3300006847 | Populus Rhizosphere | TFLVDARDPDNPTVTFGAFDDSGRPGALYQMLWAFPRV* |
Ga0075431_1020767821 | 3300006847 | Populus Rhizosphere | LIDPADPDNPTVTFGDFDAAGRPRVLYLMLWGLPRLDG* |
Ga0068865_1006984311 | 3300006881 | Miscanthus Rhizosphere | ALPVGERTFLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG* |
Ga0075419_107275151 | 3300006969 | Populus Rhizosphere | DRTFLVDARDPDNPTVAFGAFDDSGRPGALYQMLWAFPRV* |
Ga0075419_114182832 | 3300006969 | Populus Rhizosphere | GDGRTLHGLQLDERTFVVDPVDPDEPAVTFDRFDECGFPGVLYSMLWGLPRV* |
Ga0075435_1015003052 | 3300007076 | Populus Rhizosphere | LVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEG* |
Ga0111539_121064701 | 3300009094 | Populus Rhizosphere | TFVVDADSPDNPTVTFGNFGVDGRACVLYQMLWGLPRVAP* |
Ga0105245_116647871 | 3300009098 | Miscanthus Rhizosphere | LPVGARTFVVDALDPDDPTVTFGEFDPTGRPSVLYDMLWGLPRVDA* |
Ga0105243_109315192 | 3300009148 | Miscanthus Rhizosphere | FLVDPADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG* |
Ga0105243_114738952 | 3300009148 | Miscanthus Rhizosphere | VDALDPDDPTVTFGEFDPTGRPSVLYDMLWGLPRVDA* |
Ga0105249_101016591 | 3300009553 | Switchgrass Rhizosphere | ERTFLVDAGDPDTPTVTFAGFDDDGRPGVLYDMIWGLTRKET* |
Ga0126380_122420812 | 3300010043 | Tropical Forest Soil | LVDPADPDNPTVTFGAFDASGRPHVLYSMLWGLPRLDT* |
Ga0126322_11415582 | 3300010143 | Soil | LVDLADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVG* |
Ga0126377_108958413 | 3300010362 | Tropical Forest Soil | EAIPIDGRTFLVDPADPDNPTVTFGEFDAAGRPRVLYLMLWGFPRVEA* |
Ga0134127_101030551 | 3300010399 | Terrestrial Soil | ALPIDGRAFLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVER* |
Ga0134127_120046811 | 3300010399 | Terrestrial Soil | LPVDERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA* |
Ga0105246_101354691 | 3300011119 | Miscanthus Rhizosphere | DPSDPDNPTVTFAGSDAARRPQVLYVMLWGLPRLSETPEGR* |
Ga0137381_103716031 | 3300012207 | Vadose Zone Soil | DRVFLLDPKDPDNPTVTFGRFDAAGRPHVLYLMLWGLPRLDDVTR* |
Ga0137381_109810381 | 3300012207 | Vadose Zone Soil | LPLDERTFVANPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRLGR* |
Ga0137381_111696581 | 3300012207 | Vadose Zone Soil | LPLDERTFVANPADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRLGG* |
Ga0137378_108055181 | 3300012210 | Vadose Zone Soil | RTFVADRADPDNPAVTFGAFDAAGRPRVLYDMLWGLPRVGG* |
Ga0137367_108245752 | 3300012353 | Vadose Zone Soil | LPLDERTFLVDVMNPDNPTVTFGAFDATGRPRVLYVMLWGLPRIDE* |
Ga0157285_102537941 | 3300012897 | Soil | RRLDDRVFLVDPSDADNPTVTFGEFDPAGRPQVLYLMLWGLPRVQG* |
Ga0157308_100534373 | 3300012910 | Soil | TFLVDADDPDTPTVTFGAFDDSGRPGVLYEMLWGLPRV* |
Ga0157301_103651671 | 3300012911 | Soil | TFLIDARDPDSPTMTLGANGDDGRPRVLYSMLWGFPRTAG* |
Ga0157302_103510282 | 3300012915 | Soil | PINRSTFVTNPEDPDTPTVTFAAFDADERPGVLYRMIWGSPRV* |
Ga0164303_102460851 | 3300012957 | Soil | DNPTVTFAGSDAARRPQVLYLMLWGLPRLSETPEGR* |
Ga0126369_122513061 | 3300012971 | Tropical Forest Soil | PISERVFLVDADDPDNPTVTFQDGVLYVMLWGLPRLFRR* |
Ga0164307_103916271 | 3300012987 | Soil | TFLVDAADPDTPTITFGAFDPTGRPRVLYSMLWGLPRIS* |
Ga0157371_109045351 | 3300013102 | Corn Rhizosphere | FLVDPADPDNPTVTFGAFDDAGRPGVLYDMLWGLPRMG* |
Ga0157369_117168641 | 3300013105 | Corn Rhizosphere | RTFLVDPADPDTPTLTFGAFDAADRPRVLYEMLWGLPRVEA* |
Ga0163163_129577592 | 3300014325 | Switchgrass Rhizosphere | ALPLDHRTFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLPRVDA* |
Ga0157377_109845772 | 3300014745 | Miscanthus Rhizosphere | GERTFLVDQADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG* |
Ga0167652_10617502 | 3300015164 | Glacier Forefield Soil | LVDPNDPDNPTMTFGAFDAEGRPQLLYVMLWGLPRG* |
Ga0173480_101514283 | 3300015200 | Soil | DPDDPDNPTVTFGSFDAAGRPAVLYEMLWGLPRLA* |
Ga0173480_106500982 | 3300015200 | Soil | LDADDPDTPTMTFGAFDADGRPRVVYEMLWGLPRQE* |
Ga0187785_107449701 | 3300017947 | Tropical Peatland | TFLVDRADPDNPTVSFGAFDADGKPGVVYRMLWGLPRLD |
Ga0184610_11024411 | 3300017997 | Groundwater Sediment | EGVALEALPVDAATFLVDADNPDTPTVTFGAFDDSGRPGALYQMLWGLPRV |
Ga0184632_100021381 | 3300018075 | Groundwater Sediment | MREPSFVDTVDPDNPTVTFGAFDAAGRPRVLYLMLWGLPRLDD |
Ga0190265_126109912 | 3300018422 | Soil | VVDAADPDNPTVTFGDFDVATGRPGELYDMLWELPRLDE |
Ga0190272_130644383 | 3300018429 | Soil | DERTFVVDAADPDTPTVTFGAFDAGGRPGVLYLMLWALPRLAD |
Ga0206354_117016702 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | VDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG |
Ga0210378_103279352 | 3300021073 | Groundwater Sediment | RTFLVDPTDPDNPTVTFGAFDASGRPQVLYIMLWGLPRLDA |
Ga0224712_103849493 | 3300022467 | Corn, Switchgrass And Miscanthus Rhizosphere | VDPADPDNPTVTFGAFDASGRPGVLYEMLWGLPRVV |
Ga0222622_113089691 | 3300022756 | Groundwater Sediment | AADPDTPTVTFGEFDDSGRPGVVYDMLWALPRDRS |
Ga0207699_109835862 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | VGERTFLVDQADPDAPTLTFGAFDAAGRPHVLYEMLWGLPRAEG |
Ga0207705_107098401 | 3300025909 | Corn Rhizosphere | DRTFLLDPRDSDAPTVTFGAFDPAGRPQVLYNMLWGLPRQD |
Ga0207654_103871241 | 3300025911 | Corn Rhizosphere | EALPVGERTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRVEA |
Ga0207693_102451551 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | FLVDPADPDNPTVTFGAFDTAGRPQVLYEMLWGLPRLGG |
Ga0207663_113772421 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | AFLVDPADPDGPTVTFGAFDPAGRPHVLYDMLWGLPRVGP |
Ga0207687_112403292 | 3300025927 | Miscanthus Rhizosphere | MPIDGRAFLVDPADPDGPTVTFGAFDPAGRPHVLYDMLWGLPRVGP |
Ga0207700_111787912 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | DDRTFLIDAADPDNPTITFADFDESGRPHVLYLMLWALPRQAYSVR |
Ga0207644_106872511 | 3300025931 | Switchgrass Rhizosphere | FLVDAADPDGPTVMFGAFDATGRPQMLYDMLWGLPRVGR |
Ga0207690_117054981 | 3300025932 | Corn Rhizosphere | IDGRAFLVDSADPDGPTVMFGAFDSAGRPHVLYDMLWGLPRVGG |
Ga0207670_113735222 | 3300025936 | Switchgrass Rhizosphere | RTFLVDAADPDTPTVTFGAFDPGGRPQVLYSMLWGLPRLP |
Ga0207669_106329911 | 3300025937 | Miscanthus Rhizosphere | TFLVDAGDPDTPTVTFAGFDDGGRPGVLYDMIWGLTRRGT |
Ga0207676_116349502 | 3300026095 | Switchgrass Rhizosphere | VDADDPDTPTVTFGGFDATGRPGVLYTMLWGLPRLDE |
Ga0207698_104463983 | 3300026142 | Corn Rhizosphere | VDRRTFLVDPADPDTPTVTFGAFDAADRPRVLYEMLWGLPRAEG |
Ga0209267_11179421 | 3300026331 | Soil | EALPVDDRTFLVDAANPDNPTVTFGAFDGSGRPGALYVMLWGLPRVE |
Ga0209577_106587131 | 3300026552 | Soil | LDDRTFVVDASDPDNPTVTFGAFDERGRPHALYLMLWGLPRV |
Ga0209843_10413981 | 3300027511 | Groundwater Sand | TFVVDAQDPDVPTVTFGGFGASGRPAVLYQMLWGLPRV |
Ga0209689_14093952 | 3300027748 | Soil | FLVDTSDPDNPTVTFGAFDAARRPHVLYVMLWGLPRVDE |
Ga0209177_101849991 | 3300027775 | Agricultural Soil | LPIDERTFLLDAEDEDWPTIAFGAFHDSGQPGVLYRMLWGLPRRTA |
Ga0207428_103695221 | 3300027907 | Populus Rhizosphere | TFVVDALDPDDPTVTFGEFDPTGRPTVLYDMLWGLSRVDA |
Ga0268265_109825001 | 3300028380 | Switchgrass Rhizosphere | RTFVVDPADPDCPSITFDAFDFAGRPNVVYLMLWGLSRLTAK |
Ga0307319_103379762 | 3300028722 | Soil | VDAADPDTPTVTFGEFDDSGRPGVVYDMLWALPRDRS |
Ga0307316_103055242 | 3300028755 | Soil | TLVVDVDDPDNPTVTFGEFDASGRPALLYDMLWGLPRM |
Ga0307288_101182213 | 3300028778 | Soil | DERAFLVDAVDPDNPTVSFGAFDASGRPGVIYQMLWGLPRLDE |
Ga0307282_106104611 | 3300028784 | Soil | LVDPVDPDNPTVTFGAFDAAGRPRVLYLMLWGLPRLDE |
Ga0307299_100914542 | 3300028793 | Soil | ALPLDGRTFLVDAADPDNPTVTFGAYDAAGRPQILYLMLWGLPRLQK |
Ga0307287_102899791 | 3300028796 | Soil | LPLNNSTFLVDADDPDNPTVTFGGFDASGRPAVLYDMLWGLPRV |
Ga0307302_105049742 | 3300028814 | Soil | TFVVDAEDPDVPTVTFGGFGASGRPAVLYQMLWGLPRV |
Ga0307286_102229462 | 3300028876 | Soil | LDEQTVLVDAVDPDNPTVSFGAFDASGRPGVIYQMLWGLPRLDE |
Ga0307278_103078522 | 3300028878 | Soil | AFPIDGRTFLVDAADPDNPTVTFGEFDAAGRPQILYLMLWGLPRIDE |
Ga0299914_111597642 | 3300031228 | Soil | ETFVVDASDPDNPTLTFGELDAAGRPRVLYLMLWGLPRLGD |
Ga0318502_110288181 | 3300031747 | Soil | PIDERTFVVDLAEPDTPTVTFGGFDRAGNPAALYLMLWALPRLAGV |
Ga0318524_101992972 | 3300032067 | Soil | FVADPADPDNPKVTFGAFDPSGRPQVLYDMLWGLPRLDR |
Ga0307415_1008518731 | 3300032126 | Rhizosphere | PLDDRTFVVDANDPDTPTVTFGGFGASGRPAVLYQMLWGLPRV |
Ga0335081_124413531 | 3300032892 | Soil | LNDRTFVVDPADPDTPTMTFGDFDAAGRPQVLYEMLWGLPRVSR |
Ga0247829_115896641 | 3300033550 | Soil | VDPTDPDNPTVTFGAFDASGRPQVLYIMLWGLPRLDA |
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