Metagenome Family F099620

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099620
Family Type	Metagenome
Number of Sequences	103
Average Sequence Length	74 residues
Representative Sequence	FKTANVIAVFMREKHAIELLRRDTALLQAQHQLSRAQPAIDENLAMIGRDQRAVPRAPAAEHGQAEHGS
Number of Associated Samples	95
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.98 %
% of genes near scaffold ends (potentially truncated)	94.17 %
% of genes from short scaffolds (< 2000 bps)	84.47 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.058 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (22.330 % of family members)
Environment Ontology (ENVO)	Unclassified (33.981 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.369 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 53.61% β-sheet: 0.00% Coil/Unstructured: 46.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF00359	PTS_EIIA_2	8.74
PF01578	Cytochrom_C_asm	7.77
PF01336	tRNA_anti-codon	1.94
PF03819	MazG	1.94
PF03639	Glyco_hydro_81	0.97
PF00753	Lactamase_B	0.97
PF02517	Rce1-like	0.97
PF00144	Beta-lactamase	0.97
PF10028	DUF2270	0.97
PF01915	Glyco_hydro_3_C	0.97
PF00656	Peptidase_C14	0.97
PF16576	HlyD_D23	0.97

COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.97
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	0.97
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.97
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.97
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.97
COG4249	Uncharacterized conserved protein, contains caspase domain	General function prediction only [R]	0.97
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.97
COG5498	Endoglucanase Acf2	Carbohydrate transport and metabolism [G]	0.97

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.06 %
Unclassified	root	N/A	1.94 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	78.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.91 %
Unclassified	root	N/A	1.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	78.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.91 %
Unclassified	root	N/A	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	39.81 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.91 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.94 %
Unclassified	root	N/A	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	39.81 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2.91 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.94 %
Unclassified	root	N/A	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	39.81 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	2.91 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1.94 %
Unclassified	root	N/A	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	39.81 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	2.91 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	1.94 %
Unclassified	root	N/A	1.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	39.81 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	2.91 %
Unclassified	root	N/A	1.94 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	0.97 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.97 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16787186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1185	Open in IMG/M
3300000956\|JGI10216J12902_117792983	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300004156\|Ga0062589_100530710	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1001	Open in IMG/M
3300004479\|Ga0062595_100770076	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	787	Open in IMG/M
3300005166\|Ga0066674_10371314	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	669	Open in IMG/M
3300005171\|Ga0066677_10298138	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300005289\|Ga0065704_10553927	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300005294\|Ga0065705_10163995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1756	Open in IMG/M
3300005295\|Ga0065707_10534779	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	732	Open in IMG/M
3300005347\|Ga0070668_101820930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300005354\|Ga0070675_101430210	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300005436\|Ga0070713_100850526	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	876	Open in IMG/M
3300005440\|Ga0070705_101261723	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300005446\|Ga0066686_10279668	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1131	Open in IMG/M
3300005447\|Ga0066689_10789555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	591	Open in IMG/M
3300005576\|Ga0066708_10033828	All Organisms → cellular organisms → Bacteria	2753	Open in IMG/M
3300005576\|Ga0066708_10499273	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300005586\|Ga0066691_10645737	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	628	Open in IMG/M
3300005615\|Ga0070702_100886771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	697	Open in IMG/M
3300005764\|Ga0066903_100429048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2194	Open in IMG/M
3300006032\|Ga0066696_10045827	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2427	Open in IMG/M
3300006032\|Ga0066696_10302419	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1039	Open in IMG/M
3300006034\|Ga0066656_10992441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	539	Open in IMG/M
3300006175\|Ga0070712_101810702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	535	Open in IMG/M
3300006794\|Ga0066658_10240904	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300007255\|Ga0099791_10645648	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	519	Open in IMG/M
3300007258\|Ga0099793_10225427	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	902	Open in IMG/M
3300009012\|Ga0066710_104140643	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	542	Open in IMG/M
3300009038\|Ga0099829_10834499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	765	Open in IMG/M
3300009137\|Ga0066709_101846743	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300010329\|Ga0134111_10227140	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	761	Open in IMG/M
3300010333\|Ga0134080_10570195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	547	Open in IMG/M
3300010333\|Ga0134080_10618813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	529	Open in IMG/M
3300010358\|Ga0126370_10655223	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	915	Open in IMG/M
3300010371\|Ga0134125_10131117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	2791	Open in IMG/M
3300010373\|Ga0134128_11098526	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	878	Open in IMG/M
3300010397\|Ga0134124_11317584	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	746	Open in IMG/M
3300012199\|Ga0137383_11207595	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	543	Open in IMG/M
3300012201\|Ga0137365_10073908	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2571	Open in IMG/M
3300012202\|Ga0137363_11082119	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	681	Open in IMG/M
3300012202\|Ga0137363_11312665	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	612	Open in IMG/M
3300012208\|Ga0137376_11752339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	512	Open in IMG/M
3300012209\|Ga0137379_10833550	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	827	Open in IMG/M
3300012285\|Ga0137370_10002973	All Organisms → cellular organisms → Bacteria	7413	Open in IMG/M
3300012349\|Ga0137387_10073893	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2330	Open in IMG/M
3300012350\|Ga0137372_10141006	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1978	Open in IMG/M
3300012355\|Ga0137369_10338614	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300012358\|Ga0137368_10040377	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	4082	Open in IMG/M
3300012359\|Ga0137385_10737642	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	821	Open in IMG/M
3300012683\|Ga0137398_10573846	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	779	Open in IMG/M
3300012925\|Ga0137419_11179059	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	640	Open in IMG/M
3300012930\|Ga0137407_11117125	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	747	Open in IMG/M
3300012971\|Ga0126369_13629057	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	506	Open in IMG/M
3300012989\|Ga0164305_11434724	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	609	Open in IMG/M
3300014154\|Ga0134075_10052476	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1686	Open in IMG/M
3300015077\|Ga0173483_10707155	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	569	Open in IMG/M
3300015241\|Ga0137418_10140811	All Organisms → cellular organisms → Bacteria	2133	Open in IMG/M
3300015241\|Ga0137418_10265579	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1449	Open in IMG/M
3300015241\|Ga0137418_11026052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	594	Open in IMG/M
3300015371\|Ga0132258_11228348	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1894	Open in IMG/M
3300016371\|Ga0182034_10442262	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1075	Open in IMG/M
3300017792\|Ga0163161_10931211	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738	Open in IMG/M
3300018028\|Ga0184608_10002513	All Organisms → cellular organisms → Bacteria	5596	Open in IMG/M
3300018076\|Ga0184609_10301778	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	749	Open in IMG/M
3300018433\|Ga0066667_10591004	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	925	Open in IMG/M
3300018482\|Ga0066669_10222864	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300019878\|Ga0193715_1083226	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	662	Open in IMG/M
3300019879\|Ga0193723_1051193	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1214	Open in IMG/M
3300019881\|Ga0193707_1201083	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300021078\|Ga0210381_10254317	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	625	Open in IMG/M
3300021344\|Ga0193719_10101178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1253	Open in IMG/M
3300021418\|Ga0193695_1046195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	945	Open in IMG/M
3300022534\|Ga0224452_1128307	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	780	Open in IMG/M
3300023072\|Ga0247799_1078460	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	576	Open in IMG/M
3300025926\|Ga0207659_10863347	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
3300026308\|Ga0209265_1222558	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300026310\|Ga0209239_1318809	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	539	Open in IMG/M
3300026324\|Ga0209470_1061705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1769	Open in IMG/M
3300026324\|Ga0209470_1375854	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	508	Open in IMG/M
3300026326\|Ga0209801_1117127	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1143	Open in IMG/M
3300026326\|Ga0209801_1247626	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	678	Open in IMG/M
3300026327\|Ga0209266_1274197	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	533	Open in IMG/M
3300026332\|Ga0209803_1209771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	703	Open in IMG/M
3300026334\|Ga0209377_1060551	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1659	Open in IMG/M
3300026355\|Ga0257149_1071897	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	508	Open in IMG/M
3300026490\|Ga0257153_1124010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	506	Open in IMG/M
3300026523\|Ga0209808_1032430	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2503	Open in IMG/M
3300026528\|Ga0209378_1022148	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3515	Open in IMG/M
3300026537\|Ga0209157_1313302	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	571	Open in IMG/M
3300026557\|Ga0179587_10074402	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300027903\|Ga0209488_10982796	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	586	Open in IMG/M
3300028380\|Ga0268265_10995410	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300028784\|Ga0307282_10194177	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300028787\|Ga0307323_10181940	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	759	Open in IMG/M
3300028791\|Ga0307290_10251732	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	647	Open in IMG/M
3300028819\|Ga0307296_10426160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	725	Open in IMG/M
3300028824\|Ga0307310_10022930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2464	Open in IMG/M
3300028878\|Ga0307278_10132046	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1120	Open in IMG/M
3300031057\|Ga0170834_107166192	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300031890\|Ga0306925_12125046	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	525	Open in IMG/M
3300033412\|Ga0310810_11257015	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	590	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.20%
Host-Associated	Host-Associated	6.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.32%
Plants	Host-Associated → Plants	6.80%
Aquatic	Environmental → Aquatic	3.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.32%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.88%
Sediment	Environmental → Aquatic → Sediment	2.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.91%
Freshwater	Environmental → Aquatic → Freshwater	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.50%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.97%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.88%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.94%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.97%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.97%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.97%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.97%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019878	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019881	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3c2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021418	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02983560	2088090014	Soil	VFVREKDAIELFRRHAALLEAQHQLPRAQPAVDKNFAMIRCEQRAISRAPAAKHGQAEHG
JGI10216J12902_1177929831	3300000956	Soil	IKFAAENFKTADVVAVFVGEEDAVELLRCDAALLQTQHQLPRAQPAIDKNFAVIGCNQRAVSRAPAAEHGQVEHGA*
Ga0062589_1005307102	3300004156	Soil	NFKTADVITVFVRENHAVELLWCDATLLQTQHDLSRAQPAINENFAMLGGDQRAISRAPAAEHNQAEHGS*
Ga0062595_1007700762	3300004479	Soil	AINRHIKFPAKNFKTADVIAVFVREKDAIKPLGHDAALLQTQHQLPRAQPAIDKNLAMIRCNQGAVPRASAAEHGQAEHGI*
Ga0066674_103713141	3300005166	Soil	INRHVKLSAQDFEPADVITVFVSKKDAVKLLRCDAATCQAQDQLARTQAAIDKNLAMLGRDQCAVSRAAAAEHGQAEHGS*
Ga0066677_102981382	3300005171	Soil	FKATDMVGMFVREKNAVELLGRDAALLQAQHQLPRAQPAIYQNLAMISRDQRAVPRAPAAEHGQAEHGSQDSRVIAVHAN*
Ga0065704_105539272	3300005289	Switchgrass Rhizosphere	IKFPAKNFESTDVVAVFVREEDSIELLRHDAAVLQAQHQLPRAQSAIDKNFAVISRDQRAVSRAPATKHGQAEHGTYVSRVASACANGNE*
Ga0065705_101639953	3300005294	Switchgrass Rhizosphere	NCLGRERIAINRQIKFAAENFKSANVIAMFVREKHAIQMIGRDAALRQTQYQLPRTQSAIDKNLAMIGCNQCAVSRAAAAEHGQAEHGS*
Ga0065707_105347791	3300005295	Switchgrass Rhizosphere	MSEKDAVELFRHDAAMLQTQHQLPRAQTAIDKNLAMIGCDQRTISRAPAAEYGQAEHGS*
Ga0070668_1018209301	3300005347	Switchgrass Rhizosphere	SANVIAMLVREKHAIELIGRDAALGQTQYQLPRAQAAIDKNLAMTGCDQGAVSRAAAAEHGQAEHGS*
Ga0070675_1014302102	3300005354	Miscanthus Rhizosphere	ENFKPADVVRVFVSQKHAIKLLRRNTALLEAQNQLSRAQPAIDQNLAMIGGDEGAVSRAAAAEHGQAEHGS*
Ga0070713_1008505262	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KTADVITVFVRENHAVELLWCDATLLQTQHDLSRAQPAINENFAMLGGDQRAISRAPAAEHNQAEHGS*
Ga0070705_1012617231	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	DAALFQTQHQLPRAQPAIDKNLAMIRCDQGAVSRAPAAEHGQAEHGTYVSCVGSACANGNDKI*
Ga0066686_102796681	3300005446	Soil	VAINRHVKFAAENFETANVIAVLVREQDAIELLRRNAAMIETQRQLSRAQAAIDQKLAMIGRDQRTVSRAPAPEHRQAEHGS*
Ga0066689_107895551	3300005447	Soil	RQRVAINRHVKFAAENFKSANVIAMFVSEKDAIDLARRDATLRQTQHQLPRAQPTIDKNLAMIGRHKCAISRAPAAEHGQAEHGS*
Ga0066708_100338281	3300005576	Soil	FSAKHFKSADVVGVFMSEKHAIKLFRRDAALRQTQHQLSRAQAAIDKNPAMIRGDQCAVARAAAAEHRQAEHGF*
Ga0066708_104992732	3300005576	Soil	FSAENFESADVIAVLVCQKDAIKLLWRDAAEFKAQHQLSRAESAVDENLAMISRDQRAVPRAPAAEHSQAEHGSQDRRVISAYAN*
Ga0066691_106457372	3300005586	Soil	AEHFKTANVIAMFVREKHAIQLIGRDAALGQTQYQLPRAQTAIDKNLAMIRCDQRTVSRAAAAEHRQAEHGS*
Ga0070702_1008867712	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	TADVITVFVRENHAVELLWCDATLLQTQHDLSRAQPAINENFAMLGGDQRAISRAPAAEHNQAEHGS*
Ga0066903_1004290481	3300005764	Tropical Forest Soil	VAGTHSFRRQRIAINRHVKFPAKNFKTVNMIAVFVCKKDAIELLRHYAALLQTQYQLPRTQPAINENFGVIRRDQRAVPRAPATKHGESEHGS*
Ga0066696_100458272	3300006032	Soil	MLVRKKDAIELLRHDATFLQTQNQLPRAQSAIDKNLAVIRRDQRAVSRAPAAEHGQAEHGTYVSCVGSACANGNE*
Ga0066696_103024192	3300006032	Soil	FEPADVITVFVSKKDAVKLLRCDAALCQAQDQLARTQAAIDKNLAMLGRDQCAVSRAAAAEHGQAEHGS*
Ga0066656_109924412	3300006034	Soil	KFAAENFKSADMIGVFVREKDAVELLRRHPALLQAQHQLPRAQPAIDKNFAMIGRDQRAVSRAPAAEHGQAEHGS*
Ga0070712_1018107021	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	FVAENFKTADVISVFVRENNAVELLRGNAALLQAQHHLPRAQTAIDENLAVIGCDQRAVPRAPATKHGQAEHGS*
Ga0066658_102409042	3300006794	Soil	QIESAAEHFKATDMVGMFVREKNAVELLGRDAALLQAQHQLPRAQPAIYQNLAMISRDQRAVPRAPAAEHGQAEHGSQDSRVIAVHAN*
Ga0099791_106456481	3300007255	Vadose Zone Soil	KNFESTDVVAVFVGKKDAIELLRHDVALLHTQYQLPRAQPAIDKNLAVIGCDERAVSRAPAAEHGQAEHGF*
Ga0099793_102254271	3300007258	Vadose Zone Soil	VIAMFVREKHAIQLFGRDAAVGQTQYQLPRAQAAIDKNLAMIRGDQRTVSRAAAAEHRQAEHGS*
Ga0066710_1041406432	3300009012	Grasslands Soil	REPIAVNRQIEFTAENFQSANMIGVFVREKDAVQLLRRHPALLQAQHQLPRAQSAIDKNFAMIGCDQGAVSRTPAAEHGQAEHGS
Ga0099829_108344992	3300009038	Vadose Zone Soil	SAQDFEPADVITVFVSKKDAIELLRQDTAFRQAQHQLSRAQPAIDQDLAMLGRDQRAVPRAPAAEHGQAEHGT*
Ga0066709_1018467432	3300009137	Grasslands Soil	PAKNFESTNVVAVFVRKKDAIELLGRNAALLQTQHQLPRAQSAIDKNLAVIRRDERAVSRAPAAEHGQAEHGF*
Ga0134067_104278422	3300010321	Grasslands Soil	EFSAENFESADVIAVLVGQKDAIKLLWRDAADSKAQHQLSRAESTVDENLAMISRDQRAVSRAPAAEHSQAEHGSQDRRVISAYAN*
Ga0134111_102271401	3300010329	Grasslands Soil	EFSAENFKSADVITVLMCEKDAIQLLRRHPTLCQTQHQLSRAQAAIDKNPAMIRGDQCAVARAAAAEHRQAEHGF*
Ga0134080_105701951	3300010333	Grasslands Soil	FESTDVVAVFVRKKDSIELLRHDAALRQTQYQLPRAQSAIDKHLAMTACDQGAVSRAAAAEHGQAEHGS*
Ga0134080_106188131	3300010333	Grasslands Soil	VAVFVRKKDAIELLGRNAALLQTQHQLPCAQSAIDKNLAVIRRDERAVSRAPAAEHGQAEHGF*
Ga0126370_106552231	3300010358	Tropical Forest Soil	GVFRRVNNAVKLLRRYATLLQTQHDLPRAETAINQNLAMIGRDKRAVSRAPAAEHGQAEHGSKVIRVI*
Ga0134125_101311171	3300010371	Terrestrial Soil	VIAVFVRKKDAIELLRHDAALFQTQYQLPRAQPAIDQNLAVMRRDERAVSRAPATKHGQAEHGS*
Ga0134128_110985262	3300010373	Terrestrial Soil	DIKFPAKNFESTDVVAVFVCKKHAIELFRHDAALLQTQYQLPRAQSTIDKYLAVICRDERAVSRAPAAEHGQAEHGI*
Ga0134124_113175842	3300010397	Terrestrial Soil	FKTADVICVFMCENNAVELFRCDAALLETQNDLPRAQTAINENLAVRGGNQGTVSRAPATEHGQAEHGS*
Ga0137383_112075952	3300012199	Vadose Zone Soil	SAENFESADVIAVLVCQKDAIKLLWRDAAESKAQHQLSRAESAVDENLAMISRDQRAVPRAPAAEHSQAEHGSQDRRVISAYAN*
Ga0137365_100739083	3300012201	Vadose Zone Soil	RVAINRHIEFAAENFKSTDMIAMFVREKDAIELLRRDTAMLQTQDQLPRAQPAIDKNLAMISCDQRAVSRAPAAEHRQAEHGS*
Ga0137363_110821191	3300012202	Vadose Zone Soil	VITVFVCEEDAIKLLRRDAAVLQTLYQLARAQPAIDENLAVIGCDQRAVSRAPAAEHG*
Ga0137363_113126652	3300012202	Vadose Zone Soil	ANRFCGKRIAINRHVKLSAQDFEPADVITVFVSKKDAIELLRQDTAFRQAQHQLSRAQPAIDQKLAMIGCDQRAVSRAPAAEHRQAEHGS*
Ga0137376_117523391	3300012208	Vadose Zone Soil	NRHIKFAAEHFKSANVIAMLVSEKHAIQLIGRDAALGQTQYQLPRAQAAIDKNLAMIRGDQRTVSRAAAAEHRQAEHGS*
Ga0137379_108335501	3300012209	Vadose Zone Soil	CFCRQRIAINWHIKFAAENFKAADVIAVFVREKNAIKLLRCDAAVLQTQYQLPRAQPAIDENLAMIGRDKGAVPRAPAAEHGQAEHGS*
Ga0137370_100029731	3300012285	Vadose Zone Soil	KTADVIAVLVRKKDAIELFWHDAALLEAQCELPRAQSAIDKNFAMIGCDERAVSRAPAAKHGQAEHGS*
Ga0137387_100738933	3300012349	Vadose Zone Soil	KTANVIAVFVREKHAVKLLRRHPALLQAQHQLPRAQPAIDKNFAMIGCDQGAVSRASAAEHGQAEHGS*
Ga0137372_101410063	3300012350	Vadose Zone Soil	EKDAVELFRHDAAMLQTQHQLPRAQTAIDKNLAMIGCDQRTISRAPAAEYGQAEHGS*
Ga0137369_103386142	3300012355	Vadose Zone Soil	IAVFVRKKDAVELLRHDAALLQTQNQLPRAQPAIDKNFAVIGCDERTVSRAPAAEHGQAEHGF*
Ga0137368_100403771	3300012358	Vadose Zone Soil	IKFAAEHFETANVIAMFVSEKHAIQLIGCDAALGQTQYQLPRAQAAIDKNLAMIRGDQRTVPGAAAAEHGQAEHGS*
Ga0137385_107376421	3300012359	Vadose Zone Soil	ENFKSTDVIAVFVRQKHAIELLGHHTAALQAQHQLPRAQSAIDKKLAVITCDQRAVPRAPAAEHGQAEHWS*
Ga0137398_105738462	3300012683	Vadose Zone Soil	VIAVLVREQHTIELFRGHAALFEAPHELPRAQAAVDQNPAMIGGDERAISRAPAAEHGQAEHVA*
Ga0137419_111790592	3300012925	Vadose Zone Soil	VAVFVGKEDAVELLRHNAALLQTQYQLPRAQSAIDKNLAVMRRDERTVSRAPAAEHGQAEHGF*
Ga0137407_111171252	3300012930	Vadose Zone Soil	WAVVANRFRRQSIAINRHIKLAAENFKSADVIGMFMREKDAIELLGRDTALLQAQDQLPRAQPCIDKNLAMIGCDERTVSRAPAAEDGQAEHGS*
Ga0126369_136290572	3300012971	Tropical Forest Soil	KFAAENFKSADVVAVFVRENNTVELLRHHAALFQTQHQLPCAQPAIDKNFAVIRRDQRAVSRAPAAEQCQAEHGI*
Ga0164305_114347241	3300012989	Soil	KFAAENFETANVIAVLVREQNAIELLRRNAAMLQTQRQLSRAEAPIDQKLAMTGRDQRAVSRAPAPEHRQAEHGS*
Ga0134075_100524761	3300014154	Grasslands Soil	NFETANVIAVLVREQDAIELLRRNAAMLETQRQLSRAQPAIDKNLAMIGCDQCAVSRAPAPEHRQAEHGS*
Ga0173483_107071551	3300015077	Soil	ANVIAMFVSEKHAIQLIGRDAALGQTQYQLPRAQAAIDKNLAMIRGDQRTVSRAAAAEHRQAEHGS*
Ga0137418_101408111	3300015241	Vadose Zone Soil	WDVKFPAKNFESTNVIAVFVRKKYAIELLRHDAALLQTQYQLPRAQSAIDKNLAVMRRDERTVSRAPAAEHGQAEHGF*
Ga0137418_102655792	3300015241	Vadose Zone Soil	RSERIAINRHIKFAAEHFKTANVISMFVSEKHAIQLIGRDATLGQTQYQLPRAQAAIDKNLAMIRGDQRTVPRAAAAEHRQAEHGS*
Ga0137418_110260522	3300015241	Vadose Zone Soil	VIAMFMGKEHAIESFGSKVALLEADDDLTRAQSAIDKNLAVISRDQRAVSRAPAAEHGQAEHGS*
Ga0132258_112283481	3300015371	Arabidopsis Rhizosphere	VFMGEKDAIEPLGHDAALLQTQHQLPRAQPAIDKNLAMIRCNQGAVPRASAAEHGQAEHGI*
Ga0182041_109301112	3300016294	Soil	FKTADVIGVFMRQNNAVELLWRDAALLQAQKHLPCAQTAINENLAMIRGDQCAVSRAPAAEHGQAEHGSKVIRVI
Ga0182034_104422622	3300016371	Soil	ATPFQNAAATERLGGEPIAINRQIKFAAENLKSADMIGVFVREKHAIEPLRDYAALLKTQRQLPRAQPAIDEDLAMIGRDQCAVPRAPAAKHGQAEHGS
Ga0163161_109312111	3300017792	Switchgrass Rhizosphere	VFVCKKHAIELFRHDAALLQTQYQLPRAQSTIDKYLAVICRDERAVSRAPAAEHGQAEHG
Ga0184608_100025133	3300018028	Groundwater Sediment	TTNRLRSERIAINRHIKFAAEHFKTANVIAMFVGEKHAIQLIGRDATLGQTQYQLPRAEAAIDKNLAMIRGDQRTVSRAAAAEHRQTEHGS
Ga0184609_103017782	3300018076	Groundwater Sediment	AENFKSANVIAMFVSEKHAVELIGRDAALGQTQYQLPRAQSAIDKNLAMTGCDQGAVSRAAAAEHGQAEHGS
Ga0066667_105910041	3300018433	Grasslands Soil	LAAEHFKTANVIAMFVREKHAIQLIGRDAALGQTQYQLPRAQTAIDKNLAMIRCDQRTVSRAAAAEHRQAEHGS
Ga0066669_102228642	3300018482	Grasslands Soil	STDVVAVFVRKKDAIELLRHDAALLQTQYQLPRAQSAIDKNLAVIRRDERTVSRAPAAEHGQAEHGF
Ga0193715_10832261	3300019878	Soil	FKTANVIAVFMREKHAIELLRRDTALLQAQHQLSRAQPAIDENLAMIGRDQRAVPRAPAAEHGQAEHGS
Ga0193723_10511931	3300019879	Soil	AIKLLGRDTALGQTQYQLPRAQAAIDKNLAMTGCDQGAVSRAPAAEHGQAEHGS
Ga0193707_12010833	3300019881	Soil	DAIKLLRRDAALLQTQYQLARAQPAIDENLAVIGCDQRAVSRASAAEHG
Ga0210381_102543172	3300021078	Groundwater Sediment	LAAENFESADVIAVFVREKNAIELLRRNAALLQTQYQLPRAQSTIDKYLAVICRDERAVSRAPAAEHGQAEHGI
Ga0193719_101011781	3300021344	Soil	VITVFVCEEDAIKLLRRDAALLQTQYQLARAQPAIDENLAVIGCDQRAVSRASAAEHG
Ga0193695_10461951	3300021418	Soil	DRDIKFPAKNFESADVIAVFVRKKDAIELLRHDAALFQTQYQLPRAQPAIDQNLAVMRRDERAVSRAPATKHGQAEHGT
Ga0224452_11283071	3300022534	Groundwater Sediment	YVIAMFVRQKHAIQLIWRDAALGQTQYQLPRAQSAIDKNLAMTGCDQGTISRAPAAEHGQAEHGS
Ga0247799_10784602	3300023072	Soil	HAIELFRHDAALLQTQYQLPRAQSTIDKYLAVICRDERAVSRAPAAEHGQAEHGI
Ga0207659_108633472	3300025926	Miscanthus Rhizosphere	RHVKFSTENFKPADVVRVFVSQKHAIKLLRRNTALLEAQNQLSRAQPAIDQNLAMIGGDEGAVSRAAAAEHGQAEHGS
Ga0209265_12225582	3300026308	Soil	NFKSADVIGVFMREKHPIKLFRRDAAFCQAQNQLSRTQPAIDKNLAMIGRDQRAVSPAAAAEHGQAEHGSQVNRATSAYANGNE
Ga0209239_13188091	3300026310	Grasslands Soil	YIKLAAENIKSANVITVFVCEQDAIELLRHYAAPLQTQHQLSRAQPAIDKKFAMIGCDQRAVSRAPAAEHGQAEHGS
Ga0209470_10617051	3300026324	Soil	QIEFTAENFKSADMIGVFVREKDAVELLRRHPALLQAQHQLPRAQPAIDKNFAMIGRDQRAVSRAPAAEHGQAEHGS
Ga0209470_13758542	3300026324	Soil	NRHIKFAAKNFKATDVITVFVREKHAIELLWSHAAMLQTQHQLPRAQPAIDKNLAVIGCDEGAVSRAPAAEHGQAEHGS
Ga0209801_11171272	3300026326	Soil	RIAINRQIKFAAENFESANVIAVFVSEKHAIKLLGRDAALGQTQYQLPRAQSAIDKNLAMTRRDQGAVSRAAAAEHGQAEHGS
Ga0209801_12476261	3300026326	Soil	NVIAMFVSEKDAIDLARRDATLRQTQHQLPRAQPTIDKNLAMIGRHKCAISRAPAAEHGQAEHGS
Ga0209266_12741971	3300026327	Soil	AMFVCKEDAIELFRRNAALFQAQHQLARAQPAIDKNLAMISGDQRAVSRAPAAEHGQAEHGS
Ga0209803_12097711	3300026332	Soil	RFCRQRVAINRHVKFAAENFKSANVIAMFVSEKDAIDLARRDATLRQTQHQLPRAQPTIDKNLAMIGRHKCAISRAPAAEHGQAEHGS
Ga0209377_10605511	3300026334	Soil	IEFTAENFKSADMIGVFVREKDAVELLRRHPALLQAQHQLPRAQPAIDKNFAMIGRDQRAVSRAPAAEHGQAEHGS
Ga0257149_10718972	3300026355	Soil	VFVRKKDAIELLRHDAALLQTQYQLSRTQSAIDKNFAVIGCDERTVSRAPAAEHGQAEHGTYVSCVASACANGNE
Ga0257153_11240102	3300026490	Soil	RIAINRHVKLSAQDFEPADVITVFVSKKDAIELLRQDTAFRQAQHQLSRAQPAIDKNLAMIGRDQCAVSRAPAAEHGQAEHGT
Ga0209808_10324301	3300026523	Soil	IKFSAKHFKSADVVGVFMSEKHAIKLFRRDAALRQTQHQLSRAQAAIDKNPAMIRGDQCAVARAAAAEHRQAEHGF
Ga0209378_10221484	3300026528	Soil	CVAINRYIKFAAENFKTANVIAMFVCKQDAIELFRRNAALFQAQHQLARAQPAINKNLAMISCDQRAVSRAPAAEHRQAEHGS
Ga0209157_13133021	3300026537	Soil	INRNLKFAAQHFETANMIAVFMREKHAIELFRRHAAECKPQDELTRAQSAIDQNPAMISRDQRAVPGAAAAEHRQTEHV
Ga0179587_100744022	3300026557	Vadose Zone Soil	DIKFPAKNFESTDVVAVFVREEDAIELLRHDAALLQTQYQLSRAQPAIDKNLAVISRDERTVSRAPAAKHGQAEHGS
Ga0209488_109827961	3300027903	Vadose Zone Soil	KFPAKNFESTDVVAVFVRKKDAIDLLRHDAALLQTQYQLPRAQPAIDKNLAMIGCNQRAVPRAPAAKHGQAEHGTYVSRVASACANGNE
Ga0268265_109954102	3300028380	Switchgrass Rhizosphere	HVKFSTENFKPADVVRVFVSQKHAIKLLRRNTALLEAQNQLSCAQPAIDQNLAMIGGDEGAVSRAAAAEHGQAEHGS
Ga0307282_101941771	3300028784	Soil	ADVIAVFVRKKDAVELLRHDAALLQTQNQLPRAQPSIDKNFAVIGCDERTVSRAPAAEHGQAEHGF
Ga0307323_101819401	3300028787	Soil	SFCRQRVAINRHIKFPAKDFKTADVIAVFVREKDAIQPLGHDAALLQTQHQLPRAQPAIDKNLAMIRCNQGAVSRASAAEHGQAEHGI
Ga0307290_102517321	3300028791	Soil	KFPAKDFKTADVIAVFVREKDAIQPLGHDAALLQTQHQLPRAQPAIDKNLAMIRCNQGAVSRASAAEHGQAEHGI
Ga0307296_104261601	3300028819	Soil	FAAKNFKPADVVTVFMREKHAIKLIRHDAALRQTQHQLPRAQAAIDKNLAMIGCDQCAVSRAAAAEHGQTEHGS
Ga0307310_100229301	3300028824	Soil	NRHIKFAAKNFKATDVITVFVCEKDTIKLLRRDAAMFQTQHQLPRAQPAIDKNLAMIGCDEGAVSRAPAAEHGQAEHGS
Ga0307278_101320461	3300028878	Soil	AMFVSEKHAIQLIGRDAALGQTQYQLPRAQAAIDKNLAMIRGDQRTVSRAAAAEHRQTEHGS
Ga0170834_1071661921	3300031057	Forest Soil	RHVKFAAENFETANVIAVLVREQDAIELLRRNAAMLEAQRQLSRAQPAIDQNFTMIGRDQSAVSRASAPEHRQAEHGS
Ga0306925_121250462	3300031890	Soil	NRQIKFAAENLKSADMIGVFVREKHAIEPLRDYAALLKTQRQLPRAQPAIDEDLAMIGRDQCAVPRAPAAKHGQAEHGS
Ga0310810_112570151	3300033412	Soil	KFAAENFKSTNVITVLMREKDAVELFRHDAAMLQTQHQLPRAQTAIDKNLAMIGCDQRTISRAPAAEYGQAEHGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F099620

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences