Metagenome / Metatranscriptome Family F099714

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099714
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	73 residues
Representative Sequence	GYRIDTLLHLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR
Number of Associated Samples	83
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	6.80 %
% of genes near scaffold ends (potentially truncated)	91.26 %
% of genes from short scaffolds (< 2000 bps)	96.12 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.728 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.476 % of family members)
Environment Ontology (ENVO)	Unclassified (33.981 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.223 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.00% β-sheet: 0.00% Coil/Unstructured: 42.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF07719	TPR_2	2.91
PF03976	PPK2	1.94
PF00486	Trans_reg_C	1.94
PF13432	TPR_16	1.94
PF00072	Response_reg	0.97
PF04964	Flp_Fap	0.97
PF13505	OMP_b-brl	0.97
PF08666	SAF	0.97
PF00232	Glyco_hydro_1	0.97
PF13751	DDE_Tnp_1_6	0.97
PF01478	Peptidase_A24	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	1.94
COG2723	Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase	Carbohydrate transport and metabolism [G]	0.97
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.73 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	73.79 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	71.84 %
Unclassified	root	N/A	24.27 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	58.25 %
Unclassified	root	N/A	24.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.68 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.25 %
Unclassified	root	N/A	24.27 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.88 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.97 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.25 %
Unclassified	root	N/A	24.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.25 %
Unclassified	root	N/A	24.27 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	58.25 %
Unclassified	root	N/A	24.27 %
Bradyrhizobium sp. 139	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 139	1.94 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10908920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300005332\|Ga0066388_102986713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 139	864	Open in IMG/M
3300005332\|Ga0066388_106765978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	577	Open in IMG/M
3300005332\|Ga0066388_107144345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300005544\|Ga0070686_101253503	Not Available	618	Open in IMG/M
3300005713\|Ga0066905_100642840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	903	Open in IMG/M
3300005713\|Ga0066905_101003155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300005764\|Ga0066903_100122387	All Organisms → cellular organisms → Bacteria → Proteobacteria	3622	Open in IMG/M
3300005764\|Ga0066903_100690564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1796	Open in IMG/M
3300005764\|Ga0066903_101752263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1185	Open in IMG/M
3300005764\|Ga0066903_102144090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1077	Open in IMG/M
3300005764\|Ga0066903_102847464	Not Available	938	Open in IMG/M
3300005764\|Ga0066903_104431129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	750	Open in IMG/M
3300005764\|Ga0066903_105000470	Not Available	703	Open in IMG/M
3300005764\|Ga0066903_105644973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	658	Open in IMG/M
3300006028\|Ga0070717_11086930	Not Available	728	Open in IMG/M
3300006173\|Ga0070716_101493156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300006175\|Ga0070712_101328528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	627	Open in IMG/M
3300006800\|Ga0066660_10915866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M
3300009137\|Ga0066709_102364614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300009147\|Ga0114129_12675196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300010043\|Ga0126380_12002786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300010047\|Ga0126382_11654590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	596	Open in IMG/M
3300010358\|Ga0126370_11990931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300010358\|Ga0126370_12388152	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300010360\|Ga0126372_10784607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	942	Open in IMG/M
3300010366\|Ga0126379_10493175	Not Available	1295	Open in IMG/M
3300010366\|Ga0126379_10817198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1032	Open in IMG/M
3300010366\|Ga0126379_13179487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300010366\|Ga0126379_13662528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300010371\|Ga0134125_11675259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300010376\|Ga0126381_102769717	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300010398\|Ga0126383_10831661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1007	Open in IMG/M
3300010398\|Ga0126383_12459710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300012199\|Ga0137383_11072038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	584	Open in IMG/M
3300012202\|Ga0137363_11264216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300012209\|Ga0137379_11680448	Not Available	532	Open in IMG/M
3300012211\|Ga0137377_11742346	Not Available	544	Open in IMG/M
3300012356\|Ga0137371_10854454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300012582\|Ga0137358_10135302	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300012582\|Ga0137358_10270784	Not Available	1154	Open in IMG/M
3300012923\|Ga0137359_11008970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300012948\|Ga0126375_11197212	Not Available	632	Open in IMG/M
3300012951\|Ga0164300_10049757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1651	Open in IMG/M
3300012960\|Ga0164301_10853425	Not Available	702	Open in IMG/M
3300012984\|Ga0164309_10887833	Not Available	725	Open in IMG/M
3300012985\|Ga0164308_12202985	Not Available	513	Open in IMG/M
3300012986\|Ga0164304_11587454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300012989\|Ga0164305_10896296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	745	Open in IMG/M
3300013306\|Ga0163162_12617195	Not Available	580	Open in IMG/M
3300016270\|Ga0182036_11893094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300016294\|Ga0182041_11421860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300016319\|Ga0182033_11328839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300016387\|Ga0182040_10951993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300016404\|Ga0182037_11986662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300016422\|Ga0182039_10119514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1984	Open in IMG/M
3300016445\|Ga0182038_10891721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	783	Open in IMG/M
3300017997\|Ga0184610_1281506	Not Available	549	Open in IMG/M
3300018073\|Ga0184624_10430146	Not Available	582	Open in IMG/M
3300018081\|Ga0184625_10547205	Not Available	576	Open in IMG/M
3300019875\|Ga0193701_1016764	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300021560\|Ga0126371_13049048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300025898\|Ga0207692_10765999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	630	Open in IMG/M
3300025915\|Ga0207693_10927006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	667	Open in IMG/M
3300026551\|Ga0209648_10547105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300027909\|Ga0209382_10437801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1450	Open in IMG/M
3300028710\|Ga0307322_10217888	Not Available	524	Open in IMG/M
3300028771\|Ga0307320_10251364	Not Available	697	Open in IMG/M
3300028796\|Ga0307287_10345513	Not Available	561	Open in IMG/M
3300028814\|Ga0307302_10579942	Not Available	557	Open in IMG/M
3300028880\|Ga0307300_10283644	Not Available	557	Open in IMG/M
3300031170\|Ga0307498_10028578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1351	Open in IMG/M
3300031226\|Ga0307497_10511728	Not Available	594	Open in IMG/M
3300031421\|Ga0308194_10048657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1076	Open in IMG/M
3300031573\|Ga0310915_11031730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300031719\|Ga0306917_10872683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300031744\|Ga0306918_10449241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 139	1007	Open in IMG/M
3300031768\|Ga0318509_10075257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1779	Open in IMG/M
3300031770\|Ga0318521_10064746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1929	Open in IMG/M
3300031770\|Ga0318521_10160756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1280	Open in IMG/M
3300031781\|Ga0318547_10312028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	956	Open in IMG/M
3300031819\|Ga0318568_10074048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2006	Open in IMG/M
3300031833\|Ga0310917_10010224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5102	Open in IMG/M
3300031879\|Ga0306919_10160851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1645	Open in IMG/M
3300031879\|Ga0306919_10777745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300031890\|Ga0306925_10047397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4471	Open in IMG/M
3300031890\|Ga0306925_11637786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300031894\|Ga0318522_10386417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	530	Open in IMG/M
3300031897\|Ga0318520_11056385	Not Available	514	Open in IMG/M
3300031912\|Ga0306921_12014847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300031942\|Ga0310916_10976867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300031945\|Ga0310913_10678960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300031954\|Ga0306926_11157604	Not Available	911	Open in IMG/M
3300032025\|Ga0318507_10271694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	736	Open in IMG/M
3300032041\|Ga0318549_10319852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	699	Open in IMG/M
3300032042\|Ga0318545_10255695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300032051\|Ga0318532_10160965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300032065\|Ga0318513_10507690	Not Available	590	Open in IMG/M
3300032076\|Ga0306924_10894688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	982	Open in IMG/M
3300032205\|Ga0307472_100857588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	836	Open in IMG/M
3300032261\|Ga0306920_100539294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1729	Open in IMG/M
3300032261\|Ga0306920_100811594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1373	Open in IMG/M
3300033289\|Ga0310914_11111564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.09%
Host-Associated	Host-Associated	2.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.17%
Aquatic	Environmental → Aquatic	2.91%
Plants	Host-Associated → Plants	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.17%
Sediment	Environmental → Aquatic → Sediment	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.76%
Loam	Environmental → Terrestrial → Soil → Loam	19.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_109089201	3300004633	Tropical Forest Soil	QILNSLRGDSRPQLSYRIDTLLDLLARVPGTCAALARRIPGAGEVADEECSFRENLRKYIETTAPAPDEEEESRRRGLLMLNQLGGG*
Ga0066388_1029867132	3300005332	Tropical Forest Soil	RPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNEPSGR*
Ga0066388_1067659781	3300005332	Tropical Forest Soil	ILISVRGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQPSGR*
Ga0066388_1071443452	3300005332	Tropical Forest Soil	PQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEEESKRRGLFMLKQVGGR*
Ga0070686_1012535032	3300005544	Switchgrass Rhizosphere	LIHRVDTLVDLLARVPGACGALARLVPDADKAADQECSFSENLRKFIETTRSSAAEQEEDSKRRGLLMLN*
Ga0066905_1006428401	3300005713	Tropical Forest Soil	LTSLRGDSRPRLGYRIDTLLDLLARVPGACGALARLIPREGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNEPSGR*
Ga0066905_1010031551	3300005713	Tropical Forest Soil	RVPGACSALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQPSGR
Ga0066903_1001223875	3300005764	Tropical Forest Soil	LLDLLARVPGACGALARLISGEGGAADRECSFGQNLRKHIETTAPAREEEELKRRGLLMLNHPSGR*
Ga0066903_1006905641	3300005764	Tropical Forest Soil	ILTSLRGDSRPQLGYRIDTLLDLLARVPGACGALAGLIPGEGEAADRECSFRQNLRKHIETTAPAREEEESKRRGLLMLNEPSGR*
Ga0066903_1017522631	3300005764	Tropical Forest Soil	LISLRGDSRPQLGYRIDTLLDLLARVPGACGALARLMPGDGQAADPGCSSSQNLRKQIETTAPTHEEEAKRRGLLMFDQLSGRQ*
Ga0066903_1021440902	3300005764	Tropical Forest Soil	LFATEILSSLRGDLRPQLGYRIDNLLDLLARVPGACGALARLVPGAGEAADQECSFSENLRKHIETTSPPGEEEEEAKYRALLMLNQLSGR*
Ga0066903_1028474642	3300005764	Tropical Forest Soil	VACVPGACGALARLIAGEGEAADRECSFGQNLRKHIETTAPAREEEESKRRGLLMLNEPSER*
Ga0066903_1044311291	3300005764	Tropical Forest Soil	SLRGDSRPQLSYRIDTLLDLLARVPGTCAALARRIPGAVEVADQECSLGENLRKYIETTAPAPNEEEESRRRGLLMLNQLGGG*
Ga0066903_1050004702	3300005764	Tropical Forest Soil	GACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREDEESKRRGLLMLNEPSGR*
Ga0066903_1056449733	3300005764	Tropical Forest Soil	RGDSRPRLGYRIDTLLDLLARVPGACGALARLIPGEGEAGDRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR*
Ga0070717_110869303	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LDLLARVPGACDALARLIPGEGSAADQECSFSQNLRKHIETTASAREEQESKRRGLPMLNHPSGR*
Ga0070716_1014931561	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VRGDSRPQLIHRVDTLVDLLARVPGACGALARLVPGAGNAADQECSLGENLRKYIETTRPSAGEEEESKRRGLLMLNQLGER*
Ga0070712_1013285282	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LARVPGACGALARLVPGAGKAADQECWFSENLRKFIETTRPSAADEEESKRRGLLMLNQLGDR*
Ga0066660_109158662	3300006800	Soil	DSLRGDSRPQLIPRVDTLLDLLARVPGACGALAHLVPGAGKAADQECLFSENLRKFIETTLPSAADEEESKRRGLLMLNQLGDR*
Ga0066709_1023646141	3300009137	Grasslands Soil	LDLFAAQILSLLGGDSRPQLGYRIDTLLDLLARVPGACGALARLVPGAGEAAGRECSFGESLRKHIETTSPASEEEHSKRRGLSMLRQVSGR*
Ga0114129_126751961	3300009147	Populus Rhizosphere	SRPQLGHRIDTLLDLLARVPAACGALARLISTADQVVDRECSFAAQLQKYIETATPAPDEEEESKRRGLLLLSQLGEG*
Ga0126380_120027861	3300010043	Tropical Forest Soil	TSLRGDSRPRLGYRIDTLLDLLARVPGACGALARLIPREGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNEPSGR*
Ga0126382_116545901	3300010047	Tropical Forest Soil	FASQILDFLRGDSRPQLIHRVDTLLDLLARVPSACGALARLLPGADKTADQECLFSENLRKYIETTRPSAAQEEESKRRGLLMLNEVGER*
Ga0126370_119909311	3300010358	Tropical Forest Soil	FATQILISLRGDSRPQLAYRIDTLLDLLARVPGACGALARLIPGEGDAADQKCSFSQNLREHVETTAPAREEEESKRRGLLMLKQLGGR*
Ga0126370_123881521	3300010358	Tropical Forest Soil	GACGALARLISGEGGAADRECSFGQNLRKHIETTAPAREEEELKRRGLLMLNHPSGR*
Ga0126372_107846072	3300010360	Tropical Forest Soil	VPGACGALARLIPGEGEAANRECSFSQNLRKHIETTAPTREEEESKRRGLLMLKQLGGR*
Ga0126379_104931751	3300010366	Tropical Forest Soil	ALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNEPSGR*
Ga0126379_108171982	3300010366	Tropical Forest Soil	VPGACCALARLVPGAGEAADRECSFSENLRKHIETTAPAGQGEESKRRGSLMLN*
Ga0126379_131794871	3300010366	Tropical Forest Soil	YRIDTLLDLLARVPGACGALARLIPGEGDAADQKCSFSQNLREHVETTAPAREEEESKRRGLLMLKQLGGR*
Ga0126379_136625281	3300010366	Tropical Forest Soil	QLIHRVDTLLDLLARVPGACGALARRLLPGPGKAADQECFFSENLRKYIETTRSAVAAEEEESKSRGLLMLDQVGER*
Ga0134125_116752591	3300010371	Terrestrial Soil	SYRIDTLLDLLARVPGTCAALGRQLPGVGDVADEECSFRENLRKYIETTAPAPKEEESRRRGLLMLNQLSGG*
Ga0126381_1027697171	3300010376	Tropical Forest Soil	VLGSLRGDSRPQLGYRMDNLLDLLARVPGACGALARLIPGEGDAADQKCSFSQNLREHVETTAPAREEEESKRRGLLMLKQLGGR*
Ga0126383_108316612	3300010398	Tropical Forest Soil	LAGQIINSLRGDSRPHLDYRIDTLVDLLARVRGACGALAHLVPEAGDGSDQECSSSFSGKLRKHIETTTAAGEEEESKRRGLVMLSQLDGR*
Ga0126383_124597101	3300010398	Tropical Forest Soil	PQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEEGQSAAVCSC*
Ga0137383_110720382	3300012199	Vadose Zone Soil	DSRPQLIYRVDTLLDLLARVPGARGALARLLPGAGKGADQECLFSENLRKFIETTRPAAAEEEESKRRGLLMLNQLGGR*
Ga0137363_112642162	3300012202	Vadose Zone Soil	LLARVPGACGALARLVPGTGEAAGRECSFSENLRKHIETTAPAGEEEESKRRGLLMLNQLSGR*
Ga0137379_116804481	3300012209	Vadose Zone Soil	LLDLLERVPGACGALARLIQGEGEAADRECSFGQNLRKHIEITAPAREEEESKRRGLLMLNQPSGR*
Ga0137377_117423462	3300012211	Vadose Zone Soil	GRVPDACGALARRLSPGPDKAADQECLFSENLGKYIETTRSAAAEEEEESKRRGLLMLNQVGER*
Ga0137371_108544541	3300012356	Vadose Zone Soil	SSLSGDSRPQLGYRIDTLLDLLARVPGACGALARLVPAASEAADRECSFSQNLRKHIETTAPAREEEEESKRRGLFMMKQVGGR*
Ga0137358_101353023	3300012582	Vadose Zone Soil	LDLLARVPGACGALARQVPGPGEAAGRECSFSESLRKHIETTSPASEEEDSKRRGLSMLKQVGGR*
Ga0137358_102707841	3300012582	Vadose Zone Soil	FLARVSCACGALARLVPGAGEGAGRVCSFSESLRKHIETTAPAPEEDESKRRGL*
Ga0137359_110089701	3300012923	Vadose Zone Soil	RPQLGHRIDMLLDLLARVPGACGALARIVPGPGDPSDQECSSSFSGKLRKHIEATMRAGEEEELKRRGLVMLNQLDGR*
Ga0126375_111972121	3300012948	Tropical Forest Soil	LARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNEPSGR*
Ga0164300_100497573	3300012951	Soil	ACGALARLVPGAGNAADQECSLGENLRKYIETTRPSAGEEEESKRRGLLMLNQLGER*
Ga0164301_108534252	3300012960	Soil	HRVDTLVDLLARVPGACGALARLVPGPDKADDQECSFSEHLRKFIETTRSSAAEQEEDSKRRGLLMLNQLSGG*
Ga0164309_108878331	3300012984	Soil	GDSRPHLNSRVDTLLDLLARVPGACGALARLVPGASKVADQECLLGETLRKYIETTQPAPAEEESKGRALLMLNQLGDR*
Ga0164308_122029851	3300012985	Soil	LARLVPGAGKDADQECSFGENLRKYIETTRPSAGEEEESKRRGLLMLNQLGER*
Ga0164304_115874541	3300012986	Soil	LIHRLETLLDLLVRVPGACGALARLVPGAGKVADQECSLGENLRKYIETTRPSAAEEEESKRRGLLMLNQLGER*
Ga0164305_108962963	3300012989	Soil	RVDTLVDLLARVPGACGALARLVPGADKAADQECSFSEHLRKFIETTRSSAAEQEEDSKRRGLLMLNQLSGG*
Ga0163162_126171951	3300013306	Switchgrass Rhizosphere	PQLIHRVDTLVDLLARVPGACDALARLVPGAGKAADQECSFSENLRKFIETTRSSAAEQEEDSKRRGLLMLSQLSGG*
Ga0182036_118930941	3300016270	Soil	ARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSG
Ga0182041_114218601	3300016294	Soil	SRPQLSYRIDTLLDLLARVPGTCAALARRIPGAGEVADQECSLGENLRKYIETTAPAPNEEEESRRRGLLMLNQLGGG
Ga0182033_113288391	3300016319	Soil	LLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR
Ga0182040_109519932	3300016387	Soil	RIDTLLDLLARVPGACGALARLIPGEGDAADQKRSFSQNLRQHVETTAPAREEEESKRRGLLMLNQPSGR
Ga0182037_119866622	3300016404	Soil	SLRGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQPSGR
Ga0182039_101195141	3300016422	Soil	GGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0182038_108917211	3300016445	Soil	VPGACGAVARLIPGEREAADRECAFGQNLRKHIETTAPAREEEESKRRGLLMLSHPSGRWRGVVRGWSAAS
Ga0184610_12815061	3300017997	Groundwater Sediment	LDVFATEILELVRGDSRPQLIHRVDTLVDLLARVPGACGALARLVAGAGKAADQECSFSENLRKFIETTRSSAAEQEEDSKRRGLLMLNQVGER
Ga0184624_104301462	3300018073	Groundwater Sediment	ARVPGACGALARLVPAADKAADQECSFSENLRKFIETTRSSAAEQEEESKRRGMMMLN
Ga0184625_105472052	3300018081	Groundwater Sediment	DTLVDLLARVPGACGALARLVAGAGKAADQECSFSENLRKFIEKTRSSAAEQEEDSKRRGLLMLSQLSGG
Ga0193701_10167642	3300019875	Soil	VPGACGGLARLVPGAGKAADQECSFSEDLRKFIETTRSSAAEEEESKRRGLLMLNQVGER
Ga0126371_130490481	3300021560	Tropical Forest Soil	RIDTLLDLLARVPGACGALARLIPGEGDAADQKCSFSQNLREHVETTAPAREEEESKRRGLLMLKQLGGR
Ga0207692_107659992	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ARLVPGAGKAADQECLFSENLRKFIETTRPSAADEEESKRRGLLMLNQLGDR
Ga0207693_109270061	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LARVPGACGALARLVPGAGKAADQECWFSENLRKFIETTRPSAADEEESKRRGLLMLNQLGDR
Ga0209648_105471051	3300026551	Grasslands Soil	QLDLFAGQIINSLRGDSRPQLGHRIDMLLDLLARVSEACGALARLVPGTGDPSDQECSSSFSEKLRKHIETTMRASEEEELKRRGLVMLNQLDGR
Ga0209382_104378011	3300027909	Populus Rhizosphere	LLARVSGACGALARRLGEGKAADQECLFSENLRKYIETTRPAAGEEEESKRRGLLMLNELGER
Ga0307322_102178881	3300028710	Soil	VPGACGAIARLVAGAGKAADQECSFSENLRKFIETTRSSAAEEEEESKHRGLLMLNQVGE
Ga0307320_102513641	3300028771	Soil	VPGACGALARLVPGAGKVADQECFLGENLRKFIETTRPSAAEEEESKHRGLLMLNQVGER
Ga0307287_103455131	3300028796	Soil	PQLIHRVDTLVDLLARVPGACGAIARLVAGAGKAADQECSFSENLRKFIETTRSSAAEQEEDSKRRGLLMLSQLSGG
Ga0307302_105799421	3300028814	Soil	RVETLLDLLARVPGACGALARLVPGAGKVADQECFLGENLRKFIETTRPSAAEEEESKHRGLLMLNQVGER
Ga0307300_102836442	3300028880	Soil	PQLIHRVDTLVDLLARVPGACGALARLVAGAGKAADQECSFSENLRKFIETTRSSAAEEEESKRRGLLMLNQVGDR
Ga0307498_100285782	3300031170	Soil	LRGDSRPQLIHRVDTLVDLLARVPGACGALARLVAGAGKAADQECSFSEDLRKFIETTRSSAAEEEESKRRGLLMLNQLGER
Ga0307497_105117281	3300031226	Soil	VPGACGALARLVPGADKAADQECSFSEHLRKFIETTRPSAAEQEEESKRRGVLMLNQLGG
Ga0308194_100486571	3300031421	Soil	LARLVPGAGKAADQECLFSEDLRKFIETARPSAAEEEESKHRGLLMLNQVGER
Ga0310915_110317302	3300031573	Soil	VDLFAIQILISLRGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGDAADQKRSFSQNLRQHVETTAPAREEEESKRRGLLMLNQPSGR
Ga0306917_108726831	3300031719	Soil	GDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0306918_104492412	3300031744	Soil	PQLGYRIDTLLHLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR
Ga0318509_100752573	3300031768	Soil	LSSLRGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAANRECSFSQNLRKHIETTAPTREEEESKRRGLLMLNQLSGH
Ga0318521_100647463	3300031770	Soil	ALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0318521_101607561	3300031770	Soil	GYRIDTLLDLLARVPGACGAVARLIPGEREAADRECAFGQNLRKHIETTAPAREEEESKRRGLLMLSHPSGRWRGVVRGWSAAS
Ga0318547_103120281	3300031781	Soil	LLHLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0318568_100740481	3300031819	Soil	ILLGGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0310917_100102244	3300031833	Soil	VDLFAIQILILLGGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0306919_101608512	3300031879	Soil	SSLRGDSRPQLGYRIDTLLDLLARVPGACDAVARLIPGEGEAADRECAFSQNLRKHIETTAPAREEEEESNADEPAPMQWAALVS
Ga0306919_107777452	3300031879	Soil	LARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR
Ga0306925_100473974	3300031890	Soil	VDLFATQILILLGGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0306925_116377862	3300031890	Soil	DDNLLDLLARVPGACGALARLGTGHGEAAGRECSFSENLRKHIETTATAGEAEESKRRGLPMLNQRTLAQPPSGRSAASE
Ga0318522_103864171	3300031894	Soil	PGACGAVARLIPGEREAADRECAFGQNLRKHIETTAPAREEEESKRRGLLMLSHPSGRWRGVVRGWSAAS
Ga0318520_110563852	3300031897	Soil	LARLIPGEGDAADQKRSFSQNLRQHVETTAPAREEEESKRRGLLMLNQPSGR
Ga0306921_120148471	3300031912	Soil	PGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR
Ga0310916_109768672	3300031942	Soil	QGQVDLFATQILSSLRGDSRPQLGYRIDTLLDLLARVPGACDAVARLIPGEGEAADRECAFSQNLRKHIETTAPAREEEEESNADEPAPMQWAALVS
Ga0310913_106789602	3300031945	Soil	GACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR
Ga0306926_111576043	3300031954	Soil	LLARVPGACGALARLGTGHGEAAGRECSFSENLRKHIETTATAGEAEESK
Ga0318507_102716941	3300032025	Soil	QLGYRIDTLLDLLARVPGACGAVARLIPGEREAADRECAFGQNLRKHIETTAPAREEEESKRRGLLMLSHPSGRWRGVVRGWSAAS
Ga0318549_103198521	3300032041	Soil	RVPGACGAVARLIPGEREAADRECAFGQNLRKHIETTAPAREEEESKRRGLLMLSHPSGRWRGVVRGWSAAS
Ga0318545_102556951	3300032042	Soil	VDLFAIQILISLRGDSRPQLGYRIDTLLDLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0318532_101609652	3300032051	Soil	TQILSSLRGDSCPQLGYRIDTLLDLLARVPGACGAVARLIPGEREAADRECAFGQNLRKHIETTAPAREEEESKRRGLLMLSHPSGRWRGVVRGWSAAS
Ga0318513_105076902	3300032065	Soil	PGACGALARLIPGEGEAADRECSFSQNLRKHIETPPPAREEEESKRRGLLMLNEPSGR
Ga0306924_108946883	3300032076	Soil	GYRIDTLLHLLARVPGACGALARLIPGEGEAADRECSFSQNLRKHIETTAPAREEEESKRRGLLMLNQTSGR
Ga0307472_1008575881	3300032205	Hardwood Forest Soil	LGYRIDNLLDLLARVPGACGALGRVVPGTGEAAGRECSFSENLRKHIETTAQAGEAEESKRRGLLMLNQLSGR
Ga0306920_1005392941	3300032261	Soil	YRIDTLLDLLARVPGACGALARLIPGEGDAADQKRSFSQNLRQHVETTAPAREEEESKRRGLLMLNQPSGR
Ga0306920_1008115943	3300032261	Soil	LLARVPGACGALARLGTGHGEAAGRECSFSENLRKHIETTATAGEAEESKRRGLPMLNQRTLAQPPSG
Ga0310914_111115641	3300033289	Soil	GYRIDTLLDLLARVPGACGALARLIPGEGDAADQKRSFSQNLRQHVETTAPAREEEESKRRGLLMLNQPSGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099714

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences