NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F099691

Metagenome Family F099691

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F099691
Family Type Metagenome
Number of Sequences 103
Average Sequence Length 53 residues
Representative Sequence MRAVTEYRDRAQECRKLARMVHKLEDKYALDCAAQSWERLADRRERDIDAEN
Number of Associated Samples 66
Number of Associated Scaffolds 103

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 54.37 %
% of genes near scaffold ends (potentially truncated) 40.78 %
% of genes from short scaffolds (< 2000 bps) 83.50 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction Yes
3D model pTM-score0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (58.252 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(27.184 % of family members)
Environment Ontology (ENVO) Unclassified
(49.515 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(66.019 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.75%    β-sheet: 0.00%    Coil/Unstructured: 41.25%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.76
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.25.1.1: Ferritind4iwka_4iwk0.94934
a.25.1.1: Ferritind6txia_6txi0.9411
a.25.1.0: automated matchesd6sooa_6soo0.92765
a.25.1.2: Ribonucleotide reductase-liked3n20b_3n200.91536
a.25.1.1: Ferritind2fzfa12fzf0.9136


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 103 Family Scaffolds
PF04392ABC_sub_bind 4.85
PF13649Methyltransf_25 2.91
PF12847Methyltransf_18 1.94
PF03401TctC 1.94
PF13356Arm-DNA-bind_3 0.97
PF00486Trans_reg_C 0.97
PF12327FtsZ_C 0.97
PF11146DUF2905 0.97
PF00091Tubulin 0.97
PF03473MOSC 0.97
PF01928CYTH 0.97
PF09954DUF2188 0.97
PF03176MMPL 0.97
PF02780Transketolase_C 0.97
PF07345DUF1476 0.97

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 103 Family Scaffolds
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 4.85
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 1.94
COG1033Predicted exporter protein, RND superfamilyGeneral function prediction only [R] 0.97
COG2409Predicted lipid transporter YdfJ, MMPL/SSD domain, RND superfamilyGeneral function prediction only [R] 0.97


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A58.25 %
All OrganismsrootAll Organisms41.75 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000597|AF_2010_repII_A1DRAFT_10000617All Organisms → cellular organisms → Bacteria8427Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10170449All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis518Open in IMG/M
3300000793|AF_2010_repII_A001DRAFT_10000075All Organisms → cellular organisms → Bacteria15621Open in IMG/M
3300001867|JGI12627J18819_10176733Not Available865Open in IMG/M
3300004633|Ga0066395_10003811All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5219Open in IMG/M
3300004633|Ga0066395_10195952All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300005332|Ga0066388_100054952All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4143Open in IMG/M
3300005332|Ga0066388_100274761All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2327Open in IMG/M
3300005332|Ga0066388_100870947All Organisms → cellular organisms → Bacteria1483Open in IMG/M
3300005332|Ga0066388_101379701All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300005332|Ga0066388_102708139Not Available905Open in IMG/M
3300005332|Ga0066388_103272556Not Available828Open in IMG/M
3300005332|Ga0066388_103394718Not Available813Open in IMG/M
3300005332|Ga0066388_104624288Not Available700Open in IMG/M
3300005332|Ga0066388_105980878All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales615Open in IMG/M
3300005332|Ga0066388_108728320Not Available503Open in IMG/M
3300005439|Ga0070711_100177121All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1630Open in IMG/M
3300005713|Ga0066905_100676497All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales883Open in IMG/M
3300005764|Ga0066903_100982955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1540Open in IMG/M
3300005764|Ga0066903_101773256Not Available1178Open in IMG/M
3300005764|Ga0066903_106358138All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales616Open in IMG/M
3300006174|Ga0075014_100398612Not Available750Open in IMG/M
3300009792|Ga0126374_10130472All Organisms → cellular organisms → Bacteria1487Open in IMG/M
3300010046|Ga0126384_10585930Not Available974Open in IMG/M
3300010048|Ga0126373_10150180All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_72213Open in IMG/M
3300010048|Ga0126373_11179679Not Available832Open in IMG/M
3300010048|Ga0126373_12190810Not Available614Open in IMG/M
3300010361|Ga0126378_10667964Not Available1152Open in IMG/M
3300010376|Ga0126381_100207863Not Available2622Open in IMG/M
3300012948|Ga0126375_10082109All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68601848Open in IMG/M
3300012971|Ga0126369_10533926Not Available1236Open in IMG/M
3300016294|Ga0182041_10102206All Organisms → cellular organisms → Bacteria2109Open in IMG/M
3300016341|Ga0182035_10292296All Organisms → cellular organisms → Bacteria1333Open in IMG/M
3300016371|Ga0182034_10989648Not Available726Open in IMG/M
3300016371|Ga0182034_11379173Not Available616Open in IMG/M
3300016404|Ga0182037_10644116Not Available903Open in IMG/M
3300016445|Ga0182038_10038682All Organisms → cellular organisms → Bacteria3082Open in IMG/M
3300016445|Ga0182038_10709896Not Available876Open in IMG/M
3300016445|Ga0182038_12000250Not Available525Open in IMG/M
3300017974|Ga0187777_10950291Not Available620Open in IMG/M
3300017993|Ga0187823_10093644Not Available889Open in IMG/M
3300018032|Ga0187788_10388055Not Available584Open in IMG/M
3300018058|Ga0187766_10490323Not Available826Open in IMG/M
3300021560|Ga0126371_10049788Not Available4006Open in IMG/M
3300021560|Ga0126371_10542476Not Available1312Open in IMG/M
3300021560|Ga0126371_10559527Not Available1292Open in IMG/M
3300021560|Ga0126371_10847977Not Available1059Open in IMG/M
3300021560|Ga0126371_11509571Not Available800Open in IMG/M
3300021560|Ga0126371_11772035All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Nordella → unclassified Nordella → Nordella sp. HKS 07740Open in IMG/M
3300021560|Ga0126371_12340031Not Available646Open in IMG/M
3300021560|Ga0126371_13257203Not Available549Open in IMG/M
3300026817|Ga0207775_105455All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300026871|Ga0207825_114518Not Available534Open in IMG/M
3300026872|Ga0207785_1026858Not Available502Open in IMG/M
3300027703|Ga0207862_1163415Not Available665Open in IMG/M
3300027874|Ga0209465_10000844All Organisms → cellular organisms → Bacteria13981Open in IMG/M
3300031231|Ga0170824_105023337All Organisms → cellular organisms → Bacteria2214Open in IMG/M
3300031543|Ga0318516_10008383All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4884Open in IMG/M
3300031545|Ga0318541_10652118Not Available588Open in IMG/M
3300031549|Ga0318571_10322223Not Available586Open in IMG/M
3300031573|Ga0310915_10153022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Actinacidiphila → Actinacidiphila acididurans1595Open in IMG/M
3300031573|Ga0310915_11296988Not Available501Open in IMG/M
3300031640|Ga0318555_10458509All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7691Open in IMG/M
3300031668|Ga0318542_10232821All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300031682|Ga0318560_10037538All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_72330Open in IMG/M
3300031719|Ga0306917_10224909All Organisms → cellular organisms → Bacteria → Proteobacteria1430Open in IMG/M
3300031719|Ga0306917_11095283Not Available620Open in IMG/M
3300031744|Ga0306918_10088378Not Available2175Open in IMG/M
3300031744|Ga0306918_10230715Not Available1406Open in IMG/M
3300031747|Ga0318502_10684430Not Available619Open in IMG/M
3300031751|Ga0318494_10087260All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1704Open in IMG/M
3300031753|Ga0307477_10588157Not Available751Open in IMG/M
3300031754|Ga0307475_11284777Not Available567Open in IMG/M
3300031768|Ga0318509_10114483Not Available1465Open in IMG/M
3300031769|Ga0318526_10415672Not Available550Open in IMG/M
3300031781|Ga0318547_10438992All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300031781|Ga0318547_10863303Not Available564Open in IMG/M
3300031781|Ga0318547_10975132All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales529Open in IMG/M
3300031782|Ga0318552_10291390Not Available829Open in IMG/M
3300031793|Ga0318548_10089443All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_71464Open in IMG/M
3300031794|Ga0318503_10166503Not Available712Open in IMG/M
3300031805|Ga0318497_10073294All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1803Open in IMG/M
3300031820|Ga0307473_11554328Not Available503Open in IMG/M
3300031821|Ga0318567_10068986All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1865Open in IMG/M
3300031833|Ga0310917_10235516All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium freirei → Rhizobium freirei PRF 811230Open in IMG/M
3300031833|Ga0310917_10374024Not Available968Open in IMG/M
3300031890|Ga0306925_10074253All Organisms → cellular organisms → Bacteria3581Open in IMG/M
3300031890|Ga0306925_10262230All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1862Open in IMG/M
3300031890|Ga0306925_10576691All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1190Open in IMG/M
3300031897|Ga0318520_10200392All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300031910|Ga0306923_11388214Not Available740Open in IMG/M
3300031910|Ga0306923_11983399Not Available591Open in IMG/M
3300031912|Ga0306921_10178255Not Available2491Open in IMG/M
3300031945|Ga0310913_11020211Not Available579Open in IMG/M
3300031947|Ga0310909_10313427All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1315Open in IMG/M
3300031947|Ga0310909_10657152Not Available873Open in IMG/M
3300031954|Ga0306926_11829099Not Available688Open in IMG/M
3300032035|Ga0310911_10310883Not Available907Open in IMG/M
3300032076|Ga0306924_10484428Not Available1410Open in IMG/M
3300032091|Ga0318577_10110173All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1294Open in IMG/M
3300032261|Ga0306920_101010649Not Available1210Open in IMG/M
3300032261|Ga0306920_101198726Not Available1097Open in IMG/M
3300032261|Ga0306920_101566255Not Available938Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil27.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil22.33%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil20.39%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil16.50%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.91%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.91%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.97%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.97%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.97%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000793Forest soil microbial communities from Amazon forest - 2010 replicate II A001EnvironmentalOpen in IMG/M
3300001867Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300018032Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP10_20_MGEnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300026817Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes)EnvironmentalOpen in IMG/M
3300026871Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78 (SPAdes)EnvironmentalOpen in IMG/M
3300026872Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)EnvironmentalOpen in IMG/M
3300027703Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A1DRAFT_1000061753300000597Forest SoilMRAVIEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED*
AF_2010_repII_A1DRAFT_1017044913300000597Forest SoilMRAVTEYRQRARDCRELARMVHKREDRYALDHAAQSWERLAKRCERDIEADAAQPTPHSAAL*
AF_2010_repII_A001DRAFT_1000007563300000793Forest SoilMGAEDYLMRAVIEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED*
JGI12627J18819_1017673313300001867Forest SoilMRAVTEYRQRARECRDLARMVDKLEDKYALDCAAQSWERLADRRERDSEAED*
Ga0066395_1000381133300004633Tropical Forest SoilMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED*
Ga0066395_1019595233300004633Tropical Forest SoilMGAEDYSMRAVAEYRDRARECRELARMVHKLEDKYALACAAQSWERLADRRERDTEPEG*
Ga0066388_10005495233300005332Tropical Forest SoilMRAVTEYRQRARECRELARMVDKLEDKYALDCAAQSWERLAERREHDIGAED*
Ga0066388_10027476143300005332Tropical Forest SoilMRAVTEYRDRAQECRKLARMVHKLEDKYALDSAAQSWERLADRRE
Ga0066388_10087094723300005332Tropical Forest SoilMRAITEYRQRARACRELARMVDKLDDKYALDCAAQSWERLAARSERDIDPED*
Ga0066388_10137970123300005332Tropical Forest SoilMGAEDNSMRAVAEYRDRAQECRKLARMVCKLEDKYALDHAAQSWERLADRCSRDIEAED*
Ga0066388_10270813923300005332Tropical Forest SoilSMRAVTEYRDRAQECRKLARMVHKLEDKYALDAQSWERLADRREHDIEAED*
Ga0066388_10327255613300005332Tropical Forest SoilMRPVTEYRQRARECRELARMVHKLDDKHALDCAAQSWERLADRSEHDIELEDLGPRQATERECH*
Ga0066388_10339471813300005332Tropical Forest SoilMGAEESSMRAVTEYRQRARDCRELARMVHTLDDKLALDHAAQSWERLAERCELEADD*
Ga0066388_10462428823300005332Tropical Forest SoilMRAVAEYRDRARECRELARMVHKLEDKYALACAAQSWERLADRRERDTEPEG*
Ga0066388_10598087813300005332Tropical Forest SoilMRAVTDYRERARECRKLAGMVHKLEDKYALDRAAQSWERLAERRERD
Ga0066388_10872832013300005332Tropical Forest SoilMRAVTEYRLRARDCRDLARVVHKLEDKHALDCAAQSWERLADRCERDIDAED*
Ga0070711_10017712123300005439Corn, Switchgrass And Miscanthus RhizosphereMRAVTEYRDRAQECRKLARMVHKLEDKYALDCAAQSWERLADRRERDIDAEN*
Ga0066905_10067649733300005713Tropical Forest SoilMGAEDNSMRALAEYRDRAQECRKLARMVCKLEDKYALDHAAQSWERLADRCSRDIEAED*
Ga0066903_10098295523300005764Tropical Forest SoilMRAVTEYRERARECRKLARMVHKLEDKYALDRAAQSWERLAERRERDVEAED*
Ga0066903_10177325633300005764Tropical Forest SoilMRAVTEYRDRAQECRKLARIVHRLEDKYALDCAAQSWERLAERYERDIAAED*
Ga0066903_10635813813300005764Tropical Forest SoilMRAETEYRDRAQECRKLAKMVHRLEDKYALASAAQSWERLADRCERDIAAED*
Ga0075014_10039861213300006174WatershedsMGAEDHSMRTVTEYRDRAQECRKLARMVHKLEDKYALDCAAQSWERLADRRERDIEAED*
Ga0126374_1013047223300009792Tropical Forest SoilMGAEDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED*
Ga0126384_1058593023300010046Tropical Forest SoilMGAEDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRRERDTEPEG*
Ga0126373_1015018023300010048Tropical Forest SoilMGAEDHSMRAVTEYRDRAQECRKLARMVHKLEDKYALDSAAQSWERLADRRERDFEAED*
Ga0126373_1117967923300010048Tropical Forest SoilMRAVTEYRDRARECRELARMVHKLEDKYALDSAAHSWERLADRRERDIEAQD*
Ga0126373_1219081013300010048Tropical Forest SoilMRAVTEYRERARECRKLARMVHKLEDKYALDHAAQSWERLAERSERDIED*
Ga0126378_1066796413300010361Tropical Forest SoilMRAVTEYRERARECRELARMVHKLEDKYALDHAAQSWERLAERSERDIED*
Ga0126381_10020786313300010376Tropical Forest SoilMRAATEYRKRAWECRKLAIMVHNLEDKYALDCAAQSWERLADRRERDIDAED*
Ga0126375_1008210913300012948Tropical Forest SoilMGAEDNSMRAVAEYRDRAQECRKLARMVCKLEDKYALDHAAQSWERLADRCSRYIEAED*
Ga0126369_1053392633300012971Tropical Forest SoilRRGMGAEDYSMRAVAEYRDRARECRELSRMVHKLEDKYALDCAAQSWERLADRRERDTEPEG*
Ga0182041_1010220653300016294SoilMRAVTEYRNRAQECRKLARMVHRLEDKYALDCAAQSWQRLADRYERDIAAED
Ga0182035_1029229633300016341SoilMRAVTEYRNRAQECRKLARIVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0182034_1098964813300016371SoilMRAVTEYRQRARDCRELARMVHTLDDKLALDHAAQSWERLAERCE
Ga0182034_1137917313300016371SoilMRTVTEFRDRAEECRKLARIVCKLEDKYALDHAAKSWERLADRHEREIGAED
Ga0182037_1064411613300016404SoilRAQECRKLARMVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0182038_1003868213300016445SoilMRAVIEYRKRAWECRKLAIMVHNLEDKYALDCAAQSWERLADRRERDTEPEG
Ga0182038_1070989633300016445SoilMRAVTEYRKRAWECRKLASMVHNLEDKYALDHAAQSWERLAA
Ga0182038_1200025013300016445SoilAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQRERLADRYERDIAAED
Ga0187777_1095029113300017974Tropical PeatlandMGAEDYSMRAVTEYRHRALECRRLARMVRSLEDKYALDRAAQSWERLADRHERDVEAED
Ga0187823_1009364423300017993Freshwater SedimentMRAVTEYRQRARECRELARMVHKLEDKYSLECAAQSWEGLAERRERDIE
Ga0187788_1038805523300018032Tropical PeatlandMRAVTEYGQRARECRELARMVDKLEDKYALDCAAQSWERLAERREHDIEAAD
Ga0187766_1049032313300018058Tropical PeatlandMRAVTEYRHRALECRRLARMVRSLEDKYALDRAAQSWER
Ga0126371_1004978863300021560Tropical Forest SoilMRPVTEYRQRARECRELARMVHKLDDKHALDCAAQSWERLADRSEHDIELEDLGPRQATERECH
Ga0126371_1054247623300021560Tropical Forest SoilMRAVTEYRDRARECRELARMVHKLEDKYALDSAAHSWERLADRRERDIEAQD
Ga0126371_1055952723300021560Tropical Forest SoilMRPVIEYRLRARACRELARMVAKLDDKYALDCAAQSWERLAERRERDIDAED
Ga0126371_1084797723300021560Tropical Forest SoilMGAEDYSMRAVAEYRDRARECRELARMVHKLEDKYALACAAQSWERLADRRERDTEPEG
Ga0126371_1150957123300021560Tropical Forest SoilMGAEDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0126371_1177203513300021560Tropical Forest SoilMRAVLEYRDRAKECRELARMVHKLEDKYALDCAAQSWERLADRRERDIDAED
Ga0126371_1234003113300021560Tropical Forest SoilMRAVTEYRQRARECRELARMVDKLEDKYALDCAAQSWERLAE
Ga0126371_1325720313300021560Tropical Forest SoilMRAVTEFRLRARQCRVLARMVDRLDDKYALDCAAQSWERLAERRERDIDAED
Ga0207775_10545523300026817Tropical Forest SoilHRMRAVTEYRKRAWECRKLASMVHNLEDKYALDCAAQGWERLADRSERDIDAED
Ga0207825_11451813300026871Tropical Forest SoilFIYGDGRGDHRMRAVTEYRKRAWECRKLASMVHNLEDKYALDCAAQGWERLADRSERDIDAED
Ga0207785_102685823300026872Tropical Forest SoilMRAVTGYRKRAWECRKLASMVHNLEDKYALDCAAQGWERLADRSERDIDAED
Ga0207862_116341523300027703Tropical Forest SoilENHCMRAVTEYRERARARRELARRVHKLEDKYALDRAAQSWERLAKRCERDIEAED
Ga0209465_10000844123300027874Tropical Forest SoilMRAVAEYRDRARECRELARMVHKLEDKYALACAAQSWERLADRRERDTEPEG
Ga0170824_10502333723300031231Forest SoilMRAVTEYRQRARECRELARMVDKLEDKYALDCAAQSWERLAERREHDIGAEN
Ga0318516_1000838343300031543SoilMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0318541_1065211813300031545SoilVVGMGAEDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQRERLADRYERDIAAE
Ga0318571_1032222313300031549SoilMGAEDYSMRAVAEYRDRARECRELSRMVHKLEDKYALDCAAQSWERLADRRERDTEPEG
Ga0310915_1015302223300031573SoilMRAVAEYRDRARECRELSRMVHKLEDKYALDCAAQSWERLADRRERDTEPEG
Ga0310915_1129698813300031573SoilMRAVIEYRKRAWECRKLAIMVHNLEDKYALDCAAQSWERLADRRERD
Ga0318555_1045850913300031640SoilMRAVTEYRDRAQECRKLARMVHKLEDKYALDSAAQSWER
Ga0318542_1023282123300031668SoilSMGMGAEMIVCAAVTEYRKRAWECRKLASMVHNLEDKYALDCAAQGWERLADRSERDIDAED
Ga0318560_1003753823300031682SoilMRAVTEYRDRAQECRKLARMVHKLEDKYALDSAAQSWERLADRRERDFEAED
Ga0306917_1022490913300031719SoilNGGICFSVGMGAEIIMRAVIEYRKRAWECRKLAIMVHNLEDKYALDCAAQSWERLADRRERDIDAED
Ga0306917_1109528323300031719SoilMRAVTEYRQRARDCRELARMVHTLDDKLALDHAAQSWERLAERCELEAD
Ga0306918_1008837863300031744SoilMRAVTEYRNRAQECRKLARMVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0306918_1023071523300031744SoilMGAEESSMRAVTEYRQRARDCRELARMVHTLDDKLALDHAAQSWERLAERCELEADD
Ga0318502_1068443023300031747SoilMGAEDYSMRAVAEYRDRARECRELARMVHKLEDKYALDCAAQSWERLADRRERDTEPEG
Ga0318494_1008726023300031751SoilLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0307477_1058815713300031753Hardwood Forest SoilCMRAVTEYRDRAQECRKLARMVHKLEDKYALDCAAQSWERLADRRERDIDAEN
Ga0307475_1128477713300031754Hardwood Forest SoilMRAVTEYRQRARDCRQLSRMVDKLEDKYALDCAAQSWERLA
Ga0318509_1011448353300031768SoilMRAVTEYRNRAQECRKLARMVHRLEDKYALDCAAQSWERLADRYERDIA
Ga0318526_1041567223300031769SoilLSRRFHKTDYSMRAVAEYRDRARECRELARMVHKLEDKYALDCAAQSWERLADRRERDTEPEG
Ga0318547_1043899213300031781SoilMRAVAEYRDRARECRELARMVHKLEDKYALACAAQSWERLAD
Ga0318547_1086330313300031781SoilSRRGMGAEDYSMRAVAEYRDRARECRELARMVHKLEDKYALDCAAQSWERLADRRERDTEPEG
Ga0318547_1097513223300031781SoilMRAVTEYRDRAQECRKLARMVHKLEDKYALDSAAQSWE
Ga0318552_1029139013300031782SoilEDYSMRAVAEYRDRARECRELSRMVHKLEDKYALDCAAQSWERLADRRERDTEPEG
Ga0318548_1008944323300031793SoilMGAEDHSMRAVTEYRDRAQECRKLARMVHKLEDKYALDSAAQSWERLADRRERDFEAED
Ga0318503_1016650313300031794SoilMRAVTEYRQRARECRELARMVDKLEDKYALDCAAQSWER
Ga0318497_1007329423300031805SoilMGAGDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0307473_1155432823300031820Hardwood Forest SoilEDHSMRTVTEYRDRAQECRKLARMVHKLEDKYALDCAAQSWERLADRRERDIDAEN
Ga0318567_1006898613300031821SoilYLMRAVTEYRDRAQECRKLARMVHKLEDKYALDSAAQSWERLADRRERDFEAED
Ga0310917_1023551623300031833SoilMGAEIIMRAVIEYRKRAWECRKLAIMVHNLEDKYALDCAAQSWERLADRRERDIDAED
Ga0310917_1037402413300031833SoilNIFSHGDGRGVHRMRAVTEYRKRAWECRKLASMVHNLEDKYALDHAAQSWERLAARQERDIEAED
Ga0306925_1007425353300031890SoilMGAEDYSMRAVTEYRNRAQECRKLARMVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0306925_1026223023300031890SoilMRAITEYRERARECRELARMVHKLEDKCALDHAAQSWERLAERSERDIED
Ga0306925_1057669123300031890SoilMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQRERLADRYERDIAAED
Ga0318520_1020039213300031897SoilRAVTEYRNRAQECRKLARMVHRLEDKYALDCAAQSWERLADRYERDIAAED
Ga0306923_1138821443300031910SoilMRAVTEYRNRAQECRKLARMVHRLEDKYALDCAAQSWERLADRYERDI
Ga0306923_1198339913300031910SoilMGAEIISMRTVTEFRDRAEECRKLARIVCKLEDKYALDHAAKSWERLADRHEREIGAED
Ga0306921_1017825523300031912SoilMRAVIEYRKRAWECRKLAIMVHNLEDKYALDCAAQSWERLADRRERDIDAED
Ga0310913_1102021113300031945SoilLLVVGMGAEDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQRERLADRYERDIAAED
Ga0310909_1031342733300031947SoilRKRAWECRKLASMVHNLEDKYALDCAAQGWERLADRSERDIDAED
Ga0310909_1065715213300031947SoilMRAVTEYRKRAWECRKLASMVHSLEDKYALDCAAQGWERLADRSERDIDAED
Ga0306926_1182909923300031954SoilAEDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQRERLADRYERDIAAED
Ga0310911_1031088333300032035SoilRMRAVTEYRKRAWECRKLASMVHNLEDKYALDHAAQSWERLAARQERDIEAED
Ga0306924_1048442823300032076SoilLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQRERLADRYERDIAAED
Ga0318577_1011017323300032091SoilEYRDRAQECRKLARMVHKLEDKYALDSAAQSWERLADRRERDFEAED
Ga0306920_10101064913300032261SoilMRAVTEYRKRAWECRKLASMVHNLEDKYALDHAAQSWERLAARQERDIEAED
Ga0306920_10119872623300032261SoilMRPVTEYRQRARECRELARMIRNLDDKHALDCAAQSWERLADRSEHELELED
Ga0306920_10156625513300032261SoilMGAEDYLMRAVTEYRDRAQECRKLARLVHRLEDKYALDCAAQRERLADRYERDIAAED


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