Metagenome / Metatranscriptome Family F099638

Basic Information
Family ID	F099638
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	47 residues
Representative Sequence	GIECGYRDTEAIDSQLEDFTAAGPREILVHAPDLEAARALLDEAE
Number of Associated Samples	94
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.06 %
% of genes from short scaffolds (< 2000 bps)	95.15 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Most Common Taxonomy
Group	Bacteria (82.524 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (14.563 % of family members)
Environment Ontology (ENVO)	Unclassified (26.214 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.369 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.03% β-sheet: 13.70% Coil/Unstructured: 60.27%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF09413	DUF2007	7.77
PF00903	Glyoxalase	7.77
PF09723	Zn-ribbon_8	6.80
PF07883	Cupin_2	2.91
PF13231	PMT_2	1.94
PF07690	MFS_1	1.94
PF00035	dsrm	1.94
PF03575	Peptidase_S51	1.94
PF05496	RuvB_N	1.94
PF14079	DUF4260	1.94
PF00196	GerE	1.94
PF03706	LPG_synthase_TM	0.97
PF13185	GAF_2	0.97
PF07676	PD40	0.97
PF01022	HTH_5	0.97
PF13424	TPR_12	0.97
PF01872	RibD_C	0.97
PF01625	PMSR	0.97
PF02518	HATPase_c	0.97
PF13340	DUF4096	0.97
PF08240	ADH_N	0.97
PF00254	FKBP_C	0.97
PF03413	PepSY	0.97
PF00291	PALP	0.97
PF00132	Hexapep	0.97
PF08447	PAS_3	0.97
PF01545	Cation_efflux	0.97
PF13365	Trypsin_2	0.97
PF00909	Ammonium_transp	0.97
PF00106	adh_short	0.97
PF03795	YCII	0.97
PF13489	Methyltransf_23	0.97
PF00583	Acetyltransf_1	0.97
PF01569	PAP2	0.97
PF00440	TetR_N	0.97
PF00892	EamA	0.97
PF01636	APH	0.97
PF13673	Acetyltransf_10	0.97
PF00027	cNMP_binding	0.97
PF02628	COX15-CtaA	0.97
PF08327	AHSA1	0.97
PF05147	LANC_like	0.97
PF13377	Peripla_BP_3	0.97
PF03992	ABM	0.97
PF12464	Mac	0.97
PF01594	AI-2E_transport	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG2255	Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB	Replication, recombination and repair [L]	1.94
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.97
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.97
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.97
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.97
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.97
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.97
COG1612	Heme A synthase	Coenzyme transport and metabolism [H]	0.97
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.97
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.97
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.97
COG4403	Lantibiotic modifying enzyme	Defense mechanisms [V]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	83.50 %
Unclassified	root	N/A	16.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	83.50 %
Unclassified	root	N/A	16.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.52 %
Unclassified	root	N/A	16.50 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.97 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.31 %
Unclassified	root	N/A	16.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.94 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.49 %
Unclassified	root	N/A	16.50 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.94 %
Fungi	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi	0.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.01 %
Unclassified	root	N/A	16.50 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %
Dikarya	subkingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	0.97 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	31.07 %
Unclassified	root	N/A	16.50 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.94 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.97 %
Basidiomycota	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota	0.97 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	31.07 %
Unclassified	root	N/A	16.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.97 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.97 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.97 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.97 %
Agaricomycotina	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	31.07 %
Unclassified	root	N/A	16.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.94 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.97 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.97 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.97 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.97 %
Tremellomycetes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Tremellomycetes	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	31.07 %
Unclassified	root	N/A	16.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.94 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.97 %
Tremellales	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Tremellomycetes → Tremellales	0.97 %
Streptomyces thermocarboxydus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermocarboxydus	0.97 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.97 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	31.07 %
Unclassified	root	N/A	16.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.94 %
Trimorphomycetaceae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Tremellomycetes → Tremellales → Trimorphomycetaceae	0.97 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.97 %
Streptomyces thermocarboxydus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermocarboxydus	0.97 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.97 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	31.07 %
Unclassified	root	N/A	16.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.94 %
Saitozyma	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Tremellomycetes → Tremellales → Trimorphomycetaceae → Saitozyma	0.97 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.97 %
Streptomyces thermocarboxydus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermocarboxydus	0.97 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.97 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	31.07 %
Unclassified	root	N/A	16.50 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.94 %
Saitozyma podzolica	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Tremellomycetes → Tremellales → Trimorphomycetaceae → Saitozyma → Saitozyma podzolica	0.97 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.97 %
Streptomyces thermocarboxydus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermocarboxydus	0.97 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.97 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.97 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.97 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908009\|FWIRA_GRAM18402IDYIC	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	504	Open in IMG/M
2189573001\|GZR05M101BSUXY	Not Available	521	Open in IMG/M
3300000956\|JGI10216J12902_107287794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	564	Open in IMG/M
3300000956\|JGI10216J12902_114826759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	790	Open in IMG/M
3300002568\|C688J35102_120313128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	984	Open in IMG/M
3300004063\|Ga0055483_10146191	Not Available	752	Open in IMG/M
3300004156\|Ga0062589_101498895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300004463\|Ga0063356_100691135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1400	Open in IMG/M
3300004479\|Ga0062595_100399817	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300004479\|Ga0062595_101138950	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300004480\|Ga0062592_100230690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1337	Open in IMG/M
3300004799\|Ga0058863_10020101	All Organisms → cellular organisms → Bacteria → Terrabacteria group	565	Open in IMG/M
3300005093\|Ga0062594_101906557	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300005167\|Ga0066672_10839611	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300005328\|Ga0070676_11336298	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005329\|Ga0070683_101754941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	597	Open in IMG/M
3300005332\|Ga0066388_102913969	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300005332\|Ga0066388_107309041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300005344\|Ga0070661_100674581	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300005344\|Ga0070661_100921132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	722	Open in IMG/M
3300005434\|Ga0070709_11786019	Not Available	503	Open in IMG/M
3300005439\|Ga0070711_101361868	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300005467\|Ga0070706_101153557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	713	Open in IMG/M
3300005526\|Ga0073909_10655151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	523	Open in IMG/M
3300005540\|Ga0066697_10669862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	570	Open in IMG/M
3300005540\|Ga0066697_10743576	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300005547\|Ga0070693_100236186	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300005553\|Ga0066695_10081616	All Organisms → cellular organisms → Bacteria	1965	Open in IMG/M
3300005556\|Ga0066707_10097685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1799	Open in IMG/M
3300005568\|Ga0066703_10813288	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300005569\|Ga0066705_10760904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300005576\|Ga0066708_10540617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces thermocarboxydus	751	Open in IMG/M
3300005578\|Ga0068854_101929875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300005614\|Ga0068856_100303253	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300005718\|Ga0068866_10945366	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300005764\|Ga0066903_101477060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1282	Open in IMG/M
3300006028\|Ga0070717_10742899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	892	Open in IMG/M
3300006046\|Ga0066652_100728555	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300006175\|Ga0070712_101020524	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300006800\|Ga0066660_10183673	All Organisms → cellular organisms → Bacteria	1580	Open in IMG/M
3300006954\|Ga0079219_12231410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	528	Open in IMG/M
3300009098\|Ga0105245_12338071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	588	Open in IMG/M
3300009840\|Ga0126313_10447690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1029	Open in IMG/M
3300010140\|Ga0127456_1207747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	631	Open in IMG/M
3300010337\|Ga0134062_10717000	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300010361\|Ga0126378_10459684	All Organisms → cellular organisms → Bacteria	1387	Open in IMG/M
3300010373\|Ga0134128_12074561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300010375\|Ga0105239_10067088	All Organisms → cellular organisms → Bacteria	3941	Open in IMG/M
3300010375\|Ga0105239_13371177	Not Available	520	Open in IMG/M
3300010398\|Ga0126383_12188598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	639	Open in IMG/M
3300010401\|Ga0134121_13257346	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Tremellomycetes → Tremellales → Trimorphomycetaceae → Saitozyma → Saitozyma podzolica	502	Open in IMG/M
3300010999\|Ga0138505_100037237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	679	Open in IMG/M
3300012208\|Ga0137376_10305046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1382	Open in IMG/M
3300012505\|Ga0157339_1042112	Not Available	576	Open in IMG/M
3300012895\|Ga0157309_10181682	Not Available	646	Open in IMG/M
3300012897\|Ga0157285_10020207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1410	Open in IMG/M
3300012908\|Ga0157286_10067096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	970	Open in IMG/M
3300012957\|Ga0164303_11207517	All Organisms → cellular organisms → Bacteria → Terrabacteria group	554	Open in IMG/M
3300012958\|Ga0164299_10142104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1316	Open in IMG/M
3300012976\|Ga0134076_10377856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300012987\|Ga0164307_11697280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	535	Open in IMG/M
3300012989\|Ga0164305_12135135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300013102\|Ga0157371_10314384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1136	Open in IMG/M
3300013296\|Ga0157374_11779554	Not Available	641	Open in IMG/M
3300014325\|Ga0163163_10176426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2184	Open in IMG/M
3300014969\|Ga0157376_11391878	Not Available	733	Open in IMG/M
3300015051\|Ga0137414_1151695	Not Available	6430	Open in IMG/M
3300015356\|Ga0134073_10249774	All Organisms → cellular organisms → Bacteria → Terrabacteria group	612	Open in IMG/M
3300015373\|Ga0132257_103287087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
3300017792\|Ga0163161_12076060	Not Available	505	Open in IMG/M
3300017966\|Ga0187776_11348110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	541	Open in IMG/M
3300018431\|Ga0066655_11341142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	516	Open in IMG/M
3300019362\|Ga0173479_10663920	Not Available	556	Open in IMG/M
3300023077\|Ga0247802_1075806	Not Available	562	Open in IMG/M
3300023077\|Ga0247802_1080207	Not Available	550	Open in IMG/M
3300025910\|Ga0207684_11188123	Not Available	632	Open in IMG/M
3300025910\|Ga0207684_11239997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	616	Open in IMG/M
3300025917\|Ga0207660_11021358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300025928\|Ga0207700_10878124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	802	Open in IMG/M
3300025981\|Ga0207640_10326479	All Organisms → cellular organisms → Bacteria	1224	Open in IMG/M
3300026023\|Ga0207677_10707379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	894	Open in IMG/M
3300026067\|Ga0207678_11876195	All Organisms → cellular organisms → Bacteria → Terrabacteria group	523	Open in IMG/M
3300026523\|Ga0209808_1283244	Not Available	531	Open in IMG/M
3300026524\|Ga0209690_1082464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1351	Open in IMG/M
3300026542\|Ga0209805_1178513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	943	Open in IMG/M
3300027775\|Ga0209177_10492022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300028589\|Ga0247818_11242389	Not Available	533	Open in IMG/M
3300028714\|Ga0307309_10167851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	564	Open in IMG/M
3300028800\|Ga0265338_10046427	All Organisms → cellular organisms → Bacteria	3980	Open in IMG/M
3300028800\|Ga0265338_10487744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	869	Open in IMG/M
3300028814\|Ga0307302_10170994	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300028824\|Ga0307310_10566108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	577	Open in IMG/M
3300028881\|Ga0307277_10134727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1065	Open in IMG/M
3300028884\|Ga0307308_10605624	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031247\|Ga0265340_10457795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300031455\|Ga0307505_10592285	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031544\|Ga0318534_10518171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	680	Open in IMG/M
3300031938\|Ga0308175_102397074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591	Open in IMG/M
3300032002\|Ga0307416_102506223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	614	Open in IMG/M
3300032005\|Ga0307411_10104895	All Organisms → cellular organisms → Bacteria	2008	Open in IMG/M
3300032180\|Ga0307471_103714714	Not Available	540	Open in IMG/M
3300032829\|Ga0335070_11774021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	559	Open in IMG/M
3300034149\|Ga0364929_0348546	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.76%
Host-Associated	Host-Associated	25.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.79%
Plants	Host-Associated → Plants	24.27%
Aquatic	Environmental → Aquatic	0.97%
Human	Host-Associated → Human	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.74%
Marine	Environmental → Aquatic → Marine	0.97%
Floodplain	Environmental → Terrestrial → Floodplain	0.97%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.97%
Digestive System	Host-Associated → Human → Digestive System	0.97%
Roots	Host-Associated → Plants → Roots	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.34%
Loam	Environmental → Terrestrial → Soil → Loam	14.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.97%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.97%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.97%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.97%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.97%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.97%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.97%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.97%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.97%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.97%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.97%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.97%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.97%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908009	Soil microbial communities from sample at FACE Site Metagenome WIR_Amb2	Environmental	Open in IMG/M
2189573001	Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004063	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300023077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S076-202R-6	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099638

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRA_02905220	2124908009	Soil	RSAGFVCGYRDTQAIDSPLEDFMAAGQREVLVRPADLEAARALLEESKS
FD2_01696300	2189573001	Grass Soil	IECGHRDTEAIDSPLEDFMSAGGREILVRESDLEAAKELLAAPEA
JGI10216J12902_1072877942	3300000956	Soil	CGLLQANGIDCAYRDTAAIDSPLEDFIEAGAREILVRPGDLEAARSLLPDAG*
JGI10216J12902_1148267591	3300000956	Soil	RDTEAIDSSLEEFTAAGPREILVHPSDLDAARELLVDSTNE*
C688J35102_1203131283	3300002568	Soil	ETQAVDSLLEEFTPSGPQEVLVHPSDLDAARELLAQSDR*
Ga0055483_101461912	3300004063	Natural And Restored Wetlands	IECGYRDTEALDSPLEDFTASGQREILVHGSDLDGARAVLAQPES*
Ga0062589_1014988952	3300004156	Soil	AYRDTEAIDSPLEDFTAAGAREILVRPADLEAARALLPDPS*
Ga0063356_1006911351	3300004463	Arabidopsis Thaliana Rhizosphere	AGIECGYRETEAVDSLLEEFTPSGPQEILVHPSDLDAARELLAPPTG*
Ga0062595_1003998172	3300004479	Soil	IECAYRDTEAIDSTIEDFIASGPREIVVRASDLDAARELLAAPGDGD*
Ga0062595_1011389503	3300004479	Soil	YRDTEAIDSPIEDFIEAGPREILVQPADLDAARALLDDPAA*
Ga0062592_1002306901	3300004480	Soil	VCGLLRSAGIECCYRHTEAIDSQLEDFTSAAGSQEILVHEKDLETARELVADQS*
Ga0058863_100201012	3300004799	Host-Associated	AGIKCGYRDTEAIDSPLEDFMAAGAQEILVHESDLEAAKELLPQQ*
Ga0062594_1019065571	3300005093	Soil	GLLRSQGIACGYRDTEAIDSPLEDFTAAGAREILVRDADLEAARALLDAPTA*
Ga0066672_108396112	3300005167	Soil	LRSAGIDSFYRDTEEIDSPLEDFTAAGPREIVVRSTDADAARQLLAESTH*
Ga0070676_113362982	3300005328	Miscanthus Rhizosphere	LCGLLRSQGIACGYRDTEAIDSPLEDFTAAGAREILVRDADLEAARALLDAPTA*
Ga0070683_1017549412	3300005329	Corn Rhizosphere	LLRSAGIECGYRETEAIDSSLEEFIASGPREILVHPDDLERARAVLPASNA*
Ga0066388_1029139692	3300005332	Tropical Forest Soil	GIDCAYRDTEAIDSPLEDFIEAGAREILVRPADLEAARSLLPDES*
Ga0066388_1073090412	3300005332	Tropical Forest Soil	IDCAYRDTEAIDSSLEEFTAAGPREILVHPSDLDAARELLVDSTDE*
Ga0070661_1006745813	3300005344	Corn Rhizosphere	CGLLRSAGIDCAYRDTEAIDSPIEDFIEAGPREILVQPADLDAARALLDDPAA*
Ga0070661_1009211321	3300005344	Corn Rhizosphere	GYRDTEAIDSPLEDFAASGPREILVQESDLDDARALLDSAPG*
Ga0070709_117860192	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	IECGYRDTAPIDSTVEDFIAAGPREILVHPDDLERARALLPAS*
Ga0070711_1013618681	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	GIDCAYRDTEAIESSLEEFIAAGPREMLVPAADLDAARELLAGSTG*
Ga0070706_1011535571	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DCAYRDTEAIDSSLEEFTAAGPREILVHASDLEAARELLAASTT*
Ga0073909_106551511	3300005526	Surface Soil	LRSAGLECGYRDTQSIDSPIEDFIAAGPREILVKESDLEVARELLGPSAG*
Ga0066697_106698622	3300005540	Soil	AGIDCFYRDTEAIDSPLEDFTAAGQREIVVRSSDADAARQLLP*
Ga0066697_107435762	3300005540	Soil	YRDTEAIDSPIEDFIEAGPVEVVVPASDLQAARELLAASKD*
Ga0070693_1002361861	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	LRSAGIDCAYRDTEAIDSPIEDFIEAGPREILVQLADLDAARALLDDPAA*
Ga0066695_100816164	3300005553	Soil	VCGLLRSNGIECGYRDTEAIDSPLEDFTAAGQREILVRAADADAARALLEAD*
Ga0066707_100976854	3300005556	Soil	AGIACGYRDTEAIDSPLEDFIAAGPREILVPESDLQAARALLADSVR*
Ga0066703_108132883	3300005568	Soil	CAYRETEAIESSLEDFTAAGPREILVHESDLAAGRELIAPSST*
Ga0066705_107609042	3300005569	Soil	AEVLCGLLQANGIDCGYRDTEAIDSPLEDFTAAGAREVLVRPSDLEAARSLLPDPD*
Ga0066708_105406171	3300005576	Soil	IECGYRDTEAIDSPLEDFTAAGQREILVRAADADAARALLEAD*
Ga0068854_1019298751	3300005578	Corn Rhizosphere	IACGYRDTEAIDSPLEDFAASGPREILVQESDLDDARALLDSAPG*
Ga0068856_1003032533	3300005614	Corn Rhizosphere	SAGIECFYRETEEIDSPLEDFIAAGQREIVVREADADAARELLTAPT*
Ga0068866_109453661	3300005718	Miscanthus Rhizosphere	GIECGYRDTDAVDSRFEEFIASGPREILVHQSDLEAARALLGEADS*
Ga0066903_1014770601	3300005764	Tropical Forest Soil	YRDTEAIDSSLEEFTAAGPREILVHASDLDAARELLVDSTNE*
Ga0070717_107428992	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LLRDGGIECGYRDTAPIDSAVEDFIAAGPREILVHPDDLERARALLPTP*
Ga0066652_1007285551	3300006046	Soil	CAYRDTEAIESALEEFTAAGPREILVRASDLDAARELLAGSAT*
Ga0070712_1010205243	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GLECGYRDTDALDSQLEDFIAAGAREILVHASEIDDARAVLAAAEG*
Ga0066660_101836733	3300006800	Soil	VSRKPTSSAAYYRSAGIDCAYRDTEAIDSSLEDFTAAGPREILVRASDLDAARELLAAPSA*
Ga0079219_122314102	3300006954	Agricultural Soil	YRDTEAIDSPIEDFIASGPREILVSPDDLEDARQLLKDSEQS*
Ga0105245_123380711	3300009098	Miscanthus Rhizosphere	LLRSAGFVCGYRDTQAIDSPLEDFMAAGQREVLVRPADLEAARALLEESKS*
Ga0126313_104476902	3300009840	Serpentine Soil	LRSAGIECGYRETDAIDSTLEDFTPAGPREIYVQPANLEVARELLSSE*
Ga0127456_12077472	3300010140	Grasslands Soil	VCGLLRSAGFECAYRDTEAIDSQLEDFIAAGSREVLVHAADLEAAKELLAAPAAED*
Ga0134062_107170002	3300010337	Grasslands Soil	RSNGIDCAYRETEAIESSLEDFTAAGPREILVHESDLAAGRELIAPSST*
Ga0126378_104596843	3300010361	Tropical Forest Soil	CGLLRSAGIECGHRDTDAIDSPLEDFMAAGAQEILVRESDLEAAQELLAAPEV*
Ga0134128_120745612	3300010373	Terrestrial Soil	LESAGIECAYRDTDAIESSLEEFTASGPREILVHPTDLDAAKQLVGNATAG*
Ga0105239_100670886	3300010375	Corn Rhizosphere	LRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPGTG*
Ga0105239_133711772	3300010375	Corn Rhizosphere	GLLRSAGFECGYRDTEAIDSPLEDFTAAGQREILVHAPDLEAARALLEDAERSAT*
Ga0126383_121885981	3300010398	Tropical Forest Soil	ILCGLLQANGIECAYRDTEAIDSPLEDFTAAGAREILVRPADLEAARALLPGSA*
Ga0134121_132573462	3300010401	Terrestrial Soil	GIECGYRDTEAIDSQLEDFTAAGPREILVHAPDLEAARALLDEAE*
Ga0138505_1000372371	3300010999	Soil	LRSAGIECAYRDTQAIDSPLEDFIASGPREILVREADAQAARALLDASPG*
Ga0137376_103050461	3300012208	Vadose Zone Soil	IDCAYRDTEAIDSPLEEFTAAGPREILVRASDLNAARELLADSRPDAGEGVN*
Ga0157339_10421121	3300012505	Arabidopsis Rhizosphere	GIECAYRDTEAIDSPIEDFIASGPREIVVRASDLEAARELLRADG*
Ga0157309_101816821	3300012895	Soil	HRETDAIDSPVEDFIPGGPREVMVYERDLEAARTLLPEP*
Ga0157285_100202073	3300012897	Soil	NGIECGYRDTDAIDSPLEDFMTSGPREILVHEADLETARALLPA*
Ga0157286_100670963	3300012908	Soil	AYRDTEAIDSPIEDFIAAGPREVLVHEVDLEAARALLPDS*
Ga0164303_112075171	3300012957	Soil	LRSEGIECAYRDTEKIDSSLEDFIAAGSREILVYEKDLAAAKELLAAT*
Ga0164299_101421041	3300012958	Soil	RSAGIECAHRDTDAIDSPLEDFIAAGAQEILVHASDLEAAKELLEAT*
Ga0134076_103778561	3300012976	Grasslands Soil	GIECGYRDTEAIDSTIEDFIAAGAREILVREADLETARELLAPVE*
Ga0164307_116972801	3300012987	Soil	YRDTPAIDSPLEDFMTAGPREILVRPADLQAARALLEDSAQ*
Ga0164305_121351352	3300012989	Soil	SNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPDTG*
Ga0157371_103143841	3300013102	Corn Rhizosphere	NGIECAYRDTEAIDSPMEDFIAAGPREVLVHEVDLEAARALLPDS*
Ga0157374_117795542	3300013296	Miscanthus Rhizosphere	LRSSGIECGYRDTSAIDSPLEDFMAAGQREILVHAADLEAARALVDDAVS*
Ga0163163_101764265	3300014325	Switchgrass Rhizosphere	RDTEAIDLSLEEFTAAGPREILVHSSDLEAARELLAADSSVDN*
Ga0157376_113918781	3300014969	Miscanthus Rhizosphere	RDTDVIDDPYEDFAASGPREIVVHAADADAARELLADTGD*
Ga0137414_11516958	3300015051	Vadose Zone Soil	LRFRDTEAIDSPLEDFTAAGPREILVQETDMDAARALLDDSAD*
Ga0134073_102497742	3300015356	Grasslands Soil	LRSAGIECAHRDTDAIDSPLEDFMAAGSQEVLVHDSDLESAKELLPEQ*
Ga0132257_1032870871	3300015373	Arabidopsis Rhizosphere	RSAGIECAYRDTQAIDSPLEDFTAAGPREIVVRAADLEAAKALLPRSPR*
Ga0163161_120760601	3300017792	Switchgrass Rhizosphere	GIECAYRDTDAIDSPIEEFIASGPREVLVHEKDLEAARTLLPES
Ga0187776_113481101	3300017966	Tropical Peatland	RSAGLECGYRDTEALDSPLEQLTAAGPREILVHEPDLAAARALVEAQT
Ga0066655_113411421	3300018431	Grasslands Soil	DGIDCTYRETEAIESPLEDFTAAGPREILVPEADVEAARALLPGSAS
Ga0173479_106639202	3300019362	Soil	GIECAYRDTEAIDSPMEDFIAAGPREVLVHEVDLEAARALLPDS
Ga0247802_10758061	3300023077	Soil	ANGIECAYRDTEAIDSPMEDFIAAGPREVLVHEVDLEAARALLPDS
Ga0247802_10802073	3300023077	Soil	IECGYRDTDAIDSPLEDFMTSGPREILVHEADLETARALLPA
Ga0207684_111881232	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	DCAYRDTEAIDSSLEEFTAAGPREILVHASDLEAARELLAASTT
Ga0207684_112399972	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SAGIDCAYRDTEAIESPIEDFIAAGPREILVRESDVDAARALLAESAS
Ga0207660_110213582	3300025917	Corn Rhizosphere	CGLLRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMARALLEESSDTG
Ga0207700_108781241	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ASEAEVVCGLLRSAGIECAYRETEAIDSPLEDFIAAGSQEILVHEVELEAAKELLAAQQS
Ga0207640_103264791	3300025981	Corn Rhizosphere	IACGYRDTEAIDSPLEDFAASGPREILVQESDLDDARALLDSAPG
Ga0207677_107073793	3300026023	Miscanthus Rhizosphere	LRSNGIDCGYRDTDAIDSPLEDFQSAGQREILVRPADVEMARALLEESSDTG
Ga0207678_118761952	3300026067	Corn Rhizosphere	CAYRDTSAIDSSLEEFTAAGPREILVAPADLDAAHALLEDAKS
Ga0209808_12832442	3300026523	Soil	IECGYRDTEAIDSPLEDFTAAGQREILVRAADADAARALLEAD
Ga0209690_10824641	3300026524	Soil	AGIDCAYRDTEAIESSLEDFTAAGPREILVRASDLDAAKELLADSS
Ga0209805_11785133	3300026542	Soil	DCAYRDTEAIDSPLEDFTAAGPREILVREPDLQAARALLADAAR
Ga0209177_104920221	3300027775	Agricultural Soil	YRDTEAIDSPIEDFIASGPREILVSPDDLEDARQLLKDSEQS
Ga0247818_112423891	3300028589	Soil	RANGIECGYRDTDAIDSPLEDFMTSGPREILVHEADLETARALLPA
Ga0307309_101678511	3300028714	Soil	AGIECAYRDTQAIDSPIEDFIAAGPREILVREADVEAAQALLEASPG
Ga0265338_100464276	3300028800	Rhizosphere	LRNAGIACGYRDTEATDSPLEDFIASGPREILVHSDDLEAARSVLTAREA
Ga0265338_104877441	3300028800	Rhizosphere	GLLRANGIDCSYRETDEIDSPLEEFTAAGFREILVRPTDLEAARALLPDASD
Ga0307302_101709941	3300028814	Soil	GLLRSAGIECGYRETDAIDSTLEDFSADGPREIHVHPSDLEVARALLGDAES
Ga0307310_105661081	3300028824	Soil	GYRDTDAIDSPLEDFQSAGQREILVRPADVEMAKALLEESSPNAG
Ga0307277_101347271	3300028881	Soil	ECGYRDTEAIESSLEEFTAAGPREILVRAADVEAARELLAASTS
Ga0307308_106056241	3300028884	Soil	DCAYRDTEVIDSPLEDFIASGPREILVRDSDLEAAKELLADSAG
Ga0265340_104577951	3300031247	Rhizosphere	RANGIDCAYRDTEEIDSPLEGFTEAGLREILVKPADLESARALLPAD
Ga0307505_105922852	3300031455	Soil	RSNGIECGYRDTEQIESSLEDFTASGPREIFVRPSDLEAAQALLGEGQG
Ga0318534_105181712	3300031544	Soil	IKCGHRDTEAIDSQLEDFIAAGPREILVHPDDLEDAKSVLAARDA
Ga0308175_1023970742	3300031938	Soil	RSAGIDCAYRDTEAIDSPLEDFIAAGPREILVQPGDVDAARALLDDSAA
Ga0307416_1025062232	3300032002	Rhizosphere	LRSAGIECAYRDTDAIDSPLEDFTAAGPREIVVRAADLEAAKALLARSTG
Ga0307411_101048951	3300032005	Rhizosphere	GIECGYRDTDATDSALEDFMTSGPREILVHEADLETARALLPES
Ga0307471_1037147141	3300032180	Hardwood Forest Soil	LRSAGIECGYRDTEAIDSQLEDFTAAGPREILVHAKDLETARALLVEEAL
Ga0335070_117740211	3300032829	Soil	GIRCAYRDTAAIDSPLEDFTAAGPREILVHTDDLDAARELLGVAG
Ga0364929_0348546_3_143	3300034149	Sediment	GIECGYRETDAIDSTLEDFSADGPREIHVHPSDLEDARALLGEAEG

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign