 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F099717 |
| Family Type | Metagenome |
| Number of Sequences | 103 |
| Average Sequence Length | 49 residues |
| Representative Sequence | VVSGQLEDSLRHEIESYIEGRLGGIKQEIAALQSQLNESLSRLLDRQ |
| Number of Associated Samples | 85 |
| Number of Associated Scaffolds | 103 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | No |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 33.33 % |
| % of genes near scaffold ends (potentially truncated) | 5.83 % |
| % of genes from short scaffolds (< 2000 bps) | 4.85 % |
| Associated GOLD sequencing projects | 82 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.64 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (94.175 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.359 % of family members) |
| Environment Ontology (ENVO) | Unclassified (53.398 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (66.019 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.64 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 103 Family Scaffolds |
|---|---|---|
| PF00072 | Response_reg | 59.22 |
| PF00891 | Methyltransf_2 | 2.91 |
| PF01979 | Amidohydro_1 | 2.91 |
| PF08241 | Methyltransf_11 | 1.94 |
| PF16864 | Dimerisation2 | 1.94 |
| PF13692 | Glyco_trans_1_4 | 0.97 |
| PF01381 | HTH_3 | 0.97 |
| PF00270 | DEAD | 0.97 |
| PF00171 | Aldedh | 0.97 |
| PF00266 | Aminotran_5 | 0.97 |
| PF13489 | Methyltransf_23 | 0.97 |
| PF14534 | DUF4440 | 0.97 |
| PF00144 | Beta-lactamase | 0.97 |
| COG ID | Name | Functional Category | % Frequency in 103 Family Scaffolds |
|---|---|---|---|
| COG0014 | Gamma-glutamyl phosphate reductase | Amino acid transport and metabolism [E] | 0.97 |
| COG1012 | Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase | Lipid transport and metabolism [I] | 0.97 |
| COG1680 | CubicO group peptidase, beta-lactamase class C family | Defense mechanisms [V] | 0.97 |
| COG1686 | D-alanyl-D-alanine carboxypeptidase | Cell wall/membrane/envelope biogenesis [M] | 0.97 |
| COG2367 | Beta-lactamase class A | Defense mechanisms [V] | 0.97 |
| COG4230 | Delta 1-pyrroline-5-carboxylate dehydrogenase | Amino acid transport and metabolism [E] | 0.97 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 94.17 % |
| All Organisms | root | All Organisms | 5.83 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005290|Ga0065712_10257271 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 945 | Open in IMG/M |
| 3300010373|Ga0134128_10688049 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1136 | Open in IMG/M |
| 3300014325|Ga0163163_10016831 | All Organisms → cellular organisms → Bacteria | 6805 | Open in IMG/M |
| 3300014325|Ga0163163_10297234 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1667 | Open in IMG/M |
| 3300025940|Ga0207691_10379864 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1206 | Open in IMG/M |
| 3300025945|Ga0207679_10531842 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 1053 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 21.36% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 7.77% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 6.80% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 6.80% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.85% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.88% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 3.88% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 2.91% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 2.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.91% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.91% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.91% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.91% |
| Soil | Environmental → Terrestrial → Soil → Loam → Grasslands → Soil | 1.94% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 1.94% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.94% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 1.94% |
| Wetland Sediment | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment | 0.97% |
| Soil | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil | 0.97% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.97% |
| Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.97% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 0.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 0.97% |
| Permafrost | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost | 0.97% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.97% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.97% |
| Soil | Environmental → Terrestrial → Soil → Loam → Unclassified → Soil | 0.97% |
| Bio-Ooze | Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Tabebuia Heterophylla Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere | 0.97% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.97% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.97% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000559 | Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly | Environmental | Open in IMG/M |
| 3300000787 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000955 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300000956 | Soil microbial communities from Great Prairies - Kansas, Native Prairie soil | Environmental | Open in IMG/M |
| 3300004479 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs | Environmental | Open in IMG/M |
| 3300004779 | Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh | Environmental | Open in IMG/M |
| 3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 | Host-Associated | Open in IMG/M |
| 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Host-Associated | Open in IMG/M |
| 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Environmental | Open in IMG/M |
| 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Environmental | Open in IMG/M |
| 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Environmental | Open in IMG/M |
| 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
| 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Environmental | Open in IMG/M |
| 3300005545 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG | Environmental | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Host-Associated | Open in IMG/M |
| 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Host-Associated | Open in IMG/M |
| 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Host-Associated | Open in IMG/M |
| 3300006046 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101 | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006797 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108 | Environmental | Open in IMG/M |
| 3300007255 | Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 | Environmental | Open in IMG/M |
| 3300009089 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG | Environmental | Open in IMG/M |
| 3300009094 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009100 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 | Host-Associated | Open in IMG/M |
| 3300009143 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 | Environmental | Open in IMG/M |
| 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
| 3300010047 | Tropical forest soil microbial communities from Panama - MetaG Plot_30 | Environmental | Open in IMG/M |
| 3300010301 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015 | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300011270 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG | Environmental | Open in IMG/M |
| 3300011271 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG | Environmental | Open in IMG/M |
| 3300012189 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG | Environmental | Open in IMG/M |
| 3300012198 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012201 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012210 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012285 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG | Environmental | Open in IMG/M |
| 3300012532 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG | Environmental | Open in IMG/M |
| 3300012582 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG | Environmental | Open in IMG/M |
| 3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
| 3300012904 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1 | Environmental | Open in IMG/M |
| 3300012918 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG | Environmental | Open in IMG/M |
| 3300012944 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300012955 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG | Environmental | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013772 | Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M | Environmental | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014877 | Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT366_16_10D | Environmental | Open in IMG/M |
| 3300015069 | Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4C, Ice margin, adjacent to proglacial lake | Environmental | Open in IMG/M |
| 3300015245 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300015371 | Combined assembly of cpr5 and col0 rhizosphere and soil | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300018061 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1 | Environmental | Open in IMG/M |
| 3300018066 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1 | Environmental | Open in IMG/M |
| 3300018076 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex | Environmental | Open in IMG/M |
| 3300018429 | Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T | Environmental | Open in IMG/M |
| 3300018469 | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T | Environmental | Open in IMG/M |
| 3300019458 | Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG | Environmental | Open in IMG/M |
| 3300019767 | Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T | Environmental | Open in IMG/M |
| 3300020003 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2 | Environmental | Open in IMG/M |
| 3300022534 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1 | Environmental | Open in IMG/M |
| 3300025325 | Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes) | Environmental | Open in IMG/M |
| 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300027378 | Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300031152 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S | Environmental | Open in IMG/M |
| 3300032075 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| F14TC_1051923892 | 3300000559 | Soil | MEEQTVVSGQLEDSLRNEIESYIEGRLMAHSKIAQLQSELNESL |
| F14TC_1068993573 | 3300000559 | Soil | MTYTEERTVVTGQLEDSLRHEIESYIEGRLTSIKEEISELQSQLNDSISRLLERQTEV |
| JGI11643J11755_113874733 | 3300000787 | Soil | MEETTVVSGKLEESLRHEIESYIEGRLSGVKQEIAELQSRLNE |
| JGI1027J12803_1076691312 | 3300000955 | Soil | VVSGQLEESLRHEIESYIEGRLSGVRQEISELQSQLNES |
| JGI10216J12902_1252592501 | 3300000956 | Soil | VVTGQLEDSLRHEIESYIEGRLGSIKEEISELQKQLNESLTRLLDRQADVQL |
| Ga0062595_1002397773 | 3300004479 | Soil | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLL |
| Ga0062380_105566121 | 3300004779 | Wetland Sediment | VVSGQLEESLRHEVESYIEGRLSGVKQEIAELQSRLNEALSQL |
| Ga0065712_102572712 | 3300005290 | Miscanthus Rhizosphere | MEDPPVVNGQLEDSLRHEIETYLEGRLSAIKQEIATLQSQMNESLA |
| Ga0070677_102304741 | 3300005333 | Miscanthus Rhizosphere | VVSGQLEESLRKEIESFIEGRIGGIKQEIAALQSQLNESLSRMLD |
| Ga0070661_1016546111 | 3300005344 | Corn Rhizosphere | VVNGQLENSLRHEIESYIESRLGTIKQDITALQSLLNESLTGLFERQSDVPME |
| Ga0070692_113481761 | 3300005345 | Corn, Switchgrass And Miscanthus Rhizosphere | VVSGKLEESLRHEIESYIEGRLSGVKQEIAELQSRLNEALSQLLDRQSEV |
| Ga0070701_114171491 | 3300005438 | Corn, Switchgrass And Miscanthus Rhizosphere | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLD |
| Ga0070705_1006639271 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MEEHTVVSGQLEDSLRHELESYIEGRIGGIKQEIAVLQSQLNESLSR |
| Ga0070705_1007129151 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | VVRGQLEESLRHELENYVEGRISSIKQEITALQSQLNESLSRLMD |
| Ga0070694_1003707691 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | VVSEQLEDSLRHEIESYIEGRLGGIKQEIAALQSQLNESLSRLMDRQSDVQLEGGVAASI |
| Ga0070678_1004712321 | 3300005456 | Miscanthus Rhizosphere | VVSGQLEDSLRHEIESYIEGRLGGIKQEVAALQSQLNESLSRLLDRQGEVQLD |
| Ga0070697_1017808962 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | MNASKIPQTEEEPVVSAQLEESLRRDIESYIDGRLGGIKQEIAALQSQLNESLSQLLDRQAEVQLD |
| Ga0070695_1011725331 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDR |
| Ga0070665_1003401971 | 3300005548 | Switchgrass Rhizosphere | VVNGQLEDSLRHEIESYLEGRLSAIKQEITALQSQLNESLANLLERQGDV |
| Ga0070664_1012559672 | 3300005564 | Corn Rhizosphere | VVNGQLEDSLRHEIESYLEGRLGSLKQEIASLQSQLNDSLAGLLDRQGD |
| Ga0068863_1016537451 | 3300005841 | Switchgrass Rhizosphere | VVNGQLEDSLRHEIESYLESRLSGIKQEIASLQSRLNESLTGLLDRQSDVQMEGS |
| Ga0081455_107479131 | 3300005937 | Tabebuia Heterophylla Rhizosphere | VASGQLEDSLRHEIETHIDGRLSAIKQEILTLQNQLNESVTNLLDRQNAVQMEGSLA |
| Ga0066652_1011300561 | 3300006046 | Soil | VVSGQLEDSLRHEIESYMEGRLSAIRQEIASLQSQLNESL |
| Ga0070716_1014224941 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | LVSEQLEESLRHEIESYVERRLSEFKQEIAQLQNQLN |
| Ga0066659_105336852 | 3300006797 | Soil | VVSEQLEDSLRHEVESYIEGRLGGIKQEIAALQSQLNESLS |
| Ga0099791_101722391 | 3300007255 | Vadose Zone Soil | VVSEQLEDSLRHEVESYIEGRLGGIKQEIAALQSQLNESLSRLMDRQSDVQLEGGVA |
| Ga0099791_101811831 | 3300007255 | Vadose Zone Soil | VVSVQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDRQGEAQLDGGV |
| Ga0099828_116935572 | 3300009089 | Vadose Zone Soil | MEERPVVNGQLEDSLRHEIESYIEGRLGAIKQEIASLQSQLNESL |
| Ga0111539_133898431 | 3300009094 | Populus Rhizosphere | VVNGQLEDSLRHEIESYLEGRLGSLKQEIASLQSQLNDSLAGLLDRQGDVQMEGSLTSSI |
| Ga0075418_112458991 | 3300009100 | Populus Rhizosphere | MEETTVVSGKLEESLRHEIESYIEGRLGGVKQEIAELQ |
| Ga0099792_110521552 | 3300009143 | Vadose Zone Soil | MRRDIESYIEGRLSGIKQEIAALQSQLNESLSQLLDRQGEVQLDGAVGASI |
| Ga0105242_116168692 | 3300009176 | Miscanthus Rhizosphere | VVSGQLEESLRHEIESYIEGRLSGIKQEITALQSQLNESLSRLLDRQGEVQ |
| Ga0105242_121885171 | 3300009176 | Miscanthus Rhizosphere | VVSGQLEDSLRHEIESYIEGRVDGIKQEIAALQSQLNESLTRLMDRQGDA |
| Ga0105248_100039951 | 3300009177 | Switchgrass Rhizosphere | MEDPPVVNGQLEDSLRHEIETYLEGRLSAIKQEIATLQSQMNESLANLLDRQGE |
| Ga0105248_114643051 | 3300009177 | Switchgrass Rhizosphere | MEDPAVVNGQLEDSLRHEIETYLEGRLSAIKQEIATLQSQMNESLANLLDRQGE |
| Ga0126380_114623261 | 3300010043 | Tropical Forest Soil | VVSSQIEESLRHEIESFIEGRLSSIKQEITSLQSQLNQSLTSLLDRQKDAQIEGSL |
| Ga0126382_104154533 | 3300010047 | Tropical Forest Soil | VVSSQIEESLRHEIESFIEGRLSSIKQEITSLQSQLNQSLTSLLD |
| Ga0126382_114649221 | 3300010047 | Tropical Forest Soil | VVNGQLEDSLRHEIESHIEGRLGAIKQEITSLQNQLNESLS |
| Ga0134070_102307162 | 3300010301 | Grasslands Soil | VVSGQLEDSLRHEIESYMEGRLSAIRQEIASLQSQLNESLTRLLERQGDVQMD |
| Ga0134128_106880491 | 3300010373 | Terrestrial Soil | MEDPPVVNGQLEDSLRHEIETYLEGRLSAIKQEIATLQSQMNESLAN |
| Ga0134128_113018312 | 3300010373 | Terrestrial Soil | VVSGQLEESLRHEIESYIEGRLGGIKQEITALQSQLNESL |
| Ga0134128_130261531 | 3300010373 | Terrestrial Soil | MEEHTVVSGQLEDSLRHELESYIEGRIGGIKQEIAVLQSQLNESLSRMLD |
| Ga0134127_120634782 | 3300010399 | Terrestrial Soil | LEESLRKEIESFIEGRVGGIRQEIATLQSQLNESLSRMLDRQAEVGLEGSLA |
| Ga0134121_107272302 | 3300010401 | Terrestrial Soil | MEEHTVVSGQLEDSLRHELESYIEGRIGGIKQEIAALQSQLNESLSRMLDRQ |
| Ga0134123_101925591 | 3300010403 | Terrestrial Soil | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDRQSEVQLDGAVG |
| Ga0134123_106400182 | 3300010403 | Terrestrial Soil | VVSGHLEDSLRHDIESYIEGRLNGIKQEIAALQSQLNESFNRLMDRQAEVQLDGAVATS |
| Ga0137391_101499491 | 3300011270 | Vadose Zone Soil | MEERPVVNGQLEDSLRHEIESYIEGRLGAIKQEIASLQSQLNESLTRLLDRQGDMQIDGS |
| Ga0137393_107624392 | 3300011271 | Vadose Zone Soil | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDRQ |
| Ga0137388_102391001 | 3300012189 | Vadose Zone Soil | MEERPVVNGQLEDSLRHEIESYIEGRLGAIKQEIASLQSQLNESLTRLLERQGDVQMDGSMTAS |
| Ga0137364_104294223 | 3300012198 | Vadose Zone Soil | VVSGQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSRLLDRQSEVQLD |
| Ga0137364_111936012 | 3300012198 | Vadose Zone Soil | VVSEQLEDSLRHEVESYIEGRLGGIKQEIAALQSQLN |
| Ga0137365_107214702 | 3300012201 | Vadose Zone Soil | MEERPVVNGQLEDSLRHEIESYIEGRLGAIKQEIASLQSQLN |
| Ga0137376_108292101 | 3300012208 | Vadose Zone Soil | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDRQGEVQLD |
| Ga0137376_110198832 | 3300012208 | Vadose Zone Soil | VLTGQLEDSLRHEIESYIEGRLSSIKEEISELQNRLNESL |
| Ga0137378_106101073 | 3300012210 | Vadose Zone Soil | MEERPVVNGQLEDSLRHEIESYIEGRLGAIKQEIASLQSQLNESLTRLL |
| Ga0137370_108550212 | 3300012285 | Vadose Zone Soil | VISGQLEDSLRHDIESYIEGRLSGIKQEIAALQSQLN* |
| Ga0137373_103088311 | 3300012532 | Vadose Zone Soil | VVSGQLEESLRHDIASYIEGRITGITQEIAALQSQLNESL |
| Ga0137358_105357441 | 3300012582 | Vadose Zone Soil | MEERPVANGQLEDSLRHEIESYLEGRLGAIKQEIASLQ |
| Ga0137397_109896142 | 3300012685 | Vadose Zone Soil | VVSAQLEDSLRRDIESYIEGRLGGIRQEIAALQSQLNESLSQLLDRQGEVQLDGGV |
| Ga0157282_103371721 | 3300012904 | Soil | VVSGKLEESLRHEIESYIEGRLSGVKQEIAELQSRLNEALS |
| Ga0137396_100118651 | 3300012918 | Vadose Zone Soil | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDRQGEAQLDGGVI |
| Ga0137396_106753531 | 3300012918 | Vadose Zone Soil | VVSGQLEDSLRHDIESYIEGRLGGIKQEIAALQSQLNESLSRLLDRQADVQLE |
| Ga0137410_104883433 | 3300012944 | Vadose Zone Soil | VVSGQLEESLRRDIESYIEGRLSGIKQEIAALQSQLNESL |
| Ga0164298_105061462 | 3300012955 | Soil | VVSGQLEDSLRHELESYIEGRIGGIKQEIAALQSQLNE |
| Ga0157378_101258371 | 3300013297 | Miscanthus Rhizosphere | VVSGQLEDSLRHEIESYIEGRIGGIKQEIAALQSQLNESLTRLMDRQSEVQLD |
| Ga0157378_110940551 | 3300013297 | Miscanthus Rhizosphere | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDRQGEVQ |
| Ga0157378_124987061 | 3300013297 | Miscanthus Rhizosphere | LEESLRKEIESFIEARIGGIRQEIATLQSQLNESLSRMLDRQAEVGLEGSLATAI |
| Ga0120158_102919331 | 3300013772 | Permafrost | VVSGQLEDSLRHDIESYIEGRLGGIKQEIAALQSQLNESLSRLLDRQT* |
| Ga0163163_100168311 | 3300014325 | Switchgrass Rhizosphere | MEDPAVVNGQLEDSLRHEIETYLEGRLSAIKQEIATLQSQMNESL |
| Ga0163163_102972341 | 3300014325 | Switchgrass Rhizosphere | MEDPPVVNGQLEDSLRHEIETYLEGRLSAIKQEIATLQSQMNESL |
| Ga0180074_11362322 | 3300014877 | Soil | VVSGQLEESLRHEIESYIEGRLSGVRQEISELQSQLNESLSRLLDRQGEVQLDGSVAA |
| Ga0167633_1013577 | 3300015069 | Glacier Forefield Soil | VVSGQLEDSLRHEIESYIEGRLGGIKQEIAALQSQLNESLSRLLDRQ |
| Ga0137409_116168372 | 3300015245 | Vadose Zone Soil | VVSGQLEDSLRRDIESYIEGRLSGIKQEIAALQSQLNESL |
| Ga0132258_104252781 | 3300015371 | Arabidopsis Rhizosphere | VVTGQLEDSLRQEIESHVDGRVSSIKAEIADLQKQLNESFTRLLERQADVQMDGSLIAAV |
| Ga0132258_136047422 | 3300015371 | Arabidopsis Rhizosphere | VVNGQLEDSLRHEIESYLEGRLSAIKQEISTLQSQMNESLASLLERQAEVQTEGSLTTAIAE |
| Ga0132257_1022055352 | 3300015373 | Arabidopsis Rhizosphere | MEENTVVSGQLEDSLRHELESYIEGRIGGIKQELAALQSQLNESLSRMLDRQEEVQL |
| Ga0132255_1022135411 | 3300015374 | Arabidopsis Rhizosphere | VVSGQLEDSLRHEVETYIDGRLSAIKQEILTLQSQLNESVANLLNRQN |
| Ga0184619_103402002 | 3300018061 | Groundwater Sediment | VVSGQLEDSLRHEIESYIEGRLGGIKQEIAALQSQLNESLSRLMDR |
| Ga0184617_11810551 | 3300018066 | Groundwater Sediment | VVSAQLEDSLRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLLDRQAEVQLDG |
| Ga0184609_102853571 | 3300018076 | Groundwater Sediment | VVSAQLEESLRREIETYIEGRLSGVKQEMGELQSRINESL |
| Ga0190272_111779861 | 3300018429 | Soil | VVSGQLEESLRNEIESYIEGRLGGVKQEIAALQSQ |
| Ga0190270_118222762 | 3300018469 | Soil | VVSGQLEDSLRHEIESYIEGRIGGIKQEIAALQSQLNESLTRLMD |
| Ga0187892_100823311 | 3300019458 | Bio-Ooze | VVTGHLEESLRHELESYIEGRLSGLKLEIAQLQSQLNESI |
| Ga0190267_105818002 | 3300019767 | Soil | VVSGQLEDSLRHEIESYIEGRLSGVKHEIAALQSQLNEALSQLLDRQSEV |
| Ga0193739_10357571 | 3300020003 | Soil | VVSGQLEESLRHEIESYIEGRLGGIKQEIAALQSQLNESLSRLLDRQTEV |
| Ga0224452_11685881 | 3300022534 | Groundwater Sediment | VVSGQLEESLRHEIESYIEGRLSGVRQEISELQSQLNESLTRLLDRQGEVQLDG |
| Ga0209341_104575473 | 3300025325 | Soil | VVTGQLEESLRHEIESYIEGRLSSIKQEISELQSQLNESLTRLLDRQGDVQ |
| Ga0207688_106175061 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | VVNGQLEDSLRHEIESYLEGRLGSLKQEIASLQSQLNDSLAGL |
| Ga0207681_108371262 | 3300025923 | Switchgrass Rhizosphere | VVSEQLEDSLRHEIESYIEGRLGGVKQELAALQSQLNESLS |
| Ga0207709_105124721 | 3300025935 | Miscanthus Rhizosphere | VVSGQLEDSLRHELESYIDGRIGGIKQEIAALQSQLNESFSRMLDR |
| Ga0207691_103798642 | 3300025940 | Miscanthus Rhizosphere | VVNGQLEDSLRHEIETYLEGRLSAIKQEIATLQSQMNESLANLLDRQGEMQME |
| Ga0207691_112224991 | 3300025940 | Miscanthus Rhizosphere | VVSGKLEESLRHEIESYIEGRLSGVKQEIAELQSRLNEALSQLLDRQSEVQL |
| Ga0207691_116482682 | 3300025940 | Miscanthus Rhizosphere | VVSGQLEESLRHEIESYIEGRLSGIKQEITALQSQLNESLSRLLDRQGEVQLDA |
| Ga0207689_108288042 | 3300025942 | Miscanthus Rhizosphere | VVNGQLEDSLRHEIESYLEGRLSSIKQEINNLQSQMNESLANLLERQADV |
| Ga0207679_105318421 | 3300025945 | Corn Rhizosphere | VVNGQLEDSLRHEIESYLEGRLGSLKQEIASLQSQLNDSLAGLLDRQGDVQMEGSLTSSIAE |
| Ga0207651_121289641 | 3300025960 | Switchgrass Rhizosphere | VVSAQLEDSMRRDIESYIEGRLGGIKQEIAALQSQLNESLSQLMDRQSEV |
| Ga0207675_1003379823 | 3300026118 | Switchgrass Rhizosphere | VVNGQLEDSLRHEIESYLEGRLGALKQEITSLQSQFNESLASLLERQGDL |
| Ga0209981_10707441 | 3300027378 | Arabidopsis Thaliana Rhizosphere | VVSGKLEESLRHEIESYIEGRLGGVKQEIAELQSRLNEALTQLLDRQGEVQLEGS |
| Ga0268265_120402281 | 3300028380 | Switchgrass Rhizosphere | VVSGQLEESLRKEIESFIEGRIGGIRQEIATLQSQLNESLSRMLDRQAEVGLEGSLATA |
| Ga0137415_113106141 | 3300028536 | Vadose Zone Soil | VVSGQLEDSLRHDIESYIEGRLSGIKQEVAALQSQLNESLSRLLDRQAEVQLDGGL |
| Ga0307501_102656661 | 3300031152 | Soil | VVNGQLEDSLRHEIESYIEGRLGAIKQEIASLQSQLNESLTRLLDRQSDVQ |
| Ga0310890_112499661 | 3300032075 | Soil | VVSGQLEESLRHEIESYLEGRLSGVRQEISELQSQL |
| Ga0307471_1026777772 | 3300032180 | Hardwood Forest Soil | VVSSQIEESLRHEIESFIEGRLSSLKQEISSLQSQ |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |