Metagenome Family F099702

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099702
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	59 residues
Representative Sequence	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Number of Associated Samples	90
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.93 %
% of genes near scaffold ends (potentially truncated)	33.01 %
% of genes from short scaffolds (< 2000 bps)	85.44 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.340 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (11.650 % of family members)
Environment Ontology (ENVO)	Unclassified (29.126 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.515 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.77% β-sheet: 0.00% Coil/Unstructured: 35.23%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
f.63.1.1: Claudin	d3jbre_	3jbr	0.85601
f.63.1.1: Claudin	d3x29a_	3x29	0.85049
a.7.14.0: automated matches	d5fvka_	5fvk	0.842
a.25.1.2: Ribonucleotide reductase-like	d3n20b_	3n20	0.84107
a.25.1.0: automated matches	d5uwza_	5uwz	0.84068

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF12850	Metallophos_2	2.91
PF00154	RecA	1.94
PF02518	HATPase_c	1.94
PF13467	RHH_4	0.97
PF00072	Response_reg	0.97
PF04392	ABC_sub_bind	0.97
PF12071	DUF3551	0.97
PF07969	Amidohydro_3	0.97
PF13343	SBP_bac_6	0.97
PF13185	GAF_2	0.97
PF02515	CoA_transf_3	0.97
PF01546	Peptidase_M20	0.97
PF03734	YkuD	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	1.94
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.97
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.97
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.97
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
All Organisms	root	All Organisms	44.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
cellular organisms	root	All Organisms → cellular organisms	44.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.95 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.21 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.97 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.36 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.97 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.97 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.53 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	0.97 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.97 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	11.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.97 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.97 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.97 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.97 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.97 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	0.97 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.97 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.34 %
Rhodopseudomonas rhenobacensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	11.65 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.88 %
Myxococcus sp. RHSTA-1-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	0.97 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.97 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.97 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000045\|ARCol0oldRDRAFT_c01335	Not Available	1681	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10778288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	500	Open in IMG/M
3300000787\|JGI11643J11755_11791614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	627	Open in IMG/M
3300000891\|JGI10214J12806_11584416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	1136	Open in IMG/M
3300003369\|JGI24140J50213_10010388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3563	Open in IMG/M
3300004020\|Ga0055440_10106495	Not Available	673	Open in IMG/M
3300004114\|Ga0062593_101218573	Not Available	791	Open in IMG/M
3300004157\|Ga0062590_102580225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	540	Open in IMG/M
3300004463\|Ga0063356_101936384	Not Available	890	Open in IMG/M
3300004463\|Ga0063356_105374899	Not Available	550	Open in IMG/M
3300005162\|Ga0066814_10032354	Not Available	790	Open in IMG/M
3300005204\|Ga0068997_10097333	Not Available	631	Open in IMG/M
3300005328\|Ga0070676_10496695	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300005336\|Ga0070680_100056240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3216	Open in IMG/M
3300005343\|Ga0070687_100800835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	668	Open in IMG/M
3300005365\|Ga0070688_100156068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1564	Open in IMG/M
3300005444\|Ga0070694_100640188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	860	Open in IMG/M
3300005445\|Ga0070708_101547239	Not Available	618	Open in IMG/M
3300005457\|Ga0070662_100238836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1457	Open in IMG/M
3300005458\|Ga0070681_10906423	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300005466\|Ga0070685_11446363	Not Available	528	Open in IMG/M
3300005544\|Ga0070686_101158842	Not Available	640	Open in IMG/M
3300005545\|Ga0070695_100253975	All Organisms → cellular organisms → Bacteria → Proteobacteria	1281	Open in IMG/M
3300005545\|Ga0070695_100829431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	743	Open in IMG/M
3300005548\|Ga0070665_101723394	Not Available	634	Open in IMG/M
3300005549\|Ga0070704_100835119	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300006041\|Ga0075023_100184450	Not Available	794	Open in IMG/M
3300006049\|Ga0075417_10008353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3719	Open in IMG/M
3300006050\|Ga0075028_100006273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4687	Open in IMG/M
3300006050\|Ga0075028_100254590	Not Available	965	Open in IMG/M
3300006052\|Ga0075029_100327880	Not Available	982	Open in IMG/M
3300006057\|Ga0075026_100221185	Not Available	1004	Open in IMG/M
3300006057\|Ga0075026_100930940	Not Available	536	Open in IMG/M
3300006102\|Ga0075015_100659042	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300006174\|Ga0075014_100009278	All Organisms → cellular organisms → Bacteria	3367	Open in IMG/M
3300006178\|Ga0075367_10268288	Not Available	1072	Open in IMG/M
3300006237\|Ga0097621_100981203	Not Available	790	Open in IMG/M
3300006358\|Ga0068871_102117844	Not Available	536	Open in IMG/M
3300006638\|Ga0075522_10256567	Not Available	861	Open in IMG/M
3300006844\|Ga0075428_100106649	All Organisms → cellular organisms → Bacteria	3054	Open in IMG/M
3300007740\|Ga0104326_112637	Not Available	1246	Open in IMG/M
3300007822\|Ga0104325_112124	Not Available	1246	Open in IMG/M
3300009148\|Ga0105243_12116506	Not Available	598	Open in IMG/M
3300009156\|Ga0111538_13772522	Not Available	525	Open in IMG/M
3300009176\|Ga0105242_13138352	Not Available	512	Open in IMG/M
3300010371\|Ga0134125_11040455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	897	Open in IMG/M
3300010375\|Ga0105239_11018664	Not Available	952	Open in IMG/M
3300010397\|Ga0134124_10970907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	860	Open in IMG/M
3300010400\|Ga0134122_11008410	Not Available	816	Open in IMG/M
3300010400\|Ga0134122_11575591	Not Available	679	Open in IMG/M
3300011119\|Ga0105246_12062294	Not Available	552	Open in IMG/M
3300012495\|Ga0157323_1034174	Not Available	554	Open in IMG/M
3300012891\|Ga0157305_10290705	Not Available	508	Open in IMG/M
3300012912\|Ga0157306_10413215	Not Available	531	Open in IMG/M
3300012961\|Ga0164302_11754167	Not Available	522	Open in IMG/M
3300012984\|Ga0164309_10675781	Not Available	816	Open in IMG/M
3300013306\|Ga0163162_12655882	Not Available	576	Open in IMG/M
3300013503\|Ga0120127_10007693	All Organisms → cellular organisms → Bacteria	1739	Open in IMG/M
3300014054\|Ga0120135_1019588	Not Available	842	Open in IMG/M
3300015371\|Ga0132258_11094713	Not Available	2014	Open in IMG/M
3300015372\|Ga0132256_102476909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	621	Open in IMG/M
3300015374\|Ga0132255_100575860	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300015374\|Ga0132255_100947625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	1289	Open in IMG/M
3300018067\|Ga0184611_1299001	Not Available	560	Open in IMG/M
3300018072\|Ga0184635_10093465	Not Available	1186	Open in IMG/M
3300019361\|Ga0173482_10607546	Not Available	551	Open in IMG/M
3300022883\|Ga0247786_1036408	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	970	Open in IMG/M
3300023066\|Ga0247793_1022273	Not Available	923	Open in IMG/M
3300025315\|Ga0207697_10457977	Not Available	565	Open in IMG/M
3300025505\|Ga0207929_1023159	Not Available	1179	Open in IMG/M
3300025904\|Ga0207647_10331876	All Organisms → cellular organisms → Bacteria → Proteobacteria	863	Open in IMG/M
3300025907\|Ga0207645_10735643	All Organisms → cellular organisms → Bacteria → Proteobacteria	671	Open in IMG/M
3300025912\|Ga0207707_10355918	All Organisms → cellular organisms → Bacteria → Proteobacteria	1261	Open in IMG/M
3300025917\|Ga0207660_10284055	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300025921\|Ga0207652_11277681	Not Available	636	Open in IMG/M
3300025927\|Ga0207687_11675678	Not Available	545	Open in IMG/M
3300025930\|Ga0207701_10152366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	2049	Open in IMG/M
3300025936\|Ga0207670_10897940	Not Available	742	Open in IMG/M
3300025944\|Ga0207661_11698458	Not Available	577	Open in IMG/M
3300025961\|Ga0207712_10343159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1239	Open in IMG/M
3300025961\|Ga0207712_11632595	Not Available	578	Open in IMG/M
3300026075\|Ga0207708_10600616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas rhenobacensis	932	Open in IMG/M
3300026452\|Ga0256821_1031295	Not Available	593	Open in IMG/M
3300027617\|Ga0210002_1010226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1438	Open in IMG/M
3300027665\|Ga0209983_1075706	Not Available	752	Open in IMG/M
3300027695\|Ga0209966_1163204	Not Available	521	Open in IMG/M
3300027873\|Ga0209814_10003221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6059	Open in IMG/M
3300027880\|Ga0209481_10737857	Not Available	512	Open in IMG/M
3300027894\|Ga0209068_10029076	All Organisms → cellular organisms → Bacteria → Proteobacteria	2726	Open in IMG/M
3300027894\|Ga0209068_10289246	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	918	Open in IMG/M
3300027915\|Ga0209069_10042228	All Organisms → cellular organisms → Bacteria	2137	Open in IMG/M
3300027915\|Ga0209069_10612848	Not Available	628	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1041344	Not Available	967	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10019330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1754	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1124387	Not Available	635	Open in IMG/M
3300031446\|Ga0170820_16185486	Not Available	1026	Open in IMG/M
3300031944\|Ga0310884_10006530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4153	Open in IMG/M
3300033433\|Ga0326726_10043496	All Organisms → cellular organisms → Bacteria → Proteobacteria	3923	Open in IMG/M
3300033433\|Ga0326726_10060588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3324	Open in IMG/M
3300033433\|Ga0326726_10204290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1824	Open in IMG/M
3300033433\|Ga0326726_10711382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	969	Open in IMG/M
3300034090\|Ga0326723_0023037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2554	Open in IMG/M
3300034090\|Ga0326723_0255523	Not Available	782	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.96%
Host-Associated	Host-Associated	32.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.46%
Plants	Host-Associated → Plants	32.04%
Aquatic	Environmental → Aquatic	16.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.50%
Sediment	Environmental → Aquatic → Sediment	13.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.62%
Peat	Environmental → Terrestrial → Peat	5.83%
Roots	Host-Associated → Plants → Roots	2.91%
Marine	Environmental → Aquatic → Marine	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.21%
Loam	Environmental → Terrestrial → Soil → Loam	16.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.65%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.88%
Sand	Environmental → Terrestrial → Soil → Sand	2.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.97%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.97%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.88%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.97%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.97%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	11.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	5.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.88%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.91%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	2.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.97%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000045	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis Col-0 old rhizosphere	Host-Associated	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300007740	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-9-2 Soapdenovo	Environmental	Open in IMG/M
3300007822	Permafrost core soil microbial communities from Svalbard, Norway - sample 2-8-2 Soapdenovo	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014054	Permafrost microbial communities from Nunavut, Canada - A34_5cm_12M	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025505	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026452	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4	Environmental	Open in IMG/M
3300027617	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027665	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ARCol0oldRDRAFT_013352	3300000045	Arabidopsis Rhizosphere	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADXAAHKLSARN
ICChiseqgaiiFebDRAFT_107782881	3300000363	Soil	ILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAHKLSARN*
JGI11643J11755_117916142	3300000787	Soil	MQIIRECRMRAAILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAXKXSARN
JGI10214J12806_115844163	3300000891	Soil	RMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
JGI24140J50213_100103881	3300003369	Arctic Peat Soil	MRARILTAIAKDDPEMKNQLLYVAEKWLALAILREQLLANADRTANKKPDKPHSRQ*
Ga0055440_101064952	3300004020	Natural And Restored Wetlands	MQIIRECRMRAAILTRIAKDAPELENQLLYVANKWLTLAILRGQLNAGADRVAHKLPARRSVGRGPGSVVGRY*
Ga0062593_1012185732	3300004114	Soil	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLGEQLSADAELGGSTIRL
Ga0062590_1025802251	3300004157	Soil	AILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
Ga0063356_1019363841	3300004463	Arabidopsis Thaliana Rhizosphere	MQIIRECRTRAAILTELATDAPELENQLLYVAKKWLMLAILCEQLTAGADRAAHELSARN
Ga0063356_1053748991	3300004463	Arabidopsis Thaliana Rhizosphere	MQIIRECRMRAAILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAHKLSARN
Ga0066814_100323542	3300005162	Soil	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHK
Ga0068997_100973332	3300005204	Natural And Restored Wetlands	MQIIRECRMRAAIVIAIAKDAPELENQLLYVAEKWLTLAALREQLNAGAGRAAHKLPAPN
Ga0070676_104966951	3300005328	Miscanthus Rhizosphere	MRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0070680_1000562406	3300005336	Corn Rhizosphere	MRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
Ga0070687_1008008352	3300005343	Switchgrass Rhizosphere	TMRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0070688_1001560683	3300005365	Switchgrass Rhizosphere	MQIIRECRMRAAILTELATDAPGLEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0070694_1006401882	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MQIIRECRMRAAILTELAEDAPELENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN
Ga0070708_1015472391	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGGSSVSQVGNGTVQIILECRMRAAILTGIAKDAPELKIPLLYLAQEWLTLANLSEQFNVDPDRTAQKLPARH*
Ga0070662_1002388363	3300005457	Corn Rhizosphere	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAP
Ga0070681_109064233	3300005458	Corn Rhizosphere	CRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN*
Ga0070685_114463631	3300005466	Switchgrass Rhizosphere	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0070686_1011588421	3300005544	Switchgrass Rhizosphere	ILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0070695_1002539753	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIGEQLSSGADRALHKLFAP
Ga0070695_1008294311	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IIRECRMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN*
Ga0070665_1017233941	3300005548	Switchgrass Rhizosphere	SCVSQVGNGTMQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN*
Ga0070704_1008351191	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKL
Ga0075023_1001844502	3300006041	Watersheds	MQVIRECQVRAVILTELAKDAPEFENQLLYLAEKWLTLAIIGEQLNVDVDR
Ga0075417_100083531	3300006049	Populus Rhizosphere	VAMQIIRECRIRAAILTSIAKDAPELEIQLLYVAKEHLTLAIIIEQLNVGTYR
Ga0075028_1000062734	3300006050	Watersheds	MRATILIELAKDAPELEDQLLYVAKKWLTLAILSEQLNAGANLAANKLSARH*
Ga0075028_1002545902	3300006050	Watersheds	MQIIRECRMRAAILTAIAKDAPELESQLLYVAQKWLMLALLREQLNAGADQPPYRLRALR
Ga0075029_1003278802	3300006052	Watersheds	MQIIRECRMRAAILTAIAKDAPELESQLLYVAQNWLMLALLREQLNAGADQPP*
Ga0075026_1002211852	3300006057	Watersheds	MQIIRECRMRATILTELAKDAPELEDQLLYVAKKWLTLAILSEQLNAGANRAANKLSARH
Ga0075026_1009309401	3300006057	Watersheds	MLVVPVFPGVSQVGSGAMQIIRECRMRAAILTAIAKDAPELESQLLYVAQKWLMLALLREQLNAGADQPPYRLRALR*
Ga0075015_1006590421	3300006102	Watersheds	QIIRECRMRAAILTGLTKDAPELEIQLLYVAKIWLTLAILREQLNAAADRAAHKLPRRH*
Ga0075014_1000092784	3300006174	Watersheds	MLVVPVFPGVSQVGSGTMQIIRECRMRAAILTAIAKDAPELESQLLYVAQKWLMLALLREQLNAGADEPPYRLRALH*
Ga0075367_102682882	3300006178	Populus Endosphere	MQIVRECRLRAAILTELARDASEPELESQLLYVAQDWLTLACLREQLNADAQLRGPTLQS
Ga0097621_1009812031	3300006237	Miscanthus Rhizosphere	MQIVRECRLRAAILTELAKDTPEPEVESQLLYVAQDWLTLASLREQLIADA
Ga0068871_1021178442	3300006358	Miscanthus Rhizosphere	MQIVSECRLRAAILTELAKDTPEPELESQLLYVAQDWLTLASLREQLIADAQLGGPTIR*
Ga0075522_102565673	3300006638	Arctic Peat Soil	MRIIRECRMRARILTAIAKDDPEMKNQLLYVAEQWLALAMLREQLLANADRKPDKPHSRQ
Ga0075428_1001066492	3300006844	Populus Rhizosphere	MRAAILTGLAKDAPELEFQLLYVAKEYLALAMLREQLNADADRRAHKLPARH*
Ga0104326_1126372	3300007740	Soil	MQIARECRMRARILTAIAKDDPEMKNQLLYVAQKWLALAILREQLLAKADRKPDEPHSRQ
Ga0104325_1121242	3300007822	Soil	MQIARECRMRARILTATAKDDPEMKNQLLYVAQKWLALAILREQLLAKADRKPDEPHSRQ
Ga0105243_121165062	3300009148	Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLMLAIIAEQLSSGADRARHKLFAPN
Ga0111538_137725221	3300009156	Populus Rhizosphere	NAMQIIRECRLRAAILTELAKESPELESQLLYVARKWLALASIREQYVIDHAAHKLPALH
Ga0105242_131383521	3300009176	Miscanthus Rhizosphere	MQIIRECRMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAG
Ga0134125_110404551	3300010371	Terrestrial Soil	MQIIHECRMRATILIELAKEAPELESQLLYVANKWLTLAVLREQLNASSDQATNKFSARH
Ga0105239_110186642	3300010375	Corn Rhizosphere	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLREQLSADAEWGGSTIRL
Ga0134124_109709072	3300010397	Terrestrial Soil	MPIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0134122_110084102	3300010400	Terrestrial Soil	MQIVRECRLRAAILTELAKDTPEPEVESQLLYVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0134122_115755911	3300010400	Terrestrial Soil	MPIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0105246_120622942	3300011119	Miscanthus Rhizosphere	PCVSQVGSGTMRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0157323_10341742	3300012495	Arabidopsis Rhizosphere	MQIIRECRVRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0157305_102907051	3300012891	Soil	MRAAILIGLAKDAPELENQLVYVAQKWLTLAIIAEQLSSGADRARHKLFAPN*
Ga0157306_104132151	3300012912	Soil	MQIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0164302_117541671	3300012961	Soil	GVAPCKSFAILTGLAKDGPELENQLLYVVKKWLTLAIIGEQLSSGADRALHKLFAPN*
Ga0164309_106757812	3300012984	Soil	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLMLAILSEQFNAGADAAAHKLSARN
Ga0163162_126558822	3300013306	Switchgrass Rhizosphere	MQIVRECRLRAAILTELAKDAPEPELESQLLYVAQDWLTLASLREQLSADAELGGSTIRL
Ga0120127_100076933	3300013503	Permafrost	MQIVRECRMRAWILTAIAKDDPEMKNQLLYVAEQWLALAMLREQLLANADRKPDKPHSRQ
Ga0120135_10195882	3300014054	Permafrost	MRIVRERRTRARILTAIAKDDPEMKNQLLYVAEKWLALAMLREQLLANADRKPDKPHSRQ
Ga0132258_110947132	3300015371	Arabidopsis Rhizosphere	MQIIRECRMRAAILTSIAKEAPELEIQLLYVAEEWLTLAIISEQLNAGTDCGGP*
Ga0132256_1024769091	3300015372	Arabidopsis Rhizosphere	RECRMRATILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN*
Ga0132255_1005758601	3300015374	Arabidopsis Rhizosphere	MQIIRECRMRAAILTSIAKEAPELEIQLLYVAEEWLTLAIISEQLNAGTDWGGP*
Ga0132255_1009476252	3300015374	Arabidopsis Rhizosphere	AAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN*
Ga0184611_12990011	3300018067	Groundwater Sediment	MPIIRECRMRAAILTGLAKDAPELENQLLYVAEKWLTLASIAEQLSSGADRALHKLFAPN
Ga0184635_100934651	3300018072	Groundwater Sediment	MPIIRECRMRAAILTGLAKDAPELENQLLYVAEKWLTLAIIAEQLSSGADRALHKLFAPN
Ga0173482_106075462	3300019361	Soil	AVGPCVSQVGSGTMRIIRECRMRAAILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0247786_10364082	3300022883	Soil	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKL
Ga0247793_10222732	3300023066	Soil	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0207697_104579771	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0207929_10231592	3300025505	Arctic Peat Soil	MRIIRECRMRARILTAIAKDDPEMKNQLLYVAQKWLALAILREQLLANADRKPDKPRPRQ
Ga0207647_103318761	3300025904	Corn Rhizosphere	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0207645_107356431	3300025907	Miscanthus Rhizosphere	SQVGNGTMQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0207707_103559182	3300025912	Corn Rhizosphere	MQIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0207660_102840552	3300025917	Corn Rhizosphere	MPIIRECRMRAAILAELATDAPEFENQLLYVAKKWLMLANLCEQLTAGADRAAHKLSARN
Ga0207652_112776812	3300025921	Corn Rhizosphere	RAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRAAHKLSARN
Ga0207687_116756782	3300025927	Miscanthus Rhizosphere	MRIIRECRMRAVILIELAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADR
Ga0207701_101523665	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRARHKLFAPN
Ga0207670_108979402	3300025936	Switchgrass Rhizosphere	MQIVSECRLRAAILTELAKDTPEPELESQLLHVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0207661_116984582	3300025944	Corn Rhizosphere	MQIVRECRLRAAILTELAKDTPEPELESQLLYVAQDWLTLASLREQLIADAQLGGPTIRL
Ga0207712_103431592	3300025961	Switchgrass Rhizosphere	TMQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSAR
Ga0207712_116325951	3300025961	Switchgrass Rhizosphere	MQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGAD
Ga0207708_106006162	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPIIRECRMRAAILAELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADRAAHKLSARN
Ga0256821_10312951	3300026452	Sediment	MQIIRECRMRAAILTGIAKDAPELENQLLYVANKWLTLAILRGQLNAGADRVAHKLPARRPVGRGPGSVVGRY
Ga0210002_10102261	3300027617	Arabidopsis Thaliana Rhizosphere	CRMRAAILIGLAKDAPELENQLVYVAQKWLTLAIIAEQLSSGADRARHKLFAPN
Ga0209983_10757061	3300027665	Arabidopsis Thaliana Rhizosphere	MQIIRECRMRAAILTELATDAPALEDQLLYVAKKWVMLAILCEQLTAGADRAAHELSARN
Ga0209966_11632041	3300027695	Arabidopsis Thaliana Rhizosphere	MQIIRECRMRAAILTELATDASALEDQLLYVAKKWVMLAILCEQLTAGADRAAHKLSARN
Ga0209814_100032211	3300027873	Populus Rhizosphere	MRAAILTGLAKDAPELEFQLLYVAKEYLALAMLREQLNADADRRAHKLPARH
Ga0209481_107378572	3300027880	Populus Rhizosphere	MQIIRECRMRAAILTGLAKDAPELEFQLLYVAKEYLALAMLREQLNADADRRAHKLPARH
Ga0209068_100290762	3300027894	Watersheds	VQIIRECRMRATILIELAKDAPELEDQLLYVAKKWLTLAILSEQLNAGANLAANKLSARH
Ga0209068_102892463	3300027894	Watersheds	MQIIHECRMRAVILTELAKDAPEFENQLLYLAEKWLTLAIIGEQLNVDVDRAAHKLSTGH
Ga0209069_100422281	3300027915	Watersheds	TQIIRECRMRAAILTGLTKDAPELEIQLLYVAKIWLTLAILREQLNAAADRAAHKLPRRH
Ga0209069_106128482	3300027915	Watersheds	MQIICECRIRAAILTELAKDSPEFENQLLYVAKKWLTLAIIREQLIAGADRAAHKLSARN
(restricted) Ga0255311_10413442	3300031150	Sandy Soil	MRIIRECRMRAAILIEFAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFAPN
(restricted) Ga0255310_100193302	3300031197	Sandy Soil	MQIIRECRMRAAILIGLAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFASN
(restricted) Ga0255312_11243871	3300031248	Sandy Soil	MRIIRECRMRAAILIGLAKDAPELENQLVYVAEKWLTLAIIAEQLSSGADRARHKLFASN
Ga0170820_161854862	3300031446	Forest Soil	MQIVRECRMRAAILTGIAKDAPEVESQLLYLAQKWLTLAVLREQLINAHKDQLPDDPPSL
Ga0310884_100065308	3300031944	Soil	SSCVSQVGNGTMQIIRECRMRAAILTELATDAPELEDQLLYVAKKWLTLAILCEQLTAGADQAAHKLSARN
Ga0326726_100434965	3300033433	Peat Soil	MQIIRECRMRAVILTELAKDAPEFESQLLYVAEKWLILAILSEQLNADTDRAAHKLPALH
Ga0326726_100605884	3300033433	Peat Soil	MQIIRECRMRAVILTELAKDDPEFESQLLYLAQKWLTLAITREQLIAGTDRAHVCF
Ga0326726_102042903	3300033433	Peat Soil	MQIICECRIRAAILTELAKDAPEFENQLLYVAKKWLTLAIISEQLIAGADRAAHKLSARN
Ga0326726_107113821	3300033433	Peat Soil	MQLIRECWMRSVILTELAKDAPEFESQLLYVAKKWLTLAILSEQLSAGADTAALKSLARH
Ga0326723_0023037_13_171	3300034090	Peat Soil	MRATILTGIAKDAPELENQLLYVAEEWLALAALREQLNIGADRAAHKLPAPN
Ga0326723_0255523_604_762	3300034090	Peat Soil	MRAVILTELAKDAPEFANQLLYLAENWLTLAIIGEQLNVDVDRAAHKLSTRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters